Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ARID1A	8289	broad.mit.edu	37	1	27106982	27106982	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr1:27106982T>C	uc001bmv.1	+	20	6966	c.6593T>C	c.(6592-6594)TTC>TCC	p.F2198S	ARID1A_uc001bmu.1_Missense_Mutation_p.F1981S|ARID1A_uc001bmx.1_Missense_Mutation_p.F1044S|ARID1A_uc009vsm.1_Missense_Mutation_p.F526S|ARID1A_uc009vsn.1_Missense_Mutation_p.F440S	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2198					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CTCCTGGGCTTCCTAGAGGAC	0.607			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								13	83					0	0	0.105934	0	0
MACF1	23499	broad.mit.edu	37	1	39775962	39775962	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr1:39775962C>A	uc010ois.1	+	26	3182	c.2977C>A	c.(2977-2979)CTT>ATT	p.L993I	MACF1_uc001cda.1_Missense_Mutation_p.L901I|MACF1_uc001cdc.1_Missense_Mutation_p.L80I|MACF1_uc009vvq.1_Missense_Mutation_p.L50I|MACF1_uc001cdb.1_Missense_Mutation_p.L80I	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	993					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TATGAAGAACCTTCAGGCCCA	0.463													9	39					3.86212e-05	4.29729e-05	0.069234	1	0
HIVEP3	59269	broad.mit.edu	37	1	41976755	41976755	+	Silent	SNP	G	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr1:41976755G>C	uc001cgz.3	-	9	7801	c.6588C>G	c.(6586-6588)CCC>CCG	p.P2196P	HIVEP3_uc001cha.3_Silent_p.P2195P|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2196					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TCCCACCGATGGGAATCAAGG	0.667													17	86					0	0	0.043863	0	0
NTNG1	22854	broad.mit.edu	37	1	107937850	107937850	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr1:107937850C>A	uc001dvh.3	+	4	1680	c.962C>A	c.(961-963)ACT>AAT	p.T321N	NTNG1_uc001dvf.3_Missense_Mutation_p.T321N|NTNG1_uc010out.1_Missense_Mutation_p.T321N|NTNG1_uc001dvc.3_Missense_Mutation_p.T321N|NTNG1_uc001dvi.2_5'UTR|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_RNA|NTNG1_uc009wem.2_5'UTR|NTNG1_uc001dvd.1_Missense_Mutation_p.T321N	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	321	Laminin EGF-like 1.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		GAGCACAACACTACAGGTCCA	0.493													33	153					1.80694e-10	2.09924e-10	0.144211	1	0
IGSF3	3321	broad.mit.edu	37	1	117131439	117131439	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr1:117131439C>T	uc001egr.1	-	8	3022	c.2317G>A	c.(2317-2319)GAG>AAG	p.E773K	IGSF3_uc001egq.1_Missense_Mutation_p.E793K|IGSF3_uc001egs.1_Missense_Mutation_p.E446K	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	773	Ig-like C2-type 6.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		TCGCTGACCTCGGCTCTCTGG	0.627													7	22					0	0	0.047766	0	0
SELL	6402	broad.mit.edu	37	1	169677647	169677647	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr1:169677647C>T	uc001ggk.2	-	3	581	c.383G>A	c.(382-384)TGC>TAC	p.C128Y	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.C81Y|SELL_uc001ggl.1_Missense_Mutation_p.C141Y	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	128	C-type lectin.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					GATCTCCACGCAGTCCTCCTT	0.488													23	55					0	0	0.062417	0	0
CUBN	8029	broad.mit.edu	37	10	16918967	16918967	+	Missense_Mutation	SNP	G	A	A	rs143741363		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr10:16918967G>A	uc001ioo.2	-	57	9087	c.9035C>T	c.(9034-9036)CCG>CTG	p.P3012L	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Missense_Mutation_p.P368L	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3012	CUB 22.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AAGCAGAACCGGCCCAGCGAT	0.483													17	84					0	0	0.033300	0	0
ACADSB	36	broad.mit.edu	37	10	124793900	124793900	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr10:124793900C>T	uc001lhb.2	+	2	188	c.71C>T	c.(70-72)TCT>TTT	p.S24F	ACADSB_uc010qub.1_5'UTR	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	24					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	ACTTGTTTGTCTTCTTGGAAG	0.363													26	107					0	0	0.144211	0	0
