Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PIK3CD	5293	broad.mit.edu	37	1	9787005	9787005	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:9787005G>A	uc001aqb.3	+	24	3244	c.3036G>A	c.(3034-3036)CTG>CTA	p.L1012L	PIK3CD_uc010oaf.1_Silent_p.L1011L|PIK3CD_uc001aqe.3_Silent_p.L1036L	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	1012	PI3K/PI4K.				phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		AGGAGGCACTGAAGCACTTCC	0.557000													13	31					0	0	0	0
C8A	731	broad.mit.edu	37	1	57349161	57349161	+	Missense_Mutation	SNP	C	T	T	rs139740733		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:57349161C>T	uc001cyo.2	+	6	794	c.662C>T	c.(661-663)GCA>GTA	p.A221V		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	221	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CAGGCCCTGGCAGATACTGGA	0.338000													11	104					0	0	0	0
ROR1	4919	broad.mit.edu	37	1	64515514	64515514	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:64515514C>T	uc001dbj.2	+	3	714	c.315C>T	c.(313-315)CTC>CTT	p.L105L	ROR1_uc001dbi.3_Silent_p.L105L	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	105	Ig-like C2-type.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CCCGGAGGCTCTCCTTTCGGT	0.572000													55	181					0	0	0	0
GIPC2	54810	broad.mit.edu	37	1	78591604	78591604	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:78591604G>A	uc001dik.2	+	5	944	c.754G>A	c.(754-756)GAT>AAT	p.D252N		NM_017655	NP_060125	Q8TF65	GIPC2_HUMAN	PDZ domain protein GIPC2	252						cytoplasm				ovary(1)	1						AAAGATTGATGATGTTCTTGA	0.294000													14	50					0	0	0	0
MTF2	22823	broad.mit.edu	37	1	93602313	93602313	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:93602313C>A	uc009wdj.2	+	15	1803	c.1511C>A	c.(1510-1512)CCA>CAA	p.P504Q	MTF2_uc010oth.1_Missense_Mutation_p.P402Q|MTF2_uc009wdk.2_Missense_Mutation_p.P447Q|MTF2_uc001dpi.3_Missense_Mutation_p.P231Q|MTF2_uc010oti.1_Missense_Mutation_p.P402Q|MTF2_uc001dpj.3_Missense_Mutation_p.P402Q|MTF2_uc001dpl.3_Missense_Mutation_p.P402Q|MTF2_uc001dpm.3_Missense_Mutation_p.P173Q	NM_007358	NP_031384	Q9Y483	MTF2_HUMAN	metal response element binding transcription	504						nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_lung(203;0.00196)|Lung NSC(277;0.00902)|Melanoma(281;0.099)|Ovarian(761;0.109)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00076)|GBM - Glioblastoma multiforme(16;0.00157)|Epithelial(280;0.0886)		GGTCGTCTTCCAAGAAGAGCA	0.408000													43	111					5.59293e-11	5.99242e-11	1	0
CAPZA1	829	broad.mit.edu	37	1	113189888	113189888	+	Silent	SNP	A	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:113189888A>C	uc001ecj.1	+	2	488	c.96A>C	c.(94-96)GTA>GTC	p.V32V		NM_006135	NP_006126	P52907	CAZA1_HUMAN	F-actin capping protein alpha-1 subunit	32					actin cytoskeleton organization|actin filament capping|blood coagulation|cellular component movement|innate immune response|protein complex assembly	cytosol|extracellular region|F-actin capping protein complex|WASH complex	actin binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTAATGAAGTATTCAATGGTG	0.338000													56	87					0	0	0	0
LOC645166	645166	broad.mit.edu	37	1	148932860	148932860	+	RNA	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:148932860G>C	uc010pbc.1	+	2		c.175G>C			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CCAGTACCAAGAGTTGGTGGG	0.622000													17	268					0	0	0	0
CFHR5	81494	broad.mit.edu	37	1	196967390	196967390	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:196967390C>G	uc001gts.3	+	7	1231	c.1103C>G	c.(1102-1104)TCA>TGA	p.S368*		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	368	Sushi 6.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TACAGGCACTCAGTCTGTATA	0.323000													14	49					0	0	0	0
NAV1	89796	broad.mit.edu	37	1	201778369	201778369	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:201778369C>T	uc001gwu.2	+	20	4623	c.4276C>T	c.(4276-4278)CCG>TCG	p.P1426S	NAV1_uc001gwx.2_Missense_Mutation_p.P1035S	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1429					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GAGGATGCCCCCGCAGCACAT	0.507000													13	240					0	0	0	0
AGT	183	broad.mit.edu	37	1	230846411	230846411	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:230846411G>C	uc001hty.3	-	2	694	c.186C>G	c.(184-186)CCC>CCG	p.P62P	AGT_uc009xfe.2_Silent_p.P62P|AGT_uc009xff.2_Intron	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	62					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	TGGGGTCTTTGGGCTTCCCGG	0.567000													8	103					0	0	0	0
OR2W5	441932	broad.mit.edu	37	1	247654496	247654496	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:247654496C>A	uc001icz.1	+	1	67	c.67C>A	c.(67-69)CTG>ATG	p.L23M		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	23					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TCGGCCTGGACTGGAGAAAAT	0.488000													22	81					7.41877e-09	7.89231e-09	1	0
PARD3	56288	broad.mit.edu	37	10	34671476	34671476	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr10:34671476A>C	uc010qej.1	-	9	1391	c.1391T>G	c.(1390-1392)CTT>CGT	p.L464R	PARD3_uc010qek.1_Missense_Mutation_p.L464R|PARD3_uc010qel.1_Missense_Mutation_p.L464R|PARD3_uc010qem.1_Missense_Mutation_p.L464R|PARD3_uc010qen.1_Missense_Mutation_p.L464R|PARD3_uc010qeo.1_Missense_Mutation_p.L464R|PARD3_uc010qep.1_Missense_Mutation_p.L420R|PARD3_uc010qeq.1_Missense_Mutation_p.L420R|PARD3_uc001ixo.1_Missense_Mutation_p.L194R|PARD3_uc001ixp.1_Missense_Mutation_p.L329R|PARD3_uc001ixq.1_Missense_Mutation_p.L464R|PARD3_uc001ixr.1_Missense_Mutation_p.L464R|PARD3_uc001ixt.1_Missense_Mutation_p.L285R|PARD3_uc001ixu.1_Missense_Mutation_p.L420R|PARD3_uc001ixs.1_Missense_Mutation_p.L117R	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	464	PDZ 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				ACCTTTCTTAAGCTGGATATT	0.393000													47	142					0	0	0	0
MYPN	84665	broad.mit.edu	37	10	69908207	69908207	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr10:69908207G>T	uc001jnm.3	+	6	1413	c.1228G>T	c.(1228-1230)GTG>TTG	p.V410L	MYPN_uc001jnl.1_Missense_Mutation_p.V410L|MYPN_uc001jnn.3_Missense_Mutation_p.V135L|MYPN_uc001jno.3_Missense_Mutation_p.V410L|MYPN_uc001jnp.1_Missense_Mutation_p.V410L|MYPN_uc009xps.2_Missense_Mutation_p.V410L|MYPN_uc009xpt.2_Missense_Mutation_p.V410L|MYPN_uc010qit.1_Missense_Mutation_p.V116L|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	410	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CCAACCTCGTGTGGCAACCAT	0.527000													23	67					2.32416e-17	2.56341e-17	1	0
CDH23	64072	broad.mit.edu	37	10	73553321	73553321	+	Silent	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr10:73553321C>A	uc001jrx.3	+	46	7013	c.6636C>A	c.(6634-6636)GTC>GTA	p.V2212V	CDH23_uc001jsg.3_5'Flank|CDH23_uc001jsh.3_5'Flank	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2212	Cadherin 21.|Extracellular (Potential).			EFLNPIQTVSVLESAEPGTVIANITAIDHDLNPKLEYHIVG IVAKDDTDRLVPNQEDAFAVNIN -> ASWEGQSHVTQAYE EAVGPPQPQVPDSTGDRHPLWGLGGFGQEHPWEGQILGGSS QAEPGLVWS (in Ref. 6; BAB61902).	calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACCACATTGTCGGCATTGTGG	0.537000													18	43					3.52763e-06	3.70031e-06	1	0
PPP1R3C	5507	broad.mit.edu	37	10	93390209	93390209	+	Silent	SNP	G	A	A	rs35287022	byFrequency	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr10:93390209G>A	uc001kho.2	-	2	561	c.429C>T	c.(427-429)ACC>ACT	p.T143T		NM_005398	NP_005389	Q9UQK1	PPR3C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	143	Interaction with EPM2A.						protein serine/threonine phosphatase activity			breast(1)	1		Colorectal(252;0.235)				TTAAGTAATCGGTTGAAGGCT	0.433000													48	125					0	0	0	0
DDB2	1643	broad.mit.edu	37	11	47256422	47256422	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:47256422C>T	uc001neb.2	+	6	1012	c.817C>T	c.(817-819)CGC>TGC	p.R273C	DDB2_uc001nec.2_Intron|DDB2_uc009yli.1_Missense_Mutation_p.R209C|DDB2_uc001ned.2_Intron|DDB2_uc001nee.2_Intron|DDB2_uc001nef.2_Intron|DDB2_uc001neg.2_Missense_Mutation_p.R132C|DDB2_uc001neh.2_RNA	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	273	DWD box.|WD 3.		R -> H (in XP-E; impairs interaction with DDB1 and CUL4A).	R->A: Impairs interaction with DDB1.	nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						TTGGGACCTGCGCCAGGTTAG	0.537000			Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				14	35					0	0	0	0
OR5D18	219438	broad.mit.edu	37	11	55587681	55587681	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:55587681T>A	uc010rin.1	+	1	576	c.576T>A	c.(574-576)GAT>GAA	p.D192E		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CTTGCTCTGATACTTACATCA	0.398000													48	192					0	0	0	0
SPTBN2	6712	broad.mit.edu	37	11	66463950	66463950	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:66463950C>G	uc001ojd.2	-	20	4148	c.4076G>C	c.(4075-4077)AGA>ACA	p.R1359T		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1359	Spectrin 10.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GTGCAGGTCTCTCAGCTTCTC	0.587000													75	236					0	0	0	0
