Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PEX10	5192	broad.mit.edu	37	1	2340282	2340282	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:2340282C>G	uc001ajh.2	-	3	278	c.209G>C	c.(208-210)GGG>GCG	p.G70A	PEX10_uc001ajg.2_Missense_Mutation_p.G70A	NM_002617	NP_002608	O60683	PEX10_HUMAN	peroxisome biogenesis factor 10 isoform 2	70					protein import into peroxisome matrix|protein import into peroxisome matrix	integral to peroxisomal membrane|peroxisomal membrane	protein binding|protein C-terminus binding|zinc ion binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(77;0.000247)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;5.35e-20)|all_lung(118;2.78e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00102)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0169)|Lung(427;0.199)		GTACTCCTCCCCCAGGGTCTG	0.677													11	31					0	0	0.00010058	0	0
PER3	8863	broad.mit.edu	37	1	7887456	7887456	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:7887456G>A	uc001aoo.2	+	17	2618	c.2443G>A	c.(2443-2445)GCA>ACA	p.A815T	PER3_uc009vmg.1_Missense_Mutation_p.A823T|PER3_uc009vmh.1_Missense_Mutation_p.A816T|PER3_uc001aop.2_Missense_Mutation_p.A823T|PER3_uc010nzw.1_Missense_Mutation_p.A504T	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	815	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		AAGAGAATACGCAGCCCCCGG	0.622													23	65					0	0	0.000375601	0	0
CELA2A	63036	broad.mit.edu	37	1	15793929	15793929	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:15793929C>T	uc001awk.2	+	7	714	c.688C>T	c.(688-690)CAG>TAG	p.Q230*		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	230	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CGGCCGGTGGCAGGTGCACGG	0.607													8	48					0	0	0.000157383	0	0
CLCNKB	1188	broad.mit.edu	37	1	16378296	16378296	+	Silent	SNP	A	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:16378296A>C	uc001axw.3	+	14	1469	c.1389A>C	c.(1387-1389)CCA>CCC	p.P463P	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.P463P|CLCNKB_uc001axy.3_Silent_p.P294P	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	463	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CCATCATGCCAGGGGGGTATG	0.622													4	82					0	0	0.000602214	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110034064	110034064	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:110034064C>A	uc001dxr.2	+	10	1894	c.1879C>A	c.(1879-1881)CTG>ATG	p.L627M	ATXN7L2_uc001dxs.2_Missense_Mutation_p.L254M|ATXN7L2_uc001dxt.2_Missense_Mutation_p.L130M|CYB561D1_uc010ovl.1_5'Flank|CYB561D1_uc010ovm.1_5'Flank|CYB561D1_uc001dxu.2_5'Flank|CYB561D1_uc001dxw.2_5'Flank|CYB561D1_uc010ovn.1_5'Flank|CYB561D1_uc010ovo.1_5'Flank|CYB561D1_uc009wfd.2_5'Flank|CYB561D1_uc010ovp.1_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	627										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		GGCAGGGCCCCTGGACTGTCG	0.622													16	25					1.67942e-08	5.79398e-07	0.00074312	1	0
FLG	2312	broad.mit.edu	37	1	152276076	152276077	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:152276076_152276077CG>AT	uc001ezu.1	-	3	11321_11322	c.11285_11286CG>AT	c.(11284-11286)CCG>CAT	p.P3762H		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3762	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTTGACCCCGGGTGTCCACG	0.599									Ichthyosis				9	477					0	0	6.4e-05	0	0
INSRR	3645	broad.mit.edu	37	1	156811976	156811976	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:156811976T>G	uc010pht.1	-	19	3579	c.3325A>C	c.(3325-3327)AAC>CAC	p.N1109H	NTRK1_uc001fqf.1_Missense_Mutation_p.L38W|NTRK1_uc009wsi.1_5'UTR	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1109	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					ACAAACTTGTTGGCAGCAAGG	0.572													9	23					0	0	0.000673444	0	0
C1orf21	81563	broad.mit.edu	37	1	184476745	184476745	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:184476745G>T	uc001gqv.1	+	3	595	c.118G>T	c.(118-120)GAA>TAA	p.E40*		NM_030806	NP_110433	Q9H246	CA021_HUMAN	chromosome 1 open reading frame 21	40											0		Breast(1374;0.00262)		Colorectal(1306;4.8e-08)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)		CAAACCAGTGGAAGAGGTCAA	0.348													13	52					2.23348e-06	7.45149e-05	0.000422831	1	0
PLEKHA6	22874	broad.mit.edu	37	1	204198070	204198070	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:204198070T>C	uc001hau.2	-	19	3063	c.2746A>G	c.(2746-2748)AAG>GAG	p.K916E		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	916										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			CTCACCTCCTTATTGATGTCC	0.587													38	107					0	0	0.000589545	0	0
USH2A	7399	broad.mit.edu	37	1	216019211	216019211	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:216019211G>T	uc001hku.1	-	45	9397	c.9010C>A	c.(9010-9012)CAC>AAC	p.H3004N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3004	Fibronectin type-III 16.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGATGCTGTGGACTCCATTG	0.433										HNSCC(13;0.011)			12	45					0.00010058	0.00328345	0.00010058	1	0
TP53BP2	7159	broad.mit.edu	37	1	223984099	223984099	+	Silent	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:223984099A>G	uc010pvb.1	-	13	2434	c.2142T>C	c.(2140-2142)AAT>AAC	p.N714N	TP53BP2_uc001hod.2_Silent_p.N585N|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Silent_p.N353N	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	708					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		TTCGGTAAGGATTAGATAAGA	0.438													43	143					0	0	0.000781405	0	0