OR8J3	81168	broad.mit.edu	37	11	55904466	55904466	+	Silent	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr11:55904466C>T	uc010riz.1	-	1	729	c.729G>A	c.(727-729)TCG>TCA	p.S243S		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CTATCATATGCGAAGCGCAGG	0.403													24	83					0	0	0.076483	0	0
Unknown	0	broad.mit.edu	37	11	71513938	71513938	+	RNA	SNP	T	A	A	rs139766133	by1000genomes	TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr11:71513938T>A	uc001oqx.1	-	3		c.662A>T								Homo sapiens cDNA clone IMAGE:5297769.																		GGCAAACAGCTCCTGAACATG	0.582													3	35					0	0	0.014758	0	0
DPAGT1	1798	broad.mit.edu	37	11	118971040	118971040	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr11:118971040C>T	uc001pvi.2	-	4	995	c.575G>A	c.(574-576)GGC>GAC	p.G192D	DPAGT1_uc001pvj.2_Missense_Mutation_p.G85D|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_Missense_Mutation_p.G20D|DPAGT1_uc010ryz.1_Missense_Mutation_p.G192D|DPAGT1_uc001pvm.1_Missense_Mutation_p.G85D|DPAGT1_uc010rza.1_Missense_Mutation_p.G85D	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	192	Cytoplasmic (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		AGCCTCTAGGCCGTTAATTCC	0.507											OREG0021396	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	103					0	0	0.091800	0	0
DGKA	1606	broad.mit.edu	37	12	56346149	56346149	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr12:56346149C>G	uc001sij.2	+	20	1941	c.1677C>G	c.(1675-1677)TTC>TTG	p.F559L	DGKA_uc001sii.1_Missense_Mutation_p.F417L|DGKA_uc009zod.1_Missense_Mutation_p.F478L|DGKA_uc001sik.2_Missense_Mutation_p.F559L|DGKA_uc001sil.2_Missense_Mutation_p.F559L|DGKA_uc001sim.2_Missense_Mutation_p.F559L|DGKA_uc001sin.2_Missense_Mutation_p.F559L|DGKA_uc009zof.2_Missense_Mutation_p.F205L|DGKA_uc001sio.2_Missense_Mutation_p.F301L	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	559					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	TATGGTACTTCGAATTTGCCA	0.478													48	97					0	0	0.139131	0	0
WSCD2	9671	broad.mit.edu	37	12	108589975	108589975	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr12:108589975G>C	uc001tms.2	+	2	1110	c.366G>C	c.(364-366)GAG>GAC	p.E122D	WSCD2_uc001tmt.2_Missense_Mutation_p.E122D	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	122						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						TTGTCCGGGAGAAGGAGGAAG	0.562													18	28					0	0	0.043863	0	0
VPS37B	79720	broad.mit.edu	37	12	123351888	123351888	+	Silent	SNP	T	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr12:123351888T>G	uc001udl.2	-	4	736	c.633A>C	c.(631-633)CCA>CCC	p.P211P		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	211	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		GCACCGGGGGTGGTGGGGGGG	0.716													4	19					0	0	0.009096	0	0
ZC3H13	23091	broad.mit.edu	37	13	46549686	46549686	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr13:46549686C>A	uc010tfw.1	-	11	2206	c.2200G>T	c.(2200-2202)GAT>TAT	p.D734Y	ZC3H13_uc001vas.1_Missense_Mutation_p.D734Y|ZC3H13_uc001vat.1_Missense_Mutation_p.D734Y	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	734	Arg/Glu-rich.|Potential.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		cgctctcGATCGTGGTCTCGG	0.085													3	12					0.004672	0.00485642	0.115264	1	0
RDH11	51109	broad.mit.edu	37	14	68157017	68157017	+	Silent	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr14:68157017G>A	uc001xjv.3	-	5	666	c.576C>T	c.(574-576)GGC>GGT	p.G192G	RDH11_uc001xjw.3_Silent_p.G179G|RDH11_uc001xjx.3_Intron	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	192	Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	AGAATTTCTCGCCCTGCAGGT	0.517													22	55					0	0	0.083992	0	0
RFX7	64864	broad.mit.edu	37	15	56387238	56387238	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr15:56387238C>G	uc010bfn.2	-	9	2688	c.2688G>C	c.(2686-2688)CAG>CAC	p.Q896H	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.Q710H	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	799					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						TTGACATTTGCTGCTCCATAA	0.418													13	54					0	0	0.105934	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53730090	53730090	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr16:53730090G>A	uc002ehp.2	-	3	267	c.203C>T	c.