PITPNM1	9600	broad.mit.edu	37	11	67261028	67261028	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:67261028G>A	uc001olx.2	-	21	3384	c.3195C>T	c.(3193-3195)GTC>GTT	p.V1065V	PITPNM1_uc001olw.2_Silent_p.V347V|PITPNM1_uc001oly.2_Silent_p.V1065V|PITPNM1_uc001olz.2_Silent_p.V1064V	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	1065					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GCCGGCCTGTGACATACACGA	0.687000													10	7					0	0	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68696781	68696781	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:68696781G>A	uc001ook.1	+	8	1293	c.1191G>A	c.(1189-1191)CTG>CTA	p.L397L	IGHMBP2_uc001ooj.1_RNA|IGHMBP2_uc001ool.1_5'Flank|IGHMBP2_uc001oom.1_5'Flank	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	397	Leu-rich.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AGTGCATCCTGGCGGGCGATC	0.632000													167	390					0	0	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748063	68748063	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:68748063G>C	uc010rqf.1	-	1	393	c.393C>G	c.(391-393)ATC>ATG	p.I131M		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	131	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			ACTTGAACCAGATAGGGAAGA	0.577000													16	142					0	0	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709328	128709328	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:128709328C>T	uc001qeo.1	-	2	919	c.868G>A	c.(868-870)GAC>AAC	p.D290N	KCNJ1_uc001qep.1_Missense_Mutation_p.D271N|KCNJ1_uc001qeq.1_Missense_Mutation_p.D271N|KCNJ1_uc001qer.1_Missense_Mutation_p.D271N|KCNJ1_uc001qes.1_Missense_Mutation_p.D271N	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	290	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	AATTCAAAGTCCTGCTGGAGA	0.478000													37	72					0	0	0	0
ACAD8	27034	broad.mit.edu	37	11	134131693	134131693	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:134131693G>A	uc001qhk.2	+	9	1062	c.1001G>A	c.(1000-1002)CGC>CAC	p.R334H	ACAD8_uc010scp.1_RNA|ACAD8_uc010scq.1_Missense_Mutation_p.R257H|ACAD8_uc001qhl.2_Missense_Mutation_p.R207H	NM_014384	NP_055199	Q9UKU7	ACAD8_HUMAN	acyl-Coenzyme A dehydrogenase family, member 8	334			R -> C (in IBDD).		branched chain family amino acid catabolic process|lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding				0	all_hematologic(175;0.127)	all_cancers(12;8e-23)|all_epithelial(12;2.59e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|all_neural(223;0.0189)|Medulloblastoma(222;0.0245)|Esophageal squamous(93;0.0559)		Epithelial(10;1.92e-10)|all cancers(11;2.26e-09)|BRCA - Breast invasive adenocarcinoma(10;8.73e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00154)|Lung(977;0.21)		CTGATGGTCCGCAATGCAGCA	0.557000													3	33					0	0	0	0
B4GALNT3	283358	broad.mit.edu	37	12	663005	663005	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:663005G>A	uc001qii.1	+	14	1916	c.1916G>A	c.(1915-1917)AGT>AAT	p.S639N	B4GALNT3_uc001qij.1_Missense_Mutation_p.S542N|B4GALNT3_uc001qik.1_Missense_Mutation_p.S188N	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	639	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CAGACCTTCAGTGCCCGGAAT	0.443000													11	181					0	0	0	0
PDE3A	5139	broad.mit.edu	37	12	20833104	20833104	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:20833104C>T	uc001reh.1	+	16	3347	c.3325C>T	c.(3325-3327)CAG>TAG	p.Q1109*		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1109					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CCAGACCCCTCAGTCGCACTC	0.488000													39	119					0	0	0	0
SCN8A	6334	broad.mit.edu	37	12	52056740	52056740	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:52056740G>A	uc001ryw.2	+	2	317	c.139G>A	c.(139-141)GAC>AAC	p.D47N		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	47					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TCATCGGGAGGACGATGAGGA	0.552000													43	111					0	0	0	0
ANKRD52	283373	broad.mit.edu	37	12	56638175	56638175	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:56638175C>T	uc001skm.3	-	25	2857	c.2767G>A	c.(2767-2769)GAG>AAG	p.E923K		NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	923							protein binding			ovary(2)	2						TTCTTGTTCTCATCCAACACA	0.507000													17	47					0	0	0	0
HMGA2	8091	broad.mit.edu	37	12	66221845	66221845	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:66221845G>T	uc001ssx.2	+	2	987	c.176G>T	c.(175-177)AGT>ATT	p.S59I	RPSAP52_uc001sso.2_5'Flank|HMGA2_uc001ssw.1_Missense_Mutation_p.S59I|HMGA2_uc001ssp.1_RNA|HMGA2_uc010ssv.1_RNA|HMGA2_uc001sss.1_RNA|HMGA2_uc001sst.1_Missense_Mutation_p.S59I|HMGA2_uc001ssu.1_Missense_Mutation_p.S59I|HMGA2_uc001ssv.2_Missense_Mutation_p.S59I	NM_003483	NP_003474	P52926	HMGA2_HUMAN	high mobility group AT-hook 2 isoform a	59	Interaction with E4F1.				cell division|chromatin organization|mitosis|multicellular organismal development|regulation of growth|transcription, DNA-dependent	chromatin	AT DNA binding		HMGA2/LPP(161)|HMGA2/WIF1_ENST00000286574(14)|HMGA2/RAD51B(11)|HMGA2/NFIB_ENST00000397581(8)|HMGA2/FHIT_ENST00000476844(4)|HMGA2/CCNB1IP1(2)|HMGA2/ALDH2_ENST00000261733(2)|HMGA2/EBF1(2)|HMGA2/LHFP(2)|HMGA2/COX6C(2)	soft_tissue(159)|bone(27)|salivary_gland(22)	208	all_cancers(1;5.78e-46)		GBM - Glioblastoma multiforme(1;0.00179)|LUSC - Lung squamous cell carcinoma(43;0.156)	GBM - Glioblastoma multiforme(28;0.0386)		AAAAACAAGAGTCCCTCTAAA	0.463000			T	LHFP|RAD51L1|LPP|HEI10|COX6C|CMKOR1|NFIB|ALDH2|CCNB1IP1|EBF1|WIF1|FHIT	lipoma|leiomyoma|pleiomorphic salivary gland adenoma								17	70					4.14922e-12	4.47757e-12	1	0
C12orf63	374467	broad.mit.edu	37	12	97158907	97158907	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:97158907G>C	uc001tet.1	+	27	3545	c.3467G>C	c.(3466-3468)AGA>ACA	p.R1156T		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1156										skin(6)|ovary(1)	7						AAGAATACTAGAATGCATAAA	0.323000													37	113					0	0	0	0
CAMKK2	10645	broad.mit.edu	37	12	121678561	121678561	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:121678561G>A	uc001tzu.2	-	17	1832	c.1708C>T	c.(1708-1710)CCC>TCC	p.P570S	CAMKK2_uc001tzt.2_3'UTR|CAMKK2_uc001tzv.2_Missense_Mutation_p.P570S|CAMKK2_uc001tzw.2_Missense_Mutation_p.P527S|CAMKK2_uc001tzx.2_3'UTR|CAMKK2_uc001tzy.2_3'UTR|CAMKK2_uc001tzz.1_Intron|CAMKK2_uc001uaa.1_Intron	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	570					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GGGGAGCCGGGGGCGGGGGCC	0.711000													8	41					0	0	0	0
WDR66	144406	broad.mit.edu	37	12	122359424	122359424	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr12:122359424G>C	uc009zxk.2	+	2	355	c.213G>C	c.(211-213)AAG>AAC	p.K71N		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	71	Glu-rich.						calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		aggaCAAAAAGATTGTCATGG	0.323000													16	30					0	0	0	0
NALCN	259232	broad.mit.edu	37	13	101759854	101759854	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr13:101759854G>A	uc001vox.1	-	22	2752	c.2563C>T	c.(2563-2565)CGA>TGA	p.R855*		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	855	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AAGCGTGCTCGGACCACCACC	0.507000													60	68					0	0	0	0
PSME1	5720	broad.mit.edu	37	14	24607452	24607452	+	Silent	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr14:24607452C>G	uc001wmg.2	+	8	601	c.507C>G	c.(505-507)GGC>GGG	p.G169G	PSME1_uc001wmh.2_Silent_p.G169G	NM_006263	NP_006254	Q06323	PSME1_HUMAN	proteasome activator subunit 1 isoform 1	169					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|proteasome activator complex				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00831)		AGCTAGAAGGCTTCCACACTC	0.473000													134	383					0	0	0	0
BMP4	652	broad.mit.edu	37	14	54418769	54418769	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr14:54418769C>T	uc001xal.3	-	2	359	c.172G>A	c.(172-174)GAG>AAG	p.E58K	BMP4_uc010aoh.2_Missense_Mutation_p.E58K|BMP4_uc001xao.3_Missense_Mutation_p.E58K|BMP4_uc001xan.3_Missense_Mutation_p.E58K	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	58					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						AGTGTCGCCTCGAAGTCCCGC	0.607000													29	81					0	0	0	0
PRKCH	5583	broad.mit.edu	37	14	61857999	61857999	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr14:61857999C>T	uc001xfn.2	+	2	725	c.420C>T	c.(418-420)TTC>TTT	p.F140F	PRKCH_uc010tsa.1_Intron	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	140					intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		CCGGGAGTTTCACTGAAGGTA	0.338000													28	86					0	0	0	0
DISP2	85455	broad.mit.edu	37	15	40659622	40659622	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:40659622C>A	uc001zlk.1	+	8	1398	c.1309C>A	c.(1309-1311)CTG>ATG	p.L437M		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	437					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CAAGTACAGCCTGCTCTTCCT	0.582000													148	595					8.23634e-74	9.65196e-74	1	0
