Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TRIT1	54802	broad.mit.edu	37	1	40307511	40307511	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:40307511T>C	uc010oiz.1	-	11	1323	c.1309A>G	c.(1309-1311)ATA>GTA	p.I437V	TRIT1_uc001cec.3_RNA|TRIT1_uc001ced.3_Missense_Mutation_p.I133V|TRIT1_uc001cee.3_RNA|TRIT1_uc001cef.3_RNA|TRIT1_uc001ceg.3_Missense_Mutation_p.I191V|TRIT1_uc001ceh.3_Missense_Mutation_p.I191V|TRIT1_uc009vvv.2_Missense_Mutation_p.I270V|TRIT1_uc001cei.3_Missense_Mutation_p.I191V|TRIT1_uc001ceq.2_Missense_Mutation_p.I133V|TRIT1_uc001cek.2_Missense_Mutation_p.I133V|TRIT1_uc009vvx.2_RNA|TRIT1_uc001cel.2_RNA|TRIT1_uc001cem.2_Missense_Mutation_p.I355V|TRIT1_uc001cen.2_Missense_Mutation_p.I191V|TRIT1_uc001ceo.2_Missense_Mutation_p.I191V|TRIT1_uc001cep.2_Missense_Mutation_p.I191V	NM_017646	NP_060116	Q9H3H1	MOD5_HUMAN	tRNA isopentenyltransferase 1 precursor	437					tRNA processing	mitochondrion	ATP binding|metal ion binding|tRNA dimethylallyltransferase activity			ovary(1)	1	all_cancers(7;4.55e-14)|all_lung(5;1.23e-16)|all_epithelial(6;2.17e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;3.29e-18)|Epithelial(16;3.07e-17)|all cancers(16;6.21e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TGACTTTCTATGGTGTTGACA	0.418000													84	129					0	0	0.003610	0	0
MIER1	57708	broad.mit.edu	37	1	67423741	67423741	+	Splice_Site	SNP	G	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:67423741G>C	uc001dde.2	+	5	474	c.340_splice	c.e5-1	p.E114_splice	MIER1_uc010opf.1_Splice_Site_p.E78_splice|MIER1_uc009way.2_Splice_Site_p.E78_splice|MIER1_uc001ddc.2_Splice_Site_p.E114_splice|MIER1_uc001ddh.2_Splice_Site|MIER1_uc001ddf.2_Splice_Site_p.E78_splice|MIER1_uc001ddg.2_Splice_Site_p.E34_splice|MIER1_uc010opg.1_Splice_Site_p.E78_splice|MIER1_uc001ddj.1_Splice_Site_p.E61_splice|MIER1_uc001ddi.2_Splice_Site_p.E61_splice	NM_001077700	NP_001071168	Q8N108	MIER1_HUMAN	mesoderm induction early response 1 isoform b						positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)	1						GATTTATTTAGGAAGGCGACA	0.299000													13	29					0	0	0.001855	0	0
USP33	23032	broad.mit.edu	37	1	78163088	78163088	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:78163088C>A	uc001dht.2	-	25	3090	c.2743G>T	c.(2743-2745)GTT>TTT	p.V915F	USP33_uc009wca.1_RNA|USP33_uc001dhs.2_3'UTR|USP33_uc001dhu.2_Missense_Mutation_p.V884F	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	915	DUSP 2.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						CGCAGGATAACTTCAGGCCCT	0.373000													35	64					4.92203e-23	6.27423e-23	0.006230	1	0
ZNHIT6	54680	broad.mit.edu	37	1	86123544	86123544	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:86123544T>G	uc001dlh.2	-	9	1492	c.1358A>C	c.(1357-1359)AAA>ACA	p.K453T	ZNHIT6_uc010osc.1_Missense_Mutation_p.K414T	NM_017953	NP_060423	Q9NWK9	BCD1_HUMAN	zinc finger, HIT type 6	453					box C/D snoRNP assembly|ribosome biogenesis	pre-snoRNP complex	identical protein binding|metal ion binding			large_intestine(1)	1						GTGAAGAACTTTCATGTCATT	0.328000													4	127					0	0	0.000602	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668261	94668261	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:94668261C>A	uc001dqj.3	-	11	1351	c.982G>T	c.(982-984)GCA>TCA	p.A328S	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.A328S	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	328	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		AATAATTTTGCCTTTTTGAGA	0.388000													22	41					0.000229342	0.000268724	0.001882	1	0
BCL9	607	broad.mit.edu	37	1	147086309	147086309	+	Silent	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:147086309A>C	uc001epq.2	+	6	1194	c.454A>C	c.(454-456)AGG>CGG	p.R152R	BCL9_uc010ozr.1_Silent_p.R78R	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	152					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					TACAGCCCCCAGGTCTTCTAC	0.498000			T	IGH@|IGL@	B-ALL								22	36					0	0	0.004656	0	0
BCL9	607	broad.mit.edu	37	1	147086367	147086367	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:147086367A>G	uc001epq.2	+	6	1252	c.512A>G	c.(511-513)AAG>AGG	p.K171R	BCL9_uc010ozr.1_Missense_Mutation_p.K97R	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	171					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCTGCTCAGAAGACTCCAGCC	0.537000			T	IGH@|IGL@	B-ALL								29	25					0	0	0.007291	0	0
KPRP	448834	broad.mit.edu	37	1	152733695	152733695	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:152733695G>A	uc001fal.1	+	2	1689	c.1631G>A	c.(1630-1632)GGC>GAC	p.G544D		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	544						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGGTGCTGGCTGTGGGCCT	0.577000													43	55					0	0	0.003610	0	0
NID1	4811	broad.mit.edu	37	1	236195870	236195870	+	Silent	SNP	A	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:236195870A>G	uc001hxo.2	-	6	1470	c.1368T>C	c.(1366-1368)ACT>ACC	p.T456T	NID1_uc009xgd.2_Silent_p.T456T	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	456	Nidogen G2 beta-barrel.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	AGTGGAGGTCAGTGTTCTCAA	0.537000													21	35					0	0	0.001523	0	0
