Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
ZZZ3	26009	broad.mit.edu	37	1	78099026	78099026	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:78099026C>T	uc001dhq.2	-	5	490	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	ZZZ3_uc001dhr.2_Intron|ZZZ3_uc009wbz.1_Missense_Mutation_p.R5Q|ZZZ3_uc001dhp.2_Missense_Mutation_p.R5Q	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						ACGAGTAGATCGGGAAGCAGC	0.403000													4	28					0	0	0	0
PTBP2	58155	broad.mit.edu	37	1	97272478	97272478	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:97272478C>T	uc001drq.2	+	11	1381	c.1135C>T	c.(1135-1137)CTA>TTA	p.L379L	PTBP2_uc001drn.2_Silent_p.L384L|PTBP2_uc001dro.2_Silent_p.L379L|PTBP2_uc010otz.1_Silent_p.L395L|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Silent_p.L327L|PTBP2_uc001drr.2_Silent_p.L384L|PTBP2_uc010oua.1_Silent_p.L387L|PTBP2_uc001dru.2_RNA|PTBP2_uc001drs.1_5'UTR|PTBP2_uc001drt.2_5'UTR	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	379	RRM 3.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		AGACAGCGCTCTAATACAGAT	0.348000													4	52					0	0	0	0
OLFM3	118427	broad.mit.edu	37	1	102270200	102270200	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:102270200A>G	uc001duf.2	-	6	1102	c.1031T>C	c.(1030-1032)TTC>TCC	p.F344S	OLFM3_uc001dug.2_Missense_Mutation_p.F324S|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Missense_Mutation_p.F249S|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	344	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		GATGTCAGAGAATCCACCCCA	0.453000													13	37					0	0	0	0
CELSR2	1952	broad.mit.edu	37	1	109812137	109812137	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:109812137G>T	uc001dxa.3	+	21	6965	c.6904G>T	c.(6904-6906)GTC>TTC	p.V2302F		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2302	Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GGACAAACCCGTCACGGTGCA	0.607000													8	32					0.000157383	0.000176813	1	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244000													4	57					0	0	0	0
LY9	4063	broad.mit.edu	37	1	160769743	160769743	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:160769743A>T	uc001fwu.2	+	2	375	c.325A>T	c.(325-327)ATC>TTC	p.I109F	LY9_uc001fwt.2_Missense_Mutation_p.I109F|LY9_uc010pjs.1_Missense_Mutation_p.I109F|LY9_uc001fwv.2_Missense_Mutation_p.I109F|LY9_uc001fww.2_Missense_Mutation_p.I109F|LY9_uc001fwx.2_Missense_Mutation_p.I109F|LY9_uc001fwy.1_Missense_Mutation_p.I11F	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	109	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCGACTAGACATCACCAAGTG	0.453000													21	74					0	0	0	0
TNN	63923	broad.mit.edu	37	1	175046803	175046803	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:175046803C>T	uc001gkl.1	+	2	362	c.249C>T	c.(247-249)AAC>AAT	p.N83N	TNN_uc010pmx.1_Silent_p.N83N	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	83					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGGAACAGAACATCATCTTCA	0.617000													17	50					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215940123	215940123	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:215940123C>G	uc001hku.1	-	56	11334	c.10947G>C	c.(10945-10947)CAG>CAC	p.Q3649H		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3649	Extracellular (Potential).|Fibronectin type-III 21.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGTGTATGGCTGGAGACCTA	0.423000										HNSCC(13;0.011)			11	50					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216373318	216373318	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:216373318T>A	uc001hku.1	-	17	3849	c.3462A>T	c.(3460-3462)TTA>TTT	p.L1154F	USH2A_uc001hkv.2_Missense_Mutation_p.L1154F	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1154	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGATATAACTTAAAGTCAAGT	0.423000										HNSCC(13;0.011)			16	95					0	0	0	0
PGBD3	267004	broad.mit.edu	37	10	50724315	50724315	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr10:50724315G>A	uc001jht.2	-	2	1101	c.846C>T	c.(844-846)TGC>TGT	p.C282C	ERCC6_uc001jhs.3_Intron|PGBD3_uc009xoe.2_Silent_p.C750C|PGBD3_uc001jhu.2_Silent_p.C750C	NM_170753	NP_736609	Q8N328	PGBD3_HUMAN	hypothetical protein LOC267004	282										pancreas(1)|breast(1)|skin(1)	3						TAAATTGTTTGCACCCGTGAC	0.413000													7	30					0	0	0	0
LOC650623	650623	broad.mit.edu	37	10	81444997	81444997	+	RNA	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr10:81444997T>C	uc010qlu.1	+	1		c.2267T>C				NR_027512				Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA.												0						ACAACAATTTTCGGGCTTGCA	0.612000													2	5					0	0	0	0
DNMBP	23268	broad.mit.edu	37	10	101731794	101731794	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr10:101731794C>T	uc001kqj.2	-	2	180	c.88G>A	c.(88-90)GAG>AAG	p.E30K		NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	30	SH3 1.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GCCAGCACCTCAATAATATCT	0.468000													32	103					0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1263968	1263968	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr11:1263968C>T	uc009ycr.1	+	47	8063	c.7937C>T	c.(7936-7938)GCC>GTC	p.A2646V	MUC5B_uc001ltb.2_Missense_Mutation_p.A1956V	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1953	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGCTCCAAAGCCACTCCCTCC	0.632000													25	94					0	0	0	0
C11orf53	341032	broad.mit.edu	37	11	111156591	111156591	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr11:111156591G>A	uc001plc.2	+	4	670	c.523G>A	c.(523-525)GGG>AGG	p.G175R		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	175											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CCACACTCCGGGGTACCCTAC	0.622000													24	103					0	0	0	0
FAM55A	120400	broad.mit.edu	37	11	114393075	114393075	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr11:114393075G>C	uc001ppa.2	-	6	1250	c.833C>G	c.(832-834)CCT>CGT	p.P278R	FAM55A_uc010rxd.1_Missense_Mutation_p.P127R	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	420						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		AATTTCCCGAGGGATATAATC	0.433000													23	92					0	0	0	0
ANO2	57101	broad.mit.edu	37	12	5908715	5908715	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:5908715C>T	uc001qnm.2	-	10	1073	c.1001G>A	c.(1000-1002)CGC>CAC	p.R334H		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	339	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity	p.R335H(1)		ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CACTCCATAGCGCGCCCATTC	0.418000													4	32					0	0	0	0