(202-204)GCC>GTC	p.A68V	RPGRIP1L_uc002eho.3_Missense_Mutation_p.A68V|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.A68V|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.A68V|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.A68V|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.A68V|RPGRIP1L_uc010cby.1_Missense_Mutation_p.A68V	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	68	Potential.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				CTGCTTGCGGGCATGCTGTTT	0.373													5	235					0	0	0.014758	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904193	21904193	+	RNA	SNP	C	G	G	rs9904221	by1000genomes	TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr17:21904193C>G	uc002gza.2	+	1		c.132C>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						cagcctcaggcctgccaggac	0													3	75					0	0	0.009096	0	0
FASN	2194	broad.mit.edu	37	17	80041413	80041413	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr17:80041413A>C	uc002kdu.2	-	31	5438	c.5321T>G	c.(5320-5322)CTT>CGT	p.L1774R	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1774	Enoyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GTTCTGAGAAAGGTCGAATTT	0.637													9	74					0	0	0.058154	0	0
ZNF521	25925	broad.mit.edu	37	18	22806306	22806306	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr18:22806306A>C	uc002kvk.2	-	4	1823	c.1576T>G	c.(1576-1578)TCT>GCT	p.S526A	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.S526A|ZNF521_uc002kvl.2_Missense_Mutation_p.S306A	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	526	C2H2-type 12.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TCCAGGGAAGAGTCAGTGAGA	0.463			T	PAX5	ALL								29	87					0	0	0.108266	0	0
ZNF236	7776	broad.mit.edu	37	18	74622686	74622686	+	Silent	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr18:74622686C>T	uc002lmi.2	+	16	2916	c.2718C>T	c.(2716-2718)AGC>AGT	p.S906S	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	906					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		AGGATTCCAGCACACTTGAGT	0.493													25	85					0	0	0.076483	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651052	8651052	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr19:8651052G>T	uc002mkj.1	-	22	2888	c.2614C>A	c.(2614-2616)CTG>ATG	p.L872M	ADAMTS10_uc002mki.1_Missense_Mutation_p.L359M|ADAMTS10_uc002mkk.1_Missense_Mutation_p.L504M	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	872	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CTTTTGGGCAGCTTGCTGTGG	0.672											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	37					0.00116845	0.00124739	0.021553	1	0
ZNF266	10781	broad.mit.edu	37	19	9524367	9524367	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr19:9524367T>G	uc002mll.2	-	4	1500	c.1234A>C	c.(1234-1236)AAA>CAA	p.K412Q	ZNF266_uc002mlm.2_Missense_Mutation_p.K412Q|ZNF266_uc002mln.2_Missense_Mutation_p.K412Q|ZNF266_uc002mlo.2_Missense_Mutation_p.K412Q|ZNF266_uc010dwp.2_Missense_Mutation_p.K412Q|ZNF266_uc010dwq.2_Missense_Mutation_p.K412Q	NM_198058	NP_932175	Q14584	ZN266_HUMAN	zinc finger protein 266	412	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTCCCACATTTGACACATTCA	0.433													21	45					0	0	0.049695	0	0
ZNF561	93134	broad.mit.edu	37	19	9721627	9721627	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr19:9721627G>A	uc002mlu.2	-	6	915	c.710C>T	c.(709-711)TCT>TTT	p.S237F	ZNF561_uc010dwu.2_Missense_Mutation_p.S168F|ZNF561_uc010xkr.1_Missense_Mutation_p.S101F	NM_152289	NP_689502	Q8N587	ZN561_HUMAN	zinc finger protein 561	237	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAGGTGTGAAGAAGCTGTGAC	0.373													21	81					0	0	0.062417	0	0
MYO9B	4650	broad.mit.edu	37	19	17311587	17311587	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr19:17311587G>T	uc010eak.2	+	26	4664	c.4512G>T	c.(4510-4512)CAG>CAT	p.Q1504H	MYO9B_uc002nfi.2_Missense_Mutation_p.Q1504H|MYO9B_uc002nfj.1_Missense_Mutation_p.Q1504H|MYO9B_uc002nfl.1_Missense_Mutation_p.Q53H	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1504	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						TGTTCCGCCAGATCACCAACG	0.577													18	59					5.26018e-13	6.2023e-13	0.062417	1	0