NLRP3	114548	broad.mit.edu	37	1	247597496	247597496	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr1:247597496G>T	uc001icr.2	+	7	2557	c.2419G>T	c.(2419-2421)GAC>TAC	p.D807Y	NLRP3_uc001ics.2_Missense_Mutation_p.D807Y|NLRP3_uc001icu.2_Missense_Mutation_p.D807Y|NLRP3_uc001icw.2_Missense_Mutation_p.D750Y|NLRP3_uc001icv.2_Missense_Mutation_p.D750Y|NLRP3_uc010pyw.1_Missense_Mutation_p.D785Y	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	807	LRR 3.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GGACCTGAGTGACAACGCCCT	0.577000													35	63					3.11337e-16	3.88335e-16	0.002836	1	0
DDX50	79009	broad.mit.edu	37	10	70670998	70670998	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr10:70670998C>T	uc001jou.2	+	4	742	c.635C>T	c.(634-636)CCA>CTA	p.P212L	DDX50_uc001jot.2_Missense_Mutation_p.P212L|DDX50_uc010qjc.1_Missense_Mutation_p.P212L	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	212	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						AGCCGCTCACCAAAGGTAATC	0.388000													5	80					0	0	0.001984	0	0
ECD	11319	broad.mit.edu	37	10	74906091	74906091	+	Missense_Mutation	SNP	C	G	G	rs147908494	byFrequency	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr10:74906091C>G	uc001jtn.2	-	9	1313	c.1070G>C	c.(1069-1071)CGG>CCG	p.R357P	ECD_uc009xqx.2_Missense_Mutation_p.R357P|ECD_uc009xqy.2_Missense_Mutation_p.R314P|ECD_uc001jto.2_Missense_Mutation_p.R56P	NM_007265	NP_009196	O95905	SGT1_HUMAN	suppressor of S. cerevisiae gcr2 isoform 1	357					regulation of glycolysis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	transcription coactivator activity			pancreas(1)	1	Prostate(51;0.0119)					TAGCCTTTCCCGGTACTGAGC	0.388000													6	29					0	0	0.001984	0	0
ADK	132	broad.mit.edu	37	10	76468112	76468112	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr10:76468112T>C	uc001jwi.2	+	11	1070	c.998T>C	c.(997-999)CTG>CCG	p.L333P	ADK_uc010qlb.1_Missense_Mutation_p.L276P|ADK_uc001jwj.2_Missense_Mutation_p.L316P|ADK_uc010qlc.1_Missense_Mutation_p.L298P|ADK_uc001jwl.2_Missense_Mutation_p.L103P	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	333					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	GACAAGCCTCTGACTGAATGT	0.453000													53	93					0	0	0.003610	0	0
NRAP	4892	broad.mit.edu	37	10	115381720	115381720	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr10:115381720C>T	uc001laj.2	-	24	2841	c.2677G>A	c.(2677-2679)GTA>ATA	p.V893I	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.V858I|NRAP_uc001lal.3_Missense_Mutation_p.V893I	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	893	Nebulin 22.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TTGTAGCCTACGTCTGTGGCT	0.522000													45	84					0	0	0.003610	0	0
NLRP6	171389	broad.mit.edu	37	11	281108	281108	+	Silent	SNP	G	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:281108G>C	uc010qvs.1	+	4	1374	c.1374G>C	c.(1372-1374)GCG>GCC	p.A458A	NLRP6_uc010qvt.1_Silent_p.A458A	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	458	NACHT.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GACGCAGGGCGCAGTTTGCCG	0.662000													60	101					0	0	0.003610	0	0
KCNQ1	3784	broad.mit.edu	37	11	2466713	2466713	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:2466713G>A	uc001lwn.2	+	1	493	c.385G>A	c.(385-387)GTC>ATC	p.V129I	KCNQ1_uc009ydo.1_Missense_Mutation_p.V129I	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	129	Helical; Name=Segment S1; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CCACTTCGCCGTGTGAGTATC	0.682000													10	15					0	0	0.006214	0	0
OR1S1	219959	broad.mit.edu	37	11	57982376	57982376	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:57982376G>A	uc010rkc.1	+	1	160	c.160G>A	c.(160-162)GGG>AGG	p.G54R		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CACTGTGATTGGGAACGGGCT	0.448000													79	116					0	0	0.003610	0	0
DPF2	5977	broad.mit.edu	37	11	65113439	65113439	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:65113439T>C	uc001odm.2	+	8	826	c.814T>C	c.(814-816)TAC>CAC	p.Y272H	DPF2_uc001odn.2_Missense_Mutation_p.Y286H|DPF2_uc010roe.1_Intron	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	272	PHD-type 1.				apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						GCCCAACAACTACTGTGACTT	0.537000													82	110					0	0	0.003610	0	0
SPTBN2	6712	broad.mit.edu	37	11	66488565	66488565	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:66488565C>G	uc001ojd.2	-	2	219	c.147G>C	c.(145-147)AAG>AAC	p.K49N		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	49	Actin-binding.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CTGCCAGAGCCTTAATGCGAG	0.572000													28	23					0	0	0.002836	0	0
PCF11	51585	broad.mit.edu	37	11	82877707	82877707	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:82877707A>C	uc001ozx.3	+	5	2113	c.1768A>C	c.(1768-1770)AGT>CGT	p.S590R	PCF11_uc010rsu.1_Missense_Mutation_p.S590R	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	590					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						AAACTGGCAAAGTTCCAAGTC	0.373000													41	72					0	0	0.002852	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662534	662534	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr12:662534C>A	uc001qii.1	+	14	1445	c.1445C>A	c.(1444-1446)CCC>CAC	p.P482H	B4GALNT3_uc001qij.1_Missense_Mutation_p.P385H|B4GALNT3_uc001qik.1_Missense_Mutation_p.P31H	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	482	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CTGGCTCAGCCCCGGGAGGGC	0.627000													38	80					1.60099e-16	2.01863e-16	0.004878	1	0