CD163L1	283316	broad.mit.edu	37	12	7527960	7527960	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:7527960T>A	uc001qsy.2	-	11	2944	c.2918A>T	c.(2917-2919)GAG>GTG	p.E973V	CD163L1_uc010sge.1_Missense_Mutation_p.E983V	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	973	SRCR 9.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CAGAAGTGACTCATTCCCTAA	0.458000													10	45					0	0	0	0
RACGAP1	29127	broad.mit.edu	37	12	50386143	50386143	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:50386143T>G	uc001rvt.2	-	16	1773	c.1463A>C	c.(1462-1464)CAT>CCT	p.H488P	RACGAP1_uc009zlm.1_Missense_Mutation_p.H488P|RACGAP1_uc001rvs.2_Missense_Mutation_p.H488P|RACGAP1_uc001rvu.2_Missense_Mutation_p.H488P	NM_013277	NP_037409	Q9H0H5	RGAP1_HUMAN	Rac GTPase activating protein 1	488	Rho-GAP.				blood coagulation|cytokinesis, actomyosin contractile ring assembly|cytokinesis, initiation of separation|embryo development|microtubule-based movement|neuroblast proliferation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|spermatogenesis|sulfate transport	acrosomal vesicle|cytosol|microtubule|midbody|nucleus|spindle	alpha-tubulin binding|beta-tubulin binding|gamma-tubulin binding|GTPase activator activity|metal ion binding			kidney(1)	1						CATTTTAGTATGTGGACTCTG	0.393000													8	46					0	0	0	0
APAF1	317	broad.mit.edu	37	12	99065373	99065373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:99065373C>T	uc001tfz.2	+	12	2246	c.1669C>T	c.(1669-1671)CGA>TGA	p.R557*	APAF1_uc001tfy.2_Nonsense_Mutation_p.R546*|APAF1_uc001tga.2_Nonsense_Mutation_p.R546*|APAF1_uc001tgb.2_Nonsense_Mutation_p.R557*|APAF1_uc001tgc.2_Intron|APAF1_uc009zto.2_Translation_Start_Site	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	557					activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	CCTTCTTGGACGACAGCCATT	0.413000													10	110					0	0	0	0
MED13L	23389	broad.mit.edu	37	12	116445306	116445306	+	Silent	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:116445306A>G	uc001tvw.2	-	11	2203	c.2148T>C	c.(2146-2148)TAT>TAC	p.Y716Y		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	716					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CTTCAAAGGTATATGGGTCAT	0.433000													23	135					0	0	0	0
RPLP0	6175	broad.mit.edu	37	12	120634606	120634606	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:120634606G>A	uc001txp.2	-	8	1161	c.924C>T	c.(922-924)GAC>GAT	p.D308D	GCN1L1_uc001txo.2_5'Flank|RPLP0_uc001txq.2_Silent_p.D308D|RPLP0_uc001txr.2_Silent_p.D246D	NM_053275	NP_444505	P05388	RLA0_HUMAN	ribosomal protein P0	308					endocrine pancreas development|interspecies interaction between organisms|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleus	protein binding|RNA binding|structural constituent of ribosome			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCATATCCTCGTCCGACTCCT	0.313000													10	50					0	0	0	0
DNAH10	196385	broad.mit.edu	37	12	124341683	124341683	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:124341683G>T	uc001uft.3	+	36	6190	c.6165G>T	c.(6163-6165)TTG>TTT	p.L2055F		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2055					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCCTTGGTTTGATTTCGGATC	0.532000													6	54					0.00307968	0.00329707	1	0
LATS2	26524	broad.mit.edu	37	13	21562740	21562740	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr13:21562740G>A	uc009zzs.2	-	4	1544	c.1179C>T	c.(1177-1179)CAC>CAT	p.H393H	LATS2_uc001unr.3_Silent_p.H393H	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	393					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		GGAAGGCCACGTGCGCGCGCG	0.736000													3	7					0	0	0	0
NEK5	341676	broad.mit.edu	37	13	52682493	52682493	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr13:52682493G>T	uc001vge.2	-	8	655	c.515C>A	c.(514-516)TCC>TAC	p.S172Y	NEK5_uc001vgf.2_Missense_Mutation_p.S172Y	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	172	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GATCTCTGGGGACAGGTAGTA	0.338000													24	53					1.5548e-18	2.05053e-18	1	0
GZMH	2999	broad.mit.edu	37	14	25076508	25076508	+	Silent	SNP	A	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr14:25076508A>C	uc001wpr.1	-	4	489	c.444T>G	c.(442-444)GGT>GGG	p.G148G	GZMH_uc010aly.1_Intron|GZMH_uc010alz.1_Intron	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	148	Peptidase S1.				apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		TTGAGACATAACCCCAGCCAG	0.557000													10	65					0	0	0	0
FOXG1	2290	broad.mit.edu	37	14	29237527	29237527	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr14:29237527A>C	uc001wqe.2	+	1	1241	c.1042A>C	c.(1042-1044)AAC>CAC	p.N348H		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	348					axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GTTGACTCAGAACTCGCTGGG	0.657000													18	117					0	0	0	0
ARHGAP5	394	broad.mit.edu	37	14	32586346	32586346	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr14:32586346C>T	uc001wrl.2	+	3	3957	c.3718C>T	c.(3718-3720)CAG>TAG	p.Q1240*	ARHGAP5_uc001wrm.2_Intron|ARHGAP5_uc001wrn.2_Nonsense_Mutation_p.Q1240*|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	1240	Lys-rich.				cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		TTTCTTATAGCAGAAAAAGAA	0.323000													9	38					0	0	0	0
FERMT2	10979	broad.mit.edu	37	14	53345312	53345312	+	Silent	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr14:53345312A>G	uc001xad.2	-	7	1006	c.951T>C	c.(949-951)TTT>TTC	p.F317F	FERMT2_uc001xac.2_Silent_p.F317F|FERMT2_uc001xae.2_Silent_p.F317F|FERMT2_uc001xaf.2_Silent_p.F317F	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	317	FERM.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					GCAGGGCTGCAAACATCATCA	0.413000													26	80					0	0	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938448	30938448	+	RNA	SNP	A	G	G	rs146574312	by1000genomes	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr15:30938448A>G	uc010azv.1	+	11		c.1258A>G			ARHGAP11B_uc001zeu.2_RNA			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		CTATTTGTGCATGGTGGCTGG	0.483000													3	23					0	0	0	0
RPAP1	26015	broad.mit.edu	37	15	41819777	41819777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr15:41819777C>T	uc001zod.2	-	12	1579	c.1455G>A	c.(1453-1455)TGG>TGA	p.W485*		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	485						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTCCATGGTACCAAGAGAAGG	0.552000													3	19					0	0	0	0