CAD	790	broad.mit.edu	37	2	27459639	27459639	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr2:27459639C>A	uc002rji.2	+	27	4499	c.4337C>A	c.(4336-4338)GCC>GAC	p.A1446D	CAD_uc010eyw.2_Missense_Mutation_p.A1383D	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1446	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	ATCGGGCCAGCCCCTCCTTTG	0.537													35	121					1.30998e-17	1.56801e-17	0.080422	1	0
OTX1	5013	broad.mit.edu	37	2	63280064	63280064	+	Translation_Start_Site	SNP	C	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr2:63280064C>A	uc002scd.2	+	3	187	c.-61C>A	c.(-63--59)CCCTG>CCATG		OTX1_uc010ypt.1_Translation_Start_Site	NM_014562	NP_055377	P32242	OTX1_HUMAN	orthodenticle homeobox 1							nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(2)	2	Lung NSC(7;0.121)|all_lung(7;0.211)					GGTGGGAGCCCTGCACCGCTC	0.632													3	48					0.004672	0.00485642	0.115264	1	0
ANKRD36	375248	broad.mit.edu	37	2	97884950	97884950	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr2:97884950A>G	uc010yva.1	+	66	4166	c.3922A>G	c.(3922-3924)ACC>GCC	p.T1308A	ANKRD36_uc002sxr.1_Missense_Mutation_p.T133A	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	1308											0						GAATACAGCCACCAAAATGAA	0.333													3	5					0	0	0.014758	0	0
VWA3B	200403	broad.mit.edu	37	2	98744846	98744846	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr2:98744846G>T	uc002syo.2	+	6	1111	c.847G>T	c.(847-849)GAT>TAT	p.D283Y	VWA3B_uc010yvh.1_Missense_Mutation_p.D133Y|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Missense_Mutation_p.D283Y|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	283										ovary(3)|large_intestine(2)|skin(1)	6						TTTTCTAAAGGATCTGAGTGC	0.527													13	49					0.000151284	0.000165993	0.105934	1	0
BUB1	699	broad.mit.edu	37	2	111399713	111399713	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr2:111399713G>A	uc002tgc.2	-	20	2558	c.2446C>T	c.(2446-2448)CAG>TAG	p.Q816*	BUB1_uc010yxh.1_Nonsense_Mutation_p.Q796*|BUB1_uc010fkb.2_Nonsense_Mutation_p.Q816*	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	816	Protein kinase.				apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		ACAAATTTCTGTTTATTTTTA	0.358													5	36					0	0	0.014758	0	0
KIAA0406	9675	broad.mit.edu	37	20	36612011	36612011	+	Silent	SNP	T	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr20:36612011T>A	uc002xhl.2	-	9	3326	c.3117A>T	c.(3115-3117)CCA>CCT	p.P1039P	KIAA0406_uc002xhm.2_Silent_p.P1039P	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	1039							binding				0		Myeloproliferative disorder(115;0.00874)				AGGTGGAGTCTGGGTCCACCT	0.617													5	41					0	0	0.014758	0	0
EMILIN3	90187	broad.mit.edu	37	20	39993715	39993715	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr20:39993715G>A	uc002xjy.1	-	2	474	c.250C>T	c.(250-252)CGG>TGG	p.R84W		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	84	EMI.					proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CTACACTGCCGGTATTCAGCC	0.577													3	99					0	0	0.009096	0	0
KCNQ2	3785	broad.mit.edu	37	20	62073832	62073832	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr20:62073832A>G	uc002yey.1	-	5	920	c.743T>C	c.(742-744)TTC>TCC	p.F248S	KCNQ2_uc002yez.1_Missense_Mutation_p.F248S|KCNQ2_uc002yfa.1_Missense_Mutation_p.F248S|KCNQ2_uc002yfb.1_Missense_Mutation_p.F248S|KCNQ2_uc011aax.1_Missense_Mutation_p.F248S|KCNQ2_uc002yfc.1_Missense_Mutation_p.F248S	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	248	Helical; Name=Segment S5; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	GTACACCAGGAACGAGGCCAG	0.522													5	240					0	0	0.014758	0	0
UMODL1	89766	broad.mit.edu	37	21	43505425	43505425	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr21:43505425C>T	uc002zaf.1	+	4	506	c.506C>T	c.(505-507)TCC>TTC	p.S169F	UMODL1_uc002zad.1_Missense_Mutation_p.S97F|UMODL1_uc002zae.1_Missense_Mutation_p.S97F|UMODL1_uc002zag.1_Missense_Mutation_p.S169F|UMODL1_uc010gow.1_5'UTR|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_5'UTR|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_5'UTR	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	169	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CCTGTGGGCTCCTGGTACAAC	0.537													28	134					0	0	0.116897	0	0