SPINT1	6692	broad.mit.edu	37	15	41145416	41145416	+	Silent	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:41145416C>A	uc001zna.2	+	3	774	c.570C>A	c.(568-570)CGC>CGA	p.R190R	SPINT1_uc001znb.2_Silent_p.R190R|SPINT1_uc001znc.2_Silent_p.R190R|SPINT1_uc010ucs.1_Silent_p.R190R	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	190						extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		CAGATTGGCGCCTACTGCGGG	0.617000													46	145					2.24722e-20	2.53446e-20	1	0
CORO2B	10391	broad.mit.edu	37	15	69011053	69011053	+	Silent	SNP	C	T	T	rs3751554	byFrequency	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:69011053C>T	uc002arj.3	+	9	1013	c.984C>T	c.(982-984)CAC>CAT	p.H328H	CORO2B_uc010bic.2_Silent_p.H323H|CORO2B_uc002ark.2_Silent_p.H95H	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	328					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						TGCCCAAGCACGGGCTGGATG	0.592000													7	40					0	0	0	0
KIF23	9493	broad.mit.edu	37	15	69733141	69733141	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:69733141G>A	uc002asb.2	+	18	2219	c.2102G>A	c.(2101-2103)GGC>GAC	p.G701D	KIF23_uc002asc.2_Intron|KIF23_uc010bii.2_Missense_Mutation_p.G591D|KIF23_uc010ukc.1_Intron	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	701					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						ATTTCCAACGGCCAGCAACTC	0.398000													3	68					0	0	0	0
SH2D7	646892	broad.mit.edu	37	15	78393518	78393518	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:78393518C>T	uc010blb.1	+	5	923	c.923C>T	c.(922-924)CCC>CTC	p.P308L		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	308											0						GACCAGGGTCCCACAGAGTCT	0.617000													8	26					0	0	0	0
KIF7	374654	broad.mit.edu	37	15	90176168	90176168	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:90176168C>T	uc002bof.2	-	14	2855	c.2778G>A	c.(2776-2778)CGG>CGA	p.R926R	KIF7_uc010upw.1_Silent_p.R412R	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	926	Potential.				microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCAGCGCCCGCCGCTGCTGTA	0.622000													17	19					0	0	0	0
ZNF710	374655	broad.mit.edu	37	15	90611606	90611606	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:90611606G>A	uc002bov.1	+	2	1360	c.1237G>A	c.(1237-1239)GGC>AGC	p.G413S		NM_198526	NP_940928	Q8N1W2	ZN710_HUMAN	zinc finger protein 710	413	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.00769)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.129)			CGTCGAGTGCGGCCTGGACTT	0.652000													17	66					0	0	0	0
LRRK1	79705	broad.mit.edu	37	15	101588744	101588744	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:101588744A>T	uc002bwr.2	+	22	3500	c.3181A>T	c.(3181-3183)ACC>TCC	p.T1061S	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_Intron	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1061					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CAGGAAAGTCACCATTTACAG	0.433000													42	135					0	0	0	0
PRSS27	83886	broad.mit.edu	37	16	2762696	2762696	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr16:2762696G>A	uc002crf.2	-	6	1189	c.798C>T	c.(796-798)ACC>ACT	p.T266T	PRSS27_uc002cre.2_Silent_p.T230T|PRSS27_uc002crg.2_Silent_p.T164T	NM_031948	NP_114154	Q9BQR3	PRS27_HUMAN	marapsin precursor	266	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						TGTGGTGGGCGGTGACACGGA	0.662000													5	8					0	0	0	0
VWA3A	146177	broad.mit.edu	37	16	22144336	22144336	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr16:22144336C>T	uc010vbq.1	+	20	2084	c.1988C>T	c.(1987-1989)GCC>GTC	p.A663V	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.A671V	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	663	VWFA 1.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		GCCCGCTATGCCAGTCACACT	0.607000													3	33					0	0	0	0
PLK1	5347	broad.mit.edu	37	16	23700659	23700659	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr16:23700659C>T	uc002dlz.1	+	8	1424	c.1371C>T	c.(1369-1371)GAC>GAT	p.D457D		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	457	POLO box 1.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		TAGAGCGTGACGGCACTGAGT	0.557000													43	81					0	0	0	0
CDH13	1012	broad.mit.edu	37	16	83065808	83065808	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr16:83065808C>G	uc002fgx.2	+	3	471	c.351C>G	c.(349-351)ATC>ATG	p.I117M	CDH13_uc010chh.2_Missense_Mutation_p.I117M|CDH13_uc010vns.1_Missense_Mutation_p.I164M|CDH13_uc010vnt.1_Intron|CDH13_uc010vnu.1_Missense_Mutation_p.I117M	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	117					adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GGAAAGACATCCAGGGCTCCT	0.468000													10	24					0	0	0	0
ZC3H18	124245	broad.mit.edu	37	16	88691022	88691022	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr16:88691022G>A	uc002fky.2	+	12	2111	c.1911G>A	c.(1909-1911)GTG>GTA	p.V637V	ZC3H18_uc010voz.1_Silent_p.V661V|ZC3H18_uc010chw.2_RNA|ZC3H18_uc002fkz.2_5'Flank	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	637	Ser-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		AGAAGTCAGTGAAGAAGCCGG	0.667000													13	37					0	0	0	0
MYH3	4621	broad.mit.edu	37	17	10543464	10543464	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr17:10543464G>A	uc002gmq.1	-	21	2608	c.2531C>T	c.(2530-2532)GCA>GTA	p.A844V		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	844	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CTCAGTCTCTGCACTCTTGAG	0.468000													50	86					0	0	0	0
SREBF1	6720	broad.mit.edu	37	17	17716991	17716991	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr17:17716991C>T	uc002gru.1	-	17	3188	c.2994G>A	c.(2992-2994)CAG>CAA	p.Q998Q	SREBF1_uc002gro.3_5'Flank|SREBF1_uc002grp.1_Silent_p.Q617Q|SREBF1_uc002grq.1_Silent_p.Q517Q|SREBF1_uc002grr.1_Silent_p.Q744Q|SREBF1_uc002grs.1_Silent_p.Q974Q|SREBF1_uc002grt.1_Silent_p.Q1028Q	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	998	Cytoplasmic (Potential).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						TGCTGGTGCCCTGGGCTGCTG	0.716000													2	2					0	0	0	0
AATK	9625	broad.mit.edu	37	17	79095073	79095073	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr17:79095073G>A	uc010dia.2	-	11	2743	c.2663C>T	c.(2662-2664)CCA>CTA	p.P888L	AATK_uc010dhz.2_RNA	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	888						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GCGGAAGGCTGGCACCACATC	0.657000													4	28					0	0	0	0
BRD4	23476	broad.mit.edu	37	19	15350543	15350543	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:15350543G>A	uc002nar.2	-	16	3594	c.3372C>T	c.(3370-3372)CCC>CCT	p.P1124P		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1124					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			AGGGGCTGAAGGGCTCGCTGC	0.692000			T	NUT|C15orf55	lethal midline carcinoma of young people								29	31					0	0	0	0
KIAA0892	23383	broad.mit.edu	37	19	19431858	19431858	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:19431858G>A	uc002nmk.3	+	1	229	c.190G>A	c.(190-192)GAG>AAG	p.E64K	SF4_uc002nmh.2_5'Flank|SF4_uc002nmi.2_5'Flank|SF4_uc002nmj.2_5'Flank|SF4_uc010xqr.1_5'Flank|SF4_uc010xqs.1_5'Flank	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	64	Sufficient for interaction with NIPBL.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						GCAGCGCATCGAGGCCCGTAC	0.672000													6	21					0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40367904	40367904	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:40367904G>T	uc002omp.3	-	29	13064	c.13056C>A	c.(13054-13056)TGC>TGA	p.C4352*		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4352	TIL 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGTTTTCTGGGCAGGTGATCT	0.617000													45	167					1.32136e-16	1.44674e-16	1	0
CEACAM4	1089	broad.mit.edu	37	19	42128134	42128134	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:42128134G>A	uc002orh.1	-	3	543	c.432C>T	c.(430-432)AAC>AAT	p.N144N	CEACAM4_uc010xwd.1_Silent_p.N144N	NM_001817	NP_001808	O75871	CEAM4_HUMAN	carcinoembryonic antigen-related cell adhesion	144	Extracellular (Potential).					integral to plasma membrane|membrane fraction					0						GGCCTGGGACGTTGTTTTCTG	0.602000													37	74					0	0	0	0
ZNF230	7773	broad.mit.edu	37	19	44514424	44514424	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:44514424G>A	uc002oyb.1	+	5	484	c.233G>A	c.(232-234)GGC>GAC	p.G78D		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	78					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CTTATAGGCGGCAAGACTATT	0.423000													3	59					0	0	0	0
GRLF1	2909	broad.mit.edu	37	19	47424000	47424000	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:47424000G>A	uc010ekv.2	+	1	2068	c.2068G>A	c.(2068-2070)GAT>AAT	p.D690N		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	690					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GGGCCGGCGGGATAATCATTT	0.463000													10	30					0	0	0	0
CLEC11A	6320	broad.mit.edu	37	19	51227677	51227677	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:51227677G>C	uc002psy.2	+	3	523	c.345G>C	c.(343-345)CTG>CTC	p.L115L		NM_002975	NP_002966	Q9Y240	CLC11_HUMAN	stem cell growth factor precursor	115					positive regulation of cell proliferation	cytoplasm|extracellular region	growth factor activity|sugar binding			ovary(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TGGGCCGCCTGGCCGGCCTGG	0.701000											OREG0025643	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	24					0	0	0	0
