Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	16889992	16889992	+	RNA	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:16889992G>A	uc001ayw.2	-	1		c.91C>T								Homo sapiens AB5 mRNA, 3' untranslated region.																		CTGTGTTAAAGATGGATCAGC	0.418000													5	12					0	0	0.000602214	0	0
KIAA1522	57648	broad.mit.edu	37	1	33236795	33236795	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:33236795C>A	uc001bvv.2	+	6	1974	c.1838C>A	c.(1837-1839)CCA>CAA	p.P613Q	KIAA1522_uc001bvu.1_Missense_Mutation_p.P672Q|KIAA1522_uc010ohm.1_Missense_Mutation_p.P624Q|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	613	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CCCTTCTCCCCACCTCCCTCC	0.647000													33	73					3.33393e-15	1.38853e-14	0.000953801	1	0
SLC5A9	200010	broad.mit.edu	37	1	48708165	48708165	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:48708165C>T	uc001cro.2	+	13	1766	c.1714C>T	c.(1714-1716)CTC>TTC	p.L572F	SLC5A9_uc001crn.2_Missense_Mutation_p.L597F|SLC5A9_uc010omt.1_Missense_Mutation_p.L586F|SLC5A9_uc001crp.2_Missense_Mutation_p.L239F|SLC5A9_uc010omu.1_Missense_Mutation_p.L239F|SLC5A9_uc009vyt.1_RNA	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	572	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						GAACTGCCCCCTCTCTGAGCT	0.597000													8	126					0	0	0.000157383	0	0
CTH	1491	broad.mit.edu	37	1	70895506	70895506	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:70895506T>C	uc001dfd.2	+	6	762	c.618T>C	c.(616-618)TCT>TCC	p.S206S	CTH_uc009wbl.1_RNA|CTH_uc001dfe.2_Silent_p.S162S|CTH_uc010oqq.1_Silent_p.S174S	NM_001902	NP_001893	P32929	CGL_HUMAN	cystathionase isoform 1	206					cysteine biosynthetic process|hydrogen sulfide biosynthetic process|protein homotetramerization|protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine	cytoplasm|nucleus	cystathionine gamma-lyase activity|L-cysteine desulfhydrase activity|pyridoxal phosphate binding			lung(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	CTGATATTTCTATGTATTCTG	0.353000													18	44					0	0	0.00188189	0	0
ABCA4	24	broad.mit.edu	37	1	94528186	94528186	+	Silent	SNP	A	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:94528186A>T	uc001dqh.2	-	13	1988	c.1884T>A	c.(1882-1884)GCT>GCA	p.A628A	ABCA4_uc010otn.1_Silent_p.A628A	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	628	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTCCAACTGGAGCCTCCGCCT	0.572000													14	34					0	0	0.000308642	0	0
USH2A	7399	broad.mit.edu	37	1	216373415	216373415	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:216373415G>A	uc001hku.1	-	17	3752	c.3365C>T	c.(3364-3366)TCC>TTC	p.S1122F	USH2A_uc001hkv.2_Missense_Mutation_p.S1122F	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1122	Extracellular (Potential).|Fibronectin type-III 1.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATGTAATAGGAATATTTGGT	0.363000										HNSCC(13;0.011)			26	47					0	0	0.000720815	0	0
CDHR1	92211	broad.mit.edu	37	10	85968003	85968003	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr10:85968003T>C	uc001kcv.2	+	11	1037	c.1037T>C	c.(1036-1038)CTC>CCC	p.L346P	CDHR1_uc001kcw.2_Missense_Mutation_p.L346P|CDHR1_uc009xst.2_Missense_Mutation_p.L105P	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	346	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						ATTGTGGACCTCAACAACCAC	0.602000													3	67					0	0	6.4e-05	0	0
GPR123	84435	broad.mit.edu	37	10	134896356	134896356	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr10:134896356C>T	uc001llw.2	+	7	1368	c.1368C>T	c.(1366-1368)CCC>CCT	p.P456P				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		GACGCAGGCCCTGTGCGGTGA	0.667000													4	10					0	0	0.000602214	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													5	51					0	0	0.00198382	0	0
OR4C15	81309	broad.mit.edu	37	11	55322355	55322355	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr11:55322355G>C	uc010rig.1	+	1	573	c.573G>C	c.(571-573)AGG>AGC	p.R191S		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCATGAACAGGAGGCTCTGTG	0.498000										HNSCC(20;0.049)			39	93					0	0	0.00222228	0	0
DDX11	1663	broad.mit.edu	37	12	31242861	31242861	+	Silent	SNP	A	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr12:31242861A>C	uc001rjt.1	+	9	1173	c.922A>C	c.(922-924)AGG>CGG	p.R308R	DDX11_uc010sjw.1_3'UTR|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Silent_p.R308R|DDX11_uc001rjs.1_Silent_p.R308R|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Silent_p.R308R|DDX11_uc001rjw.1_Silent_p.R282R|DDX11_uc001rjx.1_5'UTR|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	308	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					AAAGAGGAGGAGGCAGGAGAA	0.587000										Multiple Myeloma(12;0.14)			3	12					0	0	0.00024832	0	0
LRIG3	121227	broad.mit.edu	37	12	59283874	59283874	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr12:59283874T>A	uc001sqr.2	-	5	809	c.563A>T	c.(562-564)GAC>GTC	p.D188V	LRIG3_uc009zqh.2_Missense_Mutation_p.D128V|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	188	LRR 5.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			GGCCAAATTGTCAAAATACCC	0.413000													69	141					0	0	0.000781405	0	0
SLC7A1	6541	broad.mit.edu	37	13	30096467	30096467	+	Silent	SNP	C	T	T	rs150705194		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr13:30096467C>T	uc001uso.2	-	8	1563	c.1176G>A	c.(1174-1176)TCG>TCA	p.S392S		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	392	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CAACGGCACCCGAGGCTAATG	0.458000													54	144					0	0	0.000781405	0	0
GPC6	10082	broad.mit.edu	37	13	94482740	94482740	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr13:94482740C>G	uc001vlt.2	+	3	1285	c.653C>G	c.(652-654)GCC>GGC	p.A218G	GPC6_uc010tig.1_Missense_Mutation_p.A218G|GPC6_uc001vlu.1_Missense_Mutation_p.A148G	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	218						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				TTCATTGCTGCCAGGACCTTT	0.498000													15	31					0	0	0.000566183	0	0
