Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CAP1	10487	broad.mit.edu	37	1	40535481	40535481	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr1:40535481T>C	uc001cfa.3	+	9	1157	c.928T>C	c.(928-930)TCC>CCC	p.S310P	CAP1_uc001cey.3_Missense_Mutation_p.S310P|CAP1_uc001cez.3_Missense_Mutation_p.S310P|CAP1_uc009vvz.2_Missense_Mutation_p.S310P|CAP1_uc010oje.1_Missense_Mutation_p.S227P	NM_006367	NP_006358	Q01518	CAP1_HUMAN	adenylyl cyclase-associated protein	310					activation of adenylate cyclase activity|axon guidance|establishment or maintenance of cell polarity|platelet activation|platelet degranulation|signal transduction	plasma membrane	actin binding			ovary(1)	1	Lung NSC(20;5.03e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;4.63e-18)|Epithelial(16;1.27e-16)|all cancers(16;2.3e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AACCAGCCCATCCCCCAAACG	0.522000													5	45					0	0	0.000878237	0	0
ZYG11B	79699	broad.mit.edu	37	1	53287196	53287196	+	Silent	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr1:53287196T>C	uc001cuj.2	+	14	2325	c.2130T>C	c.(2128-2130)CAT>CAC	p.H710H	ZYG11B_uc010onj.1_Silent_p.H631H|ZYG11B_uc009vzh.2_Silent_p.H132H	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	710							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CTGATCCCCATGTCCAACAGA	0.433000													30	36					0	0	0.001512	0	0
FLG	2312	broad.mit.edu	37	1	152276908	152276908	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr1:152276908G>A	uc001ezu.1	-	3	10490	c.10454C>T	c.(10453-10455)GCC>GTC	p.A3485V		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3485	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCTGCTGGCACTTCTGGA	0.557000									Ichthyosis				127	238					0	0	0.000781405	0	0
PYCR2	29920	broad.mit.edu	37	1	226109611	226109611	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr1:226109611C>G	uc001hpq.2	-	4	642	c.487G>C	c.(487-489)GAA>CAA	p.E163Q	LEFTY1_uc010pvj.1_Intron|PYCR2_uc001hpp.2_Missense_Mutation_p.E127Q|PYCR2_uc001hpr.2_Missense_Mutation_p.E116Q|PYCR2_uc001hps.1_Missense_Mutation_p.E116Q	NM_013328	NP_037460	Q96C36	P5CR2_HUMAN	pyrroline-5-carboxylate reductase family, member	163					proline biosynthetic process	cytoplasm	binding|pyrroline-5-carboxylate reductase activity				0	Breast(184;0.197)				L-Proline(DB00172)|NADH(DB00157)	AGGTCCTCTTCCACCTCAGTG	0.637000													7	20					0	0	8.12818e-05	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													3	71					0	0	6.4e-05	0	0
DUSP13	51207	broad.mit.edu	37	10	76868897	76868897	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr10:76868897G>A	uc001jws.2	-	1	74	c.19C>T	c.(19-21)CCA>TCA	p.P7S	DUSP13_uc001jwu.2_5'UTR|DUSP13_uc001jww.2_Missense_Mutation_p.P7S|DUSP13_uc009xrs.2_5'UTR|DUSP13_uc001jwt.2_5'UTR|DUSP13_uc001jwv.2_5'UTR|SAMD8_uc001jwx.1_5'Flank|SAMD8_uc001jwy.1_5'Flank	NM_001007271	NP_001007272	Q6B8I1	MDSP_HUMAN	muscle-restricted dual specificity phosphatase	7						cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					CCCAGCTCTGGGAGAGAGGTC	0.627000													22	30					0	0	0.000295444	0	0
DPYSL4	10570	broad.mit.edu	37	10	134012450	134012450	+	Silent	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr10:134012450C>T	uc009ybb.2	+	8	940	c.786C>T	c.(784-786)GAC>GAT	p.D262D		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	262					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		GGGCGGCCGACGCCATCGCTC	0.677000													7	51					0	0	0.000157383	0	0