TMC4	147798	broad.mit.edu	37	19	54664094	54664094	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:54664094G>C	uc010erf.2	-	15	2220	c.2088C>G	c.(2086-2088)GTC>GTG	p.V696V	LENG1_uc002qdm.2_5'Flank|TMC4_uc002qdn.2_Silent_p.V410V|TMC4_uc002qdo.2_Silent_p.V690V	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	696	Cytoplasmic (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GTGCCAGGAAGACTTTATTCT	0.617000													42	176					0	0	0	0
SYT5	6861	broad.mit.edu	37	19	55686277	55686278	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr19:55686277_55686278TC>CT	uc002qjm.1	-	6	1858_1859	c.798_799GA>AG	c.(796-801)CTGAAG>CTAGAG	p.K267E	SYT5_uc002qjp.2_Missense_Mutation_p.K263E|SYT5_uc002qjn.1_Missense_Mutation_p.K267E|SYT5_uc002qjo.1_Missense_Mutation_p.K266E	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	267	Cytoplasmic (Potential).|C2 2.				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		TCCATCTTCTTCAGGTTTTTAG	0.579000													58	93					0	0	0	0
KIF3C	3797	broad.mit.edu	37	2	26203523	26203523	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:26203523G>T	uc002rgu.2	-	1	1921	c.1264C>A	c.(1264-1266)CCT>ACT	p.P422T	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Missense_Mutation_p.P422T	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	422	Potential.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGCCCTCAGGGTACCCAGGC	0.662000													56	175					2.53126e-37	2.94333e-37	1	0
HEATR5B	54497	broad.mit.edu	37	2	37215951	37215951	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:37215951G>A	uc002rpp.1	-	35	5845	c.5749C>T	c.(5749-5751)CGT>TGT	p.R1917C	HEATR5B_uc002rpo.1_Missense_Mutation_p.R229C|HEATR5B_uc010ezy.1_Missense_Mutation_p.R412C	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1917							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GAAAGGGCACGATTGGAATGC	0.358000													33	75					0	0	0	0
USP34	9736	broad.mit.edu	37	2	61597672	61597672	+	Silent	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:61597672A>G	uc002sbe.2	-	9	1141	c.1119T>C	c.(1117-1119)AAT>AAC	p.N373N		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	373					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GCTCCACCACATTGTTGCTAA	0.303000													29	86					0	0	0	0
GFPT1	2673	broad.mit.edu	37	2	69601183	69601183	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:69601183T>G	uc002sfh.2	-	2	249	c.70A>C	c.(70-72)ATC>CTC	p.I24L		NM_002056	NP_002047	Q06210	GFPT1_HUMAN	glucosamine-fructose-6-phosphate	24	Glutamine amidotransferase type-2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			skin(1)	1						AGGCCTTTGATTAGGGTCTCC	0.323000													43	127					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530937	80530937	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:80530937A>G	uc002sok.1	-	2	278	c.8T>C	c.(7-9)TTC>TCC	p.F3S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	3						axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						GAGCAGCAGGAAATCCATTAG	0.562000										HNSCC(69;0.2)			19	59					0	0	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540069	133540069	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:133540069T>C	uc002ttp.2	-	14	4689	c.4315A>G	c.(4315-4317)ACA>GCA	p.T1439A	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1439							protein binding				0						GTACTGCTTGTTTCAAAAGTG	0.572000													25	63					0	0	0	0
BAZ2B	29994	broad.mit.edu	37	2	160239306	160239306	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:160239306T>A	uc002uao.2	-	25	4121	c.3769A>T	c.(3769-3771)ATC>TTC	p.I1257F	BAZ2B_uc002uap.2_Missense_Mutation_p.I1221F	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GCATGAATGATTCTGAGCCTT	0.398000													29	85					0	0	0	0
ITGB6	3694	broad.mit.edu	37	2	161030575	161030575	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:161030575G>A	uc002ubh.2	-	5	685	c.669C>T	c.(667-669)TTC>TTT	p.F223F	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Silent_p.F223F|ITGB6_uc010zcq.1_Silent_p.F181F|ITGB6_uc010fov.1_Silent_p.F223F	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	223	Extracellular (Potential).|VWFA.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						CAATTTCATTGAATCTTTCAG	0.353000													17	52					0	0	0	0
OSBPL6	114880	broad.mit.edu	37	2	179214036	179214036	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:179214036C>T	uc002ulx.2	+	12	1451	c.1073C>T	c.(1072-1074)CCT>CTT	p.P358L	OSBPL6_uc002ulw.2_Missense_Mutation_p.P327L|OSBPL6_uc002uly.2_Missense_Mutation_p.P383L|OSBPL6_uc010zfe.1_Missense_Mutation_p.P327L|OSBPL6_uc002ulz.2_Missense_Mutation_p.P358L|OSBPL6_uc002uma.2_Missense_Mutation_p.P362L	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	358					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			CAGACTCCCCCTAGCCACCTC	0.438000													83	278					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179476145	179476145	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:179476145G>A	uc010zfg.1	-	218	43331	c.43107C>T	c.(43105-43107)AGC>AGT	p.S14369S	uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.S8064S|TTN_uc010zfi.1_Silent_p.S7997S|TTN_uc010zfj.1_Silent_p.S7872S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15296							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGATGGCTCGCTGACACCAA	0.408000													24	89					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238253355	238253355	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:238253355C>G	uc002vwl.2	-	36	7591	c.7306G>C	c.(7306-7308)GAG>CAG	p.E2436Q	COL6A3_uc002vwo.2_Missense_Mutation_p.E2230Q|COL6A3_uc010znj.1_Missense_Mutation_p.E1829Q|COL6A3_uc002vwj.2_5'Flank|COL6A3_uc002vwp.1_Missense_Mutation_p.E257Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2436	VWFA 11.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CAGTTGCTCTCAGCAATGGTC	0.557000													41	160					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238253401	238253401	+	Silent	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:238253401C>G	uc002vwl.2	-	36	7545	c.7260G>C	c.(7258-7260)CGG>CGC	p.R2420R	COL6A3_uc002vwo.2_Silent_p.R2214R|COL6A3_uc010znj.1_Silent_p.R1813R|COL6A3_uc002vwj.2_5'Flank|COL6A3_uc002vwp.1_Silent_p.R241R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2420	VWFA 11.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CATCTCGCATCCGGCCGAAAG	0.567000													57	173					0	0	0	0
KIAA1755	85449	broad.mit.edu	37	20	36850904	36850904	+	Silent	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr20:36850904G>T	uc002xhy.1	-	10	2636	c.2364C>A	c.(2362-2364)ACC>ACA	p.T788T	KIAA1755_uc002xhx.1_Silent_p.T66T	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	788										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				GCCTGGCCAGGGTGGCTCCAC	0.637000											OREG0025921	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	95					2.75727e-19	3.0865e-19	1	0
ZMYND8	23613	broad.mit.edu	37	20	45867756	45867756	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr20:45867756G>A	uc002xta.1	-	15	2605	c.2351C>T	c.(2350-2352)ACG>ATG	p.T784M	ZMYND8_uc010ghq.1_Missense_Mutation_p.T461M|ZMYND8_uc010ghr.1_Missense_Mutation_p.T759M|ZMYND8_uc002xst.1_Missense_Mutation_p.T712M|ZMYND8_uc002xsu.1_Intron|ZMYND8_uc002xsv.1_Missense_Mutation_p.T712M|ZMYND8_uc002xsw.1_Missense_Mutation_p.T536M|ZMYND8_uc002xsx.1_Missense_Mutation_p.T536M|ZMYND8_uc002xsy.1_Missense_Mutation_p.T759M|ZMYND8_uc002xsz.1_Missense_Mutation_p.T721M|ZMYND8_uc010zxy.1_Missense_Mutation_p.T811M|ZMYND8_uc002xtb.1_Missense_Mutation_p.T804M|ZMYND8_uc002xss.2_Missense_Mutation_p.T784M|ZMYND8_uc010zxz.1_Intron|ZMYND8_uc002xtc.1_Missense_Mutation_p.T804M|ZMYND8_uc002xtd.1_Missense_Mutation_p.T779M|ZMYND8_uc002xte.1_Missense_Mutation_p.T784M|ZMYND8_uc010zya.1_Missense_Mutation_p.T784M|ZMYND8_uc002xtf.1_Missense_Mutation_p.T804M|ZMYND8_uc002xtg.2_Missense_Mutation_p.T778M|ZMYND8_uc010ghs.1_Missense_Mutation_p.T778M|ZMYND8_uc002xsr.1_Translation_Start_Site	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	784							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GACGGTGACCGTGGAGGACGT	0.692000													36	93					0	0	0	0
STAU1	6780	broad.mit.edu	37	20	47752436	47752436	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr20:47752436G>C	uc002xud.2	-	6	954	c.543C>G	c.(541-543)CTC>CTG	p.L181L	STAU1_uc002xua.2_Silent_p.L100L|STAU1_uc002xub.2_Silent_p.L100L|STAU1_uc002xuc.2_Silent_p.L100L|STAU1_uc002xue.2_Silent_p.L100L|STAU1_uc002xuf.2_Silent_p.L100L|STAU1_uc002xug.2_Silent_p.L181L	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	181						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			CAGATTTATTGAGATTTTCTT	0.284000													12	54					0	0	0	0
CYP24A1	1591	broad.mit.edu	37	20	52779266	52779266	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr20:52779266G>T	uc002xwv.2	-	7	1378	c.980C>A	c.(979-981)GCG>GAG	p.A327E	CYP24A1_uc002xwu.1_Missense_Mutation_p.A185E|CYP24A1_uc002xww.2_Missense_Mutation_p.A327E	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	327					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	CGTTTCCACCGCAGCCAGCTG	0.418000													26	64					3.73148e-12	4.05595e-12	1	0
