Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17085791	17085791	+	Missense_Mutation	SNP	G	A	A	rs2297532	by1000genomes	TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr1:17085791G>A	uc010ock.1	-	8	1030	c.1030C>T	c.(1030-1032)CGT>TGT	p.R344C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TCTGTACAACGCCGGATCTGG	0.692000													4	30					0	0	0.009096	0	0
OR2G2	81470	broad.mit.edu	37	1	247751788	247751788	+	Silent	SNP	T	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr1:247751788T>C	uc010pyy.1	+	1	127	c.127T>C	c.(127-129)TTG>CTG	p.L43L		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ACTAACTATTTTGGGGAATAC	0.408000													70	192					0	0	0.014410	0	0
AKAP3	10566	broad.mit.edu	37	12	4736579	4736579	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr12:4736579G>C	uc001qnb.3	-	4	1718	c.1489C>G	c.(1489-1491)CCT>GCT	p.P497A		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	497					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						ATATCTTCAGGGTACTCAAAG	0.463000													9	33					0	0	0.004482	0	0
ARID2	196528	broad.mit.edu	37	12	46244916	46244916	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr12:46244916A>T	uc001ros.1	+	15	3010	c.3010A>T	c.(3010-3012)AGT>TGT	p.S1004C	ARID2_uc001ror.2_Missense_Mutation_p.S1004C|ARID2_uc009zkg.1_Missense_Mutation_p.S460C|ARID2_uc009zkh.1_Missense_Mutation_p.S631C|ARID2_uc001rou.1_Missense_Mutation_p.S338C	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1004	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TCCTACTGTCAGTCAAATGTT	0.502000													21	107					0	0	0.008871	0	0
LRRC16B	90668	broad.mit.edu	37	14	24523942	24523942	+	Missense_Mutation	SNP	G	A	A	rs141263195	byFrequency	TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr14:24523942G>A	uc001wlj.2	+	6	542	c.385G>A	c.(385-387)GCA>ACA	p.A129T		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	129										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GCGTGGAAACGCAGACACCCC	0.552000													7	46					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106236118	106236118	+	RNA	SNP	C	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr14:106236118C>T	uc010tyt.1	-	3616		c.57826G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CCACACGGAACGTGCTGTTGT	0.602000													46	275					0	0	0.014410	0	0
HERC2	8924	broad.mit.edu	37	15	28370205	28370205	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr15:28370205T>G	uc001zbj.2	-	84	13043	c.12937A>C	c.(12937-12939)ACC>CCC	p.T4313P		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4313	RCC1 19.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CAGGCGAGGGTATGTGCTGAG	0.622000													10	148					0	0	0.018920	0	0
RYR3	6263	broad.mit.edu	37	15	33954438	33954438	+	Silent	SNP	C	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr15:33954438C>T	uc001zhi.2	+	35	4777	c.4707C>T	c.(4705-4707)TGC>TGT	p.C1569C	RYR3_uc010bar.2_Silent_p.C1569C	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1569	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCGCGGTGTGCGCCCTGGGAA	0.612000													3	20					0	0	0.004672	0	0
FLII	2314	broad.mit.edu	37	17	18149935	18149935	+	Silent	SNP	G	A	A			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr17:18149935G>A	uc002gsr.1	-	23	3075	c.3024C>T	c.(3022-3024)TTC>TTT	p.F1008F	FLII_uc002gsq.1_Silent_p.F879F|FLII_uc010cpy.1_Silent_p.F997F|FLII_uc010vxn.1_Silent_p.F977F|FLII_uc010vxo.1_Silent_p.F953F|FLII_uc002gss.1_Silent_p.F1007F	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	1008					multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					AGAGGCTCTCGAACTTCTTTT	0.587000													13	37					0	0	0.013537	0	0