RAP2A	5911	broad.mit.edu	37	13	98086836	98086836	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr13:98086836G>A	uc001vnd.2	+	1	362	c.112G>A	c.(112-114)GAC>AAC	p.D38N		NM_021033	NP_066361	P10114	RAP2A_HUMAN	RAP2A, member of RAS oncogene family precursor	38	Effector region (Probable).				actin cytoskeleton reorganization|cellular protein localization|establishment of protein localization|positive regulation of protein autophosphorylation|Rap protein signal transduction|regulation of dendrite morphogenesis|regulation of JNK cascade	recycling endosome membrane	GTP binding|GTPase activity|protein binding			central_nervous_system(1)	1	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.166)			CACCATCGAGGACTTCTACCG	0.627000													50	98					0	0	0.000781405	0	0
GPR18	2841	broad.mit.edu	37	13	99907879	99907879	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr13:99907879G>A	uc001voe.3	-	3	749	c.248C>T	c.(247-249)GCA>GTA	p.A83V	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.A83V	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	83	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	TTCATCTTTTGCATAATAAAA	0.383000													17	45					0	0	0.000422831	0	0
OR4K2	390431	broad.mit.edu	37	14	20345257	20345257	+	Silent	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr14:20345257C>A	uc001vwh.1	+	1	831	c.831C>A	c.(829-831)ATC>ATA	p.I277I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTATACCATCTTTACTCCCA	0.368000													26	107					7.01153e-11	2.73956e-10	0.00127121	1	0
CLEC14A	161198	broad.mit.edu	37	14	38724316	38724316	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr14:38724316C>T	uc001wum.1	-	1	1259	c.912G>A	c.(910-912)AGG>AGA	p.R304R		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	304	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CCGGCGGGCGCCTGGTGGGCA	0.657000													41	80					0	0	0.00170553	0	0
FERMT2	10979	broad.mit.edu	37	14	53386065	53386065	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr14:53386065T>A	uc001xad.2	-	3	222	c.167A>T	c.(166-168)AAA>ATA	p.K56I	FERMT2_uc001xac.2_Missense_Mutation_p.K56I|FERMT2_uc001xae.2_Missense_Mutation_p.K56I|FERMT2_uc001xaf.2_Missense_Mutation_p.K56I	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	56					actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					AGACCAATCTTTTTTTACATC	0.333000													26	60					0	0	0.000586117	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713349	70713349	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr14:70713349T>C	uc010ttg.1	-	1	1170	c.519A>G	c.(517-519)TTA>TTG	p.L173L		NR_003951				SubName: Full=ADAM21-like protein;												0						ACGTATGACCTAACTCATGGG	0.423000													50	210					0	0	0.000781405	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102466716	102466716	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr14:102466716G>A	uc001yks.2	+	18	4218	c.4054G>A	c.(4054-4056)GTT>ATT	p.V1352I		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1352	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GCAACCCTGGGTTTCAGTACA	0.428000													25	52					0	0	0.000586117	0	0
ADAM6	8755	broad.mit.edu	37	14	107062535	107062535	+	RNA	SNP	C	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr14:107062535C>G	uc010tyt.1	-	130		c.6143G>C								Parts of antibodies, mostly variable regions.												0						CTGCCACCAGCAGGAGGAAGA	0.512000													3	55					0	0	6.4e-05	0	0
ATP10A	57194	broad.mit.edu	37	15	25924510	25924510	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr15:25924510G>A	uc010ayu.2	-	21	4584	c.4478C>T	c.(4477-4479)GCA>GTA	p.A1493V		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1493	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CCTTGAAGATGCTCCTATAAG	0.413000													22	54					0	0	0.00188189	0	0
SYNM	23336	broad.mit.edu	37	15	99670274	99670274	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr15:99670274A>T	uc002bup.2	+	6	1829	c.1709A>T	c.(1708-1710)AAG>ATG	p.K570M	SYNM_uc002buo.2_Missense_Mutation_p.K570M|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	570	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						CCGAAGGAGAAGAGCGTGCGA	0.502000													11	36					0	0	0.000978159	0	0
ZNF598	90850	broad.mit.edu	37	16	2052644	2052644	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr16:2052644C>T	uc002cof.1	-	6	570	c.555G>A	c.(553-555)GGG>GGA	p.G185G	ZNF598_uc002coe.1_5'Flank	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	185						intracellular	zinc ion binding			lung(1)|breast(1)	2						AGAGCGGGTGCCCACGGTGCG	0.602000													9	36					0	0	0.000442599	0	0
CLUAP1	23059	broad.mit.edu	37	16	3554721	3554721	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr16:3554721T>C	uc002cvk.1	+	2	129	c.24T>C	c.(22-24)AAT>AAC	p.N8N	CLUAP1_uc002cvj.1_Silent_p.N8N|CLUAP1_uc002cvl.1_Silent_p.N8N	NM_015041	NP_055856	Q96AJ1	CLUA1_HUMAN	clusterin associated protein 1 isoform 1	8						nucleus	protein binding			ovary(1)|breast(1)|pancreas(1)	3						CTTGGACAGATTTCACAGAGA	0.383000													19	71					0	0	0.000958276	0	0
TIAF1	9220	broad.mit.edu	37	17	27400954	27400954	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr17:27400954C>G	uc002hdv.1	-	1	1674	c.264G>C	c.(262-264)AGG>AGC	p.R88S	MYO18A_uc010wbc.1_3'UTR|MYO18A_uc002hds.2_3'UTR|MYO18A_uc010csa.1_3'UTR|MYO18A_uc002hdt.1_3'UTR|MYO18A_uc002hdu.1_3'UTR	NM_004740	NP_004731	O95411	TIAF1_HUMAN	TGFB1-induced anti-apoptotic factor 1	88					anti-apoptosis|apoptosis|I-kappaB kinase/NF-kappaB cascade	nucleus					0	Lung NSC(42;0.015)		Epithelial(11;1.19e-05)|all cancers(11;6.57e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000153)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TTGGATCAGCCCTGAACTGCT	0.532000													115	111					0	0	0.000781405	0	0
TMEM101	84336	broad.mit.edu	37	17	42089524	42089524	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr17:42089524C>T	uc002ieu.2	-	4	571	c.546G>A	c.(544-546)CTG>CTA	p.L182L	TMEM101_uc010wis.1_Silent_p.L124L	NM_032376	NP_115752	Q96IK0	TM101_HUMAN	transmembrane protein 101	182	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		Breast(137;0.0264)|Prostate(33;0.0861)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GCACGAAGAACAGCTGGATCA	0.587000													21	76					0	0	0.00047179	0	0