ATG2A	23130	broad.mit.edu	37	11	64679328	64679328	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr11:64679328T>A	uc001obx.2	-	9	1329	c.1214A>T	c.(1213-1215)CAG>CTG	p.Q405L		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	405							protein binding			ovary(1)|central_nervous_system(1)	2						TGGGTGGGCCTGGGCAGAGAG	0.647													10	25					0	0	0.000442599	0	0
BBS1	582	broad.mit.edu	37	11	66282135	66282135	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr11:66282135A>G	uc001oij.1	+	4	430	c.418A>G	c.(418-420)AAC>GAC	p.N140D	BBS1_uc001oii.1_Missense_Mutation_p.N177D|BBS1_uc010rpf.1_RNA|BBS1_uc010rpg.1_Missense_Mutation_p.N140D|BBS1_uc001oik.1_Missense_Mutation_p.N64D|BBS1_uc001oil.1_Missense_Mutation_p.N140D	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	140					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						AGACCTTTGGAACCAGGCCAA	0.502									Bardet-Biedl_syndrome				22	80					0	0	0.000295444	0	0
TMEM133	83935	broad.mit.edu	37	11	100863392	100863392	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr11:100863392T>A	uc001pgf.2	+	1	582	c.353T>A	c.(352-354)CTT>CAT	p.L118H		NM_032021	NP_114410	Q9H2Q1	TM133_HUMAN	transmembrane protein 133	118	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(157;0.000869)|all_hematologic(158;0.014)		BRCA - Breast invasive adenocarcinoma(274;0.0675)		CCAGTTCCACTTGGTAATAAC	0.388													24	92					0	0	0.000586117	0	0
GRIK4	2900	broad.mit.edu	37	11	120745883	120745883	+	Silent	SNP	C	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr11:120745883C>T	uc001pxn.2	+	11	1382	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	GRIK4_uc009zav.1_Silent_p.F365F|GRIK4_uc009zaw.1_Silent_p.F365F|GRIK4_uc009zax.1_Silent_p.F365F	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	365	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	ACATTGAATTCAACAGCAAAG	0.502													20	95					0	0	0.000295444	0	0
CACNA1C	775	broad.mit.edu	37	12	2716231	2716231	+	Silent	SNP	C	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:2716231C>T	uc009zdu.1	+	27	3664	c.3351C>T	c.(3349-3351)GAC>GAT	p.D1117D	CACNA1C_uc009zdv.1_Silent_p.D1094D|CACNA1C_uc001qkb.2_Silent_p.D1097D|CACNA1C_uc001qkc.2_Silent_p.D1097D|CACNA1C_uc001qke.2_Silent_p.D1097D|CACNA1C_uc001qkf.2_Silent_p.D1097D|CACNA1C_uc001qjz.2_Silent_p.D1097D|CACNA1C_uc001qkd.2_Silent_p.D1097D|CACNA1C_uc001qkg.2_Silent_p.D1097D|CACNA1C_uc009zdw.1_Silent_p.D1097D|CACNA1C_uc001qkh.2_Silent_p.D1097D|CACNA1C_uc001qkl.2_Silent_p.D1117D|CACNA1C_uc001qkn.2_Silent_p.D1097D|CACNA1C_uc001qko.2_Silent_p.D1117D|CACNA1C_uc001qkp.2_Silent_p.D1097D|CACNA1C_uc001qkr.2_Silent_p.D1097D|CACNA1C_uc001qku.2_Silent_p.D1097D|CACNA1C_uc001qkq.2_Silent_p.D1097D|CACNA1C_uc001qks.2_Silent_p.D1097D|CACNA1C_uc001qkt.2_Silent_p.D1097D|CACNA1C_uc001qka.1_Silent_p.D632D|CACNA1C_uc001qki.1_Silent_p.D833D|CACNA1C_uc001qkj.1_Silent_p.D833D|CACNA1C_uc001qkk.1_Silent_p.D833D|CACNA1C_uc001qkm.1_Silent_p.D833D	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1117	Extracellular (Potential).|III.|Dihydropyridine binding (By similarity).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GCAAGTTTGACTTTGACAATG	0.567													10	28					0	0	0.000978159	0	0
SLC2A14	144195	broad.mit.edu	37	12	7982586	7982586	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:7982586T>A	uc001qtk.2	-	10	1151	c.358A>T	c.(358-360)ATT>TTT	p.I120F	SLC2A14_uc001qtl.2_Missense_Mutation_p.I97F|SLC2A14_uc001qtm.2_Missense_Mutation_p.I97F|SLC2A14_uc010sgg.1_Missense_Mutation_p.I11F|SLC2A14_uc001qtn.2_Missense_Mutation_p.I120F|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Missense_Mutation_p.I135F	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	120	Helical; Name=3; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		AGGTTGACAATCAGCATTGAA	0.458													12	54					0	0	0.000151284	0	0
DDX12	440081	broad.mit.edu	37	12	9574020	9574020	+	Silent	SNP	T	C	C	rs149364690	by1000genomes	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:9574020T>C	uc010sgs.1	-	20	2211	c.2016A>G	c.(2014-2016)CTA>CTG	p.L672L	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						ACGTGAATTCTAGCGGCTGGT	0.597													3	122					0	0	0.00024832	0	0
SLC38A1	81539	broad.mit.edu	37	12	46633478	46633478	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:46633478T>A	uc001rpa.2	-	3	364	c.106A>T	c.(106-108)AAT>TAT	p.N36Y	SLC38A1_uc001rpb.2_Missense_Mutation_p.N36Y|SLC38A1_uc001rpc.2_Missense_Mutation_p.N36Y|SLC38A1_uc001rpd.2_Missense_Mutation_p.N36Y|SLC38A1_uc001rpe.2_Missense_Mutation_p.N36Y|SLC38A1_uc010slh.1_Intron|SLC38A1_uc009zkj.1_Missense_Mutation_p.N36Y	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	36	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			ATCTGACCATTTTCTACTTCG	0.308													27	107					0	0	0.000184323	0	0
DAO	1610	broad.mit.edu	37	12	109281276	109281277	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:109281276_109281277CC>AA	uc001tnr.3	+	3	398_399	c.245_246CC>AA	c.(244-246)CCC>CAA	p.P82Q	DAO_uc001tnq.3_Missense_Mutation_p.P82Q|DAO_uc009zvb.2_Intron|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	82					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						GTCCATTCTCCCAACGCTGAAA	0.535													10	521					0	0	6.4e-05	0	0
TCTN1	79600	broad.mit.edu	37	12	111070319	111070319	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:111070319C>T	uc009zvs.2	+	5	775	c.667C>T	c.(667-669)CCT>TCT	p.P223S	TCTN1_uc009zvr.1_RNA|TCTN1_uc001trl.2_RNA|TCTN1_uc001trm.2_Missense_Mutation_p.P163S|TCTN1_uc010syc.1_RNA|TCTN1_uc001tro.2_RNA|TCTN1_uc001trp.3_Missense_Mutation_p.P223S|TCTN1_uc001trn.3_Missense_Mutation_p.P223S|TCTN1_uc001trj.1_Missense_Mutation_p.P167S|TCTN1_uc001trk.3_RNA|HVCN1_uc001trq.1_Intron	NM_001082537	NP_001076006	Q2MV58	TECT1_HUMAN	tectonic family member 1 isoform 2	223					multicellular organismal development	extracellular region					0						TCTGAGATTTCCTTCGTCCCT	0.358													38	150					0	0	0.000374591	0	0