SPG11	80208	broad.mit.edu	37	15	44900683	44900683	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr15:44900683T>C	uc001ztx.2	-	19	3443	c.3412A>G	c.(3412-3414)AGT>GGT	p.S1138G	SPG11_uc010ueh.1_Missense_Mutation_p.S1138G|SPG11_uc010uei.1_Missense_Mutation_p.S1138G	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1138	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		GGCAGGACACTAGGAGGAGTG	0.368000													12	54					0	0	0	0
GLDN	342035	broad.mit.edu	37	15	51696913	51696913	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr15:51696913T>C	uc002aba.2	+	10	1787	c.1618T>C	c.(1618-1620)TAT>CAT	p.Y540H	GLDN_uc002abb.2_Missense_Mutation_p.Y416H	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	540	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		TTTAATGCTTTATCCTGTGCA	0.413000													19	99					0	0	0	0
RASGRF1	5923	broad.mit.edu	37	15	79350798	79350798	+	Missense_Mutation	SNP	C	T	T	rs150686548		TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr15:79350798C>T	uc002beq.2	-	3	784	c.409G>A	c.(409-411)GAG>AAG	p.E137K	RASGRF1_uc002bep.2_Missense_Mutation_p.E137K|RASGRF1_uc010blm.1_Missense_Mutation_p.E59K|RASGRF1_uc002ber.3_Missense_Mutation_p.E137K	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	137					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						ATTAATGCCTCATGCTCTGTG	0.572000													5	45					0	0	0	0
CLDN6	9074	broad.mit.edu	37	16	3065430	3065430	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr16:3065430G>A	uc002csu.3	-	2	653	c.593C>T	c.(592-594)GCC>GTC	p.A198V		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	198	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGAGTAGCGGGCCATGTAATG	0.652000													13	60					0	0	0	0
TEKT5	146279	broad.mit.edu	37	16	10788235	10788235	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr16:10788235T>C	uc002czz.1	-	1	568	c.496A>G	c.(496-498)AAC>GAC	p.N166D		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	166	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						AAGTTCTGGTTCTCAGTCAGA	0.607000													49	249					0	0	0	0
ZNF646	9726	broad.mit.edu	37	16	31087784	31087784	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr16:31087784C>G	uc002eap.2	+	2	428	c.139C>G	c.(139-141)CCC>GCC	p.P47A	ZNF668_uc002eao.2_5'Flank	NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	47					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CATCCCTCGGCCCTACCGTTG	0.632000													13	81					0	0	0	0
ZNF646	9726	broad.mit.edu	37	16	31087829	31087829	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr16:31087829A>G	uc002eap.2	+	2	473	c.184A>G	c.(184-186)AGC>GGC	p.S62G	ZNF668_uc002eao.2_5'Flank	NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	62	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						TCACCCCGGGAGCCTGGTTAA	0.602000													13	61					0	0	0	0
DUS2L	54920	broad.mit.edu	37	16	68112759	68112759	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr16:68112759G>A	uc002evi.2	+	17	1501	c.1352G>A	c.(1351-1353)CGA>CAA	p.R451Q	DUS2L_uc002evj.2_Missense_Mutation_p.R451Q|DUS2L_uc010vkk.1_Missense_Mutation_p.R416Q|DUS2L_uc010cez.2_Missense_Mutation_p.R364Q	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	451					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		TTGCACAAGCGAAAGAGGGAG	0.627000													13	57					0	0	0	0
OR3A4	390756	broad.mit.edu	37	17	3214151	3214151	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:3214151G>C	uc002fvi.2	+	1	613	c.547G>C	c.(547-549)GAC>CAC	p.D183H		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						CTTCTACTGTGACCTCCCACA	0.517000													24	96					0	0	0	0
NUP88	4927	broad.mit.edu	37	17	5290432	5290432	+	Splice_Site	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:5290432T>C	uc002gbo.1	-	15	1943	c.1917_splice	c.e15-1	p.R639_splice	NUP88_uc002gbn.2_5'Flank|NUP88_uc010vsx.1_Splice_Site_p.R655_splice	NM_002532	NP_002523	Q99567	NUP88_HUMAN	nucleoporin 88kDa						carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	transporter activity			kidney(1)	1						TTTTTCATCCTTTAGAAAAGG	0.373000													11	29					0	0	0	0
CHRNB1	1140	broad.mit.edu	37	17	7350422	7350422	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:7350422C>T	uc002ghb.2	+	5	455	c.414C>T	c.(412-414)TCC>TCT	p.S138S	CHRNB1_uc010vty.1_Silent_p.S66S|CHRNB1_uc010vtz.1_5'UTR	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	138	Extracellular (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				CCGACGGCTCCGTGCGTTGGC	0.527000													9	37					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7574034	7574034	+	Splice_Site	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:7574034C>A	uc002gim.2	-	10	1188	c.994_splice	c.e10-1	p.I332_splice	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_Splice_Site|TP53_uc010cng.1_Splice_Site|TP53_uc002gii.1_Splice_Site_p.I200_splice|TP53_uc010cnh.1_Splice_Site|TP53_uc010cni.1_Splice_Site|TP53_uc002gij.2_Splice_Site_p.I332_splice	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a						activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.?(4)|p.I332fs*49(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCCACGGATCTGCAGCAACA	0.403000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			5	15					0.000602214	0.000660259	1	0
MYH2	4620	broad.mit.edu	37	17	10432731	10432731	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:10432731T>A	uc010coi.2	-	25	3313	c.3185A>T	c.(3184-3186)GAG>GTG	p.E1062V	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1062V|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1062	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAAGTCACCCTCAAGTTTCCT	0.373000													8	62					0	0	0	0
NF1	4763	broad.mit.edu	37	17	29548868	29548868	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:29548868G>T	uc002hgg.2	+	15	1975	c.1642G>T	c.(1642-1644)GCT>TCT	p.A548S	NF1_uc002hgf.1_Missense_Mutation_p.A548S|NF1_uc002hgh.2_Missense_Mutation_p.A548S|NF1_uc010csn.1_Missense_Mutation_p.A408S	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	548					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AAAAATTCAGGCTCTGCTGGT	0.313000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			4	40					0.00909568	0.00945951	1	0
WNK4	65266	broad.mit.edu	37	17	40940808	40940808	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:40940808C>A	uc002ibj.2	+	11	2171	c.2150C>A	c.(2149-2151)GCT>GAT	p.A717D	WNK4_uc010wgx.1_Missense_Mutation_p.A381D|WNK4_uc002ibk.1_Missense_Mutation_p.A489D|WNK4_uc010wgy.1_Missense_Mutation_p.A61D	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	717					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GAGATTGCAGCTGCCATGGTG	0.537000													11	51					0.000151284	0.000171017	1	0