FDXR	2232	broad.mit.edu	37	17	72860612	72860612	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr17:72860612G>C	uc002jly.2	-	8	879	c.792C>G	c.(790-792)GAC>GAG	p.D264E	FDXR_uc010wri.1_Missense_Mutation_p.D212E|FDXR_uc010wrj.1_Missense_Mutation_p.D262E|FDXR_uc002jlw.2_Missense_Mutation_p.D21E|FDXR_uc002jlx.2_Missense_Mutation_p.D270E|FDXR_uc002jmc.2_Intron|FDXR_uc010wrk.1_Missense_Mutation_p.D295E|FDXR_uc010wrl.1_Missense_Mutation_p.D307E|FDXR_uc002jma.2_Missense_Mutation_p.D265E|FDXR_uc010wrm.1_Missense_Mutation_p.D224E|FDXR_uc002jlz.2_Missense_Mutation_p.D256E|FDXR_uc002jmb.2_Intron	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	264					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					CCTTGATCTTGTCCTGGAGAC	0.612000											OREG0024720	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	67					0	0	0.001984	0	0
NANOS3	342977	broad.mit.edu	37	19	13988494	13988494	+	Silent	SNP	A	G	G			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr19:13988494A>G	uc002mxj.3	+	1	545	c.432A>G	c.(430-432)CGA>CGG	p.R144R		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	125					anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			ACACCACCCGAAACTCGGCAG	0.662000													7	23					0	0	0.003080	0	0
NLRP7	199713	broad.mit.edu	37	19	55452315	55452315	+	Silent	SNP	C	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr19:55452315C>T	uc002qih.3	-	3	412	c.336G>A	c.(334-336)TCG>TCA	p.S112S	NLRP7_uc002qig.3_Silent_p.S112S|NLRP7_uc002qii.3_Silent_p.S112S|NLRP7_uc010esk.2_Silent_p.S112S|NLRP7_uc010esl.2_Silent_p.S140S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	112							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTGCTAACTCCGAGTCTTCTT	0.433000													46	154					0	0	0.014410	0	0
CCT4	10575	broad.mit.edu	37	2	62115531	62115531	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr2:62115531T>C	uc002sbo.2	-	1	261	c.112A>G	c.(112-114)ATT>GTT	p.I38V	CCT4_uc010ypp.1_Intron|CCT4_uc010ypq.1_5'UTR|CCT4_uc010ypr.1_5'UTR|CCT4_uc010yps.1_Missense_Mutation_p.I38V	NM_006430	NP_006421	P50991	TCPD_HUMAN	chaperonin containing TCP1, subunit 4 (delta)	38					'de novo' posttranslational protein folding	melanosome|microtubule organizing center|nucleus	ATP binding|unfolded protein binding			ovary(2)	2	Lung NSC(7;0.035)|all_lung(7;0.0691)		LUSC - Lung squamous cell carcinoma(7;6.5e-06)|Epithelial(17;0.0647)|all cancers(80;0.221)			GCGGCGGAAATGTTGCTGAAG	0.677000													16	22					0	0	0.012319	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693177	187693177	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr2:187693177T>A	uc002upu.1	-	9	1476	c.1436A>T	c.(1435-1437)AAT>ATT	p.N479I		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	479					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TTTTTTTGAATTTGAATTATC	0.299000													6	34					0	0	0.021553	0	0
TMC2	117532	broad.mit.edu	37	20	2621849	2621849	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr20:2621849A>G	uc002wgf.1	+	20	2588	c.2573A>G	c.(2572-2574)AAT>AGT	p.N858S	TMC2_uc002wgg.1_Missense_Mutation_p.N842S	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	858	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						GGGACCTCCAATTCTGCCAGC	0.582000													5	180					0	0	0.021553	0	0
CHD6	84181	broad.mit.edu	37	20	40033696	40033696	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr20:40033696G>A	uc002xka.1	-	37	7863	c.7685C>T	c.(7684-7686)ACG>ATG	p.T2562M	CHD6_uc002xjz.1_Missense_Mutation_p.T99M	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2562					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AGTCACTGCCGTACCACTTTT	0.527000													5	214					0	0	0.014758	0	0