TMTC3	160418	broad.mit.edu	37	12	88548132	88548132	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr12:88548132A>G	uc001tau.2	+	4	696	c.476A>G	c.(475-477)TAT>TGT	p.Y159C	TMTC3_uc009zsm.2_RNA	NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	159						integral to membrane	binding			skin(1)	1						TTTTTGTCATATACCAGATCA	0.318000													21	38					0	0	0.003954	0	0
HECTD1	25831	broad.mit.edu	37	14	31598378	31598378	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr14:31598378C>A	uc001wrc.1	-	25	4688	c.4199G>T	c.(4198-4200)GGT>GTT	p.G1400V	HECTD1_uc001wrb.1_5'UTR|HECTD1_uc001wrd.1_Missense_Mutation_p.G868V	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1400	Ser-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TTTGGTCGAACCCAAGCTGAT	0.468000													73	139					3.1711e-36	4.13311e-36	0.003610	1	0
PCNX	22990	broad.mit.edu	37	14	71413816	71413816	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr14:71413816G>T	uc001xmo.2	+	2	784	c.338G>T	c.(337-339)AGG>ATG	p.R113M	PCNX_uc001xmn.3_Missense_Mutation_p.R113M|PCNX_uc010are.1_Missense_Mutation_p.R113M	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	113						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TGTTCAACCAGGAGAAAAGAC	0.398000													8	15					0.000274275	0.000318159	0.004482	1	0
HERC1	8925	broad.mit.edu	37	15	64005696	64005696	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr15:64005696G>C	uc002amp.2	-	23	4467	c.4319C>G	c.(4318-4320)GCT>GGT	p.A1440G	HERC1_uc010uil.1_Missense_Mutation_p.A424G	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1440					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GTTGCATGCAGCAGTGTACAC	0.537000													30	49					0	0	0.001786	0	0
CILP	8483	broad.mit.edu	37	15	65496681	65496681	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr15:65496681A>T	uc002aon.2	-	6	1025	c.844T>A	c.(844-846)TTT>ATT	p.F282I		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	282					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						ATGGGGGCAAACTTGACCTTT	0.527000													46	65					0	0	0.003610	0	0
SRL	6345	broad.mit.edu	37	16	4245669	4245669	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr16:4245669A>C	uc002cvz.3	-	5	508	c.495T>G	c.(493-495)TTT>TTG	p.F165L	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	624						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						AATTCTGGCCAAACTTCTCAA	0.527000													138	58					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	16	18442416	18442416	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr16:18442416A>G	uc010bvw.2	-	6	958	c.302T>C	c.(301-303)CTC>CCC	p.L101P						SubName: Full=cDNA FLJ59085, highly similar to Polycystin-1;																		GGGGGCCCCGAGTAGCCCTGG	0.692000													4	40					0	0	0.000602	0	0
NLK	51701	broad.mit.edu	37	17	26490600	26490600	+	Silent	SNP	A	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr17:26490600A>G	uc010crj.2	+	5	995	c.783A>G	c.(781-783)TTA>TTG	p.L261L	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	261	Protein kinase.				intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CTGGCATTTTACATCGAGACA	0.318000													12	21					0	0	0.001855	0	0
COX11	1353	broad.mit.edu	37	17	53045784	53045784	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr17:53045784T>G	uc010wng.1	-	1	281	c.224A>C	c.(223-225)AAG>ACG	p.K75T	STXBP4_uc010dcc.1_5'Flank|STXBP4_uc002iuf.1_5'Flank|STXBP4_uc010dcd.1_5'Flank|COX11_uc010wne.1_RNA|COX11_uc010wnf.1_RNA|COX11_uc002iue.2_RNA|COX11_uc010wnh.1_Missense_Mutation_p.K75T	NM_004375	NP_004366	Q9Y6N1	COX11_HUMAN	COX11 homolog, cytochrome c oxidase assembly	75					respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	copper ion binding|cytochrome-c oxidase activity|electron carrier activity			ovary(1)	1						GTTCGAGCTCTTAGGCCGCCG	0.677000													60	58					0	0	0.003610	0	0
DDX5	1655	broad.mit.edu	37	17	62500170	62500170	+	Silent	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr17:62500170T>C	uc002jek.2	-	4	619	c.372A>G	c.(370-372)GGA>GGG	p.G124G	CCDC45_uc002jem.2_5'Flank|CCDC45_uc002jen.2_5'Flank|CCDC45_uc010wqb.1_5'Flank|DDX5_uc010deh.2_Silent_p.G124G|DDX5_uc002jej.2_Silent_p.G19G|DDX5_uc010wqa.1_Intron|DDX5_uc002jel.1_5'Flank	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	124					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CAACTGGCCATCCCTGAGCTT	0.398000			T	ETV4	prostate								88	59					0	0	0.003610	0	0
SLC9A3R1	9368	broad.mit.edu	37	17	72745286	72745286	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr17:72745286A>T	uc002jlo.2	+	1	524	c.301A>T	c.(301-303)AAG>TAG	p.K101*	SLC9A3R1_uc002jln.1_RNA	NM_004252	NP_004243	O14745	NHRF1_HUMAN	sodium/hydrogen exchanger regulatory factor 1	101					apoptosis|bile acid secretion|glutathione transport|microvillus assembly|negative regulation of cell proliferation|negative regulation of ERK1 and ERK2 cascade|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|protein complex assembly|regulation of protein kinase activity|regulation of sodium:hydrogen antiporter activity|renal absorption|Wnt receptor signaling pathway	actin cytoskeleton|apical plasma membrane|centrosome|endomembrane system|filopodium|intracellular membrane-bounded organelle|microvillus membrane|ruffle	beta-2 adrenergic receptor binding|beta-catenin binding|chloride channel regulator activity|growth factor receptor binding|PDZ domain binding|phosphatase binding|protein self-association				0						GCAGCTGCAGAAGCTCGGCGT	0.736000													13	10					0	0	0.001855	0	0