MYCBPAP	84073	broad.mit.edu	37	17	48602250	48602250	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:48602250G>T	uc010wmr.1	+	13	1939	c.1777G>T	c.(1777-1779)GCC>TCC	p.A593S	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	556					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CAAGCTGACTGCCCATGAGGC	0.582000													19	80					5.03518e-11	6.27674e-11	1	0
ABCA6	23460	broad.mit.edu	37	17	67094145	67094145	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:67094145C>T	uc002jhw.1	-	23	3211	c.3036G>A	c.(3034-3036)GGG>GGA	p.G1012G		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1012	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CATCCGGCAACCCAGTCCAGA	0.368000													6	27					0	0	0	0
ABCA6	23460	broad.mit.edu	37	17	67111520	67111520	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:67111520C>A	uc002jhw.1	-	12	1778	c.1603G>T	c.(1603-1605)GAA>TAA	p.E535*	ABCA6_uc002jhx.1_5'UTR	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	535	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TACTCACCTTCTGTTGGAACA	0.358000													16	85					1.02788e-11	1.29017e-11	1	0
DNAH17	8632	broad.mit.edu	37	17	76540009	76540009	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:76540009C>A	uc002jvv.1	-	13	1674	c.1568G>T	c.(1567-1569)AGA>ATA	p.R523I						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GTTGGCAATTCTTCCATCCAA	0.498000													29	175					6.38683e-12	8.07225e-12	1	0
RNF213	57674	broad.mit.edu	37	17	78318661	78318661	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr17:78318661C>A	uc002jyh.1	+	4	968	c.745C>A	c.(745-747)CAA>AAA	p.Q249K		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			ACGATTCAATCAAAACCAAGA	0.493000													16	53					6.94344e-10	8.59664e-10	1	0
EPB41L3	23136	broad.mit.edu	37	18	5419778	5419778	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr18:5419778C>T	uc002kmt.1	-	12	1524	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K	EPB41L3_uc010wzh.1_Missense_Mutation_p.E498K|EPB41L3_uc002kmu.1_Missense_Mutation_p.E498K|EPB41L3_uc010dkq.1_Missense_Mutation_p.E389K|EPB41L3_uc002kms.1_5'UTR|EPB41L3_uc010wze.1_5'UTR|EPB41L3_uc010wzf.1_5'UTR|EPB41L3_uc010wzg.1_5'UTR|EPB41L3_uc010dkr.2_Missense_Mutation_p.E59K	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	480	Hydrophilic.				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						tcctcttcctcgtcccgctcc	0.388000													9	46					0	0	0	0
ATP9B	374868	broad.mit.edu	37	18	76873335	76873335	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr18:76873335A>G	uc002lmx.2	+	4	553	c.539A>G	c.(538-540)TAC>TGC	p.Y180C	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.Y180C|ATP9B_uc002lmy.1_RNA|ATP9B_uc002lmz.1_5'UTR|ATP9B_uc002lmu.2_Missense_Mutation_p.Y180C	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	180	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		GGCTATCTCTACACCTACTGG	0.289000													6	39					0	0	0	0
RPL36	25873	broad.mit.edu	37	19	5691434	5691434	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:5691434C>A	uc002mcv.2	+	3	267	c.198C>A	c.(196-198)GAC>GAA	p.D66E	RPL36_uc002mcw.2_Missense_Mutation_p.D66E	NM_033643	NP_378669	Q9Y3U8	RL36_HUMAN	ribosomal protein L36	66					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|structural constituent of ribosome				0						TCTCCAAGGACAAACGGGCCC	0.627000											OREG0025183	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	77					0.00185496	0.00200954	1	0
TMEM205	374882	broad.mit.edu	37	19	11456289	11456289	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:11456289C>T	uc002mrb.2	-	2	195	c.7G>A	c.(7-9)GAA>AAA	p.E3K	TMEM205_uc002mra.2_Missense_Mutation_p.E3K|TMEM205_uc002mqz.2_Missense_Mutation_p.E3K|TMEM205_uc002mrc.2_Missense_Mutation_p.E3K|CCDC159_uc010xlr.1_5'Flank|CCDC159_uc010xls.1_5'Flank|CCDC159_uc010xlt.1_5'Flank|CCDC159_uc010xlu.1_5'Flank|CCDC159_uc010xlv.1_5'Flank	NM_001145416	NP_001138888	Q6UW68	TM205_HUMAN	transmembrane protein 205	3						integral to membrane					0						TTCCCGCCTTCCTCCATCTTG	0.587000													3	31					0	0	0	0
ZNF136	7695	broad.mit.edu	37	19	12297983	12297983	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:12297983C>T	uc002mti.2	+	4	890	c.790C>T	c.(790-792)CTG>TTG	p.L264L	ZNF136_uc010xmh.1_Silent_p.L198L	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	264	C2H2-type 5.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						CTTTCATTCTCTGAGTTCATT	0.388000													24	47					0	0	0	0
UPF1	5976	broad.mit.edu	37	19	18966828	18966828	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:18966828A>G	uc002nkg.2	+	12	1947	c.1672A>G	c.(1672-1674)AAG>GAG	p.K558E	UPF1_uc002nkf.2_Missense_Mutation_p.K547E	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	558					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCTCTGCGCCAAGAGCCGTGA	0.612000													5	18					0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19338426	19338426	+	Missense_Mutation	SNP	C	T	T	rs111534277	byFrequency	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:19338426C>T	uc002nlz.2	+	8	2096	c.1997C>T	c.(1996-1998)ACG>ATG	p.T666M	NCAN_uc010ecc.1_Missense_Mutation_p.T230M	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	666					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GCCACCGCCACGGCTCCACCC	0.612000													20	108					0	0	0	0
ZNF91	7644	broad.mit.edu	37	19	23544891	23544891	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:23544891T>A	uc002nre.2	-	4	1003	c.890A>T	c.(889-891)GAA>GTA	p.E297V	ZNF91_uc010xrj.1_Missense_Mutation_p.E265V	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	297	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GCCACATTCTTCACATTTGTA	0.393000													18	86					0	0	0	0
ATP4A	495	broad.mit.edu	37	19	36051747	36051747	+	Missense_Mutation	SNP	C	T	T	rs148572774	byFrequency	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:36051747C>T	uc002oal.1	-	5	537	c.508G>A	c.(508-510)GCC>ACC	p.A170T	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	170	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	TTAAAGCTGGCGATGATGTTG	0.562000													13	95					0	0	0	0
IRGC	56269	broad.mit.edu	37	19	44222644	44222644	+	Splice_Site	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:44222644G>A	uc002oxh.2	+	2	82	c.-65_splice	c.e2-1			NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema							membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CTCCTCTGCAGGCGCTGAGGA	0.627000													20	64					0	0	0	0