PRIC285	85441	broad.mit.edu	37	20	62198513	62198513	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr20:62198513C>T	uc002yfm.2	-	7	3090	c.2198G>A	c.(2197-2199)CGG>CAG	p.R733Q	PRIC285_uc002yfl.1_Missense_Mutation_p.R164Q	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	733					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GCGGCTCTGCCGCGCCACCTC	0.662000													9	123					0	0	0.004482	0	0
INPP5J	27124	broad.mit.edu	37	22	31529986	31529986	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr22:31529986C>T	uc003aju.3	+	13	2694	c.2602C>T	c.(2602-2604)CTC>TTC	p.L868F	INPP5J_uc003ajv.3_Missense_Mutation_p.L501F|INPP5J_uc003ajs.3_Missense_Mutation_p.L501F|INPP5J_uc011alk.1_Missense_Mutation_p.L801F|INPP5J_uc010gwg.2_Missense_Mutation_p.L433F|INPP5J_uc003ajw.2_3'UTR|INPP5J_uc003ajt.3_Missense_Mutation_p.L500F|INPP5J_uc003ajx.2_Missense_Mutation_p.L233F|INPP5J_uc003ajy.2_Missense_Mutation_p.L207F|INPP5J_uc003ajz.2_Missense_Mutation_p.L308F	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	868	Ser-rich.					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						CACACTGGAGCTCCTTGCACC	0.657000													7	26					0	0	0.001984	0	0
SULT1E1	6783	broad.mit.edu	37	4	70713465	70713465	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr4:70713465T>C	uc003heo.2	-	6	655	c.542A>G	c.(541-543)AAG>AGG	p.K181R		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	181					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						ACTCTTTCCCTTTTCCCACCA	0.373000													3	100					0	0	0.004672	0	0
RCHY1	25898	broad.mit.edu	37	4	76439476	76439476	+	Silent	SNP	T	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr4:76439476T>C	uc003hik.2	-	1	153	c.21A>G	c.(19-21)GAA>GAG	p.E7E	RCHY1_uc003hij.2_Silent_p.E7E|RCHY1_uc003hil.2_Silent_p.E7E|RCHY1_uc010iip.2_Silent_p.E7E|RCHY1_uc010iiq.2_RNA|RCHY1_uc010iir.2_Silent_p.E7E|THAP6_uc010iis.1_5'Flank|THAP6_uc003him.2_5'Flank|THAP6_uc003hin.2_5'Flank|THAP6_uc011cbm.1_5'Flank|THAP6_uc010iiu.1_5'Flank|THAP6_uc003hio.1_5'Flank|THAP6_uc010iiv.2_5'Flank	NM_015436	NP_056251	Q96PM5	ZN363_HUMAN	ring finger and CHY zinc finger domain	7					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein autoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nuclear speck|ubiquitin ligase complex	electron carrier activity|p53 binding|protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TGGCGCCATCTTCCCGGGCCG	0.602000													10	53					0	0	0.008291	0	0
KDM3B	51780	broad.mit.edu	37	5	137766032	137766032	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr5:137766032A>G	uc003lcy.1	+	22	5188	c.4988A>G	c.(4987-4989)TAT>TGT	p.Y1663C	KDM3B_uc010jew.1_Missense_Mutation_p.Y1319C|KDM3B_uc011cys.1_Missense_Mutation_p.Y695C	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1663	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AAGCGACTCTATGAGGAGTAT	0.463000													24	131					0	0	0.021523	0	0
C6orf211	79624	broad.mit.edu	37	6	151789725	151789725	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr6:151789725T>G	uc003qok.1	+	5	1065	c.806T>G	c.(805-807)TTG>TGG	p.L269W	C6orf211_uc011ees.1_Missense_Mutation_p.L150W	NM_024573	NP_078849	Q9H993	CF211_HUMAN	hypothetical protein LOC79624	269							protein binding				0			BRCA - Breast invasive adenocarcinoma(37;0.183)	OV - Ovarian serous cystadenocarcinoma(155;5.27e-11)		GCCGACTTCTTGTTGTCCTCT	0.328000													11	102					0	0	0.010729	0	0