FASN	2194	broad.mit.edu	37	17	80038618	80038618	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr17:80038618C>T	uc002kdu.2	-	39	6893	c.6776G>A	c.(6775-6777)AGC>AAC	p.S2259N	FASN_uc002kdv.1_RNA	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	2259	Thioesterase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GGAGGCCAGGCTGTGGAACAC	0.687000													6	20					0	0	0.001984	0	0
METTL4	64863	broad.mit.edu	37	18	2554953	2554953	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr18:2554953G>C	uc002klh.3	-	4	1324	c.544C>G	c.(544-546)CAG>GAG	p.Q182E	METTL4_uc010dkj.2_5'UTR	NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	182					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						CCCTTGTCCTGTTTTTCAAAA	0.388000													53	33					0	0	0.003610	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21819191	21819191	+	Silent	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr18:21819191C>A	uc002kve.2	-	16	1611	c.1437G>T	c.(1435-1437)GCG>GCT	p.A479A	OSBPL1A_uc002kvd.2_5'UTR|OSBPL1A_uc010xbc.1_Silent_p.A97A|OSBPL1A_uc002kvf.3_Silent_p.A259A	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	479					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					TACCTGACAGCGCATCATAGA	0.522000													4	53					0.000602214	0.000684871	0.000602	1	0
PALM	5064	broad.mit.edu	37	19	746543	746543	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:746543T>G	uc002lpm.1	+	9	1087	c.893T>G	c.(892-894)GTC>GGC	p.V298G	PALM_uc002lpn.1_Missense_Mutation_p.V254G|PALM_uc010xfu.1_Missense_Mutation_p.V163G	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	298					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		GAGCCCCCGGTCACAATGATC	0.667000													14	30					0	0	0.006122	0	0
CELF5	60680	broad.mit.edu	37	19	3293390	3293390	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:3293390G>T	uc002lxm.2	+	12	1441	c.1404G>T	c.(1402-1404)ATG>ATT	p.M468I	CELF5_uc002lxl.1_3'UTR|CELF5_uc010dtj.1_3'UTR|CELF5_uc010xhg.1_3'UTR|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	468	RRM 3.				mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						AGATCGGCATGAAGAGGCTCA	0.642000													5	81					0.00116845	0.00131592	0.001168	1	0
PIAS4	51588	broad.mit.edu	37	19	4013072	4013072	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:4013072A>C	uc002lzg.2	+	2	189	c.179A>C	c.(178-180)GAG>GCG	p.E60A		NM_015897	NP_056981	Q8N2W9	PIAS4_HUMAN	protein inhibitor of activated STAT, 4	60					positive regulation of protein sumoylation|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|PML body	DNA binding|SUMO ligase activity|ubiquitin protein ligase binding|zinc ion binding			pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGATCAAGGAGCTGTACGAG	0.632000													37	40					0	0	0.003755	0	0
FBXW9	84261	broad.mit.edu	37	19	12807385	12807385	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:12807385G>T	uc010dyx.2	-	1	11	c.11C>A	c.(10-12)CCC>CAC	p.P4H	FBXW9_uc010xmp.1_RNA|FBXW9_uc002mum.1_Missense_Mutation_p.P4H|FBXW9_uc002mun.1_5'UTR	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	4							protein binding			ovary(1)	1						CCGCCCTAGGGGAAGCTCCAT	0.662000													25	52					6.32553e-13	7.72381e-13	0.004656	1	0
RYR1	6261	broad.mit.edu	37	19	38976604	38976604	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:38976604C>T	uc002oit.2	+	34	5439	c.5309C>T	c.(5308-5310)TCG>TTG	p.S1770L	RYR1_uc002oiu.2_Missense_Mutation_p.S1770L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1770	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTCACCACTTCGCTGAGGCCC	0.682000													36	38					0	0	0.004878	0	0
PSG3	5671	broad.mit.edu	37	19	43237192	43237192	+	Silent	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:43237192G>T	uc002oue.2	-	3	585	c.453C>A	c.(451-453)ATC>ATA	p.I151I	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.I173I	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	151	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGCTGCTGGAGATGGAGGGCT	0.522000													92	139					7.30829e-53	9.63365e-53	0.003610	1	0
PPP1R15A	23645	broad.mit.edu	37	19	49377875	49377875	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr19:49377875G>A	uc002pky.3	+	2	1654	c.1385G>A	c.(1384-1386)GGA>GAA	p.G462E		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	462	4 X 34 AA approximate repeats.|Glu-rich.|Interaction with SMAD7.				apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		GCAGCCTTGGGAGAAGCTGAG	0.562000													28	66					0	0	0.005443	0	0
BIRC6	57448	broad.mit.edu	37	2	32726845	32726845	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:32726845G>A	uc010ezu.2	+	47	9231	c.9097G>A	c.(9097-9099)GGG>AGG	p.G3033R		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3033					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CATATCAGTTGGGGATGGATT	0.363000													21	82					0	0	0.001882	0	0
HEATR5B	54497	broad.mit.edu	37	2	37280725	37280725	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:37280725C>A	uc002rpp.1	-	17	2521	c.2425G>T	c.(2425-2427)GAA>TAA	p.E809*		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	809							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TTAACACATTCAGCAAAGTGA	0.328000													8	18					5.18039e-06	6.13189e-06	0.003080	1	0