TOB1	10140	broad.mit.edu	37	17	48941062	48941062	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr17:48941062T>C	uc002isw.2	-	1	352	c.317A>G	c.(316-318)AAG>AGG	p.K106R	TOB1_uc010wmy.1_Missense_Mutation_p.K106R|TOB1_uc010wmz.1_Missense_Mutation_p.K106R	NM_005749	NP_005740	P50616	TOB1_HUMAN	transducer of ERBB2, 1	106					negative regulation of cell proliferation		SH3/SH2 adaptor activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			CACTGGTCCCTTTTCACCAAT	0.418000											OREG0024576	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	138					0	0	6.4e-05	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386306	56386306	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr17:56386306G>T	uc002ivx.3	-	22	5198	c.4327C>A	c.(4327-4329)CTG>ATG	p.L1443M	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.L1383M|BZRAP1_uc010wnt.1_Missense_Mutation_p.L1443M	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1443						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTGGGGCCCAGTCGTCCAGAG	0.692000													34	98					5.91797e-21	2.52012e-20	0.0024448	1	0
KCNH6	81033	broad.mit.edu	37	17	61623123	61623123	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr17:61623123C>T	uc002jay.2	+	14	2925	c.2845C>T	c.(2845-2847)CTA>TTA	p.L949L	KCNH6_uc010wpl.1_Silent_p.L790L|KCNH6_uc010wpm.1_Silent_p.L913L|KCNH6_uc002jaz.1_Silent_p.L860L	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	949	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	AGCCTCACCTCTACATCCCCT	0.587000													30	104					0	0	0.00127121	0	0
EVPL	2125	broad.mit.edu	37	17	74004559	74004559	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr17:74004559C>T	uc002jqi.2	-	22	4955	c.4727G>A	c.(4726-4728)CGG>CAG	p.R1576Q	EVPL_uc010wss.1_Missense_Mutation_p.R1598Q|EVPL_uc010wst.1_Missense_Mutation_p.R1046Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1576	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGACTCCTCCCGGGACCAGGT	0.731000													8	19					0	0	0.000274275	0	0
ANKRD12	23253	broad.mit.edu	37	18	9257291	9257291	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr18:9257291T>C	uc002knv.2	+	9	4283	c.4026T>C	c.(4024-4026)ACT>ACC	p.T1342T	ANKRD12_uc002knw.2_Silent_p.T1319T|ANKRD12_uc002knx.2_Silent_p.T1319T|ANKRD12_uc010dkx.1_Silent_p.T1049T	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1342						nucleus				ovary(2)|central_nervous_system(1)	3						CAGGAGATACTAGTCCTTCTC	0.398000													37	66					0	0	0.00111076	0	0
Unknown	0	broad.mit.edu	37	18	14184029	14184029	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr18:14184029T>C	uc010xag.1	+	3	718	c.420T>C	c.(418-420)GCT>GCC	p.A140A	uc002ksv.1_Missense_Mutation_p.L19P					RecName: Full=Putative ankyrin repeat domain-containing protein 20A5;																		TCCATTATGCTGTGTATAGTG	0.438000													7	276					0	0	0.000274275	0	0
ASXL3	80816	broad.mit.edu	37	18	31263418	31263418	+	Silent	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr18:31263418A>G	uc010dmg.1	+	8	820	c.765A>G	c.(763-765)GGA>GGG	p.G255G	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAACCCCAGGATCTATTCTTG	0.418000													12	35					0	0	0.00185496	0	0
ELAC1	55520	broad.mit.edu	37	18	48513160	48513160	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr18:48513160G>C	uc002lez.2	+	4	903	c.797G>C	c.(796-798)TGC>TCC	p.C266S	SMAD4_uc010xdo.1_Intron	NM_018696	NP_061166	Q9H777	RNZ1_HUMAN	elaC homolog 1	266					tRNA 3'-trailer cleavage	nucleus	endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0		Colorectal(6;0.0269)|all_epithelial(6;0.0729)		Colorectal(21;0.000943)|COAD - Colon adenocarcinoma(17;0.0398)|READ - Rectum adenocarcinoma(32;0.0894)|STAD - Stomach adenocarcinoma(97;0.18)		GTAAAACTGTGCTTTGAAGCA	0.478000													12	28					0	0	0.00136819	0	0
ALPK2	115701	broad.mit.edu	37	18	56196435	56196435	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr18:56196435A>G	uc002lhj.3	-	6	5603	c.5389T>C	c.(5389-5391)TTC>CTC	p.F1797L	ALPK2_uc002lhk.1_Missense_Mutation_p.F1128L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1797	Ig-like 2.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGTTCAGGGAACATCTCAGCT	0.294000													25	62					0	0	0.000878237	0	0
PLIN4	729359	broad.mit.edu	37	19	4512468	4512468	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr19:4512468C>T	uc002mar.1	-	3	1462	c.1462G>A	c.(1462-1464)GTG>ATG	p.V488M	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	488	27 X 33 AA approximate tandem repeat.|12.					lipid particle|plasma membrane					0						CCAGTGGACACAGCATCTTTA	0.612000													53	127					0	0	0.000781405	0	0
ZNF763	284390	broad.mit.edu	37	19	12089881	12089881	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr19:12089881T>C	uc002msw.2	+	4	1297	c.1142T>C	c.(1141-1143)TTT>TCT	p.F381S	ZNF763_uc010xmf.1_Missense_Mutation_p.F401S|ZNF763_uc002msv.2_Missense_Mutation_p.F384S|ZNF763_uc010xmg.1_Missense_Mutation_p.F259S	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	381					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						TCTTATAAGTTTTCAAACACA	0.398000													50	77					0	0	0.000781405	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13915960	13915960	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr19:13915960A>G	uc002mxh.1	+	3	899	c.710A>G	c.(709-711)AAT>AGT	p.N237S	ZSWIM4_uc010xng.1_Missense_Mutation_p.N43S	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	237							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			AACTTGGTGAATGGTAAGGGC	0.607000											OREG0025298	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	39					0	0	0.00244969	0	0
JAK3	3718	broad.mit.edu	37	19	17946018	17946018	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr19:17946018T>C	uc002nhn.3	-	15	2021	c.1921A>G	c.(1921-1923)AAA>GAA	p.K641E	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Missense_Mutation_p.K641E	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	641	Protein kinase 1.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GGCAGGCCTTTGTCCTCCTAA	0.577000		2	Mis		acute megakaryocytic leukemia|								11	34					0	0	0.000978159	0	0
ZNF626	199777	broad.mit.edu	37	19	20808028	20808028	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr19:20808028G>A	uc002npb.1	-	4	805	c.655C>T	c.(655-657)CAT>TAT	p.H219Y	ZNF626_uc002npc.1_Missense_Mutation_p.H143Y	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	219	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATTTTCTTATGTCTAGTAAGG	0.383000													11	33					0	0	0.000673444	0	0