BCL3	602	broad.mit.edu	37	19	45262845	45262845	+	Silent	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:45262845C>A	uc010xxe.1	+	9	1408	c.1338C>A	c.(1336-1338)CCC>CCA	p.P446P		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	446	Pro/Ser-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				GGCCGGTGCCCCCCTCCCCAG	0.667000			T	IGH@	CLL 								19	60					2.94398e-08	3.59601e-08	1	0
ZNF415	55786	broad.mit.edu	37	19	53611805	53611805	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:53611805C>A	uc002qax.2	-	7	1986	c.1637G>T	c.(1636-1638)TGT>TTT	p.C546F	ZNF415_uc002qat.2_Missense_Mutation_p.C510F|ZNF415_uc002qaw.2_Missense_Mutation_p.C498F|ZNF415_uc010yds.1_Missense_Mutation_p.C498F|ZNF415_uc010ydt.1_Missense_Mutation_p.C498F|ZNF415_uc002qau.2_Missense_Mutation_p.C485F|ZNF415_uc002qav.2_Missense_Mutation_p.C510F|ZNF415_uc002qba.2_Missense_Mutation_p.C268F|ZNF415_uc002qay.2_Missense_Mutation_p.C485F|ZNF415_uc002qaz.2_Missense_Mutation_p.C546F	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	546	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		ACACTCATTACATTTGTAAGG	0.413000													25	161					4.87955e-14	6.25408e-14	1	0
LILRA1	11024	broad.mit.edu	37	19	55106221	55106221	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:55106221G>A	uc002qgh.1	+	4	344	c.162G>A	c.(160-162)GAG>GAA	p.E54E	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.E54E	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	54	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GGATCCTGGAGACCCAGGAGT	0.582000													15	85					0	0	0	0
APOB	338	broad.mit.edu	37	2	21255246	21255246	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:21255246C>T	uc002red.2	-	10	1460	c.1332G>A	c.(1330-1332)GCG>GCA	p.A444A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	444	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CGTGGCTCAGCGCATACAAGG	0.547000													4	75					0	0	0	0
DNMT3A	1788	broad.mit.edu	37	2	25463264	25463264	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:25463264G>A	uc002rgc.2	-	19	2486	c.2229C>T	c.(2227-2229)CCC>CCT	p.P743P	DNMT3A_uc002rgd.2_Silent_p.P743P|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Silent_p.P554P	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	743					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCCCTCCTTGGGCCGCGCAT	0.567000			Mis|F|N|S		AML								22	85					0	0	0	0
SMEK2	57223	broad.mit.edu	37	2	55808822	55808822	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:55808822T>A	uc002rzc.2	-	8	1621	c.1246A>T	c.(1246-1248)ATT>TTT	p.I416F	SMEK2_uc002rzb.2_Missense_Mutation_p.I416F|SMEK2_uc002rzd.2_Missense_Mutation_p.I416F|SMEK2_uc002rza.2_Missense_Mutation_p.I292F	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	416						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			ACCACATTAATAAGAAGAATA	0.348000													12	48					0	0	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459975	107459975	+	Silent	SNP	G	A	A	rs142520495		TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:107459975G>A	uc002tdq.2	-	2	578	c.459C>T	c.(457-459)CCC>CCT	p.P153P	ST6GAL2_uc002tdr.2_Silent_p.P153P|ST6GAL2_uc002tds.3_Silent_p.P153P	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	153	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTGGCTCCCCGGGGGAAGGGA	0.622000													16	252					0	0	0	0
SPOPL	339745	broad.mit.edu	37	2	139316621	139316621	+	Silent	SNP	A	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:139316621A>C	uc002tvh.2	+	6	910	c.510A>C	c.(508-510)ATA>ATC	p.I170I		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	170						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		CAGTAAACATATCAGGACATA	0.353000													14	77					0	0	0	0
SPOPL	339745	broad.mit.edu	37	2	139316682	139316683	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:139316682_139316683GG>TT	uc002tvh.2	+	6	971_972	c.571_572GG>TT	c.(571-573)GGT>TTT	p.G191F		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	191						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		AGAAGATTTAGGTAATCTCTGG	0.366000													27	100					0	0	0	0
TANC1	85461	broad.mit.edu	37	2	160031502	160031502	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:160031502C>G	uc002uag.2	+	12	1816	c.1542C>G	c.(1540-1542)TAC>TAG	p.Y514*	TANC1_uc010fol.1_Nonsense_Mutation_p.Y408*|TANC1_uc010zcm.1_Nonsense_Mutation_p.Y506*|TANC1_uc010fom.1_Nonsense_Mutation_p.Y320*|TANC1_uc002uai.1_5'Flank	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	514						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						ACAACACGTACACTTGCCTGG	0.577000													46	308					0	0	0	0
GAD1	2571	broad.mit.edu	37	2	171686090	171686090	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:171686090G>T	uc002ugi.2	+	4	673	c.251G>T	c.(250-252)CGG>CTG	p.R84L	GAD1_uc002ugh.2_Missense_Mutation_p.R84L	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	84					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AACAGCGACCGGGATGCCCGC	0.547000													4	89					0.000602214	0.000660259	1	0
NFE2L2	4780	broad.mit.edu	37	2	178098950	178098950	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:178098950A>C	uc002ulh.3	-	2	650	c.95T>G	c.(94-96)GTA>GGA	p.V32G	NFE2L2_uc002ulg.3_Missense_Mutation_p.V16G|NFE2L2_uc010zfa.1_Missense_Mutation_p.V16G|NFE2L2_uc002uli.3_Missense_Mutation_p.V16G|NFE2L2_uc010fra.2_Missense_Mutation_p.V16G|NFE2L2_uc010frb.2_Missense_Mutation_p.V16G	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	32					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			TTCTCGACTTACTCCAAGATC	0.368000			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			6	34					0	0	0	0
PDE11A	50940	broad.mit.edu	37	2	178936794	178936794	+	Missense_Mutation	SNP	C	T	T	rs149522660	byFrequency	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:178936794C>T	uc002ulq.2	-	1	689	c.371G>A	c.(370-372)AGT>AAT	p.S124N	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	124					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			GCGGGCAAAACTCTTCCTTAG	0.612000									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				17	54					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179598558	179598558	+	Silent	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:179598558G>T	uc010zfg.1	-	50	12050	c.11826C>A	c.(11824-11826)ACC>ACA	p.T3942T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.T603T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4869							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCTTGCAGGGTAACGGTTT	0.413000													14	72					1.3612e-06	1.62986e-06	1	0