DPP3	10072	broad.mit.edu	37	11	66272197	66272197	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr11:66272197C>T	uc001oig.1	+	17	2055	c.1993C>T	c.(1993-1995)CGT>TGT	p.R665C	DPP3_uc001oif.1_Missense_Mutation_p.R665C|DPP3_uc010rpe.1_Missense_Mutation_p.R654C|DPP3_uc001oih.1_Silent_p.C32C	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	665					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						GGTGCTGCTGCGTAAGGAATC	0.592000													10	140					0	0	0.00185496	0	0
RSF1	51773	broad.mit.edu	37	11	77412531	77412531	+	Silent	SNP	G	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr11:77412531G>T	uc001oyn.2	-	6	1863	c.1743C>A	c.(1741-1743)ATC>ATA	p.I581I	RSF1_uc001oym.2_Silent_p.I329I	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	581					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			GACATTCTAGGATTGGTGGGC	0.403000													88	140					3.05217e-42	5.28025e-41	0.000781405	1	0
ATM	472	broad.mit.edu	37	11	108206609	108206609	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr11:108206609A>C	uc001pkb.1	+	56	8574	c.8189A>C	c.(8188-8190)CAG>CCG	p.Q2730P	ATM_uc009yxr.1_Missense_Mutation_p.Q2730P|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.Q1382P	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2730	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GTCATGCAACAGGTCTTCCAG	0.348000			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			15	31					0	0	0.000422831	0	0
C11orf1	64776	broad.mit.edu	37	11	111753250	111753250	+	Silent	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr11:111753250C>T	uc001pmd.2	+	2	541	c.204C>T	c.(202-204)ACC>ACT	p.T68T	C11orf1_uc001pme.2_Silent_p.T108T	NM_022761	NP_073598	Q9H5F2	CK001_HUMAN	hypothetical protein LOC64776	68						nucleus					0		all_cancers(61;1.26e-15)|all_epithelial(67;9.52e-10)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|Medulloblastoma(222;0.0228)|all_neural(223;0.0281)		all cancers(92;6.28e-09)|Epithelial(105;4.11e-08)|OV - Ovarian serous cystadenocarcinoma(223;1.52e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)		CAAACCGTACCCTGATGGGCA	0.438000													22	43					0	0	0.000720815	0	0
LRP6	4040	broad.mit.edu	37	12	12311914	12311914	+	Silent	SNP	G	A	A	rs151241193	byFrequency	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr12:12311914G>A	uc001rah.3	-	12	2782	c.2640C>T	c.(2638-2640)CTC>CTT	p.L880L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.L880L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	880	Extracellular (Potential).|Beta-propeller 3.|LDL-receptor class B 15.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				AGTGAAAGACGAGGATGTCCA	0.537000													23	41					0	0	0.000878237	0	0
MANSC1	54682	broad.mit.edu	37	12	12483324	12483324	+	Silent	SNP	C	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr12:12483324C>A	uc001rai.1	-	4	1191	c.933G>T	c.(931-933)ACG>ACT	p.T311T	MANSC1_uc010shm.1_Silent_p.T245T|MANSC1_uc001raj.1_Silent_p.T277T|MANSC1_uc009zht.1_Silent_p.T230T	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	311	Thr-rich.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		CTTTCGAGTCCGTAGGTGCCT	0.468000													7	99					0.000274275	0.00447638	0.000274275	1	0
FKBP11	51303	broad.mit.edu	37	12	49319118	49319118	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr12:49319118C>G	uc001rsp.2	-	1	213	c.94G>C	c.(94-96)GAA>CAA	p.E32Q	FKBP11_uc010sma.1_5'Flank|FKBP11_uc001rsq.3_Missense_Mutation_p.E32Q|FKBP11_uc010smb.1_Missense_Mutation_p.E32Q	NM_016594	NP_057678	Q9NYL4	FKB11_HUMAN	FK506 binding protein 11 isoform 1 precursor	32					protein folding	integral to membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						ACGGGACTTTCGGTTTCGAGC	0.597000													11	17					0	0	0.00185496	0	0