HTR2B	3357	broad.mit.edu	37	2	231988374	231988374	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr2:231988374C>A	uc002vro.2	-	2	610	c.105G>T	c.(103-105)CAG>CAT	p.Q35H	PSMD1_uc002vrm.1_Intron|PSMD1_uc010fxu.1_Intron|PSMD1_uc002vrn.1_Intron|HTR2B_uc010fxv.2_Missense_Mutation_p.Q35H	NM_000867	NP_000858	P41595	5HT2B_HUMAN	5-hydroxytryptamine (serotonin) receptor 2B	35	Extracellular (By similarity).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cardiac muscle hypertrophy|cellular response to calcium ion|cellular response to temperature stimulus|cGMP biosynthetic process|embryonic morphogenesis|ERK1 and ERK2 cascade|G-protein coupled receptor internalization|heart morphogenesis|intestine smooth muscle contraction|negative regulation of apoptosis|negative regulation of autophagy|neural crest cell migration|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|phosphorylation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of cytokine secretion|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAP kinase activity|positive regulation of nitric-oxide synthase activity|protein kinase C signaling cascade|regulation of behavior|release of sequestered calcium ion into cytosol|response to drug|vasoconstriction	cytoplasm|integral to membrane|plasma membrane	calcium channel activity|drug binding|G-protein alpha-subunit binding|phosphatidylinositol phospholipase C activity|Ras GTPase activator activity|serotonin binding|serotonin receptor activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;4.48e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0141)	Chlorprothixene(DB01239)|Eletriptan(DB00216)|Fenfluramine(DB00574)|Methotrimeprazine(DB01403)|Minaprine(DB00805)|Quetiapine(DB01224)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Triflupromazine(DB00508)	TTGATTCTGTCTGTAATCCAG	0.418000													43	87					1.34996e-11	5.44294e-11	0.00222228	1	0
COL6A3	1293	broad.mit.edu	37	2	238283616	238283616	+	Missense_Mutation	SNP	C	T	T	rs78427077	by1000genomes	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr2:238283616C>T	uc002vwl.2	-	8	3403	c.3118G>A	c.(3118-3120)GTC>ATC	p.V1040I	COL6A3_uc002vwo.2_Missense_Mutation_p.V834I|COL6A3_uc010znj.1_Missense_Mutation_p.V433I|COL6A3_uc002vwq.2_Missense_Mutation_p.V834I|COL6A3_uc002vwr.2_Missense_Mutation_p.V633I	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1040	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCGCTCCTGACGCCCTCAGAG	0.567000													20	48					0	0	0.00121646	0	0
GDF5	8200	broad.mit.edu	37	20	34025518	34025518	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr20:34025518C>T	uc002xck.1	-	1	510	c.191G>A	c.(190-192)AGC>AAC	p.S64N	GDF5_uc010gfc.1_Missense_Mutation_p.S64N|GDF5_uc010zvc.1_Missense_Mutation_p.S64N	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	64					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CCCACCATAGCTGTGACCCCC	0.647000													7	15					0	0	0.00198382	0	0
KCNB1	3745	broad.mit.edu	37	20	47989844	47989844	+	Silent	SNP	A	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr20:47989844A>C	uc002xur.1	-	2	2417	c.2253T>G	c.(2251-2253)GGT>GGG	p.G751G	KCNB1_uc002xus.1_Silent_p.G751G	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	751	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACTGGTGGACACCCGCCTCAA	0.572000													18	153					0	0	0.000680045	0	0
SALL4	57167	broad.mit.edu	37	20	50405586	50405586	+	Silent	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr20:50405586G>A	uc002xwh.3	-	3	2657	c.2556C>T	c.(2554-2556)TCC>TCT	p.S852S	SALL4_uc010gii.2_Silent_p.S415S|SALL4_uc002xwi.3_Silent_p.S75S	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	852					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TCATCCCTGGGGACAATGTCG	0.577000													18	37					0	0	0.00074312	0	0
KRTAP13-1	140258	broad.mit.edu	37	21	31768620	31768620	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr21:31768620G>T	uc002yoa.2	+	1	229	c.216G>T	c.(214-216)GAG>GAT	p.E72D		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	72	3.|5 X 10 AA approximate repeats.					intermediate filament				ovary(1)	1						CCTATGTGGAGTCCAGCCCCT	0.602000													23	46					1.85244e-09	7.09167e-09	0.00047179	1	0
NDUFV3	4731	broad.mit.edu	37	21	44317078	44317078	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr21:44317078T>C	uc002zcn.2	+	2	156	c.90T>C	c.(88-90)TCT>TCC	p.S30S	NDUFV3_uc002zcm.2_Silent_p.S30S	NM_001001503	NP_001001503	P56181	NDUV3_HUMAN	NADH-ubiquinone oxidoreductase flavoprotein 3	30					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I|nucleus	NADH dehydrogenase (ubiquinone) activity			ovary(2)	2				STAD - Stomach adenocarcinoma(101;0.0606)	NADH(DB00157)	GACTTGCTTCTACGGTTTCTT	0.413000													21	54					0	0	0.00047179	0	0
PPM1F	9647	broad.mit.edu	37	22	22287929	22287929	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr22:22287929A>G	uc002zvp.1	-	5	695	c.581T>C	c.(580-582)TTT>TCT	p.F194S	PPM1F_uc011aik.1_Missense_Mutation_p.F90S|PPM1F_uc002zvq.2_Missense_Mutation_p.F194S	NM_014634	NP_055449	P49593	PPM1F_HUMAN	protein phosphatase 1F	194					apoptosis|protein dephosphorylation	protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(2)|large_intestine(1)|breast(1)|kidney(1)	5	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.155)		AAACACAGCAAAGTAGGCGCG	0.667000													21	27					0	0	0.00229938	0	0
SFI1	9814	broad.mit.edu	37	22	31924806	31924806	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr22:31924806C>T	uc003ale.2	+	3	616	c.223C>T	c.(223-225)CAT>TAT	p.H75Y	SFI1_uc003ald.1_Missense_Mutation_p.H75Y|SFI1_uc003alf.2_Missense_Mutation_p.H75Y|SFI1_uc003alg.2_Intron|SFI1_uc011alp.1_Intron|SFI1_uc011alq.1_Missense_Mutation_p.H75Y|SFI1_uc003alh.2_Intron	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	75					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						TCGTGGCACACATACTTGTAC	0.483000													34	73					0	0	0.000814825	0	0
APOL1	8542	broad.mit.edu	37	22	36661665	36661665	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr22:36661665C>T	uc003apf.2	+	6	951	c.783C>T	c.(781-783)AAC>AAT	p.N261N	APOL1_uc011amn.1_Silent_p.N138N|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.N277N|APOL1_uc011amo.1_Silent_p.N138N|APOL1_uc011amp.1_Silent_p.N261N|APOL1_uc011amq.1_Silent_p.N243N|APOL1_uc010gwx.2_Silent_p.N138N	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	261					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						TGGGTGAGAACATATCCAACT	0.498000													16	36					0	0	0.000422831	0	0