CXADR	1525	broad.mit.edu	37	21	18937987	18937987	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr21:18937987A>G	uc002yki.2	+	7	1193	c.1075A>G	c.(1075-1077)AGC>GGC	p.S359G	CXADR_uc002ykj.1_Intron	NM_001338	NP_001329	P78310	CXAR_HUMAN	coxsackie virus and adenovirus receptor	359	Cytoplasmic (Potential).				blood coagulation|cell adhesion|interspecies interaction between organisms|leukocyte migration|regulation of immune response	adherens junction|basolateral plasma membrane|extracellular region|integral to plasma membrane|nucleus|tight junction	receptor activity			ovary(1)	1				Epithelial(23;0.000206)|all cancers(11;0.000302)|OV - Ovarian serous cystadenocarcinoma(11;0.0194)|Lung(58;0.0233)|COAD - Colon adenocarcinoma(22;0.0389)|Colorectal(24;0.0483)|LUSC - Lung squamous cell carcinoma(23;0.0782)		TCCAGCACAGAGCAAGGATGG	0.458000													28	71					0	0	0	0
DGCR2	9993	broad.mit.edu	37	22	19050747	19050747	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr22:19050747G>A	uc002zoq.1	-	5	841	c.593C>T	c.(592-594)TCC>TTC	p.S198F	DGCR2_uc002zor.1_5'UTR|DGCR2_uc011agr.1_Missense_Mutation_p.S154F	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	198	Extracellular (Potential).|C-type lectin.				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					ACCTTCCAAGGAGCGGTTCCG	0.582000													10	42					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23055518	23055518	+	RNA	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr22:23055518G>T	uc011aim.1	+	153		c.9233G>T								Parts of antibodies, mostly variable regions.												0						GCCAGGCCAGGCCCCTGTGCT	0.592000													12	44					1.99824e-07	2.11081e-07	1	0
SULT4A1	25830	broad.mit.edu	37	22	44234792	44234792	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr22:44234792G>A	uc003bee.1	-	4	579	c.463C>T	c.(463-465)CGA>TGA	p.R155*	SULT4A1_uc003bed.1_Nonsense_Mutation_p.R76*|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	155					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		AAGGTGCCTCGGTAGCTCATG	0.537000													20	69					0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962708	50962708	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr22:50962708C>T	uc003bma.2	-	2	309	c.133G>A	c.(133-135)GAG>AAG	p.E45K	SCO2_uc003blz.3_Missense_Mutation_p.E45K	NM_005138	NP_005129	O43819	SCO2_HUMAN	cytochrome oxidase deficient homolog 2	45					cell redox homeostasis|cellular copper ion homeostasis|copper ion transport|oxidation-reduction process|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCACCTGTCTCTGCAGGGCCC	0.692000													29	63					0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962761	50962761	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr22:50962761C>T	uc003bma.2	-	2	256	c.80G>A	c.(79-81)GGA>GAA	p.G27E	SCO2_uc003blz.3_Missense_Mutation_p.G27E	NM_005138	NP_005129	O43819	SCO2_HUMAN	cytochrome oxidase deficient homolog 2	27					cell redox homeostasis|cellular copper ion homeostasis|copper ion transport|oxidation-reduction process|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGCCTGGCCTCCCAGGGTCCC	0.662000													10	60					0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962769	50962769	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr22:50962769C>T	uc003bma.2	-	2	248	c.72G>A	c.(70-72)GGG>GGA	p.G24G	SCO2_uc003blz.3_Silent_p.G24G	NM_005138	NP_005129	O43819	SCO2_HUMAN	cytochrome oxidase deficient homolog 2	24					cell redox homeostasis|cellular copper ion homeostasis|copper ion transport|oxidation-reduction process|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTCCCAGGGTCCCAGGGAGGA	0.652000													9	63					0	0	0	0
ITPR1	3708	broad.mit.edu	37	3	4699938	4699938	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:4699938G>A	uc003bqa.2	+	13	1475	c.1127G>A	c.(1126-1128)CGT>CAT	p.R376H	ITPR1_uc010hca.1_Missense_Mutation_p.R361H|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.R361H	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	376	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		ACCACTCTGCGTGGAGGTGAC	0.493000													20	44					0	0	0	0
SCN11A	11280	broad.mit.edu	37	3	38888755	38888755	+	Silent	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:38888755C>A	uc011ays.1	-	26	5005	c.4806G>T	c.(4804-4806)GTG>GTT	p.V1602V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1602	IV.|Helical; Name=S6 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTCTAAAATCACAGCAATGT	0.413000													4	123					0.00909568	0.00928131	1	0
CSRNP1	64651	broad.mit.edu	37	3	39186502	39186502	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:39186502T>A	uc003cjg.2	-	3	665	c.451A>T	c.(451-453)ATG>TTG	p.M151L	CSRNP1_uc003cjh.2_Missense_Mutation_p.M151L	NM_033027	NP_149016	Q96S65	CSRN1_HUMAN	AXIN1 up-regulated 1	151					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(4)|skin(1)	5						CACTGCAGCATCTCCAACTTC	0.617000													27	39					0	0	0	0
COL7A1	1294	broad.mit.edu	37	3	48626135	48626135	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:48626135G>A	uc003ctz.2	-	19	2528	c.2527C>T	c.(2527-2529)CGA>TGA	p.R843*		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	843	Nonhelical region (NC1).|Fibronectin type-III 7.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCAGTCACTCGCACTGAGTAG	0.617000													29	54					0	0	0	0
HPS3	84343	broad.mit.edu	37	3	148889972	148889972	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:148889972A>G	uc003ewu.1	+	17	3118	c.2978A>G	c.(2977-2979)TAT>TGT	p.Y993C	CP_uc011bnr.1_Intron|HPS3_uc011bnq.1_Missense_Mutation_p.Y828C|HPS3_uc003ewv.1_RNA	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	993						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TTCTTGCCATATCTTCTCTAT	0.343000									Hermansky-Pudlak_syndrome				44	57					0	0	0	0
EIF4G1	1981	broad.mit.edu	37	3	184039213	184039214	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:184039213_184039214GC>TT	uc003fnp.2	+	10	1039_1040	c.841_842GC>TT	c.(841-843)GCA>TTA	p.A281L	EIF4G1_uc003fno.1_Missense_Mutation_p.A222L|EIF4G1_uc010hxw.1_Missense_Mutation_p.A117L|EIF4G1_uc003fnt.2_5'UTR|EIF4G1_uc003fnq.2_Missense_Mutation_p.A194L|EIF4G1_uc003fnr.2_Missense_Mutation_p.A117L|EIF4G1_uc010hxx.2_Missense_Mutation_p.A288L|EIF4G1_uc003fns.2_Missense_Mutation_p.A241L|EIF4G1_uc010hxy.2_Missense_Mutation_p.A288L|EIF4G1_uc003fnv.3_Missense_Mutation_p.A281L|EIF4G1_uc003fnu.3_Missense_Mutation_p.A281L|EIF4G1_uc003fnw.2_Missense_Mutation_p.A288L|EIF4G1_uc003fnx.2_Missense_Mutation_p.A85L|EIF4G1_uc003fny.3_Missense_Mutation_p.A85L	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	281					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCTAATCTCGCAGTCCTCTCT	0.550000													24	116					0	0	0	0
TP63	8626	broad.mit.edu	37	3	189526081	189526081	+	Silent	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:189526081G>T	uc003fry.2	+	4	434	c.345G>T	c.(343-345)GGG>GGT	p.G115G	TP63_uc003frx.2_Silent_p.G115G|TP63_uc003frz.2_Silent_p.G115G|TP63_uc010hzc.1_Silent_p.G115G|TP63_uc003fsa.2_Silent_p.G21G|TP63_uc003fsb.2_Silent_p.G21G|TP63_uc003fsc.2_Silent_p.G21G|TP63_uc003fsd.2_Silent_p.G21G|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_5'UTR	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	115					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CGAACCTGGGGCTCCTGAACA	0.567000									Hay-Wells_syndrome	HNSCC(45;0.13)			143	152					6.50729e-104	7.80875e-104	1	0
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	Silent	SNP	A	G	G	rs12107841	by1000genomes	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:195400728A>G	uc003fuw.2	+	9	1218	c.24A>G	c.(22-24)CCA>CCG	p.P8P	SDHAP2_uc011btb.1_Missense_Mutation_p.S156G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GATTGTGCCCAGCCTGTACGC	0.587000													9	105					0	0	0	0
C3orf34	84984	broad.mit.edu	37	3	196434583	196434583	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:196434583T>A	uc011btw.1	-	3	725	c.343A>T	c.(343-345)AAG>TAG	p.K115*		NM_032898	NP_116287	Q96LK0	CEP19_HUMAN	hypothetical protein LOC84984	111						centriole|spindle pole					0	all_cancers(143;1.48e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;1.08e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00301)		GCAAGCTCCTTGTCATCTAGT	0.398000													66	330					0	0	0	0
WDFY3	23001	broad.mit.edu	37	4	85731060	85731060	+	Silent	SNP	T	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:85731060T>A	uc003hpd.2	-	14	2733	c.2325A>T	c.(2323-2325)GTA>GTT	p.V775V	WDFY3_uc003hpf.2_Silent_p.V775V	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	775						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AATCTGTGGCTACTTTGTAAA	0.363000													29	75					0	0	0	0
MANBA	4126	broad.mit.edu	37	4	103578879	103578879	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:103578879T>C	uc003hwg.2	-	12	1764	c.1664A>G	c.(1663-1665)TAT>TGT	p.Y555C	MANBA_uc011ces.1_Missense_Mutation_p.Y498C	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	555					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		CTGATATCCATATTCAGATGC	0.358000													33	105					0	0	0	0