TCL1B	9623	broad.mit.edu	37	14	96152848	96152848	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr14:96152848G>A	uc001yez.2	+	1	86	c.44G>A	c.(43-45)CGT>CAT	p.R15H	TCL1B_uc001yew.2_Intron|TCL1B_uc001yex.2_Intron|TCL1B_uc010avj.2_Intron|TCL1B_uc001yfa.2_Missense_Mutation_p.R15H	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	15										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CCCCCTGGCCGTCTGTGGATC	0.627000													50	58					0	0	0.000781405	0	0
LOC723972	723972	broad.mit.edu	37	15	35529913	35529913	+	RNA	SNP	C	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr15:35529913C>G	uc001ziy.2	+	1		c.387C>G				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						CCAACCTGAACGACTACCGAG	0.473000													29	65					0	0	0.00058488	0	0
HERC1	8925	broad.mit.edu	37	15	63978661	63978661	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr15:63978661T>C	uc002amp.2	-	34	6270	c.6122A>G	c.(6121-6123)CAG>CGG	p.Q2041R		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2041	B30.2/SPRY.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TAGGCAACACTGAGCTTTCTC	0.473000													109	147					0	0	0.000781405	0	0
MIR629	693214	broad.mit.edu	37	15	70371784	70371784	+	RNA	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr15:70371784C>T	hsa-mir-629|MI0003643	-			c.24C>T			TLE3_uc002ask.2_Intron|TLE3_uc002asl.2_Intron|TLE3_uc010ukd.1_Intron|TLE3_uc010bik.1_Intron|TLE3_uc010bil.1_Intron|TLE3_uc002asn.2_Intron|TLE3_uc002asm.2_Intron|TLE3_uc002asp.2_Intron|TLE3_uc002aso.2_Intron																	0						CAACGTAAACCCAGCCCCTCC	0.587000													12	18					0	0	0.00136819	0	0
Unknown	0	broad.mit.edu	37	16	32077580	32077580	+	RNA	SNP	A	G	G	rs28541432	by1000genomes	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr16:32077580A>G	uc010vfu.1	+	1		c.22A>G								Homo sapiens mRNA for immunoglobulin heavy chain, VHDJH rearrangement : VHLI26.																		ACTCTGTGAAAGGCCGATTCA	0.517000													7	351					0	0	8.12818e-05	0	0
RANBP10	57610	broad.mit.edu	37	16	67840265	67840265	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr16:67840265G>A	uc002eud.2	-	1	291	c.175C>T	c.(175-177)CCC>TCC	p.P59S	RANBP10_uc010ceo.2_5'UTR|RANBP10_uc010vju.1_Missense_Mutation_p.P59S|RANBP10_uc010vjv.1_5'UTR|RANBP10_uc010vjx.1_Missense_Mutation_p.P59S|RANBP10_uc010vjy.1_5'UTR|TSNAXIP1_uc010cep.2_5'Flank|TSNAXIP1_uc010vjz.1_5'Flank|TSNAXIP1_uc002euf.3_5'Flank|TSNAXIP1_uc010vka.1_5'Flank|TSNAXIP1_uc010vkb.1_5'Flank|TSNAXIP1_uc002eug.3_5'Flank|TSNAXIP1_uc002euh.3_5'Flank|TSNAXIP1_uc002eui.3_5'Flank|TSNAXIP1_uc002euj.2_5'Flank	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	59	B30.2/SPRY.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		TTGTCCTTGGGGCTCCAGGAG	0.642000													6	16					0	0	0.00116845	0	0
DNAH9	1770	broad.mit.edu	37	17	11520831	11520831	+	Silent	SNP	G	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr17:11520831G>C	uc002gne.2	+	5	1076	c.1008G>C	c.(1006-1008)CGG>CGC	p.R336R		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	336	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCCAGCTGCGGCCCCTGCTCC	0.592000													13	36					0	0	0.00185496	0	0
RALBP1	10928	broad.mit.edu	37	18	9535719	9535719	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr18:9535719C>G	uc002kob.2	+	10	1975	c.1752C>G	c.(1750-1752)ATC>ATG	p.I584M	RALBP1_uc002koc.2_Missense_Mutation_p.I584M	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	584					chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						GCGAGGCCATCATCGAGCTGC	0.582000													8	7					0	0	0.000442599	0	0