TNRC6B	23112	broad.mit.edu	37	22	40669533	40669533	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr22:40669533A>G	uc011aor.1	+	7	3281	c.3070A>G	c.(3070-3072)ACT>GCT	p.T1024A	TNRC6B_uc003aym.2_Missense_Mutation_p.T277A|TNRC6B_uc003ayn.3_Missense_Mutation_p.T971A|TNRC6B_uc003ayo.2_Missense_Mutation_p.T828A	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1024					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CTGGAACACCACTGGCTCTCA	0.562000													4	8					0	0	0.000602214	0	0
CRTAP	10491	broad.mit.edu	37	3	33156008	33156008	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:33156008C>T	uc003cfl.3	+	1	559	c.439C>T	c.(439-441)CCC>TCC	p.P147S	CRTAP_uc010hfz.2_Missense_Mutation_p.P147S|CRTAP_uc003cfm.2_5'UTR|CRTAP_uc003cfn.2_5'UTR	NM_006371	NP_006362	O75718	CRTAP_HUMAN	cartilage associated protein precursor	147						proteinaceous extracellular matrix	binding				0						GCGCCGCGAGCCCTACAAGTT	0.502000													11	19					0	0	0.00185496	0	0
PTH1R	5745	broad.mit.edu	37	3	46939563	46939563	+	Splice_Site	SNP	G	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:46939563G>T	uc003cqm.2	+	7	628	c.425_splice	c.e7-1	p.G142_splice	PTH1R_uc003cqn.2_Splice_Site_p.G142_splice	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor							cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						TGGACCTGCAGGCCATGCCTA	0.617000									Ollier_disease_/_Maffuci_syndrome				33	125					1.56442e-22	6.73767e-22	0.0024448	1	0
USP19	10869	broad.mit.edu	37	3	49148708	49148709	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:49148708_49148709TC>AT	uc003cwd.1	-	21	3159_3160	c.2998_2999GA>AT	c.(2998-3000)GAG>ATG	p.E1000M	USP19_uc003cwa.2_Missense_Mutation_p.E808M|USP19_uc003cvz.3_Missense_Mutation_p.E1103M|USP19_uc011bcg.1_Missense_Mutation_p.E1091M|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.E758M|USP19_uc011bch.1_Missense_Mutation_p.E1101M	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	1000	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TAGCCGCTGCTCTCGGTTGGAT	0.545000													46	49					0	0	6.4e-05	0	0
ATP2C1	27032	broad.mit.edu	37	3	130686204	130686204	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:130686204A>G	uc003enl.2	+	16	1471	c.1249A>G	c.(1249-1251)AGA>GGA	p.R417G	ATP2C1_uc011blg.1_Missense_Mutation_p.R451G|ATP2C1_uc011blh.1_Missense_Mutation_p.R412G|ATP2C1_uc011bli.1_Missense_Mutation_p.R451G|ATP2C1_uc003enk.2_Missense_Mutation_p.R401G|ATP2C1_uc003enm.2_Missense_Mutation_p.R417G|ATP2C1_uc003enn.2_Missense_Mutation_p.R401G|ATP2C1_uc003eno.2_Missense_Mutation_p.R417G|ATP2C1_uc003enp.2_Missense_Mutation_p.R417G|ATP2C1_uc003enq.2_Missense_Mutation_p.R417G|ATP2C1_uc003enr.2_Missense_Mutation_p.R417G|ATP2C1_uc003ens.2_Missense_Mutation_p.R417G|ATP2C1_uc003ent.2_Missense_Mutation_p.R417G|ATP2C1_uc003enu.2_Missense_Mutation_p.R95G	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	417	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	TGCTGTAATTAGAAACAATAC	0.383000									Hailey-Hailey_disease				29	75					0	0	0.00178596	0	0
DZIP1L	199221	broad.mit.edu	37	3	137805834	137805834	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:137805834A>G	uc003erq.2	-	7	1394	c.1031T>C	c.(1030-1032)CTG>CCG	p.L344P	DZIP1L_uc003err.1_Missense_Mutation_p.L344P	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	344	Potential.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						CTCTTCATGCAGTTCCTTCAC	0.373000													23	79					0	0	0.000878237	0	0
EIF4G1	1981	broad.mit.edu	37	3	184041746	184041746	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:184041746T>C	uc003fnp.2	+	16	2651	c.2453T>C	c.(2452-2454)ATG>ACG	p.M818T	EIF4G1_uc003fno.1_Missense_Mutation_p.M759T|EIF4G1_uc010hxw.1_Missense_Mutation_p.M654T|EIF4G1_uc003fnt.2_Missense_Mutation_p.M529T|EIF4G1_uc003fnq.2_Missense_Mutation_p.M731T|EIF4G1_uc003fnr.2_Missense_Mutation_p.M654T|EIF4G1_uc010hxx.2_Missense_Mutation_p.M825T|EIF4G1_uc003fns.2_Missense_Mutation_p.M778T|EIF4G1_uc010hxy.2_Missense_Mutation_p.M825T|EIF4G1_uc003fnv.3_Missense_Mutation_p.M819T|EIF4G1_uc003fnu.3_Missense_Mutation_p.M818T|EIF4G1_uc003fnw.2_Missense_Mutation_p.M825T|EIF4G1_uc003fnx.2_Missense_Mutation_p.M623T|EIF4G1_uc003fny.3_Missense_Mutation_p.M622T|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	818	eIF3/EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TATGCCAACATGTGCCGCTGC	0.517000													28	77					0	0	0.00106085	0	0
LAP3	51056	broad.mit.edu	37	4	17590497	17590497	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr4:17590497G>A	uc003gph.1	+	7	922	c.760G>A	c.(760-762)GGA>AGA	p.G254R		NM_015907	NP_056991	P28838	AMPL_HUMAN	leucine aminopeptidase 3	254					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding				0						TGTGGCCAAAGGATCTGACGA	0.453000													43	66					0	0	0.000680045	0	0
TMEM156	80008	broad.mit.edu	37	4	38990526	38990526	+	Silent	SNP	G	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr4:38990526G>T	uc003gto.2	-	4	792	c.684C>A	c.(682-684)ATC>ATA	p.I228I	TMEM156_uc010ifj.2_Silent_p.I228I	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	228	Helical; (Potential).					integral to membrane				skin(1)	1						TAGTGAGGATGATCAAAAATA	0.353000													25	82					1.33986e-20	5.64231e-20	0.000720815	1	0
PRKG2	5593	broad.mit.edu	37	4	82074809	82074809	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr4:82074809C>A	uc003hmh.2	-	6	993	c.979G>T	c.(979-981)GCA>TCA	p.A327S	PRKG2_uc011ccf.1_5'UTR|PRKG2_uc011ccg.1_5'UTR|PRKG2_uc011cch.1_Missense_Mutation_p.A327S	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	327	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TTTCCTTTTGCCAAAATGAAA	0.328000													8	42					0.000274275	0.00102921	0.000274275	1	0
OSTC	58505	broad.mit.edu	37	4	109571838	109571838	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr4:109571838C>T	uc003hzb.1	+	1	98	c.27C>T	c.(25-27)TTC>TTT	p.F9F		NM_021227	NP_067050	Q9NRP0	OSTC_HUMAN	DC2 protein	9	Cytoplasmic (Potential).		F -> L (in a breast cancer sample; somatic mutation).			integral to membrane|oligosaccharyltransferase complex		p.F9L(1)		breast(1)	1						GTGTCCCGTTCTTAGTGCTCG	0.597000													34	72					0	0	0.000692331	0	0