TACR3	6870	broad.mit.edu	37	4	104511031	104511031	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:104511031G>A	uc003hxe.1	-	5	1349	c.1206C>T	c.(1204-1206)ACC>ACT	p.T402T		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	402	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TTCTGGTCACGGTGTACATAC	0.502000													88	281					0	0	0	0
PDE5A	8654	broad.mit.edu	37	4	120528105	120528105	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:120528105G>T	uc003idh.2	-	2	655	c.500C>A	c.(499-501)GCC>GAC	p.A167D	PDE5A_uc003idf.2_Missense_Mutation_p.A125D|PDE5A_uc003idg.2_Missense_Mutation_p.A115D	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	167	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	GTGACATAAGGCTGTGACATC	0.428000													49	110					6.61955e-31	7.57964e-31	1	0
RXFP1	59350	broad.mit.edu	37	4	159560442	159560442	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:159560442C>G	uc003ipz.2	+	14	1156	c.1074C>G	c.(1072-1074)ATC>ATG	p.I358M	RXFP1_uc010iqj.1_Missense_Mutation_p.I187M|RXFP1_uc011cja.1_Missense_Mutation_p.I253M|RXFP1_uc010iqo.2_Missense_Mutation_p.I310M|RXFP1_uc011cjb.1_Missense_Mutation_p.I256M|RXFP1_uc010iqk.2_Missense_Mutation_p.I226M|RXFP1_uc011cjc.1_Missense_Mutation_p.I277M|RXFP1_uc011cjd.1_Missense_Mutation_p.I277M|RXFP1_uc010iql.2_Missense_Mutation_p.I202M|RXFP1_uc011cje.1_Missense_Mutation_p.I385M|RXFP1_uc010iqm.2_Missense_Mutation_p.I325M|RXFP1_uc011cjf.1_Missense_Mutation_p.I227M|RXFP1_uc010iqn.2_Missense_Mutation_p.I303M	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	358	Extracellular (Potential).|LRR 9.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		TTTCAAATATCCAACAAAGGA	0.274000													14	75					0	0	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160252611	160252611	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:160252611A>G	uc003iqg.3	+	8	1323	c.1013A>G	c.(1012-1014)AAT>AGT	p.N338S		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	338	N-terminal Ras-GEF.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TTGTGGGTAAATAATCACTTC	0.303000													22	63					0	0	0	0
WWC2	80014	broad.mit.edu	37	4	184203868	184203868	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr4:184203868A>G	uc010irx.2	+	18	2874	c.2692A>G	c.(2692-2694)ATG>GTG	p.M898V	WWC2_uc003ivk.3_Missense_Mutation_p.M693V|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Missense_Mutation_p.M580V|WWC2_uc003ivn.3_Missense_Mutation_p.M413V|WWC2_uc010irz.2_Missense_Mutation_p.M239V|WWC2_uc003ivo.3_Missense_Mutation_p.M26V	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	898										ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		TAGGCTAACAATGCTAAGAGA	0.413000													2	4					0	0	0	0
CTNND2	1501	broad.mit.edu	37	5	11384811	11384811	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr5:11384811G>C	uc003jfa.1	-	7	1288	c.1143C>G	c.(1141-1143)GCC>GCG	p.A381A	CTNND2_uc010itt.2_Silent_p.A290A|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	381					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGGTGGCCGTGGCATACAGCT	0.697000													10	30					0	0	0	0
HCN1	348980	broad.mit.edu	37	5	45396672	45396672	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr5:45396672G>C	uc003jok.2	-	4	1177	c.1152C>G	c.(1150-1152)ACC>ACG	p.T384T		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	384	Helical; Name=Segment S6; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TGGCATAGCAGGTGGCCCCGA	0.507000													23	76					0	0	0	0
TTC37	9652	broad.mit.edu	37	5	94849321	94849322	+	Missense_Mutation	DNP	TA	AT	AT			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr5:94849321_94849322TA>AT	uc003klb.2	-	27	3001_3002	c.2731_2732TA>AT	c.(2731-2733)TAT>ATT	p.Y911I		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	911							binding			ovary(3)|pancreas(1)	4						CATGGTGTCATAACTTCCAACT	0.332000													28	59					0	0	0	0
UIMC1	51720	broad.mit.edu	37	5	176396609	176396609	+	Silent	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr5:176396609G>T	uc011dfp.1	-	5	623	c.456C>A	c.(454-456)CTC>CTA	p.L152L	UIMC1_uc003mfc.1_Nonsense_Mutation_p.S28*|UIMC1_uc003mfd.1_Nonsense_Mutation_p.S28*|UIMC1_uc003mfg.1_Intron|UIMC1_uc003mfh.1_Silent_p.L152L|UIMC1_uc010jkj.1_Silent_p.L152L|UIMC1_uc003mff.1_Nonsense_Mutation_p.S28*	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	152	Necessary for interaction with NR6A1 N- terminus.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGCCTTCAGTGAGCCCAGAGT	0.517000													23	22					1.36565e-18	1.51738e-18	1	0
OR2V2	285659	broad.mit.edu	37	5	180582306	180582306	+	Missense_Mutation	SNP	G	T	T	rs150156274	byFrequency	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr5:180582306G>T	uc011dhj.1	+	1	364	c.364G>T	c.(364-366)GAC>TAC	p.D122Y		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.D122N(1)		ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATGGCTTATGACCGCTATGT	0.522000													59	72					1.77205e-36	2.04467e-36	1	0
OR2B6	26212	broad.mit.edu	37	6	27925495	27925495	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:27925495G>A	uc011dkx.1	+	1	477	c.477G>A	c.(475-477)TTG>TTA	p.L159L		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAGTGTGGTTGTCTACCCTGA	0.488000													44	103					0	0	0	0
PKHD1	5314	broad.mit.edu	37	6	51947979	51947979	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:51947979C>T	uc003pah.1	-	3	403	c.127G>A	c.(127-129)GAT>AAT	p.D43N	PKHD1_uc003pai.2_Missense_Mutation_p.D43N	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	43	Extracellular (Potential).|IPT/TIG 1; atypical.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AACCTACCATCAAAAATGACT	0.398000													13	117					0	0	0	0
ZNF451	26036	broad.mit.edu	37	6	56999545	56999545	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:56999545C>T	uc003pdm.1	+	7	803	c.579C>T	c.(577-579)TTC>TTT	p.F193F	ZNF451_uc003pdl.2_Silent_p.F193F|ZNF451_uc003pdn.1_Silent_p.F193F|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.F193F	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	193	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TGAGTAGGTTCGATCACTCTC	0.353000													32	96					0	0	0	0
LGSN	51557	broad.mit.edu	37	6	63990490	63990490	+	Silent	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:63990490A>G	uc003peh.2	-	4	1000	c.966T>C	c.(964-966)GAT>GAC	p.D322D	LGSN_uc003pei.2_Missense_Mutation_p.I182T	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	322					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TTTTCTTCCTATCGACATCCC	0.438000													33	81					0	0	0	0
CD109	135228	broad.mit.edu	37	6	74516767	74516767	+	Missense_Mutation	SNP	C	G	G	rs141815508		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:74516767C>G	uc003php.2	+	25	3586	c.3161C>G	c.(3160-3162)ACT>AGT	p.T1054S	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.T1054S|CD109_uc010kba.2_Missense_Mutation_p.T977S	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1054						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TATATTGTAACTTCTCTCCTG	0.363000													16	51					0	0	0	0
MYO6	4646	broad.mit.edu	37	6	76527375	76527375	+	Silent	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:76527375A>G	uc003pih.1	+	2	390	c.111A>G	c.(109-111)AAA>AAG	p.K37K	MYO6_uc003pig.1_Silent_p.K37K|MYO6_uc003pii.1_Silent_p.K37K	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	37	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		TGAATCAGAAAGGCAAGGTGA	0.403000													23	98					0	0	0	0
ZNF292	23036	broad.mit.edu	37	6	87969024	87969024	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:87969024C>T	uc003plm.3	+	8	5718	c.5677C>T	c.(5677-5679)CAA>TAA	p.Q1893*		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1893					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GATAAACATTCAATTTAATGA	0.353000													23	63					0	0	0	0
MCHR2	84539	broad.mit.edu	37	6	100368869	100368869	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:100368869C>A	uc003pqh.1	-	6	1285	c.970G>T	c.(970-972)GCG>TCG	p.A324S	MCHR2_uc003pqi.1_Missense_Mutation_p.A324S	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	324	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TTCTCAGTCGCTCTTCTTTGG	0.423000													45	190					1.86633e-21	2.12083e-21	1	0
TBPL1	9519	broad.mit.edu	37	6	134308158	134308158	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:134308158A>G	uc010kgg.2	+	7	1101	c.541A>G	c.(541-543)AGC>GGC	p.S181G	TBPL1_uc003qel.2_Missense_Mutation_p.S181G	NM_004865	NP_004856	P62380	TBPL1_HUMAN	TBP-like 1	181					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	cytoplasm	DNA binding|protein binding|transcription coactivator activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00591)|OV - Ovarian serous cystadenocarcinoma(155;0.00848)		TGTGTTTGAAAGCAGGAAAGA	0.398000													23	83					0	0	0	0