MPPE1	65258	broad.mit.edu	37	18	11887001	11887001	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr18:11887001G>A	uc002kqf.2	-	7	1234	c.593C>T	c.(592-594)GCG>GTG	p.A198V	MPPE1_uc002kqn.2_Missense_Mutation_p.A198V|MPPE1_uc002kqg.2_RNA|MPPE1_uc002kqh.2_RNA|MPPE1_uc002kqi.2_RNA|MPPE1_uc002kqj.2_Missense_Mutation_p.A198V|MPPE1_uc002kqk.2_Missense_Mutation_p.A198V|MPPE1_uc002kql.2_Missense_Mutation_p.A198V|MPPE1_uc002kqm.2_Missense_Mutation_p.A198V|MPPE1_uc010dla.1_Missense_Mutation_p.A198V	NM_023075	NP_075563	Q53F39	MPPE1_HUMAN	metallophosphoesterase 1 precursor	198					ER to Golgi vesicle-mediated transport|GPI anchor biosynthetic process	cis-Golgi network|endoplasmic reticulum exit site|ER-Golgi intermediate compartment membrane|integral to membrane	GPI anchor binding|manganese ion binding|phosphoric diester hydrolase activity				0						CCCGTTCAGCGCCACGCTGTT	0.532000													27	31					0	0	0.00106085	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8661946	8661946	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr19:8661946A>C	uc002mkj.1	-	8	1239	c.965T>G	c.(964-966)GTG>GGG	p.V322G	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	322	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GCTGTGGTTCACGATGGATTT	0.572000													36	50					0	0	0.00058488	0	0
ZNF404	342908	broad.mit.edu	37	19	44377748	44377748	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr19:44377748C>G	uc002oxs.3	-	2	618	c.609G>C	c.(607-609)CAG>CAC	p.Q203H		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	206	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TATGAATTATCTGATGCTGAA	0.368000													53	78					0	0	0.000781405	0	0
ZNF578	147660	broad.mit.edu	37	19	53014896	53014896	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr19:53014896A>C	uc002pzp.3	+	6	1506	c.1262A>C	c.(1261-1263)CAT>CCT	p.H421P		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	196	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		CATAGACTTCATACTGGAGAG	0.383000													8	120					0	0	0.000157383	0	0
TPO	7173	broad.mit.edu	37	2	1488542	1488542	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr2:1488542G>A	uc002qww.2	+	9	1604	c.1513G>A	c.(1513-1515)GAC>AAC	p.D505N	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.D505N|TPO_uc002qwr.2_Missense_Mutation_p.D505N|TPO_uc002qwx.2_Missense_Mutation_p.D505N|TPO_uc010yio.1_Missense_Mutation_p.D332N|TPO_uc010yip.1_Missense_Mutation_p.D505N|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	505	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GAGGAGGCTGGACGCCAGCTT	0.642000													8	55					0	0	0.000157383	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr2:95522772T>C	uc010fhp.2	-	1		c.49A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCGCTCCACCTCCGCGGCGTC	0.682000													3	68					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179443931	179443931	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr2:179443931A>G	uc010zfg.1	-	269	60346	c.60122T>C	c.(60121-60123)ATA>ACA	p.I20041T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.I13736T|TTN_uc010zfi.1_Missense_Mutation_p.I13669T|TTN_uc010zfj.1_Missense_Mutation_p.I13544T|uc002umv.1_Missense_Mutation_p.I53V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20968							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCGTACACTATAAGAGTTGT	0.448000													35	124					0	0	0.00128727	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													3	58					0	0	6.4e-05	0	0