ATXN2	6311	broad.mit.edu	37	12	111908459	111908459	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:111908459G>C	uc001tsj.2	-	19	3248	c.3086C>G	c.(3085-3087)GCC>GGC	p.A1029G	ATXN2_uc001tsh.2_Missense_Mutation_p.A764G|ATXN2_uc001tsi.2_Missense_Mutation_p.A740G|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsg.2_Missense_Mutation_p.A217G|ATXN2_uc001tsl.1_Missense_Mutation_p.A48G	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	1029	Pro-rich.				cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						TGGTGGGGTGGCTGCAATCGG	0.532													57	102					0	0	0.000781405	0	0
SBNO1	55206	broad.mit.edu	37	12	123806180	123806180	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:123806180T>C	uc010tap.1	-	16	2225	c.2225A>G	c.(2224-2226)AAT>AGT	p.N742S	SBNO1_uc010tao.1_Missense_Mutation_p.N741S|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.N742S|SBNO1_uc001ueu.2_Missense_Mutation_p.N741S|SBNO1_uc001uev.2_Missense_Mutation_p.N740S|SBNO1_uc009zxy.1_Missense_Mutation_p.N707S	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	742							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		ACTTTCTTCATTATCAGAGGC	0.403													81	107					0	0	0.000781405	0	0
MTHFD1	4522	broad.mit.edu	37	14	64915025	64915025	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr14:64915025A>C	uc001xhb.2	+	23	2656	c.2269A>C	c.(2269-2271)AAT>CAT	p.N757H	MTHFD1_uc010aqf.2_Missense_Mutation_p.N813H	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	757	Formyltetrahydrofolate synthetase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	AGTGGCCGTGAATGCATTCAA	0.383													10	40					0	0	0.000978159	0	0
STON2	85439	broad.mit.edu	37	14	81744521	81744521	+	Silent	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr14:81744521G>A	uc010tvu.1	-	4	1335	c.1134C>T	c.(1132-1134)CAC>CAT	p.H378H	STON2_uc001xvk.1_Silent_p.H378H|STON2_uc010tvt.1_Silent_p.H175H	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	378					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CAGCATCAGAGTGTGACTGGG	0.448													26	91					0	0	0.000878237	0	0
ATG2B	55102	broad.mit.edu	37	14	96784101	96784101	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr14:96784101C>G	uc001yfi.2	-	19	3336	c.2971G>C	c.(2971-2973)GCC>CCC	p.A991P		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	991										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		AGCTGACTGGCTACTGAAAGC	0.343													30	128					0	0	0.000184323	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406162	105406163	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr14:105406162_105406163CC>AA	uc010axc.1	-	7	15745_15746	c.15625_15626GG>TT	c.(15625-15627)GGG>TTG	p.G5209L	AHNAK2_uc001ypx.2_Missense_Mutation_p.G5109L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5209						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTTTCCAGCCCCGCCTCTGTCC	0.559													9	303					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	15	25427348	25427348	+	RNA	SNP	T	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr15:25427348T>G	uc001yyy.1	+	3		c.178T>G			uc001yza.1_5'Flank|SNORD115-7_uc001yyw.1_RNA|SNORD115-7_uc001yyz.2_5'Flank					Homo sapiens clone Rt-7 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.																		CCCCAGATGTTGAGCCCAGAG	0.612													4	11					0	0	0.00024832	0	0
SCAPER	49855	broad.mit.edu	37	15	77087751	77087751	+	Silent	SNP	A	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr15:77087751A>T	uc002bby.2	-	7	701	c.642T>A	c.(640-642)CGT>CGA	p.R214R	SCAPER_uc002bbx.2_5'UTR|SCAPER_uc002bbz.1_Silent_p.R79R|SCAPER_uc002bca.1_Silent_p.R79R|SCAPER_uc002bcb.1_Silent_p.R214R|SCAPER_uc002bcc.1_Silent_p.R214R	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	213						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						TGGGAGCCAGACGAGGAGCTG	0.418													19	59					0	0	0.00074312	0	0
TMED3	23423	broad.mit.edu	37	15	79606106	79606106	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr15:79606106C>G	uc002beu.2	+	2	277	c.176C>G	c.(175-177)ACT>AGT	p.T59S	TMED3_uc010unj.1_Missense_Mutation_p.T59S|TMED3_uc002bev.2_RNA	NM_007364	NP_031390	Q9Y3Q3	TMED3_HUMAN	transmembrane emp24 domain containing 3	59	Lumenal (Potential).|GOLD.				protein transport	ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane				ovary(1)|skin(1)	2						CAGGTCATCACTGGAGGCCAC	0.358													8	39					0	0	0.000157383	0	0
SRRM2	23524	broad.mit.edu	37	16	2808492	2808492	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr16:2808492T>A	uc002crk.2	+	5	1086	c.537T>A	c.(535-537)AGT>AGA	p.S179R	SRRM2_uc002crj.1_Missense_Mutation_p.S83R|SRRM2_uc002crl.1_Missense_Mutation_p.S179R|SRRM2_uc010bsu.1_Missense_Mutation_p.S83R	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	179	Ser-rich.			SS -> NN (in Ref. 2; AAF21439).		Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AGTCTAGCAGTTCTCGCTCAC	0.383													40	169					0	0	0.000270559	0	0
SRCAP	10847	broad.mit.edu	37	16	30750805	30750805	+	Missense_Mutation	SNP	T	A	A	rs142948420	byFrequency	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr16:30750805T>A	uc002dze.1	+	34	9829	c.9444T>A	c.(9442-9444)AGT>AGA	p.S3148R	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S2943R	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	3148					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TTGGTGGGAGTCCTGGGCTGG	0.647													4	26					0	0	3.59834e-05	0	0