RPL23AP32	56969	broad.mit.edu	37	2	54756736	54756737	+	Missense_Mutation	DNP	TT	CC	CC			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:54756736_54756737TT>CC	uc010yot.1	+	1	378_379	c.254_255TT>CC	c.(253-255)TTT>TCC	p.F85S	SPTBN1_uc002rxu.2_Intron|SPTBN1_uc002rxv.1_Intron	NR_002229				SubName: Full=Putative uncharacterized protein DKFZp547I014;												0						ACCACTGAGTTTGCCATGAAGA	0.480000													3	45					0	0	0.004672	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522786	95522786	+	RNA	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:95522786T>C	uc010fhp.2	-	1		c.35A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CGGCGTCGCCTTTGACAGCTG	0.687000													3	117					0	0	0.000248	0	0
ANKRD36	375248	broad.mit.edu	37	2	97877292	97877292	+	Missense_Mutation	SNP	C	A	A	rs10171441	by1000genomes	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:97877292C>A	uc010yva.1	+	57	3621	c.3377C>A	c.(3376-3378)CCG>CAG	p.P1126Q	ANKRD36_uc002sxr.1_5'Flank	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	1126											0						GTGTCTTCTCCGAAACAACCA	0.299000													3	32					0.004672	0.00521108	0.004672	1	0
RANBP2	5903	broad.mit.edu	37	2	109379713	109379713	+	Silent	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:109379713T>C	uc002tem.3	+	20	2844	c.2718T>C	c.(2716-2718)AAT>AAC	p.N906N		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	906					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						ATGGCATGAATAGGCTTCCAC	0.413000													26	58					0	0	0.004656	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802049	185802049	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:185802049G>T	uc002uph.2	+	4	2520	c.1926G>T	c.(1924-1926)CAG>CAT	p.Q642H		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	642						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAGAAAAGCAGTATTTAGCTG	0.348000													46	76					6.7651e-33	8.71947e-33	0.003610	1	0
SLC40A1	30061	broad.mit.edu	37	2	190428768	190428768	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:190428768G>A	uc002uqp.3	-	7	1295	c.944C>T	c.(943-945)GCT>GTT	p.A315V		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	315	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			ATAAAGGAAAGCAAGACCCAT	0.532000													21	30					0	0	0.001882	0	0
SLC40A1	30061	broad.mit.edu	37	2	190428774	190428774	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr2:190428774C>G	uc002uqp.3	-	7	1289	c.938G>C	c.(937-939)GGT>GCT	p.G313A		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	313	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			GAAAGCAAGACCCATGCCAGC	0.527000													23	35					0	0	0.003330	0	0
NFATC2	4773	broad.mit.edu	37	20	50139902	50139902	+	Missense_Mutation	SNP	C	G	G	rs147035777	by1000genomes	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr20:50139902C>G	uc002xwd.2	-	2	1098	c.878G>C	c.(877-879)GGG>GCG	p.G293A	NFATC2_uc002xwc.2_Missense_Mutation_p.G293A|NFATC2_uc010zyv.1_Missense_Mutation_p.G74A|NFATC2_uc010zyw.1_Missense_Mutation_p.G74A|NFATC2_uc010zyx.1_Missense_Mutation_p.G273A|NFATC2_uc010zyy.1_Missense_Mutation_p.G74A|NFATC2_uc010zyz.1_Missense_Mutation_p.G74A|NFATC2_uc002xwe.2_Missense_Mutation_p.G273A	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	293					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					AGGGGGGTACCCAGCCGGGGA	0.697000													11	19					0	0	0.008291	0	0
PCBP3	54039	broad.mit.edu	37	21	47333926	47333926	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr21:47333926T>G	uc002zhq.1	+	8	787	c.662T>G	c.(661-663)TTT>TGT	p.F221C	PCBP3_uc010gqb.2_Missense_Mutation_p.F221C|PCBP3_uc002zhp.1_Missense_Mutation_p.F221C|PCBP3_uc010gqc.1_Intron|PCBP3_uc002zhs.1_Intron|PCBP3_uc002zhr.1_Missense_Mutation_p.F221C|PCBP3_uc002zht.1_Missense_Mutation_p.F189C	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	221					mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		CCTGTCATTTTTGCAGGTGGT	0.602000													35	52					0	0	0.004289	0	0
VPRBP	9730	broad.mit.edu	37	3	51456171	51456171	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr3:51456171G>T	uc003dbe.1	-	15	3564	c.3396C>A	c.(3394-3396)AAC>AAA	p.N1132K	VPRBP_uc003dbf.1_Missense_Mutation_p.N408K	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	1132	WD repeat-like region.				interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		AGTTGTGACAGTTATAGCTGG	0.502000													134	29					3.17917e-66	4.2389e-66	0.003610	1	0
PBRM1	55193	broad.mit.edu	37	3	52584609	52584609	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr3:52584609A>T	uc003des.2	-	29	4737	c.4725T>A	c.(4723-4725)TAT>TAA	p.Y1575*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.Y1468*|PBRM1_uc003der.2_Nonsense_Mutation_p.Y1488*|PBRM1_uc003det.2_Nonsense_Mutation_p.Y1483*|PBRM1_uc003deu.2_Nonsense_Mutation_p.Y1538*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.Y1520*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.Y1495*|PBRM1_uc003dey.2_Nonsense_Mutation_p.Y1468*	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1575	Pro-rich.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		GTGGGCCGGGATATGGAGGTG	0.572000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								59	19					0	0	0.003610	0	0
COL8A1	1295	broad.mit.edu	37	3	99513269	99513269	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr3:99513269C>T	uc003dtg.1	+	5	769	c.524C>T	c.(523-525)CCT>CTT	p.P175L	COL8A1_uc003dth.1_Missense_Mutation_p.P175L|COL8A1_uc003dti.1_Missense_Mutation_p.P176L	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	175	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						ATGGGCATGCCTGGGGCAAAA	0.552000													36	7					0	0	0.005524	0	0