TTN	7273	broad.mit.edu	37	2	179640610	179640610	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:179640610G>A	uc010zfg.1	-	28	6205	c.5981C>T	c.(5980-5982)TCG>TTG	p.S1994L	TTN_uc010zfh.1_Missense_Mutation_p.S1948L|TTN_uc010zfi.1_Missense_Mutation_p.S1948L|TTN_uc010zfj.1_Missense_Mutation_p.S1948L|TTN_uc002unb.2_Missense_Mutation_p.S1994L|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1994							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCTCTTCCGACTCTTCAGG	0.438000													21	126					0	0	0	0
CPS1	1373	broad.mit.edu	37	2	211532931	211532931	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:211532931A>T	uc002vee.3	+	34	4156	c.4024A>T	c.(4024-4026)ATT>TTT	p.I1342F	CPS1_uc010fur.2_Missense_Mutation_p.I1348F|CPS1_uc010fus.2_Missense_Mutation_p.I891F	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1342					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TGGTGAAGGTATTCATACAGC	0.378000													14	56					0	0	0	0
TTLL4	9654	broad.mit.edu	37	2	219609873	219609873	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:219609873A>G	uc002viy.2	+	6	2073	c.1703A>G	c.(1702-1704)GAG>GGG	p.E568G	TTLL4_uc010zkl.1_Missense_Mutation_p.E403G|TTLL4_uc010fvx.2_Missense_Mutation_p.E568G|TTLL4_uc010zkm.1_5'Flank	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	568					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TCCAATCATGAGAAAGTTGTC	0.473000													30	94					0	0	0	0
CUL3	8452	broad.mit.edu	37	2	225365129	225365129	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr2:225365129T>A	uc002vny.2	-	11	1945	c.1561A>T	c.(1561-1563)AAG>TAG	p.K521*	CUL3_uc010zls.1_Nonsense_Mutation_p.K455*|CUL3_uc010fwy.1_Nonsense_Mutation_p.K527*|CUL3_uc002vnz.1_5'UTR	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	521					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ATGTTGCACTTTGGTGTGGCT	0.413000													20	105					0	0	0	0
MACROD2	140733	broad.mit.edu	37	20	15210612	15210612	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr20:15210612G>T	uc002wou.2	+	6	709	c.445G>T	c.(445-447)GCC>TCC	p.A149S	MACROD2_uc002wot.2_Missense_Mutation_p.A149S|MACROD2_uc002woz.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	149	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				AGGGCCAATAGCCAGGGGCCA	0.358000													5	31					2.7689e-08	3.40499e-08	1	0
C20orf26	26074	broad.mit.edu	37	20	20150070	20150070	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr20:20150070G>A	uc002wru.2	+	13	1427	c.1351G>A	c.(1351-1353)GAC>AAC	p.D451N	C20orf26_uc010zse.1_Missense_Mutation_p.D431N|C20orf26_uc010zsf.1_Missense_Mutation_p.D451N	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	451										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CCTCGAGCAGGACCTCTACGT	0.493000													14	71					0	0	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060815	35060815	+	Missense_Mutation	SNP	G	A	A	rs141000110	byFrequency	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr20:35060815G>A	uc002xff.2	+	3	1130	c.695G>A	c.(694-696)CGC>CAC	p.R232H	DLGAP4_uc010zvp.1_Missense_Mutation_p.R232H	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	232					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				ACACTAGGCCGCCAGGCAGAA	0.597000													9	85					0	0	0	0
NCOA3	8202	broad.mit.edu	37	20	46254145	46254145	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr20:46254145G>A	uc002xtk.2	+	5	482	c.277G>A	c.(277-279)GAT>AAT	p.D93N	NCOA3_uc010ght.1_Missense_Mutation_p.D93N|NCOA3_uc002xtl.2_Missense_Mutation_p.D93N|NCOA3_uc002xtm.2_Missense_Mutation_p.D93N|NCOA3_uc002xtn.2_Missense_Mutation_p.D93N|NCOA3_uc010zyc.1_5'Flank	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	93					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TTCCAATGATGATGATGTTCA	0.368000													18	45					0	0	0	0
PHACTR3	116154	broad.mit.edu	37	20	58330263	58330263	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr20:58330263G>A	uc002yau.2	+	4	852	c.385G>A	c.(385-387)GAT>AAT	p.D129N	PHACTR3_uc002yat.2_Missense_Mutation_p.D126N|PHACTR3_uc010zzw.1_Missense_Mutation_p.D88N|PHACTR3_uc002yav.2_Missense_Mutation_p.D88N|PHACTR3_uc002yaw.2_Missense_Mutation_p.D88N|PHACTR3_uc002yax.2_Missense_Mutation_p.D88N	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	129						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			TTGCAACCCCGATGGAGGACC	0.567000													9	30					0	0	0	0
TPTE	7179	broad.mit.edu	37	21	10920139	10920139	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr21:10920139C>T	uc002yip.1	-	19	1483	c.1115G>A	c.(1114-1116)AGG>AAG	p.R372K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R354K|TPTE_uc002yir.1_Missense_Mutation_p.R334K|TPTE_uc010gkv.1_Missense_Mutation_p.R234K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	372	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATCTGTTCGCCTTTCTCCAAA	0.378000													15	131					0	0	0	0
TPTE	7179	broad.mit.edu	37	21	10944746	10944746	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr21:10944746G>T	uc002yip.1	-	11	856	c.488C>A	c.(487-489)ACT>AAT	p.T163N	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.T145N|TPTE_uc002yir.1_Missense_Mutation_p.T125N|TPTE_uc010gkv.1_Missense_Mutation_p.T25N	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	163					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AATAATGGCAGTATCTAAAAT	0.318000													10	189					2.17888e-05	2.54202e-05	1	0
NCAM2	4685	broad.mit.edu	37	21	22906914	22906914	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr21:22906914C>A	uc002yld.1	+	17	2588	c.2339C>A	c.(2338-2340)ACT>AAT	p.T780N	NCAM2_uc011acb.1_Missense_Mutation_p.T638N	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	780	Cytoplasmic (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GAAAGAGTTACTAATCACGAA	0.398000													8	32					0.00448238	0.00477072	1	0
C2CD2	25966	broad.mit.edu	37	21	43332500	43332500	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr21:43332500C>A	uc002yzw.2	-	7	1136	c.894G>T	c.(892-894)AGG>AGT	p.R298S	C2CD2_uc002yzu.2_Missense_Mutation_p.R130S|C2CD2_uc002yzv.2_Missense_Mutation_p.R143S|C2CD2_uc002yzx.1_Missense_Mutation_p.R143S	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	298	C2.					cytosol|extracellular region|nucleus				ovary(1)	1						TGCTGGAGAACCTCTGAACAG	0.488000													4	18					0.00909568	0.00945951	1	0
MYO18B	84700	broad.mit.edu	37	22	26194047	26194047	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr22:26194047C>T	uc003abz.1	+	12	2754	c.2504C>T	c.(2503-2505)GCG>GTG	p.A835V	MYO18B_uc003aca.1_Missense_Mutation_p.A716V|MYO18B_uc010guy.1_Missense_Mutation_p.A716V|MYO18B_uc010guz.1_Missense_Mutation_p.A716V|MYO18B_uc011aka.1_Intron|MYO18B_uc011akb.1_Missense_Mutation_p.A348V	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	835	Myosin head-like.		A -> G (in a lung squamous cell carcinoma sample; somatic mutation).			nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CACCTGGGTGCGGCGGGGGCC	0.662000													9	17					0	0	0	0