ESR1	2099	broad.mit.edu	37	6	152129446	152129446	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:152129446G>A	uc003qom.3	+	3	769	c.399G>A	c.(397-399)GAG>GAA	p.E133E	ESR1_uc010kin.2_Silent_p.E133E|ESR1_uc010kio.2_Silent_p.E133E|ESR1_uc010kip.2_Silent_p.E133E|ESR1_uc003qon.3_Silent_p.E133E|ESR1_uc003qoo.3_Silent_p.E133E|ESR1_uc010kiq.2_5'UTR|ESR1_uc010kir.2_Silent_p.E133E	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	133	Modulating; mediates interaction with MACROD1.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	ACTACCTGGAGAACGAGCCCA	0.532000													3	6					0	0	0	0
OGDH	4967	broad.mit.edu	37	7	44715628	44715628	+	Silent	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:44715628C>A	uc003tln.2	+	9	1195	c.1086C>A	c.(1084-1086)ACC>ACA	p.T362T	OGDH_uc003tlm.2_Silent_p.T362T|OGDH_uc011kbx.1_Silent_p.T358T|OGDH_uc011kby.1_Silent_p.T212T|OGDH_uc003tlp.2_Silent_p.T373T|OGDH_uc011kbz.1_Silent_p.T157T|OGDH_uc003tlo.1_Silent_p.T195T	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	362					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	ATCGTGTCACCGACAGGAACA	0.552000													165	135					2.19381e-74	2.61168e-74	1	0
TNS3	64759	broad.mit.edu	37	7	47385791	47385791	+	Silent	SNP	G	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:47385791G>C	uc003tnv.2	-	18	2812	c.2445C>G	c.(2443-2445)GTC>GTG	p.V815V	TNS3_uc003tnw.2_Silent_p.V815V	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	815						focal adhesion	protein binding			ovary(4)	4						ATACCTCTTTGACGTCCGCTG	0.592000													26	101					0	0	0	0
Unknown	0	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	A	A	rs137873032	by1000genomes	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:64530103G>A	uc003ttt.1	+	7		c.929G>A			uc010kzt.1_RNA|uc003ttu.1_5'Flank					Homo sapiens cDNA clone IMAGE:4215179, partial cds.																		TGACTGCTTGGGACATGCAGG	0.368000													3	87					0	0	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72338208	72338208	+	RNA	SNP	T	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:72338208T>G	uc010lal.1	-	1		c.1448A>C				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CAGCCATGCGTTGGAACAGGA	0.483000													72	209					0	0	0	0
C7orf68	29923	broad.mit.edu	37	7	128097493	128097493	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:128097493C>G	uc003vne.3	+	2	433	c.171C>G	c.(169-171)GAC>GAG	p.D57E	C7orf68_uc010lli.2_Missense_Mutation_p.D57E|C7orf68_uc010llj.1_Intron	NM_013332	NP_037464	Q9Y5L2	HIG2_HUMAN	hypoxia-inducible protein 2	57					autocrine signaling|positive regulation of cell proliferation|response to stress	cell surface|extracellular space|integral to membrane|stored secretory granule	receptor binding				0						GCCTTCCAGACCATCCATCCA	0.542000													22	78					0	0	0	0
SMO	6608	broad.mit.edu	37	7	128852282	128852282	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:128852282C>T	uc003vor.2	+	12	2634	c.2354C>T	c.(2353-2355)TCG>TTG	p.S785L	SMO_uc003vos.2_3'UTR	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	785	Cytoplasmic (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						GATGCAGACTCGGACTTCTGA	0.607000			Mis		skin basal cell 								26	102					0	0	0	0
PRSS1	5644	broad.mit.edu	37	7	142460802	142460802	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:142460802G>A	uc003wak.2	+	5	692	c.675G>A	c.(673-675)AAG>AAA	p.K225K	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Silent_p.K165K	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	225	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			AGAAGAACAAGCCTGGAGTCT	0.512000									Hereditary_Pancreatitis				9	202					0	0	0	0
NCAPG2	54892	broad.mit.edu	37	7	158454900	158454900	+	Silent	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:158454900G>A	uc003wnv.1	-	16	2120	c.1975C>T	c.(1975-1977)CTG>TTG	p.L659L	NCAPG2_uc010lqu.1_Silent_p.L451L|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Silent_p.L659L|NCAPG2_uc011kwe.1_Silent_p.L659L|NCAPG2_uc011kwc.1_Silent_p.L160L|NCAPG2_uc011kwd.1_Intron	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	659					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		AATACTTTCAGATACTCTGGA	0.313000													20	50					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77619978	77619978	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr8:77619978C>A	uc003yav.2	+	3	3097	c.2710C>A	c.(2710-2712)CTC>ATC	p.L904I	ZFHX4_uc003yat.1_Missense_Mutation_p.L904I|ZFHX4_uc003yau.1_Missense_Mutation_p.L930I|ZFHX4_uc003yaw.1_Missense_Mutation_p.L904I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	904						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGAGCGCTCTCTCCCTGAAGA	0.512000										HNSCC(33;0.089)			12	53					6.40141e-05	6.66814e-05	1	0
FAM164A	51101	broad.mit.edu	37	8	79598823	79598823	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr8:79598823C>T	uc003ybd.2	+	4	434	c.332C>T	c.(331-333)CCT>CTT	p.P111L		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	111										ovary(1)	1						CCTCCTCCTCCTCCACCTTCT	0.378000													13	50					0	0	0	0
FBXO43	286151	broad.mit.edu	37	8	101153460	101153460	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr8:101153460A>T	uc003yjd.2	-	2	1735	c.1022T>A	c.(1021-1023)TTG>TAG	p.L341*	FBXO43_uc003yje.2_Nonsense_Mutation_p.L307*|FBXO43_uc010mbp.1_Nonsense_Mutation_p.L341*	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	341					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			TGATTTCTCCAAGCTAAGTGA	0.428000													45	150					0	0	0	0
GLI4	2738	broad.mit.edu	37	8	144358773	144358773	+	Silent	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr8:144358773C>T	uc003yxx.2	+	4	1015	c.930C>T	c.(928-930)CTC>CTT	p.L310L	ZFP41_uc003yxv.2_RNA	NM_138465	NP_612474	P10075	GLI4_HUMAN	GLI-Kruppel family member GLI4	310	C2H2-type 5.					nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			GCTCCGTGCTCATCGAGCACC	0.667000													7	11					0	0	0	0
TXN	7295	broad.mit.edu	37	9	113013678	113013678	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr9:113013678G>A	uc004bep.1	-	2	152	c.89C>T	c.(88-90)ACG>ATG	p.T30M	TXN_uc004beq.1_Missense_Mutation_p.T30M	NM_003329	NP_003320	P10599	THIO_HUMAN	thioredoxin	30	Thioredoxin.				cell proliferation|cell-cell signaling|cellular component movement|electron transport chain|glycerol ether metabolic process|nucleobase, nucleoside and nucleotide interconversion|positive regulation of DNA binding|regulation of protein import into nucleus, translocation|response to radiation|signal transduction|transcription, DNA-dependent|transport	cytosol|extracellular region|nucleoplasm	electron carrier activity|protein binding|protein disulfide oxidoreductase activity				0				OV - Ovarian serous cystadenocarcinoma(323;7.36e-07)		CCCACACCACGTGGCTGAGAA	0.383000													16	45					0	0	0	0
SLC34A3	142680	broad.mit.edu	37	9	140128317	140128317	+	Silent	SNP	C	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr9:140128317C>A	uc004cmf.1	+	9	1035	c.849C>A	c.(847-849)ACC>ACA	p.T283T	SLC34A3_uc004cmc.1_Silent_p.T140T|SLC34A3_uc004cmd.1_Silent_p.T283T|SLC34A3_uc011met.1_Silent_p.T283T	NM_080877	NP_543153	Q8N130	NPT2C_HUMAN	solute carrier family 34 (sodium phosphate),	283	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|integral to membrane	sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CTCCCCAGACCCAGGAGAACA	0.687000													6	18					0.000274275	0.000283733	1	0
MAGEB3	4114	broad.mit.edu	37	X	30254048	30254048	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chrX:30254048C>T	uc004dca.1	+	5	744	c.7C>T	c.(7-9)CGG>TGG	p.R3W		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	3											0						CATCATGCCTCGGGGTCAGAA	0.562000													24	23					0	0	0	0
MED14	9282	broad.mit.edu	37	X	40571488	40571488	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chrX:40571488G>T	uc004dex.3	-	7	979	c.839C>A	c.(838-840)TCT>TAT	p.S280Y	MED14_uc010nhe.1_Missense_Mutation_p.S164Y	NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	280	Interaction with STAT2.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						AAAGAGCCTAGACTGCACCAG	0.408000													115	104					3.62976e-74	4.28711e-74	1	0
RAB9B	51209	broad.mit.edu	37	X	103080242	103080242	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chrX:103080242T>C	uc004ell.1	-	3	758	c.473A>G	c.(472-474)GAT>GGT	p.D158G	RAB9B_uc004eli.1_Intron	NM_016370	NP_057454	Q9NP90	RAB9B_HUMAN	RAB9B, member RAS oncogene family	158					Golgi to endosome transport|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|protein binding			lung(3)	3						CACATTAGTATCATCTTTGGC	0.473000													129	95					0	0	0	0
Unknown	0	broad.mit.edu	37	1	4235523	4235523	+	IGR	DEL	G	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:4235523delG								LOC100133612 (401646 upstream) : LOC284661 (236588 downstream)																							TTTTTTTTTTGCCCGTCTCAG	0.343													---	---	---							
ZNF684	127396	broad.mit.edu	37	1	40995229	40995230	+	5'Flank	DEL	AG	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:40995229_40995230delAG	uc001cft.1	+							NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			gaggggaggCAGAGAGAGAGAG	0.198													---	---	---							