ELMO3	79767	broad.mit.edu	37	16	67233265	67233265	+	Silent	SNP	C	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr16:67233265C>A	uc002esa.2	+	1	238	c.195C>A	c.(193-195)ATC>ATA	p.I65I	ELMO3_uc002esb.2_Silent_p.I65I|ELMO3_uc002esc.2_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	12					apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		AGATTGCCATCAAGATGCGTG	0.682													14	61					3.27435e-08	1.11696e-06	0.000219431	1	0
WSCD1	23302	broad.mit.edu	37	17	6012935	6012935	+	Silent	SNP	C	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr17:6012935C>G	uc010cli.2	+	6	1237	c.858C>G	c.(856-858)CCC>CCG	p.P286P	WSCD1_uc002gcn.2_Silent_p.P286P|WSCD1_uc002gco.2_Silent_p.P286P|WSCD1_uc010clj.2_5'UTR	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	286	WSC 2.					integral to membrane	sulfotransferase activity				0						AGGAGTTCCCCTTGGCCATTC	0.557													75	230					0	0	0.000781405	0	0
FAM27L	284123	broad.mit.edu	37	17	21825491	21825491	+	RNA	SNP	G	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr17:21825491G>T	uc002gyz.2	+	1		c.122G>T				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		cctgaaatgggccgactagga	0													17	68					2.39187e-15	8.64491e-14	0.000132079	1	0
ZNF830	91603	broad.mit.edu	37	17	33289281	33289281	+	Silent	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr17:33289281T>C	uc002hih.3	+	1	733	c.696T>C	c.(694-696)CAT>CAC	p.H232H	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	232					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				CAGAAATACATGAAAAAGTGG	0.448													16	41					0	0	0.000308642	0	0
NAGS	162417	broad.mit.edu	37	17	42083544	42083544	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr17:42083544T>C	uc002ies.2	+	3	854	c.854T>C	c.(853-855)CTG>CCG	p.L285P	PYY_uc002ieq.2_5'Flank|NAGS_uc010czn.2_Missense_Mutation_p.L285P|NAGS_uc002iet.2_5'UTR	NM_153006	NP_694551	Q8N159	NAGS_HUMAN	N-acetylglutamate synthase	285					arginine biosynthetic process|urea cycle	mitochondrial matrix	acetyl-CoA:L-glutamate N-acetyltransferase activity				0		Breast(137;0.00536)|Prostate(33;0.0724)		BRCA - Breast invasive adenocarcinoma(366;0.113)	L-Glutamic Acid(DB00142)	GCCAAGGCGCTGCGGCCCACC	0.662													9	32					0	0	0.00010058	0	0
DCXR	51181	broad.mit.edu	37	17	79994491	79994491	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr17:79994491C>A	uc002kdg.2	-	5	392	c.377G>T	c.(376-378)GGA>GTA	p.G126V		NM_016286	NP_057370	Q7Z4W1	DCXR_HUMAN	dicarbonyl/L-xylulose reductase	126					D-xylose metabolic process|glucose metabolic process|protein homotetramerization|xylulose metabolic process	membrane	binding|L-xylulose reductase (NADP+) activity				0	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CCCTGGGACTCCCCGGGCTAT	0.582													16	63					6.31663e-08	2.13081e-06	0.000308642	1	0
TMEM146	257062	broad.mit.edu	37	19	5744442	5744442	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:5744442A>G	uc002mda.2	+	8	639	c.578A>G	c.(577-579)GAA>GGA	p.E193G	TMEM146_uc010duj.1_Intron	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	193	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCATAGGCAGAAATCATTGGG	0.368													15	83					0	0	0.000219431	0	0
QTRT1	81890	broad.mit.edu	37	19	10823458	10823458	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:10823458A>G	uc002mpr.2	+	8	911	c.886A>G	c.(886-888)ACT>GCT	p.T296A	DNM2_uc010dxk.2_5'Flank	NM_031209	NP_112486	Q9BXR0	TGT_HUMAN	queuine tRNA-ribosyltransferase 1	296					queuosine biosynthetic process	mitochondrion|nucleus|ribosome	metal ion binding|queuine tRNA-ribosyltransferase activity			skin(1)	1			Epithelial(33;1.55e-05)|all cancers(31;3.42e-05)			CCTGGTGCCCACTGGGAACCT	0.622													31	125					0	0	0.000228196	0	0
CEACAM5	1048	broad.mit.edu	37	19	42219580	42219580	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:42219580G>A	uc002ork.2	+	4	836	c.715G>A	c.(715-717)GCC>ACC	p.A239T	CEACAM5_uc010ehz.1_3'UTR|CEACAM5_uc002orj.1_Missense_Mutation_p.A239T|CEACAM5_uc002orl.2_Missense_Mutation_p.A239T	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	239	Ig-like 3.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TGGCCCGGATGCCCCCACCAT	0.507													23	61					0	0	0.00106085	0	0
PSG3	5671	broad.mit.edu	37	19	43242965	43242966	+	Missense_Mutation	DNP	CG	AT	AT	rs149473391	byFrequency	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:43242965_43242966CG>AT	uc002oue.2	-	2	472_473	c.340_341CG>AT	c.(340-342)CGG>ATG	p.R114M	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.R136M	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	114	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATTC	0.46													15	503					0	0	6.4e-05	0	0
RASIP1	54922	broad.mit.edu	37	19	49230414	49230414	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:49230414G>T	uc002pki.2	-	7	2070	c.1873C>A	c.(1873-1875)CAC>AAC	p.H625N	RASIP1_uc002pkh.2_5'Flank	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	625	Dilute.				signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		CCCTCAGGGTGGCTTGAAAAA	0.498													15	22					3.35478e-16	1.22712e-14	0.000308642	1	0
GPR32	2854	broad.mit.edu	37	19	51273914	51273914	+	Silent	SNP	G	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:51273914G>C	uc010ycf.1	+	1	57	c.57G>C	c.(55-57)CTG>CTC	p.L19L		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	19	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CTGGGGTCCTGACACGTGATC	0.512													8	27					0	0	0.000157383	0	0