PI4KAP2	375133	broad.mit.edu	37	22	21829507	21829507	+	Missense_Mutation	SNP	G	A	A	rs140118179	by1000genomes	TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr22:21829507G>A	uc002zuv.3	-	14	3895	c.1636C>T	c.(1636-1638)CTC>TTC	p.L546F	PI4KAP2_uc002zuw.2_Intron|PI4KAP2_uc011aid.1_Intron					SubName: Full=Putative uncharacterized protein PI4KA;												0						TACTTCAAGAGCTTGATTGTC	0.542													8	11					0	0	0.058154	0	0
MYO18B	84700	broad.mit.edu	37	22	26400727	26400727	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr22:26400727C>T	uc003abz.1	+	42	6626	c.6376C>T	c.(6376-6378)CAG>TAG	p.Q2126*	MYO18B_uc003aca.1_Nonsense_Mutation_p.Q2007*|MYO18B_uc010guy.1_Nonsense_Mutation_p.Q2008*|MYO18B_uc010guz.1_Nonsense_Mutation_p.Q2006*|MYO18B_uc011aka.1_Nonsense_Mutation_p.Q1280*|MYO18B_uc011akb.1_Nonsense_Mutation_p.Q1639*|MYO18B_uc010gva.1_Nonsense_Mutation_p.Q109*	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2126						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGGCAGCCTGCAGTCCTGGTT	0.532													12	77					0	0	0.080935	0	0
MKL1	57591	broad.mit.edu	37	22	40814880	40814880	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr22:40814880C>T	uc003ayv.1	-	9	1769	c.1562G>A	c.(1561-1563)CGC>CAC	p.R521H	MKL1_uc003ayw.1_Missense_Mutation_p.R521H|MKL1_uc010gye.1_Missense_Mutation_p.R521H|MKL1_uc010gyf.1_Missense_Mutation_p.R471H	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	521	Potential.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GTCCTTGTCGCGCCCCTCTAG	0.682			T	RBM15	acute megakaryocytic leukemia								16	62					0	0	0.049695	0	0
DNAH1	25981	broad.mit.edu	37	3	52398951	52398951	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr3:52398951A>G	uc011bef.1	+	34	5695	c.5434A>G	c.(5434-5436)ATC>GTC	p.I1812V		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1812					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTTTCCCACCATCAAGGAGGA	0.612													27	57					0	0	0.099896	0	0
SLMAP	7871	broad.mit.edu	37	3	57898917	57898917	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr3:57898917G>T	uc003dje.1	+	19	2207	c.2002G>T	c.(2002-2004)GCA>TCA	p.A668S	SLMAP_uc003djd.1_Missense_Mutation_p.A651S|SLMAP_uc003djf.1_Missense_Mutation_p.A630S|SLMAP_uc003djg.1_Missense_Mutation_p.A262S|SLMAP_uc011bez.1_Missense_Mutation_p.A136S|SLMAP_uc011bfa.1_Missense_Mutation_p.A202S|SLMAP_uc003djh.2_Missense_Mutation_p.A161S|SLMAP_uc003dji.1_Missense_Mutation_p.A202S|SLMAP_uc011bfb.1_Missense_Mutation_p.A202S|SLMAP_uc011bfc.1_Missense_Mutation_p.A161S	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	668	Cytoplasmic (Potential).|Potential.				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		GGAATGGAATGCATTGGAAAC	0.338													16	69					2.23348e-06	2.52065e-06	0.146539	1	0
GXYLT2	727936	broad.mit.edu	37	3	72957696	72957696	+	Missense_Mutation	SNP	G	A	A	rs142024018	by1000genomes	TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr3:72957696G>A	uc003dpg.2	+	2	454	c.454G>A	c.(454-456)GAG>AAG	p.E152K		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	152	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						TCTGAAGCCCGAGTTTGATAA	0.418													10	31					0	0	0.069234	0	0
COL29A1	256076	broad.mit.edu	37	3	130174495	130174495	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr3:130174495G>A	uc010htj.1	+	37	7269	c.6775G>A	c.(6775-6777)GCA>ACA	p.A2259T	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.A298T	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2259	Nonhelical region.				axon guidance|cell adhesion	collagen					0						TGCAGAAATTGCAAGTCTCAC	0.308													4	47					0	0	0.009096	0	0
HTT	3064	broad.mit.edu	37	4	3124641	3124641	+	Silent	SNP	T	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr4:3124641T>C	uc011bvq.1	+	11	1450	c.1305T>C	c.(1303-1305)CCT>CCC	p.P435P		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	433					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CATGCAGCCCTGTCCTTTCAA	0.348													3	134					0	0	0.115264	0	0
NFXL1	152518	broad.mit.edu	37	4	47901107	47901107	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr4:47901107G>A	uc010igh.2	-	7	1034	c.857C>T	c.(856-858)ACA>ATA	p.T286I	NFXL1_uc003gxp.2_Missense_Mutation_p.T286I|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.T286I	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	286	NF-X1-type 1.					integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ACAAGTAGTTGTGACCATCTT	0.388													9	39					0	0	0.058154	0	0