RFTN1	23180	broad.mit.edu	37	3	16475413	16475413	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:16475413C>T	uc003cay.2	-	3	559	c.277G>A	c.(277-279)GAG>AAG	p.E93K	RFTN1_uc010hes.2_Missense_Mutation_p.E57K	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	93						plasma membrane				ovary(3)|central_nervous_system(1)	4						GGCGTCTTCTCCCGCTCATGG	0.632000													23	86					0	0	0	0
ARPP21	10777	broad.mit.edu	37	3	35730853	35730853	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:35730853T>A	uc003cgb.2	+	7	725	c.461T>A	c.(460-462)ATT>AAT	p.I154N	ARPP21_uc003cga.2_Missense_Mutation_p.I154N|ARPP21_uc011axy.1_Missense_Mutation_p.I154N|ARPP21_uc003cgf.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	154						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GAGTTTCTGATTAACACATTA	0.343000													13	53					0	0	0	0
KIF9	64147	broad.mit.edu	37	3	47277951	47277951	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:47277951G>A	uc010hjp.2	-	19	2687	c.2083C>T	c.(2083-2085)CGC>TGC	p.R695C	KIF9_uc003cqx.2_Missense_Mutation_p.R695C|KIF9_uc003cqy.2_Missense_Mutation_p.R630C|KIF9_uc011bat.1_RNA|uc003cqw.1_Intron	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	695					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AGGCGGTGGCGACACTGATCC	0.592000													11	31					0	0	0	0
EPHA6	285220	broad.mit.edu	37	3	96533606	96533606	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:96533606G>T	uc010how.1	+	1	182	c.139G>T	c.(139-141)GGG>TGG	p.G47W	EPHA6_uc003drp.1_Missense_Mutation_p.G47W	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	Error:Variant_position_missing_in_Q9UF33_after_alignment						integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGGGCGCCCCGGGACACCCCC	0.627000													5	26					1.23904e-05	1.46432e-05	1	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567000													7	25					0	0	0	0
COL6A6	131873	broad.mit.edu	37	3	130283942	130283942	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:130283942G>T	uc010htl.2	+	3	797	c.766G>T	c.(766-768)GTA>TTA	p.V256L		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	256	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGAAGAAAGTGTATCTGCCCT	0.408000													32	181					1.08312e-15	1.40806e-15	1	0
COL6A6	131873	broad.mit.edu	37	3	130287412	130287412	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:130287412G>C	uc010htl.2	+	5	2396	c.2365G>C	c.(2365-2367)GAT>CAT	p.D789H		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	789	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCGCATTGAAGATGATCTTGT	0.463000													8	85					0	0	0	0
TOPBP1	11073	broad.mit.edu	37	3	133372361	133372361	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:133372361C>T	uc003eps.2	-	7	882	c.750G>A	c.(748-750)AAG>AAA	p.K250K		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	250	BRCT 2.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						CACACTCATACTTCTGACCTG	0.348000								Other_conserved_DNA_damage_response_genes					7	27					0	0	0	0
TF	7018	broad.mit.edu	37	3	133495987	133495987	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:133495987G>A	uc003epu.1	+	21	3695	c.1967G>A	c.(1966-1968)TGT>TAT	p.C656Y	TF_uc011blt.1_Missense_Mutation_p.C529Y|TF_uc003epw.1_Missense_Mutation_p.C95Y|TF_uc003epv.1_Missense_Mutation_p.C656Y	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	656	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	GACACAGTATGTTTGGCCAAA	0.433000													5	75					0	0	0	0
IL20RB	53833	broad.mit.edu	37	3	136714353	136714353	+	Silent	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:136714353G>T	uc003eri.1	+	6	1029	c.780G>T	c.(778-780)CTG>CTT	p.L260L	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_Silent_p.L118L	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	260	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)	1						TGGGCCGGCTGCTCCAGTACT	0.522000													11	472					3.86212e-05	4.44877e-05	1	0
ZIC4	84107	broad.mit.edu	37	3	147109007	147109007	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:147109007C>T	uc003ewd.1	-	4	988	c.715G>A	c.(715-717)GAG>AAG	p.E239K	ZIC4_uc003ewc.1_Missense_Mutation_p.E169K|ZIC4_uc011bno.1_Missense_Mutation_p.E289K	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	239	C2H2-type 4.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TCGCAGCCCTCGAACTCGCAT	0.617000													6	38					0	0	0	0
ZIC4	84107	broad.mit.edu	37	3	147113980	147113980	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:147113980A>T	uc003ewd.1	-	3	620	c.347T>A	c.(346-348)TTC>TAC	p.F116Y	ZIC4_uc003ewc.1_Missense_Mutation_p.F46Y|ZIC4_uc011bno.1_Missense_Mutation_p.F166Y	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	116						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GTAGCGGAAGAAAGCGCCAGG	0.677000													8	72					0	0	0	0
GPR149	344758	broad.mit.edu	37	3	154138953	154138953	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:154138953T>C	uc003faa.2	-	3	1598	c.1498A>G	c.(1498-1500)ATT>GTT	p.I500V		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	500	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TCATAGTTAATATCACCTCCT	0.398000													35	201					0	0	0	0
KCNIP4	80333	broad.mit.edu	37	4	20852192	20852192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:20852192G>A	uc003gqe.2	-	2	295	c.211C>T	c.(211-213)CAG>TAG	p.Q71*	KCNIP4_uc003gqf.1_Nonsense_Mutation_p.Q67*|KCNIP4_uc003gqg.1_Nonsense_Mutation_p.Q26*|KCNIP4_uc003gqh.1_Nonsense_Mutation_p.Q63*|KCNIP4_uc003gqi.1_Nonsense_Mutation_p.Q26*|KCNIP4_uc010iel.2_Nonsense_Mutation_p.Q68*|KCNIP4_uc003gqd.3_Nonsense_Mutation_p.Q51*	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	88	EF-hand 1; degenerate.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				TAAAGGATCTGAAGCTCTTTC	0.458000													16	79					0	0	0	0
GABRG1	2565	broad.mit.edu	37	4	46043265	46043265	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:46043265G>T	uc003gxb.2	-	9	1290	c.1138C>A	c.(1138-1140)CCT>ACT	p.P380T		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	380	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TGGAGACCAGGAGTCATCTGA	0.393000													5	24					8.12818e-05	9.24581e-05	1	0