PDIA5	10954	broad.mit.edu	37	3	122821610	122821610	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr3:122821610T>A	uc003egc.1	+	5	410	c.354T>A	c.(352-354)TTT>TTA	p.F118L	PDIA5_uc003egd.1_RNA	NM_006810	NP_006801	Q14554	PDIA5_HUMAN	protein disulfide isomerase A5 precursor	118					cell redox homeostasis|glycerol ether metabolic process|protein folding|response to stress	endoplasmic reticulum lumen	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0427)		ATGGTGCATTTCATACTGAAT	0.393000													19	3					0	0	0.002299	0	0
CSN3	1448	broad.mit.edu	37	4	71114720	71114720	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr4:71114720T>A	uc003hfe.3	+	4	151	c.93T>A	c.(91-93)CAT>CAA	p.H31Q		NM_005212	NP_005203	P07498	CASK_HUMAN	casein kappa precursor	31						extracellular region	protein binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						tGCAGTGCCATGAGAATGATG	0.284000													5	51					0	0	0.000602	0	0
AFM	173	broad.mit.edu	37	4	74364944	74364944	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr4:74364944T>C	uc003hhb.2	+	11	1434	c.1403T>C	c.(1402-1404)TTT>TCT	p.F468S		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	468	Albumin 3.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGTGAAGAGTTTGCCTGTGTT	0.398000													15	27					0	0	0.003163	0	0
AFF1	4299	broad.mit.edu	37	4	88029422	88029422	+	Silent	SNP	A	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr4:88029422A>T	uc003hqj.3	+	10	1874	c.1467A>T	c.(1465-1467)TCA>TCT	p.S489S	AFF1_uc011ccz.1_Silent_p.S496S|AFF1_uc003hqk.3_Silent_p.S489S|AFF1_uc011cda.1_Silent_p.S127S	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	489	Poly-Ser.					nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AGAGCAGTTCAAGTGACAGCG	0.542000													8	55					0	0	0.003080	0	0
LEF1	51176	broad.mit.edu	37	4	109084775	109084775	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr4:109084775A>C	uc003hyt.1	-	3	1018	c.363T>G	c.(361-363)AAT>AAG	p.N121K	LEF1_uc011cfj.1_Missense_Mutation_p.N6K|LEF1_uc011cfk.1_Missense_Mutation_p.N53K|LEF1_uc003hyu.1_Missense_Mutation_p.N121K|LEF1_uc003hyv.1_Missense_Mutation_p.N121K|LEF1_uc010imb.1_RNA	NM_016269	NP_057353	Q9UJU2	LEF1_HUMAN	lymphoid enhancer-binding factor 1 isoform 1	121	Pro-rich.				canonical Wnt receptor signaling pathway|cell chemotaxis|cellular response to interleukin-4|epithelial to mesenchymal transition|histone H3 acetylation|histone H4 acetylation|negative regulation of apoptosis in bone marrow|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell-cell adhesion|negative regulation of DNA binding|negative regulation of estrogen receptor binding|negative regulation of interleukin-13 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of transcription, DNA-dependent|neutrophil differentiation|osteoblast differentiation|palate development|positive regulation by host of viral transcription|positive regulation of cell cycle process|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cell proliferation in bone marrow|positive regulation of cell-cell adhesion|positive regulation of epithelial to mesenchymal transition|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|T-helper 1 cell differentiation	cytoplasm|protein-DNA complex|transcription factor complex	armadillo repeat domain binding|beta-catenin binding|C2H2 zinc finger domain binding|caspase inhibitor activity|DNA bending activity|enhancer binding|estrogen receptor activity|estrogen receptor binding|gamma-catenin binding|histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding			large_intestine(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000224)		ATGGGTCGTTATTCATATTTG	0.428000													37	55					0	0	0.004289	0	0
DCHS2	54798	broad.mit.edu	37	4	155226303	155226303	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr4:155226303C>A	uc003inw.2	-	16	3976	c.3976G>T	c.(3976-3978)GTA>TTA	p.V1326L		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1326	Cadherin 11.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GTTGTCACTACCTCTCCAGTG	0.338000													13	22					3.27435e-08	3.91572e-08	0.002450	1	0
TRIP13	9319	broad.mit.edu	37	5	916037	916037	+	Silent	SNP	C	T	T	rs147247158		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr5:916037C>T	uc003jbr.2	+	12	1262	c.1152C>T	c.(1150-1152)AGC>AGT	p.S384S		NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	384					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			AGGGCCTCAGCGGCCGGGTCC	0.537000													6	233					0	0	0.001984	0	0
FAM105A	54491	broad.mit.edu	37	5	14609077	14609077	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr5:14609077T>C	uc003jfj.2	+	7	961	c.848T>C	c.(847-849)TTC>TCC	p.F283S		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	283										ovary(1)	1	Lung NSC(4;0.00592)					CCTTTGAGCTTCATGATGAAT	0.433000													67	112					0	0	0.003610	0	0
TXNDC5	81567	broad.mit.edu	37	6	7889004	7889004	+	Silent	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr6:7889004A>C	uc003mxv.2	-	7	929	c.897T>G	c.(895-897)ACT>ACG	p.T299T	TXNDC5_uc003mxw.2_Silent_p.T256T|TXNDC5_uc010jnz.2_Silent_p.T191T|TXNDC5_uc010joa.1_Silent_p.T191T	NM_030810	NP_110437	Q8NBS9	TXND5_HUMAN	thioredoxin domain containing 5 isoform 1	299					anti-apoptosis|cell redox homeostasis|cellular membrane organization|glycerol ether metabolic process|post-Golgi vesicle-mediated transport	endoplasmic reticulum lumen|lysosomal lumen	electron carrier activity|isomerase activity|protein disulfide oxidoreductase activity				0	Ovarian(93;0.0398)					CCGTCGCTCCAGTCTCTGTGC	0.642000													93	137					0	0	0.003610	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039406	55039406	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr6:55039406G>T	uc003pcl.2	+	1	336	c.21G>T	c.(19-21)GAG>GAT	p.E7D	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	7	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCAAATTGGAGGACTCCCCCC	0.567000													4	102					0.000602214	0.000684871	0.000602	1	0