SLC4A4	8671	broad.mit.edu	37	4	72429512	72429512	+	Silent	SNP	T	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr4:72429512T>A	uc003hfy.2	+	24	3219	c.3102T>A	c.(3100-3102)TCT>TCA	p.S1034S	SLC4A4_uc010iic.2_Intron|SLC4A4_uc010iib.2_Silent_p.S950S|SLC4A4_uc003hfz.2_Silent_p.S1034S|SLC4A4_uc003hgc.3_Silent_p.S990S|SLC4A4_uc010iid.2_Silent_p.S238S	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	1034	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TTTCACAGTCTGACTGCCCAT	0.363													28	134					0	0	0.125774	0	0
TBCK	93627	broad.mit.edu	37	4	107163639	107163639	+	Silent	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr4:107163639G>A	uc010ilv.2	-	12	1523	c.1158C>T	c.(1156-1158)TGC>TGT	p.C386C	TBCK_uc003hyb.2_Silent_p.C129C|TBCK_uc003hye.2_Silent_p.C347C|TBCK_uc003hyc.2_Silent_p.C323C|TBCK_uc003hyd.2_Silent_p.C214C|TBCK_uc003hyf.2_Silent_p.C386C	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	386						intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						TTCTTAGCTGGCATAACGACA	0.313													3	72					0	0	0.115264	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577													3	19					0	0	0.014758	0	0
SLC26A8	116369	broad.mit.edu	37	6	35949921	35949921	+	Silent	SNP	C	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr6:35949921C>T	uc003olm.2	-	8	1113	c.1002G>A	c.(1000-1002)ACG>ACA	p.T334T	SLC26A8_uc003oln.2_Silent_p.T334T|SLC26A8_uc003oll.2_Silent_p.T229T	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	334	Extracellular (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TGTCAATAAGCGTCTGGCTGG	0.423													19	89					0	0	0.038395	0	0
RBAK	57786	broad.mit.edu	37	7	5104736	5104736	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:5104736A>T	uc010kss.1	+	6	1973	c.1649A>T	c.(1648-1650)GAG>GTG	p.E550V	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.E550V	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	550	Interaction with AR.|C2H2-type 11.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		TTATTCAATGAGTTGTCATAC	0.393													30	67					0	0	0.134883	0	0
SP4	6671	broad.mit.edu	37	7	21468915	21468915	+	Silent	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:21468915G>A	uc003sva.2	+	3	313	c.132G>A	c.(130-132)CAG>CAA	p.Q44Q	SP4_uc003svb.2_Intron	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	44					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						AGGACTCTCAGCCCTCTCCTC	0.483													7	42					0	0	0.038147	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761639	92761639	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:92761639A>G	uc003umh.1	-	5	4862	c.3646T>C	c.(3646-3648)TTT>CTT	p.F1216L	SAMD9L_uc003umj.1_Missense_Mutation_p.F1216L|SAMD9L_uc003umi.1_Missense_Mutation_p.F1216L|SAMD9L_uc010lfb.1_Missense_Mutation_p.F1216L|SAMD9L_uc003umk.1_Missense_Mutation_p.F1216L|SAMD9L_uc010lfc.1_Missense_Mutation_p.F1216L|SAMD9L_uc010lfd.1_Missense_Mutation_p.F1216L|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1216										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGTGGAAAAAGGGAGTGAGC	0.378													3	194					0	0	0.115264	0	0
CCDC132	55610	broad.mit.edu	37	7	92932848	92932848	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:92932848A>G	uc003umo.2	+	17	1566	c.1438A>G	c.(1438-1440)ATC>GTC	p.I480V	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.I450V|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.I200V	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	480											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			AAATTTCAGCATCTTGCAACT	0.308													38	167					0	0	0.117977	0	0
SH2B2	10603	broad.mit.edu	37	7	101943829	101943829	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:101943829G>A	uc011kko.1	+	2	169	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						CGATGGGACGGAAGCCATGAA	0.468													11	38					0	0	0.093190	0	0