ZNF416	55659	broad.mit.edu	37	19	58084258	58084258	+	Silent	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr19:58084258A>G	uc002qpf.2	-	4	1185	c.1014T>C	c.(1012-1014)AGT>AGC	p.S338S	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	338	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		TAAGGTTGGAACTTTGGCTAA	0.428													14	47					0	0	0.000219431	0	0
SMEK2	57223	broad.mit.edu	37	2	55844410	55844410	+	Silent	SNP	C	T	T	rs142775723		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr2:55844410C>T	uc002rzc.2	-	1	387	c.12G>A	c.(10-12)ACG>ACA	p.T4T	SMEK2_uc002rzb.2_Silent_p.T4T|SMEK2_uc002rzd.2_Silent_p.T4T|SMEK2_uc002rze.2_RNA	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	4	WH1.					microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CTCGCCGCCGCGTATCCGACA	0.567													4	20					0	0	0.00024832	0	0
DUSP11	8446	broad.mit.edu	37	2	74007101	74007101	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr2:74007101T>C	uc002sjp.2	-	1	184	c.142A>G	c.(142-144)ATG>GTG	p.M48V	DUSP11_uc002sjq.3_Missense_Mutation_p.M48V	NM_003584	NP_003575	O75319	DUS11_HUMAN	dual specificity phosphatase 11	1					RNA processing	nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity|RNA binding			skin(1)	1						CACTGGCTCATGTGGGTCCCA	0.607											OREG0014714	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	43					0	0	0.000295444	0	0
PLGLA	285189	broad.mit.edu	37	2	107002796	107002796	+	RNA	SNP	C	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr2:107002796C>A	uc002tdp.2	+	1		c.28C>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						TTCAGTGTCACTAAGAAGCAG	0.483													5	264					1.23904e-05	0.000408883	0.000602214	1	0
ARHGEF4	50649	broad.mit.edu	37	2	131801882	131801882	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr2:131801882G>A	uc002tsa.1	+	12	2130	c.1610G>A	c.(1609-1611)CGC>CAC	p.R537H	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.R537H|ARHGEF4_uc010fmx.1_Missense_Mutation_p.R477H|ARHGEF4_uc002tsc.1_Missense_Mutation_p.R80H	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	537	PH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		GACCTGCTCCGCCGCGACGTG	0.642													8	10					0	0	0.000442599	0	0
CSE1L	1434	broad.mit.edu	37	20	47691344	47691344	+	Silent	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr20:47691344A>G	uc002xty.2	+	11	1223	c.1089A>G	c.(1087-1089)GAA>GAG	p.E363E	CSE1L_uc010zyg.1_Silent_p.E146E|CSE1L_uc010ghx.2_Silent_p.E307E|CSE1L_uc010ghy.2_Silent_p.E12E|CSE1L_uc010zyh.1_Silent_p.E12E	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	363					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			AAGCATTTGAAGATAATTCTG	0.383													8	36					0	0	0.000978159	0	0
C21orf99	149992	broad.mit.edu	37	21	14439357	14439357	+	RNA	SNP	C	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr21:14439357C>G	uc002yja.3	+	10		c.2875C>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TGAATCAGCTCAATCAATCGC	0.274													2	5					0	0	0.000602214	0	0
BRWD1	54014	broad.mit.edu	37	21	40582820	40582820	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr21:40582820G>T	uc002yxk.1	-	35	4075	c.3936C>A	c.(3934-3936)AAC>AAA	p.N1312K	BRWD1_uc010goc.1_5'UTR|BRWD1_uc002yxl.2_Missense_Mutation_p.N1312K|BRWD1_uc010god.1_Intron	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1312					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				TTTCAACATAGTTCGTAGCTC	0.348													10	49					9.05144e-12	3.23296e-10	0.000151284	1	0
TXN2	25828	broad.mit.edu	37	22	36876727	36876727	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr22:36876727T>C	uc003apk.1	-	2	235	c.158A>G	c.(157-159)TAC>TGC	p.Y53C	TXN2_uc003apl.1_RNA	NM_012473	NP_036605	Q99757	THIOM_HUMAN	thioredoxin 2 precursor	53					cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	mitochondrion|nucleolus	electron carrier activity				0						CCTCGTGGTGTATATTGTCCG	0.542													19	81					0	0	0.000229342	0	0
CNTN6	27255	broad.mit.edu	37	3	1371578	1371578	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr3:1371578C>G	uc003boz.2	+	11	1590	c.1323C>G	c.(1321-1323)ATC>ATG	p.I441M	CNTN6_uc011asj.1_Missense_Mutation_p.I369M|CNTN6_uc003bpa.2_Missense_Mutation_p.I441M	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	441	Ig-like C2-type 5.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GGGCAGCTATCTCTTGGAAAA	0.333													12	32					0	0	0.00010058	0	0
CHDH	55349	broad.mit.edu	37	3	53857341	53857341	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr3:53857341A>G	uc003dgz.2	-	3	1135	c.695T>C	c.(694-696)ATC>ACC	p.I232T		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	232					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	ACCTTCATGGATGGTCATGTC	0.612													4	11					0	0	0.000602214	0	0
VGLL3	389136	broad.mit.edu	37	3	87017993	87017993	+	Silent	SNP	C	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr3:87017993C>T	uc003dqn.2	-	3	1048	c.684G>A	c.(682-684)CGG>CGA	p.R228R		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	228	His-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GGTGGTGGTGCCGCATGTACA	0.493													17	51					0	0	0.000132079	0	0
PARP14	54625	broad.mit.edu	37	3	122414352	122414352	+	Silent	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr3:122414352G>A	uc003efq.3	+	5	737	c.678G>A	c.(676-678)GTG>GTA	p.V226V	PARP14_uc010hrk.2_RNA	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		TTCTGGAAGTGACAAACACAA	0.373													5	18					0	0	0.000602214	0	0