NDUFS6	4726	broad.mit.edu	37	5	1801592	1801592	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr5:1801592C>A	uc003jcy.2	+	1	84	c.61C>A	c.(61-63)CTG>ATG	p.L21M	MRPL36_uc003jcx.3_5'Flank	NM_004553	NP_004544	O75380	NDUS6_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 6,	21					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)	1					NADH(DB00157)	GGCGCGGAGCCTGCCCCTGGG	0.701000													17	18					3.99206e-14	1.62687e-13	0.000958276	1	0
JAKMIP2	9832	broad.mit.edu	37	5	147010974	147010974	+	Splice_Site	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr5:147010974A>G	uc003loq.1	-	14	2257	c.1875_splice	c.e14+1	p.K625_splice	JAKMIP2_uc011dbx.1_Splice_Site_p.K583_splice|JAKMIP2_uc003lor.1_Splice_Site_p.K604_splice|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Splice_Site_p.K625_splice	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein							Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATATCTGCCTACCTTAACACC	0.388000													12	34					0	0	0.000978159	0	0
C6orf195	154386	broad.mit.edu	37	6	2623684	2623684	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:2623684C>A	uc003mtw.2	-	3	1358	c.373G>T	c.(373-375)GAA>TAA	p.E125*		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	125											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				CAGAAAGCTTCATTGCTAATC	0.493000													24	37					5.45024e-15	2.24526e-14	0.00047179	1	0
C6orf223	221416	broad.mit.edu	37	6	43970795	43970795	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:43970795C>T	uc003own.2	+	4	679	c.661C>T	c.(661-663)CGC>TGC	p.R221C	uc003owm.1_Intron|C6orf223_uc003owo.2_Missense_Mutation_p.R201C	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	221											0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			ACGGCTAATGCGCTCTAATTA	0.637000													32	41					0	0	0.00283554	0	0
KIAA1919	91749	broad.mit.edu	37	6	111587895	111587895	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:111587895A>T	uc003puv.3	+	4	1552	c.1130A>T	c.(1129-1131)CAA>CTA	p.Q377L		NM_153369	NP_699200	Q5TF39	NAGT1_HUMAN	sodium-dependent glucose transporter 1	377	Extracellular (Potential).				carbohydrate transport|sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(3)	3		all_cancers(87;2.35e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.055)|all cancers(137;0.0871)|Epithelial(106;0.0884)		GGAATTCTTCAAGGAAAATAC	0.403000													56	128					0	0	0.000781405	0	0
MLLT4	4301	broad.mit.edu	37	6	168276027	168276027	+	Silent	SNP	A	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:168276027A>C	uc003qwd.2	+	5	730	c.588A>C	c.(586-588)CGA>CGC	p.R196R	MLLT4_uc003qwb.1_Silent_p.R196R|MLLT4_uc003qwc.1_Silent_p.R197R	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	197					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		AAAATTCTCGACTGGCTGCTG	0.368000			T	MLL	AL								77	162					0	0	0.000781405	0	0
THBS2	7058	broad.mit.edu	37	6	169622311	169622311	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:169622311G>T	uc003qwt.2	-	20	3502	c.3254C>A	c.(3253-3255)ACG>AAG	p.T1085K		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	1085	TSP C-terminal.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CGTGTTCCCCGTGTGCCACAG	0.662000													18	67					1.10923e-09	4.28978e-09	0.00278032	1	0
CCM2	83605	broad.mit.edu	37	7	45104062	45104062	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr7:45104062A>G	uc003tmo.2	+	4	435	c.289A>G	c.(289-291)AGA>GGA	p.R97G	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Missense_Mutation_p.R39G|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Missense_Mutation_p.R97G|CCM2_uc011kcb.1_Missense_Mutation_p.R60G|CCM2_uc011kcc.1_Missense_Mutation_p.R90G|CCM2_uc003tms.2_Missense_Mutation_p.R118G	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	97	PID.				endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						TTCCTTCCAGAGAGCCCACCA	0.567000									Familial_Cerebral_Cavernous_Angioma				7	49					0	0	0.000442599	0	0
PCLO	27445	broad.mit.edu	37	7	82532016	82532016	+	Silent	SNP	A	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr7:82532016A>G	uc003uhx.2	-	9	13768	c.13479T>C	c.(13477-13479)CCT>CCC	p.P4493P	PCLO_uc003uhv.2_Silent_p.P4493P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4424					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCTTGCGTGAGGAAAGATGT	0.284000													42	38					0	0	0.000781405	0	0
AGFG2	3268	broad.mit.edu	37	7	100160553	100160553	+	Silent	SNP	C	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr7:100160553C>T	uc003uvf.2	+	9	1291	c.1155C>T	c.(1153-1155)CCC>CCT	p.P385P	AGFG2_uc010lgy.2_Intron	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	385	Pro-rich.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						CGTTCCAGCCCAATGGCTTGG	0.602000													7	25					0	0	0.00198382	0	0
CHCHD3	54927	broad.mit.edu	37	7	132523165	132523165	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr7:132523165T>G	uc003vre.2	-	6	654	c.518A>C	c.(517-519)AAG>ACG	p.K173T	CHCHD3_uc010lmi.2_RNA|CHCHD3_uc003vrf.2_Missense_Mutation_p.K178T|CHCHD3_uc010lmj.2_Missense_Mutation_p.S36R	NM_017812	NP_060282	Q9NX63	CHCH3_HUMAN	coiled-coil-helix-coiled-coil-helix domain	173					inner mitochondrial membrane organization|mitochondrial fusion	mitochondrial inner membrane	protein complex scaffold				0						TTACTTGAACTTTGCTTCCAC	0.333000													30	29					0	0	0.00209593	0	0
TRPV6	55503	broad.mit.edu	37	7	142569741	142569741	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr7:142569741C>A	uc003wbx.1	-	15	2113	c.1897G>T	c.(1897-1899)GTG>TTG	p.V633L	TRPV6_uc003wbw.1_Missense_Mutation_p.V419L|TRPV6_uc010lou.1_Missense_Mutation_p.V504L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	633	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CTGTCTTCCACCCTGTGGAAT	0.557000													20	96					5.35356e-11	2.13579e-10	0.00278032	1	0
NUB1	51667	broad.mit.edu	37	7	151064971	151064971	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr7:151064971C>A	uc003wjx.2	+	10	1089	c.1084C>A	c.(1084-1086)CTG>ATG	p.L362M	NUB1_uc003wjw.2_Missense_Mutation_p.L338M|NUB1_uc010lqc.2_RNA|uc003wjz.1_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	338					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		AGAGAAGGTACTGTTTCTAAG	0.323000											OREG0018452	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	17					0.00116845	0.00434158	0.00116845	1	0