AKR1B1	231	broad.mit.edu	37	7	134133231	134133231	+	Silent	SNP	T	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:134133231T>C	uc003vrp.1	-	6	641	c.567A>G	c.(565-567)CCA>CCG	p.P189P	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	189					C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	GAGTGAGATATGGGTGGCACT	0.532													7	28					0	0	0.029380	0	0
PREX2	80243	broad.mit.edu	37	8	69046477	69046477	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr8:69046477T>C	uc003xxv.1	+	32	3977	c.3950T>C	c.(3949-3951)CTT>CCT	p.L1317P		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1317					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GCAGGTGTTCTTTTTCACTTT	0.458													6	101					0	0	0.021553	0	0
FAM135B	51059	broad.mit.edu	37	8	139164987	139164987	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr8:139164987C>G	uc003yuy.2	-	13	1902	c.1731G>C	c.(1729-1731)GAG>GAC	p.E577D	FAM135B_uc003yux.2_Missense_Mutation_p.E478D|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E139D|FAM135B_uc003yvb.2_Missense_Mutation_p.E139D	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	577										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AGCTCCTACTCTCATGCTGAG	0.483										HNSCC(54;0.14)			6	245					0	0	0.021553	0	0
UBE2R2	54926	broad.mit.edu	37	9	33900238	33900238	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr9:33900238T>A	uc003ztm.2	+	3	905	c.331T>A	c.(331-333)TCT>ACT	p.S111T		NM_017811	NP_060281	Q712K3	UB2R2_HUMAN	ubiquitin-conjugating enzyme UBC3B	111					protein K48-linked ubiquitination|protein monoubiquitination		ATP binding|ubiquitin-protein ligase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)	GBM - Glioblastoma multiforme(74;0.188)		AGAACTGCCTTCTGAAAGGTG	0.383													28	96					0	0	0.045705	0	0
RGP1	9827	broad.mit.edu	37	9	35751270	35751270	+	Silent	SNP	G	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr9:35751270G>A	uc011lpf.1	+	6	636	c.495G>A	c.(493-495)CAG>CAA	p.Q165Q	GBA2_uc011lpb.1_5'Flank|GBA2_uc003zxw.2_5'Flank|GBA2_uc011lpc.1_5'Flank|GBA2_uc011lpd.1_5'Flank|RGP1_uc011lpe.1_Silent_p.Q205Q	NM_001080496	NP_001073965	Q92546	RGP1_HUMAN	RGP1 retrograde golgi transport homolog	165										ovary(1)	1	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TAGGCCTTCAGGATGTCCGGT	0.498													70	249					0	0	0.139131	0	0
NUP214	8021	broad.mit.edu	37	9	134020018	134020018	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr9:134020018G>T	uc004cag.2	+	12	1757	c.1646G>T	c.(1645-1647)GGA>GTA	p.G549V	NUP214_uc004cah.2_Missense_Mutation_p.G549V|NUP214_uc004cai.2_5'UTR|NUP214_uc004caf.1_Missense_Mutation_p.G549V|NUP214_uc010mzf.2_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	549	11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		TTCTCCTTTGGATCATCTGGT	0.537			T	DEK|SET|ABL1	AML|T-ALL								22	68					4.54149e-19	5.51965e-19	0.069288	1	0
Unknown	0	broad.mit.edu	37	MT	8119	8119	+	RNA	SNP	T	C	C			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chrM:8119T>C	uc004cou.3	+	1		c.534T>C			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		ATTCCCGGACGTCTAAACCAA	0.473													5	231					0	0	0.014758	0	0
CLCN4	1183	broad.mit.edu	37	X	10162970	10162970	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chrX:10162970C>G	uc004csy.3	+	5	694	c.264C>G	c.(262-264)ATC>ATG	p.I88M	CLCN4_uc011mid.1_Translation_Start_Site	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	88	Helical; (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						CTGGGGTCATCGATCTCGCCG	0.572													3	73					0	0	0.115264	0	0
MAOB	4129	broad.mit.edu	37	X	43702915	43702915	+	Splice_Site	SNP	C	G	G			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chrX:43702915C>G	uc004dfz.3	-	2	317	c.141_splice	c.e2+1	p.R47_splice	MAOB_uc011mkx.1_Splice_Site_p.R31_splice|MAOB_uc011mky.1_Splice_Site_p.R31_splice|MAOB_uc010nhj.2_Splice_Site_p.R47_splice	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B						xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	TAATGCCTTACCCTAAGAGTG	0.478													9	10					0	0	0.093190	0	0
SMC1A	8243	broad.mit.edu	37	X	53407985	53407985	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chrX:53407985A>T	uc004dsg.2	-	23	3530	c.3461T>A	c.(3460-3462)GTC>GAC	p.V1154D	SMC1A_uc011moe.1_Missense_Mutation_p.V1132D	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	1154	Ala/Asp-rich (DA-box).				cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						CTCATCCAGGACGAAGAAGGG	0.632													22	30					0	0	0.083992	0	0