COL28A1	340267	broad.mit.edu	37	7	7412962	7412963	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr7:7412962_7412963CC>AT	uc003src.1	-	32	2691_2692	c.2574_2575GG>AT	c.(2572-2577)AAGGAT>AAATAT	p.D859Y	COL28A1_uc011jxe.1_Missense_Mutation_p.D542Y	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	859	VWFA 2.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TTGAAGTCATCCTTGCTGGAGA	0.515000													21	82					0	0	0.004672	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974720	21974720	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr9:21974720G>C	uc003zpk.2	-	1	319	c.107C>G	c.(106-108)GCG>GGG	p.A36G	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Missense_Mutation_p.A36G|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	36	ANK 1.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(23)|p.L32_L37del(6)|p.A36T(3)|p.G35fs*13(1)|p.V28_V51del(1)|p.A36fs*8(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GTTGGGCAGCGCCCCCGCCTC	0.726000		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			6	64					0	0	0.023175	0	0
LOC442421	442421	broad.mit.edu	37	9	66499891	66499891	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr9:66499891T>C	uc004aee.1	+	1	701	c.701T>C	c.(700-702)ATG>ACG	p.M234T	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						ACCATCGCCATGTACATGAAG	0.572000													4	23					0	0	0.010729	0	0
CTSL3	392360	broad.mit.edu	37	9	90401711	90401711	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr9:90401711A>C	uc004apm.1	+	5	569	c.563A>C	c.(562-564)CAG>CCG	p.Q188P		NR_027917				RecName: Full=Putative cathepsin L-like protein 3;          Short=Cathepsin L-like protein; AltName: Full=HCTSL-s;											ovary(1)	1						GAGGCTCTGCAGATGCTAAGT	0.478000													5	101					0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	X	155252783	155252783	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chrX:155252783G>T	uc004fnw.1	+	6	1486	c.827G>T	c.(826-828)AGT>ATT	p.S276I	uc004fnx.3_Missense_Mutation_p.S62I	NM_182905	NP_878908			WAS protein family homolog 1																		CTCATGTACAGTGCCGACCTG	0.607000													3	9					0.004672	0.00622933	0.004672	1	0
SFRS2IP	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr12:46320707_46320708delTC	uc001rox.2	-	11	3063_3064	c.2776_2777delGA	c.(2776-2778)GAAfs	p.E926fs	SFRS2IP_uc001row.2_Frame_Shift_Del_p.E611fs|SFRS2IP_uc001roy.1_Frame_Shift_Del_p.E1000fs	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	926	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GGTTCTCCTTTCTCTCTCTCTC	0.446													8	267	---	---	---	---					
RXFP2	122042	broad.mit.edu	37	13	32376429	32376429	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr13:32376429delA	uc001utt.2	+	18	2223	c.2152delA	c.(2152-2154)AAAfs	p.K718fs	RXFP2_uc010aba.2_Frame_Shift_Del_p.K677fs	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	718	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TTTCAAAATTAAAAAAAAAAG	0.348													7	183	---	---	---	---					
RNMT	8731	broad.mit.edu	37	18	13731629	13731630	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	g.chr18:13731629_13731630insT	uc002ksk.1	+	2	180_181	c.113_114insT	c.(112-114)GCTfs	p.A38fs	RNMT_uc002ksl.1_Frame_Shift_Ins_p.A38fs|RNMT_uc002ksm.1_Frame_Shift_Ins_p.A38fs|RNMT_uc010dlk.2_Frame_Shift_Ins_p.A38fs|RNMT_uc010xae.1_Intron	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	38					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						AACACAACAGCTTCTGGGACTG	0.371													31	111	---	---	---	---					