ASTN2	23245	broad.mit.edu	37	9	119202962	119202962	+	Silent	SNP	G	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr9:119202962G>T	uc004bjs.1	-	22	3809	c.3708C>A	c.(3706-3708)GTC>GTA	p.V1236V	ASTN2_uc004bjr.1_Silent_p.V1232V|ASTN2_uc004bjt.1_Silent_p.V1185V|ASTN2_uc004bjp.1_Silent_p.V329V|ASTN2_uc004bjq.1_Silent_p.V288V|ASTN2_uc011lxr.1_Silent_p.V288V|ASTN2_uc011lxs.1_Silent_p.V288V|ASTN2_uc011lxt.1_Silent_p.V288V|ASTN2_uc004bjo.1_Silent_p.V17V	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1236	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGTGGTGCTGGACTCGGAACA	0.502000													42	69					6.4771e-29	2.82163e-28	0.0025221	1	0
GOLGA2	2801	broad.mit.edu	37	9	131028577	131028577	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr9:131028577G>A	uc011maw.1	-	8	602	c.589C>T	c.(589-591)CAG>TAG	p.Q197*	GOLGA2_uc010mxw.2_Intron|GOLGA2_uc004bul.1_Nonsense_Mutation_p.Q98*|GOLGA2_uc004bum.1_Nonsense_Mutation_p.Q71*	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	197	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						TCTTCCAACTGATCCGTAATT	0.498000													32	56					0	0	0.00283554	0	0
UBAC1	10422	broad.mit.edu	37	9	138839743	138839743	+	Silent	SNP	T	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr9:138839743T>C	uc004cgt.2	-	4	560	c.342A>G	c.(340-342)CAA>CAG	p.Q114Q	UBAC1_uc004cgs.1_Silent_p.Q114Q|UBAC1_uc004cgu.2_RNA	NM_016172	NP_057256	Q9BSL1	UBAC1_HUMAN	ubiquitin associated domain containing 1	114						Golgi apparatus|plasma membrane	protein binding			skin(2)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.1e-06)|Epithelial(140;7.79e-06)		CTTTCTGGTCTTGTTTTTTCT	0.517000													14	19					0	0	0.00185496	0	0
RPL10	6134	broad.mit.edu	37	X	153627911	153627911	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chrX:153627911G>A	uc004fkm.2	+	4	354	c.166G>A	c.(166-168)GAA>AAA	p.E56K	uc010nuv.1_5'Flank|RPL10_uc004fko.2_Missense_Mutation_p.E56K|RPL10_uc004fkn.1_Missense_Mutation_p.E56K|RPL10_uc004fkp.1_Missense_Mutation_p.E56K|RPL10_uc004fkq.1_RNA|RPL10_uc004fkr.1_5'Flank|SNORA70_uc010nux.1_5'Flank	NM_006013	NP_006004	P27635	RL10_HUMAN	ribosomal protein L10	56					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|endoplasmic reticulum	structural constituent of ribosome				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGTGTCAGATGAATATGAGCA	0.507000													46	30					0	0	0.000680045	0	0
TMEM52	339456	broad.mit.edu	37	1	1850628	1850636	+	In_Frame_Del	DEL	AGCGGCAGG	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:1850628_1850636delAGCGGCAGG	uc001aij.2	-	1	105_113	c.69_77delCCTGCCGCT	c.(67-78)CTCCTGCCGCTG>CTG	p.23_26LLPL>L	TMEM52_uc001aii.2_5'Flank	NM_178545	NP_848640	Q8NDY8	TMM52_HUMAN	transmembrane protein 52 precursor	23_26						integral to membrane					0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.82e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.75e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CACCTgcggcagcggcaggagcggcagga	0.569													3	5	---	---	---	---					
MRPL9	65005	broad.mit.edu	37	1	151735603	151735616	+	Frame_Shift_Del	DEL	CGCTCCACGATGAC	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:151735603_151735616delCGCTCCACGATGAC	uc001eyv.2	-	2	245_258	c.160_173delGTCATCGTGGAGCG	c.(160-174)GTCATCGTGGAGCGCfs	p.V54fs	MRPL9_uc009wmz.2_RNA|MRPL9_uc010pdk.1_Frame_Shift_Del_p.V54fs|MRPL9_uc009wna.1_Frame_Shift_Del_p.V54fs	NM_031420	NP_113608	Q9BYD2	RM09_HUMAN	mitochondrial ribosomal protein L9 precursor	54_58					translation	mitochondrial ribosome	structural constituent of ribosome			ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTTCCACCAGCGCTCCACGATGACCGTGCCCTGG	0.668													11	41	---	---	---	---					
PROX1	5629	broad.mit.edu	37	1	214170437	214170438	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr1:214170437_214170438insAT	uc001hkh.2	+	2	831_832	c.559_560insAT	c.(559-561)AATfs	p.N187fs	PROX1_uc001hkg.1_Frame_Shift_Ins_p.N187fs	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	187					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		ATTAAGGGGCAATGAAAATGAA	0.505													21	53	---	---	---	---					
C2CD3	26005	broad.mit.edu	37	11	73745646	73745646	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr11:73745646delG	uc001ouu.2	-	31	6116	c.5889delC	c.(5887-5889)TACfs	p.Y1963fs	C2CD3_uc001out.2_Intron	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	Error:Variant_position_missing_in_Q4AC94_after_alignment						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					AGTTACTTCAGTAACTACCTA	0.368													10	30	---	---	---	---					
HAPLN3	145864	broad.mit.edu	37	15	89422488	89422488	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr15:89422488delG	uc002bnc.2	-	4	634	c.506delC	c.(505-507)CCTfs	p.P169fs	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Frame_Shift_Del_p.P231fs	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	169	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					GGACTGGTAAGGAAAGACCAC	0.632											OREG0023445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	46	---	---	---	---					
SRCAP	10847	broad.mit.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr16:30736370_30736371insC	uc002dze.1	+	25	6010_6011	c.5625_5626insC	c.(5623-5628)CAGCCCfs	p.Q1875fs	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Frame_Shift_Ins_p.Q1670fs|SRCAP_uc010bzz.1_Frame_Shift_Ins_p.Q1445fs	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1875_1876	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CTCGACGCCAGCCCCCCCCACC	0.569													9	235	---	---	---	---					
PLEKHB2	55041	broad.mit.edu	37	2	131904282	131904282	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr2:131904282delC	uc002tsg.3	+	8	1165	c.605delC	c.(604-606)GCAfs	p.A202fs	PLEKHB2_uc002tsh.2_Intron|PLEKHB2_uc002tsj.3_Frame_Shift_Del_p.A201fs|PLEKHB2_uc002tsf.3_Frame_Shift_Del_p.A210fs|PLEKHB2_uc010zao.1_Frame_Shift_Del_p.A152fs|PLEKHB2_uc010zap.1_Frame_Shift_Del_p.H166fs|PLEKHB2_uc010zaq.1_Frame_Shift_Del_p.H158fs|PLEKHB2_uc002tsi.3_Frame_Shift_Del_p.A243fs	NM_001100623	NP_001094093	Q96CS7	PKHB2_HUMAN	pleckstrin homology domain containing, family B	202						membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.0828)		AGCGACCTGGCACTGGGCATG	0.507													83	229	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	62926391	62926395	+	RNA	DEL	GATAC	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr20:62926391_62926395delGATAC	uc002yio.1	+	2		c.498_502delGATAC								Homo sapiens chromosome 20 open reading frame 69, mRNA (cDNA clone MGC:141807 IMAGE:40035995), complete cds.																		GCTGAGCACTGATACAAAGAAAGAC	0.293													3	4	---	---	---	---					