ZNF644	84146	broad.mit.edu	37	1	91403466	91403473	+	Frame_Shift_Del	DEL	TTTTTCTT	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:91403466_91403473delTTTTTCTT	uc001dnw.2	-	4	3399_3406	c.3257_3264delAAGAAAAA	c.(3256-3264)GAAGAAAAAfs	p.E1086fs	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	1086_1088					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TTTTTTCATATTTTTCTTCATTTTGCAT	0.346													---	---	---							
Unknown	0	broad.mit.edu	37	1	207273434	207273439	+	IGR	DEL	TGTGTA	-	-	rs35665980		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:207273434_207273439delTGTGTA								C4BPB (99 upstream) : C4BPA (4072 downstream)																							tgtgtgtgtgtgtgtatgtgtgtgtg	0.257													---	---	---							
Unknown	0	broad.mit.edu	37	1	236261646	236261651	+	IGR	DEL	GGAAAA	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr1:236261646_236261651delGGAAAA								NID1 (33165 upstream) : GPR137B (44181 downstream)																							gaagggaaggggaaaagaagggaagg	0.000													---	---	---							
KIAA1217	56243	broad.mit.edu	37	10	24831690	24831691	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr10:24831690_24831691insT	uc001iru.3	+	18	4006_4007	c.3603_3604insT	c.(3601-3606)GAATTCfs	p.E1201fs	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Frame_Shift_Ins_p.E1165fs|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Frame_Shift_Ins_p.E884fs|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Frame_Shift_Ins_p.E884fs|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Frame_Shift_Ins_p.E37fs	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1201_1202					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CCCAAATGGAATTCCAAAAGGT	0.426													---	---	---							
MASTL	84930	broad.mit.edu	37	10	27459203	27459208	+	In_Frame_Del	DEL	GGGAAA	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr10:27459203_27459208delGGGAAA	uc001itm.2	+	8	1954_1959	c.1315_1320delGGGAAA	c.(1315-1320)GGGAAAdel	p.GK439del	MASTL_uc001itl.2_In_Frame_Del_p.GK439del|MASTL_uc009xkw.1_In_Frame_Del_p.GK439del|MASTL_uc009xkx.1_RNA	NM_032844	NP_116233	Q96GX5	GWL_HUMAN	microtubule associated serine/threonine	439_440	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|mitosis|negative regulation of protein phosphatase type 2A activity|regulation of cell cycle|response to DNA damage stimulus	centrosome|cleavage furrow|nucleus	ATP binding|protein phosphatase 2A binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						AGAGCACCTTGGGAAAAGAAGTTTAA	0.340													---	---	---							
CCDC83	220047	broad.mit.edu	37	11	85627150	85627150	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr11:85627150delT	uc001pbh.1	+	10	1466	c.954delT	c.(952-954)CATfs	p.H318fs	CCDC83_uc001pbg.1_Frame_Shift_Del_p.H349fs|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Frame_Shift_Del_p.H218fs	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	318										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CTATCTTACATCTTAGTCATG	0.383													---	---	---							
Unknown	0	broad.mit.edu	37	13	70793951	70793952	+	IGR	DEL	GT	-	-	rs3073512		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr13:70793951_70793952delGT								ATXN8OS (80066 upstream) : None (None downstream)																							AAACTTGAAAgtgtgtgtgtgt	0.238													---	---	---							
Unknown	0	broad.mit.edu	37	14	85354759	85354760	+	IGR	INS	-	TTCCTTCC	TTCCTTCC	rs117297188	by1000genomes	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr14:85354759_85354760insTTCCTTCC								None (None upstream) : FLRT2 (641728 downstream)																							CTTTTCGTTCTttccttccttc	0.035													---	---	---							
Unknown	0	broad.mit.edu	37	15	75035636	75035639	+	IGR	DEL	GAGG	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr15:75035636_75035639delGAGG								CYP1A1 (17759 upstream) : CYP1A2 (5545 downstream)																							aagaaagaaagagggagggaggga	0.000													---	---	---							
LIG3	3980	broad.mit.edu	37	17	33331461	33331462	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr17:33331461_33331462insGC	uc002hik.1	+	20	3074_3075	c.2966_2967insGC	c.(2965-2967)CAGfs	p.Q989fs	uc002hil.2_5'Flank	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	989	BRCT.				base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CCTGCGGCCCAGCAGGTCTCCC	0.569								Other_BER_factors					---	---	---							
PTRH2	51651	broad.mit.edu	37	17	57775075	57775076	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr17:57775075_57775076insA	uc002ixt.2	-	2	389_390	c.264_265insT	c.(262-267)CATGCTfs	p.H88fs	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	88_89					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GAAACAGCAGCATGAGAGCACT	0.475													---	---	---							
Unknown	0	broad.mit.edu	37	18	65042307	65042307	+	IGR	DEL	T	-	-	rs75002100		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr18:65042307delT								CDH19 (771091 upstream) : DSEL (131512 downstream)																							gtcttcttcattttttttttt	0.184													---	---	---							
Unknown	0	broad.mit.edu	37	2	146785954	146785955	+	IGR	INS	-	G	G	rs139149122	by1000genomes	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:146785954_146785955insG								None (None upstream) : PABPC1P2 (558670 downstream)																							aaaaaaaagaagaaggaaggaa	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	2	203233287	203233290	+	IGR	DEL	TCCC	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr2:203233287_203233290delTCCC								NOP58 (64905 upstream) : BMPR2 (7760 downstream)																							cttccttccttccctccctccctc	0.000													---	---	---							
SLC2A4RG	56731	broad.mit.edu	37	20	62372799	62372801	+	In_Frame_Del	DEL	CTT	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr20:62372799_62372801delCTT	uc002ygq.2	+	3	413_415	c.358_360delCTT	c.(358-360)CTTdel	p.L121del	SLC2A4RG_uc002ygr.2_In_Frame_Del_p.L16del|SLC2A4RG_uc011abj.1_In_Frame_Del_p.L16del|SLC2A4RG_uc002ygs.2_5'UTR|SLC2A4RG_uc002ygt.2_5'Flank	NM_020062	NP_064446	Q9NR83	S2A4R_HUMAN	SLC2A4 regulator	121				SPLLL -> KPSPS (in Ref. 1; AAF97516).		cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					CAGCCCTCTCCTTCTGGGGGCCC	0.650													---	---	---							
Unknown	0	broad.mit.edu	37	21	44756755	44756755	+	IGR	DEL	A	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr21:44756755delA								CRYAA (163842 upstream) : SIK1 (77643 downstream)																							caccatcaccaccaccatcac	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	3	74151808	74151808	+	IGR	DEL	A	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr3:74151808delA								PDZRN3 (477736 upstream) : CNTN3 (159914 downstream)																							GGAATGTTATAAGAAATTCCA	0.433													---	---	---							
Unknown	0	broad.mit.edu	37	5	171749435	171749436	+	IGR	INS	-	TTCC	TTCC	rs113959773		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr5:171749435_171749436insTTCC								UBTD2 (38640 upstream) : SH3PXD2B (11069 downstream)																							tcctccttcctttccttccttc	0.059													---	---	---							
Unknown	0	broad.mit.edu	37	6	32210220	32210227	+	IGR	DEL	TTCTTTCC	-	-	rs41286494		TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr6:32210220_32210227delTTCTTTCC								NOTCH4 (18376 upstream) : C6orf10 (46076 downstream)																							CTTTCTttctttctttccttccttcctt	0.216													---	---	---							
PNPLA8	50640	broad.mit.edu	37	7	108112931	108112935	+	Frame_Shift_Del	DEL	CTTGA	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr7:108112931_108112935delCTTGA	uc003vff.1	-	12	2666_2670	c.2259_2263delTCAAG	c.(2257-2265)AGTCAAGAAfs	p.S753fs	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Frame_Shift_Del_p.S753fs|PNPLA8_uc003vfi.1_Frame_Shift_Del_p.S653fs|PNPLA8_uc003vfj.1_Frame_Shift_Del_p.S753fs|PNPLA8_uc003vfk.1_Frame_Shift_Del_p.S653fs	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	753_755					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						GTTGTTTTTTCTTGACTTAATATTT	0.288													---	---	---							
Unknown	0	broad.mit.edu	37	8	30181786	30181789	+	IGR	DEL	AAGA	-	-			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr8:30181786_30181789delAAGA								DCTN6 (140727 upstream) : RBPMS (60155 downstream)																							ggaaggaaggaagaaagaaagaaa	0.083													---	---	---							
Unknown	0	broad.mit.edu	37	9	92908434	92908435	+	IGR	INS	-	TTCC	TTCC	rs150254540	by1000genomes	TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chr9:92908434_92908435insTTCC								LOC100129066 (573760 upstream) : DIRAS2 (463679 downstream)																							attttgtatgattccttccttc	0.000													---	---	---							
FLNA	2316	broad.mit.edu	37	X	153599568	153599569	+	Frame_Shift_Ins	INS	-	CG	CG			TCGA-CN-5361-01A-01D-1434-08	TCGA-CN-5361-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5eea0205-e539-48de-b94c-4bb68c74ec96	27a64fa5-cf94-4e91-b746-7ea70c6d3264	g.chrX:153599568_153599569insCG	uc004fkk.2	-	2	294_295	c.45_46insCG	c.(43-48)GCGGCTfs	p.A15fs	FLNA_uc010nuu.1_Frame_Shift_Ins_p.A15fs	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	15_16	Actin-binding.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCGCCCGGAGCCGCGCCTGCTG	0.718													---	---	---							