LGR4	55366	broad.mit.edu	37	11	27390335	27390336	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr11:27390335_27390336insA	uc001mrj.3	-	18	2419_2420	c.1934_1935insT	c.(1933-1935)TTAfs	p.L645fs	LGR4_uc001mrk.3_Frame_Shift_Ins_p.L621fs	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	645	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						CTTTTGCAGATAAGCTTCTTTC	0.431													21	93	---	---	---	---					
PRB4	5545	broad.mit.edu	37	12	11461597	11461597	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr12:11461597delC	uc001qzf.1	-	3	354	c.320delG	c.(319-321)GGAfs	p.G107fs	PRB4_uc001qzt.2_Frame_Shift_Del_p.G107fs	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	149	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|6.		Missing (in allele M and allele S).			extracellular region				ovary(1)	1						GGACTGGTTTCCTCCTTGTGG	0.612										HNSCC(22;0.051)			116	663	---	---	---	---					
MLL2	8085	broad.mit.edu	37	12	49443557	49443558	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr12:49443557_49443558delAT	uc001rta.3	-	11	3813_3814	c.3813_3814delAT	c.(3811-3816)CTATTGfs	p.L1271fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1271_1272					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GCATCGCACAATAGTGAGTCAT	0.609			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			24	136	---	---	---	---					
MGAT2	4247	broad.mit.edu	37	14	50089217	50089220	+	Frame_Shift_Del	DEL	CTAA	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr14:50089217_50089220delCTAA	uc001wwr.2	+	1	1729_1732	c.1231_1234delCTAA	c.(1231-1236)CTAACTfs	p.L411fs	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	411_412	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					TCCAGAAACTCTAACTATCAGTGA	0.392													8	100	---	---	---	---					
CYFIP1	23191	broad.mit.edu	37	15	22929873	22929873	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr15:22929873delA	uc001yus.2	+	6	651	c.547delA	c.(547-549)AACfs	p.N183fs	CYFIP1_uc001yut.2_Frame_Shift_Del_p.N183fs|CYFIP1_uc010aya.1_Frame_Shift_Del_p.N211fs	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	183					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		CAGTGTGAAGAACGACCACTC	0.572													9	49	---	---	---	---					
ACAA1	30	broad.mit.edu	37	3	38167081	38167092	+	In_Frame_Del	DEL	TGAGCAGCGTGA	-	-	rs138308587	byFrequency	TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr3:38167081_38167092delTGAGCAGCGTGA	uc003cht.2	-	11	1370_1381	c.1163_1174delTCACGCTGCTCA	c.(1162-1176)ATCACGCTGCTCAAT>AAT	p.ITLL388del	ACAA1_uc003chu.2_In_Frame_Del_p.ITLL295del|ACAA1_uc010hgy.2_In_Frame_Del_p.ITLL347del|ACAA1_uc010hgz.2_Intron|ACAA1_uc003chv.2_In_Frame_Del_p.ITLL236del	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	388_391					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		TTCAGCTCATTGAGCAGCGTGATGACCTGTCG	0.618													13	82	---	---	---	---					
GBE1	2632	broad.mit.edu	37	3	81698998	81698998	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr3:81698998delA	uc003dqg.2	-	5	787	c.504delT	c.(502-504)GGTfs	p.G168fs	GBE1_uc011bgm.1_Frame_Shift_Del_p.G127fs	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	168					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		TCACATTATCACCTTCACGAA	0.348									Glycogen_Storage_Disease_type_IV				11	49	---	---	---	---					
PSD2	84249	broad.mit.edu	37	5	139193812	139193812	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr5:139193812delG	uc003leu.1	+	4	1084	c.879delG	c.(877-879)GAGfs	p.E293fs		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	293	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGCTCGGAGGGGTTGGAGC	0.632													27	145	---	---	---	---					
STAG3	10734	broad.mit.edu	37	7	99779767	99779767	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	g.chr7:99779767delT	uc003utx.1	+	3	326	c.171delT	c.(169-171)AATfs	p.N57fs	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Frame_Shift_Del_p.N57fs	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	57					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ACAGCTTGAATCGCAATGTGA	0.423													10	62	---	---	---	---					