COL7A1	1294	broad.mit.edu	37	3	48602253	48602253	+	Silent	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr3:48602253G>A	uc003ctz.2	-	117	8782	c.8781C>T	c.(8779-8781)CGC>CGT	p.R2927R	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2927	Nonhelical region (NC2).|BPTI/Kunitz inhibitor.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GTGGGCAGCGGCGCTCGCAGG	0.662000													23	25					0	0	0.000295444	0	0
RBM15B	29890	broad.mit.edu	37	3	51431021	51431021	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr3:51431021A>T	uc003dbd.2	+	1	2291	c.2191A>T	c.(2191-2193)AGC>TGC	p.S731C		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	731	Interaction with Epstein-Barr virus BMLF1.|SPOC.				interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GTTGAAAAACAGCTGCTTCCC	0.512000													10	77					0	0	0.000442599	0	0
DHX36	170506	broad.mit.edu	37	3	154006708	154006708	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr3:154006708C>T	uc003ezy.3	-	17	2059	c.1978G>A	c.(1978-1980)GAC>AAC	p.D660N	DHX36_uc010hvq.2_Missense_Mutation_p.D646N|DHX36_uc003ezz.3_Missense_Mutation_p.D660N	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	660						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GATGGTGGGTCCATTAATCTA	0.308000													11	26					0	0	0.00185496	0	0
UGT2A1	10941	broad.mit.edu	37	4	70513331	70513331	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr4:70513331T>C	uc003hem.3	-	1	95	c.32A>G	c.(31-33)CAG>CGG	p.Q11R	UGT2A1_uc011caq.1_Missense_Mutation_p.Q11R|UGT2A1_uc010ihu.2_Missense_Mutation_p.Q11R|UGT2A1_uc010iht.2_Missense_Mutation_p.Q11R	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	11					detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						GAGACTTATCTGAAGGGAGAA	0.363000													11	22					0	0	0.00136819	0	0
C4orf26	152816	broad.mit.edu	37	4	76489342	76489342	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr4:76489342C>T	uc003hip.1	+	2	121	c.86C>T	c.(85-87)ACG>ATG	p.T29M	C4orf26_uc011cbn.1_RNA|C4orf26_uc011cbo.1_Missense_Mutation_p.R44C	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	29						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GAGGTATTTACGCCTCCTGGA	0.527000													34	46					0	0	0.00128727	0	0
UGT3A2	167127	broad.mit.edu	37	5	36035804	36035804	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr5:36035804G>A	uc003jjz.1	-	7	1661	c.1568C>T	c.(1567-1569)ACA>ATA	p.T523I	UGT3A2_uc011cos.1_Missense_Mutation_p.T489I|UGT3A2_uc011cot.1_Missense_Mutation_p.T221I	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	523	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTGGCCTTATGTCTCCTTCAC	0.582000													15	30					0	0	0.00074312	0	0
DDX4	54514	broad.mit.edu	37	5	55088515	55088515	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr5:55088515G>T	uc003jqg.3	+	17	1423	c.1349G>T	c.(1348-1350)CGC>CTC	p.R450L	DDX4_uc010ivz.2_Missense_Mutation_p.R430L|DDX4_uc003jqh.3_Missense_Mutation_p.R416L|DDX4_uc003jqj.2_Missense_Mutation_p.R301L	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	450	Helicase ATP-binding.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				GAAGCTGATCGCATGTTGGAT	0.353000													21	30					3.62473e-10	6.14783e-09	0.00188189	1	0
PCDHGB7	56099	broad.mit.edu	37	5	140798706	140798706	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr5:140798706G>A	uc003lkn.1	+	1	1425	c.1280G>A	c.(1279-1281)AGG>AAG	p.R427K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.R427K|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	427	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCACAGACAGGGGCAAGCCT	0.512000													6	41					0	0	0.00116845	0	0