EPHB1	2047	broad.mit.edu	37	3	134873005	134873005	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr3:134873005G>A	uc003eqt.2	+	6	1529	c.1309G>A	c.(1309-1311)GTT>ATT	p.V437I	EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	437	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CCCCTCCACCGTTCCCATCAT	0.532													17	286					0	0	0.000566183	0	0
TLR1	7096	broad.mit.edu	37	4	38798114	38798114	+	Missense_Mutation	SNP	A	T	T	rs151285692		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr4:38798114A>T	uc003gtl.2	-	4	2613	c.2339T>A	c.(2338-2340)CTG>CAG	p.L780Q		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	780	Cytoplasmic (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TTGCTCTGTCAGCTTAATATT	0.388													5	51					0	0	8.12818e-05	0	0
SLC30A9	10463	broad.mit.edu	37	4	42072612	42072612	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr4:42072612T>A	uc003gwl.2	+	15	1468	c.1322T>A	c.(1321-1323)CTC>CAC	p.L441H	SLC30A9_uc011byx.1_Missense_Mutation_p.L201H	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	441	Helical; (Potential).				nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						TCAGCATTCCTCATCTACACT	0.458													32	79					0	0	0.000692331	0	0
TXK	7294	broad.mit.edu	37	4	48076056	48076056	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr4:48076056T>A	uc003gxx.3	-	13	1339	c.1253A>T	c.(1252-1254)GAT>GTT	p.D418V	TXK_uc010igj.2_Intron|TXK_uc011bzj.1_Missense_Mutation_p.D105V	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	418	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GACATACTCATCATCCAAAAC	0.368													14	63					0	0	0.000422831	0	0
WDFY3	23001	broad.mit.edu	37	4	85781624	85781624	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr4:85781624G>A	uc003hpd.2	-	4	529	c.121C>T	c.(121-123)CAC>TAC	p.H41Y	WDFY3_uc003hpf.2_Missense_Mutation_p.H41Y	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	41						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TGAGTCATGTGCCGGGGAGGA	0.577													22	100					0	0	0.00047179	0	0
CENPE	1062	broad.mit.edu	37	4	104117130	104117130	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr4:104117130G>A	uc003hxb.1	-	4	394	c.304C>T	c.(304-306)CAT>TAT	p.H102Y	CENPE_uc003hxc.1_Missense_Mutation_p.H102Y	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	102	Kinesin-motor.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		ACTCCCAAATGATCTTCTGAA	0.348													7	36					0	0	0.000157383	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128983499	128983499	+	Silent	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr5:128983499T>C	uc003kvb.1	+	12	1896	c.1896T>C	c.(1894-1896)CCT>CCC	p.P632P	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	632	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		CCTCAGCACCTGAACATCTGG	0.502													5	182					0	0	0.000157383	0	0
RAD50	10111	broad.mit.edu	37	5	131976367	131976367	+	Silent	SNP	T	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr5:131976367T>C	uc003kxi.2	+	24	4009	c.3622T>C	c.(3622-3624)TTA>CTA	p.L1208L	RAD50_uc003kxh.2_Silent_p.L1069L	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	1208	Ala/Asp-rich (DA-box).				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTTCCAGGTATTAGCCTCACT	0.498								Homologous_recombination					25	111					0	0	0.000586117	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140802438	140802438	+	Silent	SNP	G	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr5:140802438G>C	uc003lkq.1	+	1	1902	c.1644G>C	c.(1642-1644)TCG>TCC	p.S548S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.S548S|PCDHGA11_uc003lkp.1_Silent_p.S548S	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	548	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAACGTGTCGCTGAGCCTGT	0.607													42	209					0	0	0.000781405	0	0
TRIM38	10475	broad.mit.edu	37	6	25967011	25967011	+	Silent	SNP	G	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr6:25967011G>C	uc003nfm.2	+	3	696	c.261G>C	c.(259-261)ACG>ACC	p.T87T	TRIM38_uc003nfn.2_Silent_p.T87T	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	87					positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						TCAAAGAGACGGATCAAGAAA	0.562													17	34					0	0	0.000422831	0	0
ITPR3	3710	broad.mit.edu	37	6	33644599	33644599	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr6:33644599G>A	uc011drk.1	+	26	3556	c.3337G>A	c.(3337-3339)GAG>AAG	p.E1113K		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1113	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GATCAAGTCGGAGCTGGACCG	0.622													14	43					0	0	0.000566183	0	0
CPNE5	57699	broad.mit.edu	37	6	36712081	36712081	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr6:36712081T>A	uc003omr.1	-	19	1520	c.1453A>T	c.(1453-1455)ATC>TTC	p.I485F	CPNE5_uc003omp.1_Missense_Mutation_p.I193F|CPNE5_uc010jwn.1_Missense_Mutation_p.I135F|CPNE5_uc003omq.1_Missense_Mutation_p.I135F	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	485	VWFA.									skin(1)	1						ACGATAATGATGGACATGGGG	0.607													3	4					0	0	3.59834e-05	0	0
DOPEY1	23033	broad.mit.edu	37	6	83839062	83839062	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr6:83839062C>A	uc003pjs.1	+	16	2436	c.2176C>A	c.(2176-2178)CAA>AAA	p.Q726K	DOPEY1_uc011dyy.1_Missense_Mutation_p.Q717K|DOPEY1_uc010kbl.1_Missense_Mutation_p.Q717K	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	726					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		CAGAAATTCACAAGGAGATGT	0.398													15	57					2.61681e-11	9.23796e-10	0.000219431	1	0
GLCCI1	113263	broad.mit.edu	37	7	8126022	8126023	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr7:8126022_8126023CG>AT	uc003srk.2	+	8	2057_2058	c.1498_1499CG>AT	c.(1498-1500)CGG>ATG	p.R500M		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	500											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		GCTCTCATCCCGGGTTTCCTTT	0.574													9	503					0	0	6.4e-05	0	0