LIN28B	389421	broad.mit.edu	37	6	105405976	105405976	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr6:105405976G>A	uc003pqv.1	+	2	216	c.13G>A	c.(13-15)GGG>AGG	p.G5R	LIN28B_uc010kda.1_5'UTR	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	5					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				CTTCTCAGGCGGGGCTAGCAA	0.517000													4	100					0	0	0.000248	0	0
TBP	6908	broad.mit.edu	37	6	170871070	170871070	+	Silent	SNP	G	A	A	rs142508797	byFrequency	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr6:170871070G>A	uc003qxt.2	+	3	478	c.246G>A	c.(244-246)CAG>CAA	p.Q82Q	TBP_uc003qxu.2_Silent_p.Q82Q|TBP_uc011ehf.1_Silent_p.Q62Q|TBP_uc011ehg.1_Silent_p.Q82Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	82	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.174000													3	39					0	0	0.004672	0	0
CARD11	84433	broad.mit.edu	37	7	2963967	2963967	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr7:2963967A>T	uc003smv.2	-	15	2244	c.1840T>A	c.(1840-1842)TCC>ACC	p.S614T		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	614					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TGGATGGAGGAGGGTCCGAAG	0.612000			Mis		DLBCL								22	42					0	0	0.003330	0	0
PNPLA8	50640	broad.mit.edu	37	7	108112970	108112970	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr7:108112970C>T	uc003vff.1	-	12	2631	c.2224G>A	c.(2224-2226)GAA>AAA	p.E742K	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.E742K|PNPLA8_uc003vfi.1_Missense_Mutation_p.E642K|PNPLA8_uc003vfj.1_Missense_Mutation_p.E742K|PNPLA8_uc003vfk.1_Missense_Mutation_p.E642K	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	742					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						ATTTTTTGTTCATTTCTTTCT	0.299000													21	41					0	0	0.008871	0	0
UNC5D	137970	broad.mit.edu	37	8	35541184	35541184	+	Silent	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr8:35541184C>T	uc003xjr.1	+	5	1018	c.690C>T	c.(688-690)ACC>ACT	p.T230T	UNC5D_uc003xjs.1_Silent_p.T225T|UNC5D_uc003xjt.1_5'UTR	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	230	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GAAATTACACCTGCATGGCAG	0.537000													21	33					0	0	0.008871	0	0
NOV	4856	broad.mit.edu	37	8	120429171	120429171	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr8:120429171G>C	uc003yoq.2	+	2	493	c.272G>C	c.(271-273)CGC>CCC	p.R91P		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	91	IGFBP N-terminal.				regulation of cell growth		growth factor activity|insulin-like growth factor binding			ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TACTGTGATCGCAGCGCGGAC	0.612000											OREG0018940	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	22					0	0	0.008871	0	0
FAM135B	51059	broad.mit.edu	37	8	139151264	139151264	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr8:139151264C>T	uc003yuy.2	-	18	4037	c.3866G>A	c.(3865-3867)CGC>CAC	p.R1289H	FAM135B_uc003yux.2_Missense_Mutation_p.R1190H|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1289										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GAAACATTTGCGCAAATCAGC	0.423000										HNSCC(54;0.14)			4	83					0	0	0.001168	0	0
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	A	A			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:20414346G>A	uc003zoe.2	-	5	757	c.498C>T	c.(496-498)AGC>AGT	p.S166S	MLLT3_uc011lne.1_Silent_p.S134S|MLLT3_uc011lnf.1_Silent_p.S163S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.A128V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	166	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.134000			T	MLL	ALL								4	67					0	0	0.000248	0	0
LOC442421	442421	broad.mit.edu	37	9	66499867	66499867	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:66499867T>C	uc004aee.1	+	1	677	c.677T>C	c.(676-678)CTG>CCG	p.L226P	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TTCACTTTGCTGGTGAGCCAG	0.567000													4	28					0	0	0.001984	0	0
RASEF	158158	broad.mit.edu	37	9	85597649	85597649	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:85597649A>C	uc004amo.1	-	17	2427	c.2166T>G	c.(2164-2166)AAT>AAG	p.N722K		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	722					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						TCCCGGTTAGATTGGTAATGG	0.313000													68	147					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	9	90747533	90747533	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:90747533G>T	uc011lti.1	-	4	448	c.419C>A	c.(418-420)GCC>GAC	p.A140D						SubName: Full=cDNA FLJ59639;																		GGACCGGGAGGCTCCATCAGG	0.597000													17	138					7.45023e-12	9.00236e-12	0.001523	1	0
PAPPA	5069	broad.mit.edu	37	9	118969850	118969850	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:118969850C>T	uc004bjn.2	+	3	1975	c.1594C>T	c.(1594-1596)CCA>TCA	p.P532S	PAPPA_uc011lxp.1_Missense_Mutation_p.P325S|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	532	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGCAACTTGGCCATGGGACAA	0.433000													21	40					0	0	0.001523	0	0