CCL26	10344	broad.mit.edu	37	7	75401236	75401236	+	Silent	SNP	G	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr7:75401236G>C	uc003udt.1	-	3	267	c.159C>G	c.(157-159)ACC>ACG	p.T53T		NM_006072	NP_006063	Q9Y258	CCL26_HUMAN	chemokine (C-C motif) ligand 26 precursor	53					cell-cell signaling|chemotaxis|immune response|inflammatory response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|signal transduction	extracellular space	chemokine activity				0						AGCTGTTACTGGTGAATTCAT	0.552000													3	83					0	0	6.4e-05	0	0
TMEM120A	83862	broad.mit.edu	37	7	75616533	75616533	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr7:75616533T>C	uc003ued.2	-	13	1093	c.989A>G	c.(988-990)CAC>CGC	p.H330R	TMEM120A_uc003uee.2_3'UTR|TMEM120A_uc003ueb.1_3'UTR|TMEM120A_uc003uec.2_Silent_p.A213A	NM_031925	NP_114131	Q9BXJ8	T120A_HUMAN	transmembrane protein 120A	330	Cytoplasmic (Potential).					integral to membrane					0						AAACTTGTGGTGCACAACCCT	0.597000													6	8					0	0	0.000157383	0	0
PION	54103	broad.mit.edu	37	7	77006706	77006706	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr7:77006706A>C	uc003ugf.2	-	9	657	c.578T>G	c.(577-579)GTG>GGG	p.V193G	PION_uc003ugg.1_5'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	193					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						ATTTTTAATCACCTAAAAATG	0.308000													10	85					0	0	0.00121646	0	0
TNPO3	23534	broad.mit.edu	37	7	128641219	128641219	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr7:128641219T>C	uc003vol.1	-	6	1140	c.766A>G	c.(766-768)ATT>GTT	p.I256V	TNPO3_uc003vom.1_Missense_Mutation_p.I190V|TNPO3_uc010lly.1_Missense_Mutation_p.I256V|TNPO3_uc010llz.1_Missense_Mutation_p.I256V	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	256					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						ACATTCTCAATGGCATAGAGA	0.483000													93	169					0	0	0.000781405	0	0
SFRS17A	8227	broad.mit.edu	37	X	1720241	1720241	+	Silent	SNP	C	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chrX:1720241C>T	uc004cqa.2	+	5	2038	c.1842C>T	c.(1840-1842)GAC>GAT	p.D614D	SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_Intron	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	614	Arg-rich.				B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCAGGGAGGACGGGAGGCCAC	0.751000													7	11					0	0	8.12818e-05	0	0
PRRG1	5638	broad.mit.edu	37	X	37312814	37312814	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chrX:37312814A>G	uc004ddn.2	+	5	850	c.597A>G	c.(595-597)ATA>ATG	p.I199M	PRRG1_uc004ddo.2_Missense_Mutation_p.I199M	NM_000950	NP_000941	O14668	TMG1_HUMAN	proline rich Gla (G-carboxyglutamic acid) 1	199	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	calcium ion binding			ovary(1)|breast(1)	2						ATGAGGACATAGTCAACTCCA	0.473000													3	62					0	0	6.4e-05	0	0
DOCK11	139818	broad.mit.edu	37	X	117707873	117707873	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chrX:117707873G>A	uc004eqp.2	+	12	1344	c.1281G>A	c.(1279-1281)ATG>ATA	p.M427I	DOCK11_uc004eqq.2_Missense_Mutation_p.M193I	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	427					blood coagulation	cytosol	GTP binding			ovary(3)	3						TCCGTGAAATGCTGTGGGGCT	0.448000													66	70					0	0	0.000781405	0	0