OGDH	4967	broad.mit.edu	37	7	44685022	44685022	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr7:44685022G>T	uc003tln.2	+	3	428	c.319G>T	c.(319-321)GTG>TTG	p.V107L	OGDH_uc003tlm.2_Missense_Mutation_p.V107L|OGDH_uc011kbx.1_Missense_Mutation_p.V107L|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Missense_Mutation_p.V107L|OGDH_uc011kbz.1_5'UTR|OGDH_uc003tlo.1_5'UTR	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	107					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CCTGGCTGCTGTGGCCCATGC	0.597													31	113					2.81731e-10	9.83145e-09	0.000339439	1	0
MET	4233	broad.mit.edu	37	7	116423407	116423407	+	Missense_Mutation	SNP	G	C	C	rs121913671		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr7:116423407G>C	uc003vij.2	+	19	3869	c.3682G>C	c.(3682-3684)GAC>CAC	p.D1228H	MET_uc010lkh.2_Missense_Mutation_p.D1246H|MET_uc011knj.1_Missense_Mutation_p.D798H	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1228	Protein kinase.|Interaction with RANBP9.|Cytoplasmic (Potential).		D -> N (in RCCP; germline mutation).|D -> H (in RCCP; somatic mutation).		axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.D1246H(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TCTTGCCAGAGACATGTATGA	0.378			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				21	57					0	0	0.000586117	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163187	163187	+	RNA	SNP	T	C	C	rs143599805	by1000genomes	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr8:163187T>C	uc010lra.2	-	4		c.946A>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TGAAAAACATTATTCTTTTAT	0.209													4	31					0	0	0.000602214	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													5	55					0	0	0.000157383	0	0
HR	55806	broad.mit.edu	37	8	21984840	21984840	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr8:21984840G>A	uc003xas.2	-	3	1780	c.1115C>T	c.(1114-1116)CCC>CTC	p.P372L	HR_uc003xat.2_Missense_Mutation_p.P372L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	372							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GTGGCTGGGGGGACAGGCCCT	0.657													7	247					0	0	0.000157383	0	0
ADAM32	203102	broad.mit.edu	37	8	39044454	39044454	+	Silent	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr8:39044454A>G	uc003xmt.3	+	11	1187	c.942A>G	c.(940-942)GCA>GCG	p.A314A	ADAM32_uc011lch.1_Intron|ADAM32_uc003xmu.3_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	314	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			CTCTGGAGGCATTTGCAGTTA	0.348													28	79					0	0	0.000279167	0	0
OSGIN2	734	broad.mit.edu	37	8	90936955	90936955	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr8:90936955G>C	uc003yeg.2	+	6	1059	c.713G>C	c.(712-714)AGG>ACG	p.R238T	OSGIN2_uc003yeh.2_Missense_Mutation_p.R282T	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	238					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			TGGGAAATTAGGGGTTATCAG	0.418													29	57					0	0	0.00106085	0	0
SLC2A8	29988	broad.mit.edu	37	9	130160364	130160364	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr9:130160364T>A	uc004bqu.2	+	3	445	c.400T>A	c.(400-402)TGC>AGC	p.C134S	SLC2A8_uc010mxj.2_Missense_Mutation_p.C134S	NM_014580	NP_055395	Q9NY64	GTR8_HUMAN	solute carrier family 2 (facilitated glucose	134	Helical; Name=4; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	D-glucose transmembrane transporter activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						CGGCCTGGCCTGCGGTGTTGC	0.697													6	12					0	0	0.000157383	0	0
THOC2	57187	broad.mit.edu	37	X	122770007	122770007	+	Silent	SNP	A	G	G			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chrX:122770007A>G	uc004etu.2	-	19	1973	c.1941T>C	c.(1939-1941)GGT>GGC	p.G647G	THOC2_uc011muh.1_Silent_p.G572G	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	647					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GAAAAACTGCACCACAGAAAC	0.323													26	33					0	0	0.000184323	0	0
THRAP3	9967	broad.mit.edu	37	1	36767245	36767245	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr1:36767245delG	uc001cae.3	+	11	2818	c.2594delG	c.(2593-2595)CGGfs	p.R865fs	THRAP3_uc001caf.3_Frame_Shift_Del_p.R865fs	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	865					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AAAAGAAACCGGGAAGAGGAG	0.478			T	USP6	aneurysmal bone cysts								21	57	---	---	---	---					
DNAJC1	64215	broad.mit.edu	37	10	22171214	22171214	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr10:22171214delT	uc001irc.2	-	8	1262	c.975delA	c.(973-975)AAAfs	p.K325fs	DNAJC1_uc001ird.2_Frame_Shift_Del_p.K211fs	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 1	325	Cytoplasmic (By similarity).|SANT 1.				negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			lung(1)	1		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				TATTTACCTGTTTTTTCTGTG	0.294													16	63	---	---	---	---					
PTCHD3	374308	broad.mit.edu	37	10	27687672	27687673	+	In_Frame_Ins	INS	-	GTATAT	GTATAT			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr10:27687672_27687673insGTATAT	uc001itu.2	-	4	1972_1973	c.1854_1855insATATAC	c.(1852-1857)insATATAC	p.618_619insIY		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	618_619	Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TGGAAACACCCATATATACTGC	0.361													13	96	---	---	---	---					