ASTN2	23245	broad.mit.edu	37	9	119495750	119495750	+	Missense_Mutation	SNP	T	A	A	rs150944935		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:119495750T>A	uc004bjs.1	-	14	2550	c.2449A>T	c.(2449-2451)ATC>TTC	p.I817F	ASTN2_uc004bjr.1_Missense_Mutation_p.I813F|ASTN2_uc004bjt.1_Missense_Mutation_p.I766F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	817	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGCAGCGGGATCACCAACAGC	0.602000													15	131					0	0	0.002450	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070113	141070113	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr9:141070113T>C	uc004com.2	+	3	272	c.11T>C	c.(10-12)GTG>GCG	p.V4A	TUBBP5_uc010ncq.2_Missense_Mutation_p.V118A					RecName: Full=Putative tubulin beta-4q chain;												0						ATGGACTCTGTGCGCTCGGGG	0.701000													16	70					0	0	0.006122	0	0
FAM123B	139285	broad.mit.edu	37	X	63412033	63412033	+	Silent	SNP	A	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chrX:63412033A>G	uc004dvo.2	-	2	1407	c.1134T>C	c.(1132-1134)GAT>GAC	p.D378D		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	378	Glu-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						cctcctcGTCATCATCATCTG	0.353000													5	70					0	0	0.001984	0	0
TRMT112	51504	broad.mit.edu	37	11	64084953	64084953	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr11:64084953delC	uc001nzt.2	-	1	81	c.46delG	c.(46-48)GTGfs	p.V16fs	PRDX5_uc001nzu.2_5'Flank|PRDX5_uc001nzv.2_5'Flank|PRDX5_uc001nzw.2_5'Flank|PRDX5_uc001nzx.2_5'Flank	NM_016404	NP_057488	Q9UI30	TR112_HUMAN	tRNA methyltransferase 11-2 homolog	16	TRM112.				peptidyl-glutamine methylation	protein complex	protein binding|protein methyltransferase activity				0						CGGGACCCCACCCCCCGCACA	0.657													11	24	---	---	---	---					
FOXO1	2308	broad.mit.edu	37	13	41134463	41134467	+	Frame_Shift_Del	DEL	CAGTT	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr13:41134463_41134467delCAGTT	uc001uxl.3	-	2	1546_1550	c.1161_1165delAACTG	c.(1159-1167)TTAACTGTTfs	p.L387fs	FOXO1_uc010acc.1_Frame_Shift_Del_p.L202fs	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	387_389					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		TGGGTCGAAACAGTTAATGATGTTG	0.473													7	128	---	---	---	---					
NID2	22795	broad.mit.edu	37	14	52474565	52474565	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr14:52474565delA	uc001wzo.2	-	19	4077	c.3843delT	c.(3841-3843)TTTfs	p.F1281fs	NID2_uc010tqs.1_Frame_Shift_Del_p.F1233fs|NID2_uc010tqt.1_Frame_Shift_Del_p.F1281fs	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1281	LDL-receptor class B 3.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					agaaagggtcaaaggttaagc	0.313													21	41	---	---	---	---					
RBL2	5934	broad.mit.edu	37	16	53468508	53468508	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr16:53468508delC	uc002ehi.3	+	1	158	c.40delC	c.(40-42)CCCfs	p.P14fs	RBL2_uc010vgv.1_5'Flank	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	14	Poly-Pro.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GCCCCCGCCTCCCCCTCCGGC	0.746													4	8	---	---	---	---					
PPP1R9B	84687	broad.mit.edu	37	17	48226606	48226607	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr17:48226606_48226607insG	uc002iqh.3	-	3	1275_1276	c.1272_1273insC	c.(1270-1275)CCCTACfs	p.P424fs		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	422_423	Interacts with protein phosphatase 1 (By similarity).				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						TCGGGCTCGTAGGGGGGCTCCC	0.678													16	42	---	---	---	---					
LRBA	987	broad.mit.edu	37	4	151827549	151827549	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr4:151827549delA	uc010ipj.2	-	12	1976	c.1502delT	c.(1501-1503)TTGfs	p.L501fs	LRBA_uc003ilu.3_Frame_Shift_Del_p.L501fs|LRBA_uc010ipk.1_Frame_Shift_Del_p.L420fs	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	501						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AAAGGCCAGCAAGGTTGAACT	0.333													36	85	---	---	---	---					
HOXA5	3202	broad.mit.edu	37	7	27182960	27182966	+	Frame_Shift_Del	DEL	CGGCTGG	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr7:27182960_27182966delCGGCTGG	uc003syn.1	-	1	322_328	c.261_267delCCAGCCG	c.(259-267)AGCCAGCCGfs	p.S87fs		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	87_89					negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGACGTGGCCGGCTGGCTGTACCTGG	0.744													9	24	---	---	---	---					
CDH17	1015	broad.mit.edu	37	8	95158391	95158391	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chr8:95158391delC	uc003ygh.2	-	15	2057	c.1932delG	c.(1930-1932)GGGfs	p.G644fs	CDH17_uc011lgo.1_Frame_Shift_Del_p.G430fs|CDH17_uc011lgp.1_Frame_Shift_Del_p.G644fs	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	644	Cadherin 6.|Extracellular (Potential).					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TCAAGGAAGACCCCCCTAAGG	0.438													24	53	---	---	---	---					
GPRASP1	9737	broad.mit.edu	37	X	101912417	101912418	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	g.chrX:101912417_101912418delTC	uc004ejj.3	+	5	4377_4378	c.3576_3577delTC	c.(3574-3579)ATTCGAfs	p.I1192fs	GPRASP1_uc004eji.3_Frame_Shift_Del_p.I1192fs|GPRASP1_uc010nod.2_Frame_Shift_Del_p.I1192fs	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	1192_1193	OPRD1-binding.					cytoplasm	protein binding			ovary(1)|lung(1)	2						GAGATTTCATTCGAGATTCAGG	0.371													51	16	---	---	---	---					