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	-	-	rs66529359		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr12:53069236_53069256delTAGCTGCTACCTCCGGAGCCA	uc001sau.1	-	9	1715_1735	c.1656_1676delTGGCTCCGGAGGTAGCAGCTA	c.(1654-1677)TATGGCTCCGGAGGTAGCAGCTAC>TAC	p.552_559YGSGGSSY>Y	KRT1_uc001sav.1_Splice_Site_p.G556_splice	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	552_559	Gly/Ser-rich.|Tail.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						tccggagccgtagctgctacctccggagccatagctgccac	0.000													3	4	---	---	---	---					
TARBP2	6895	broad.mit.edu	37	12	53895924	53895925	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr12:53895924_53895925insT	uc001sdo.2	+	2	667_668	c.179_180insT	c.(178-180)CCTfs	p.P60fs	MAP3K12_uc001sdm.1_5'Flank|MAP3K12_uc001sdn.1_5'Flank|TARBP2_uc009znb.2_Frame_Shift_Ins_p.P60fs|TARBP2_uc001sdp.2_Frame_Shift_Ins_p.P39fs|TARBP2_uc001sdq.2_5'UTR|TARBP2_uc001sdr.2_5'UTR|TARBP2_uc001sds.2_Frame_Shift_Ins_p.P60fs|TARBP2_uc001sdt.2_Frame_Shift_Ins_p.P39fs|TARBP2_uc001sdu.2_5'UTR|TARBP2_uc001sdv.2_RNA	NM_134323	NP_599150	Q15633	TRBP2_HUMAN	TAR RNA binding protein 2 isoform a	60	Sufficient for interaction with PRKRA.|DRBM 1.				miRNA loading onto RISC involved in gene silencing by miRNA|negative regulation of defense response to virus by host|negative regulation of protein kinase activity|positive regulation of viral genome replication|pre-miRNA processing|production of siRNA involved in RNA interference|regulation of transcription from RNA polymerase II promoter|regulation of translation|regulation of viral transcription|targeting of mRNA for destruction involved in RNA interference	cytosol|nucleus|perinuclear region of cytoplasm|RNA-induced silencing complex	double-stranded RNA binding|protein homodimerization activity|siRNA binding			central_nervous_system(1)	1						GCCCACCAGCCTAATTTCACCT	0.599													25	41	---	---	---	---					
ALPK3	57538	broad.mit.edu	37	15	85400008	85400009	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr15:85400008_85400009insA	uc002ble.2	+	6	2812_2813	c.2645_2646insA	c.(2644-2646)ATAfs	p.I882fs		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	882					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGTGAGAAGATACAGGAAGACA	0.554													26	25	---	---	---	---					
MAZ	4150	broad.mit.edu	37	16	29821421	29821435	+	In_Frame_Del	DEL	GCGGCGGCAGCGGCA	-	-	rs75194070		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr16:29821421_29821435delGCGGCGGCAGCGGCA	uc002dty.2	+	5	1471_1485	c.1303_1317delGCGGCGGCAGCGGCA	c.(1303-1317)GCGGCGGCAGCGGCAdel	p.AAAAA440del	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_In_Frame_Del_p.AAAAA417del|MAZ_uc002dtw.2_Splice_Site_p.D94_splice|MAZ_uc002dtx.2_3'UTR|MAZ_uc010bzg.2_In_Frame_Del_p.AAAAA135del|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_3'UTR|MAZ_uc010vdy.1_In_Frame_Del_p.AAAAA41del|uc002duc.1_RNA|PRRT2_uc002dud.2_5'Flank|PRRT2_uc002due.3_5'Flank|PRRT2_uc002duf.1_5'Flank	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	440_444	Poly-Ala.			Missing (in Ref. 3).	regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						TTGTCCAATggcggcggcagcggcagcggcggcag	0.474													15	82	---	---	---	---					
PHF20L1	51105	broad.mit.edu	37	8	133836263	133836264	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	g.chr8:133836263_133836264insA	uc003ytt.2	+	13	1919_1920	c.1594_1595insA	c.(1594-1596)GAAfs	p.E532fs	PHF20L1_uc003yts.2_Frame_Shift_Ins_p.E532fs|PHF20L1_uc011lja.1_Frame_Shift_Ins_p.E506fs|PHF20L1_uc003ytu.1_RNA	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	532	Lys-rich.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			ATCGAAAACAGAAAAAAAAGTG	0.317													206	192	---	---	---	---					