PHLDB1	23187	broad.mit.edu	37	11	118516164	118516164	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr11:118516164delA	uc001ptr.1	+	17	3565	c.3212delA	c.(3211-3213)CACfs	p.H1071fs	PHLDB1_uc001pts.2_Frame_Shift_Del_p.H1071fs|PHLDB1_uc001ptt.2_Frame_Shift_Del_p.H1024fs|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Frame_Shift_Del_p.H886fs|PHLDB1_uc001ptw.1_Frame_Shift_Del_p.H426fs|PHLDB1_uc009zai.1_Frame_Shift_Del_p.H107fs|PHLDB1_uc001ptx.1_Frame_Shift_Del_p.H107fs|PHLDB1_uc010ryi.1_Frame_Shift_Del_p.H214fs	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	1071											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GATGCCCTTCACGGGGCAGCA	0.652													27	66	---	---	---	---					
H2AFJ	55766	broad.mit.edu	37	12	14927683	14927684	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr12:14927683_14927684insT	uc009zia.2	+	1	414_415	c.279_280insT	c.(277-282)GAGTTAfs	p.E93fs	H2AFJ_uc001rch.3_RNA	NM_177925	NP_808760	Q9BTM1	H2AJ_HUMAN	H2A histone family, member J	93_94					nucleosome assembly	nucleosome|nucleus	DNA binding	p.E93D(1)		ovary(1)	1						ACGACGAGGAGTTAAACAAGCT	0.614													58	102	---	---	---	---					
TMEM121	80757	broad.mit.edu	37	14	105996050	105996052	+	In_Frame_Del	DEL	GCC	-	-	rs10569304		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr14:105996050_105996052delGCC	uc001yrp.1	+	2	1030_1032	c.879_881delGCC	c.(877-882)GTGCCG>GTG	p.P299del	ADAM6_uc010tyt.1_Intron|uc001yrr.2_5'Flank	NM_025268	NP_079544	Q9BTD3	TM121_HUMAN	hole protein	299	Pro-rich.					integral to membrane					0		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0188)	Epithelial(152;0.0959)|all cancers(159;0.235)		GCAACTCGGTgccgccgccgccg	0.660													4	6	---	---	---	---					
OGG1	4968	broad.mit.edu	37	3	9800959	9800960	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr3:9800959_9800960insT	uc003bsl.2	+	7	1380_1381	c.1037_1038insT	c.(1036-1038)TCTfs	p.S346fs	OGG1_uc003bsk.2_3'UTR|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bst.2_Intron|CAMK1_uc003bsu.2_Intron|CAMK1_uc003bss.2_Intron|uc003bsv.1_5'Flank	NM_016828	NP_058437	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 2d	Error:Variant_position_missing_in_O15527_after_alignment					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					ACTTCTTCCTCTAGACTTGGAG	0.267								BER_DNA_glycosylases					32	125	---	---	---	---					
NR3C2	4306	broad.mit.edu	37	4	149357285	149357285	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr4:149357285delT	uc003ilj.3	-	2	1062	c.728delA	c.(727-729)AATfs	p.N243fs	NR3C2_uc003ilk.3_Frame_Shift_Del_p.N243fs|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	243	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GGAGCCTCGATTTTCAACATT	0.527													46	103	---	---	---	---					
MAML1	9794	broad.mit.edu	37	5	179193559	179193560	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr5:179193559_179193560insC	uc003mkm.2	+	2	1811_1812	c.1548_1549insC	c.(1546-1551)AAACCCfs	p.K516fs	MAML1_uc003mkn.1_Frame_Shift_Ins_p.K516fs	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	516_517					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCAATACAAAACCCCTTTCTCA	0.559													19	62	---	---	---	---					
TBC1D9B	23061	broad.mit.edu	37	5	179318454	179318455	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr5:179318454_179318455insA	uc003mlh.2	-	6	1005_1006	c.968_969insT	c.(967-969)ATGfs	p.M323fs	TBC1D9B_uc003mli.2_Frame_Shift_Ins_p.M323fs|TBC1D9B_uc003mlj.2_Frame_Shift_Ins_p.M323fs	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	323	GRAM 2.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGAGATGAACATCTGGCCAGG	0.599													41	133	---	---	---	---					
KLHL7	55975	broad.mit.edu	37	7	23163475	23163476	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr7:23163475_23163476insT	uc003svs.3	+	2	493_494	c.200_201insT	c.(199-201)CATfs	p.H67fs	KLHL7_uc003svr.3_Frame_Shift_Ins_p.H45fs|KLHL7_uc011jys.1_Intron|KLHL7_uc011jyt.1_Intron|KLHL7_uc003svt.2_Frame_Shift_Ins_p.H19fs|KLHL7_uc003svp.2_Frame_Shift_Ins_p.H45fs|KLHL7_uc003svq.2_Frame_Shift_Ins_p.H67fs|KLHL7_uc011jyu.1_Frame_Shift_Ins_p.H45fs	NM_001031710	NP_001026880	Q8IXQ5	KLHL7_HUMAN	kelch-like 7 isoform 1	67	BTB.					Golgi apparatus|nucleolus|plasma membrane					0						GCAGCCAGTCATTTTTTTAACT	0.332													30	64	---	---	---	---					
MCPH1	79648	broad.mit.edu	37	8	6335132	6335133	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr8:6335132_6335133insA	uc003wqi.2	+	10	2021_2022	c.1953_1954insA	c.(1951-1956)GTCATGfs	p.V651fs		NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	651_652	BRCT 2.					microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		GAACATTAGTCATGACAAGCAT	0.317													77	204	---	---	---	---					
GSN	2934	broad.mit.edu	37	9	124089637	124089638	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	g.chr9:124089637_124089638insC	uc004blf.1	+	13	1853_1854	c.1792_1793insC	c.(1792-1794)ACCfs	p.T598fs	GSN_uc004bld.1_Frame_Shift_Ins_p.T547fs|GSN_uc010mvq.1_Frame_Shift_Ins_p.T558fs|GSN_uc010mvr.1_Frame_Shift_Ins_p.T558fs|GSN_uc010mvu.1_Frame_Shift_Ins_p.T547fs|GSN_uc010mvt.1_Frame_Shift_Ins_p.T547fs|GSN_uc010mvs.1_Frame_Shift_Ins_p.T547fs|GSN_uc004ble.1_Frame_Shift_Ins_p.T547fs|GSN_uc010mvv.1_Frame_Shift_Ins_p.T547fs|GSN_uc011lyh.1_Frame_Shift_Ins_p.T564fs|GSN_uc011lyi.1_Frame_Shift_Ins_p.T547fs|GSN_uc011lyj.1_Frame_Shift_Ins_p.T571fs|GSN_uc004blg.1_Frame_Shift_Ins_p.T329fs	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	598	Actin-binding, Ca-sensitive (Potential).|Gelsolin-like 5.				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						TGTTCTGAAAACCCCCTCAGCC	0.594													16	69	---	---	---	---					