DNAJC28	54943	broad.mit.edu	37	21	34861049	34861050	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr21:34861049_34861050insA	uc002yrv.2	-	2	1100_1101	c.651_652insT	c.(649-654)TTTGACfs	p.F217fs	DNAJC28_uc002yrw.2_Frame_Shift_Ins_p.F217fs	NM_017833	NP_060303	Q9NX36	DJC28_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 28	217_218							heat shock protein binding				0						CTGAGATTGTCAAAGTCTCCTT	0.386													51	154	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551103	42551104	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr21:42551103_42551104insC	uc002yyz.2	-	1	6063_6064	c.452_453insG	c.(451-453)TGAfs	p.*151fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	151											0		Prostate(19;2.29e-06)				AGTGAGGGTGTCAGGGTGAGGA	0.272													3	3	---	---	---	---					
AZI2	64343	broad.mit.edu	37	3	28382066	28382066	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:28382066delC	uc003ceb.2	-	2	575	c.43delG	c.(43-45)GAAfs	p.E15fs	AZI2_uc003cec.2_5'UTR|AZI2_uc003ced.2_Frame_Shift_Del_p.E15fs|AZI2_uc003cee.3_Frame_Shift_Del_p.E15fs|AZI2_uc003ceg.2_Frame_Shift_Del_p.E15fs|AZI2_uc011axd.1_Frame_Shift_Del_p.E15fs|AZI2_uc003cef.2_Frame_Shift_Del_p.E15fs	NM_022461	NP_071906	Q9H6S1	AZI2_HUMAN	5-azacytidine induced 2 isoform a	15						mitochondrion|plasma membrane				ovary(2)	2						TGGGCTTTTTCATGATTCAGA	0.348													50	80	---	---	---	---					
CISH	1154	broad.mit.edu	37	3	50645554	50645554	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:50645554delA	uc003dax.2	-	3	442	c.261delT	c.(259-261)ATTfs	p.I87fs	CISH_uc010hlq.2_Frame_Shift_Del_p.I104fs	NM_145071	NP_659508	Q9NSE2	CISH_HUMAN	cytokine-inducible SH2-containing protein	87	SH2.				intracellular signal transduction|negative regulation of signal transduction|regulation of cell growth	intracellular					0				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CGCTGGCCGTAATGGAACCCC	0.562													10	61	---	---	---	---					
MITF	4286	broad.mit.edu	37	3	69988260	69988261	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:69988260_69988261insT	uc003dnz.2	+	4	710_711	c.594_595insT	c.(592-597)AAGTTTfs	p.K198fs	MITF_uc011bgb.1_Frame_Shift_Ins_p.K146fs|MITF_uc003doa.2_Frame_Shift_Ins_p.K197fs|MITF_uc003dob.2_Frame_Shift_Ins_p.K182fs|MITF_uc003dod.2_Frame_Shift_Ins_p.K173fs|MITF_uc003doe.2_Frame_Shift_Ins_p.K91fs|MITF_uc003dof.2_Frame_Shift_Ins_p.K91fs	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	198_199					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		GATTTTATAAGTTTGAAGAGCA	0.441			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						38	37	---	---	---	---					
RASA2	5922	broad.mit.edu	37	3	141326509	141326518	+	Splice_Site	DEL	TTATTATTTA	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr3:141326509_141326518delTTATTATTTA	uc003etz.1	+	20	1934	c.1934_splice	c.e20-2	p.G645_splice	RASA2_uc010huq.1_Splice_Site_p.R649_splice|RASA2_uc003eua.1_Splice_Site_p.S646_splice	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2						intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						TTTACTTTTTTTATTATTTAGGCAAAGATG	0.305													21	12	---	---	---	---					
KDR	3791	broad.mit.edu	37	4	55981041	55981042	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr4:55981041_55981042insT	uc003has.2	-	5	959_960	c.657_658insA	c.(655-660)GTAGGGfs	p.V219fs	KDR_uc003hat.1_Frame_Shift_Ins_p.V219fs|KDR_uc011bzx.1_Frame_Shift_Ins_p.V219fs	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	219_220	Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GTCCTCTTACCTACAACGACAA	0.347			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			27	67	---	---	---	---					
KIAA1211	57482	broad.mit.edu	37	4	57182080	57182080	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr4:57182080delT	uc003hbk.2	+	8	2803	c.2412delT	c.(2410-2412)CCTfs	p.P804fs	KIAA1211_uc010iha.2_Frame_Shift_Del_p.P797fs|KIAA1211_uc011bzz.1_Frame_Shift_Del_p.P714fs|KIAA1211_uc003hbm.1_Frame_Shift_Del_p.P690fs	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	804										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CAAGCCTTCCTTACCCTCCGC	0.592													22	45	---	---	---	---					
GFRAL	389400	broad.mit.edu	37	6	55223709	55223709	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:55223709delC	uc003pcm.1	+	6	811	c.725delC	c.(724-726)TCAfs	p.S242fs		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	242	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACATTTCAGTCAAAATGCTGG	0.398													46	85	---	---	---	---					
HDAC2	3066	broad.mit.edu	37	6	114292110	114292112	+	In_Frame_Del	DEL	CTG	-	-			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chr6:114292110_114292112delCTG	uc003pwd.1	-	1	243_245	c.243_245delCAG	c.(241-246)AGCAGG>AGG	p.S81del	uc003pwf.2_Intron|HDAC2_uc003pwc.1_5'Flank|HDAC2_uc003pwe.1_5'UTR	NM_001527	NP_001518	Q92769	HDAC2_HUMAN	histone deacetylase 2	Error:Variant_position_missing_in_Q92769_after_alignment					blood coagulation|dendrite development|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|maintenance of chromatin silencing|negative regulation of apoptosis|negative regulation of cell cycle|negative regulation of neuron projection development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of proteolysis|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|ESC/E(Z) complex|NuRD complex|Sin3 complex	chromatin binding|enzyme binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|sequence-specific DNA binding|transcription factor binding			skin(2)|ovary(1)|central_nervous_system(1)	4		all_cancers(87;0.000629)|all_epithelial(87;0.00274)|Colorectal(196;0.0317)|all_lung(197;0.24)		all cancers(137;0.00318)|OV - Ovarian serous cystadenocarcinoma(136;0.00569)|Epithelial(106;0.0112)|GBM - Glioblastoma multiforme(226;0.0832)	Vorinostat(DB02546)	GCTCCTCCTCctgctgctgctgc	0.522													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11426	11427	+	RNA	INS	-	C	C			TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	g.chrM:11426_11427insC	uc004cov.3	+	1		c.849_850insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		CCCATGTCGAAGCCCCCATCGC	0.446													8	1	---	---	---	---					