CHIC2	26511	broad.mit.edu	37	4	54915177	54915177	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:54915177C>A	uc003haj.1	-	3	596	c.275G>T	c.(274-276)TGT>TTT	p.C92F	PDGFRA_uc003haa.2_Intron	NM_012110	NP_036242	Q9UKJ5	CHIC2_HUMAN	cysteine-rich hydrophobic domain 2	92	CHIC motif (Cys-rich).			CGCLCCCC->SGSLSSSS: Loss of palmitoylation. Abolishes membrane association.		plasma membrane	protein binding			central_nervous_system(1)	1	all_cancers(7;0.0193)|all_neural(26;0.0209)|Lung NSC(11;0.0281)|Glioma(25;0.08)		LUSC - Lung squamous cell carcinoma(32;0.00216)			GCAGCAGCAACAAAGGCAGCC	0.373000			T	ETV6	AML								5	11					0.000602214	0.000660259	1	0
C4orf21	55345	broad.mit.edu	37	4	113468532	113468532	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:113468532T>G	uc003iau.2	-	24	5718	c.5507A>C	c.(5506-5508)GAT>GCT	p.D1836A	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Missense_Mutation_p.D294A	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	658						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		CTGTTTGGGATCCCCAACAAG	0.358000													3	19					0	0	0	0
PRDM5	11107	broad.mit.edu	37	4	121742406	121742406	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:121742406T>A	uc003idn.2	-	4	645	c.395A>T	c.(394-396)GAG>GTG	p.E132V	PRDM5_uc003ido.2_Missense_Mutation_p.E132V|PRDM5_uc010ine.2_Missense_Mutation_p.E132V|PRDM5_uc010inf.2_Missense_Mutation_p.E132V	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	132					histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						CTGTTCTTCCTCCTCAGCCTC	0.403000													28	94					0	0	0	0
FGA	2243	broad.mit.edu	37	4	155505421	155505421	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:155505421C>G	uc003iod.1	-	6	2514	c.2456G>C	c.(2455-2457)GGA>GCA	p.G819A		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	819	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GTAGTAGATTCCATTGAGATT	0.493000													26	85					0	0	0	0
FSTL5	56884	broad.mit.edu	37	4	162697070	162697070	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:162697070G>T	uc003iqh.2	-	5	1002	c.566C>A	c.(565-567)GCA>GAA	p.A189E	FSTL5_uc003iqi.2_Missense_Mutation_p.A188E|FSTL5_uc010iqv.2_Missense_Mutation_p.A188E	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	189	1 (Potential).|EF-hand 1.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ATTACTGTCTGCATCAAAATA	0.294000													10	50					5.50884e-06	6.553e-06	1	0
STOX2	56977	broad.mit.edu	37	4	184938290	184938290	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:184938290C>T	uc003ivz.1	+	4	4069	c.2634C>T	c.(2632-2634)AAC>AAT	p.N878N	uc003iwb.1_5'Flank|STOX2_uc003iwa.1_3'UTR	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	878					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		TTGAAAGTAACCGTCGTCAGA	0.498000													4	14					0	0	0	0
IRF2	3660	broad.mit.edu	37	4	185310135	185310135	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr4:185310135C>T	uc003iwf.3	-	9	1027	c.827G>A	c.(826-828)GGC>GAC	p.G276D		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	276					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		GGACGCCATGCCGGGCAGCAG	0.552000													4	156					0	0	0	0
FBXL7	23194	broad.mit.edu	37	5	15928334	15928334	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr5:15928334A>T	uc003jfn.1	+	3	944	c.463A>T	c.(463-465)AGG>TGG	p.R155W		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	155	F-box.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCGGCTCTGGAGGACTATCCG	0.657000													4	8					0	0	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576173	33576173	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr5:33576173C>T	uc003jia.1	-	19	4121	c.3958G>A	c.(3958-3960)GGA>AGA	p.G1320R	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G1235R	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1320	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CTCCAGTTTCCGACGATCCAG	0.448000										HNSCC(64;0.19)			18	60					0	0	0	0
HSD17B4	3295	broad.mit.edu	37	5	118810155	118810155	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr5:118810155G>A	uc003ksj.2	+	4	403	c.280G>A	c.(280-282)GAT>AAT	p.D94N	HSD17B4_uc011cwg.1_Missense_Mutation_p.D70N|HSD17B4_uc011cwh.1_Missense_Mutation_p.D76N|HSD17B4_uc011cwi.1_Missense_Mutation_p.D119N|HSD17B4_uc003ksk.3_5'UTR|HSD17B4_uc011cwj.1_5'Flank|HSD17B4_uc010jcn.1_5'Flank	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	94	(3R)-hydroxyacyl-CoA dehydrogenase.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	TGGAAGAATAGGTGATGTTTC	0.388000													12	82					0	0	0	0
TIMD4	91937	broad.mit.edu	37	5	156349204	156349204	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr5:156349204C>A	uc003lwh.2	-	7	975	c.918G>T	c.(916-918)ATG>ATT	p.M306I	TIMD4_uc010jii.2_Missense_Mutation_p.M278I|TIMD4_uc003lwg.2_Missense_Mutation_p.M8I	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	306	Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTTCATTCTTCATTGACATGG	0.502000													5	28					3.59834e-05	4.17132e-05	1	0
STK10	6793	broad.mit.edu	37	5	171517330	171517330	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr5:171517330G>A	uc003mbo.1	-	10	1891	c.1591C>T	c.(1591-1593)CGC>TGC	p.R531C		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	531							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ACAAATTTGCGTGTCCGCTTG	0.502000													7	188					0	0	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27834730	27834730	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:27834730G>T	uc003njx.2	-	1	630	c.578C>A	c.(577-579)CCC>CAC	p.P193H		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	193					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(2)|lung(1)	3						AACTGCCTTGGGCTTGGCAGG	0.572000													19	77					1.2644e-06	1.52398e-06	1	0
PPP1R10	5514	broad.mit.edu	37	6	30574254	30574254	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:30574254G>A	uc003nqn.1	-	8	1177	c.625C>T	c.(625-627)CGT>TGT	p.R209C	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	209	Interaction with TOX4 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						CCAGTGGAACGGAACTTGGCA	0.567000													12	78					0	0	0	0
VPS52	6293	broad.mit.edu	37	6	33236966	33236966	+	Nonsense_Mutation	SNP	G	A	A	rs148755872	byFrequency	TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:33236966G>A	uc003odm.1	-	6	583	c.373C>T	c.(373-375)CGA>TGA	p.R125*	VPS52_uc003odn.1_5'UTR|VPS52_uc003odo.1_Nonsense_Mutation_p.R50*|VPS52_uc011dqy.1_5'UTR|VPS52_uc011dqz.1_5'UTR|RPS18_uc003odp.1_5'Flank|RPS18_uc010jum.1_5'Flank	NM_022553	NP_072047	Q8N1B4	VPS52_HUMAN	vacuolar protein sorting 52	125	Potential.				protein transport	endosome membrane|Golgi apparatus				ovary(4)|skin(1)	5						TGCTCCATTCGCTGTAGGGAG	0.498000													7	99					0	0	0	0
PKHD1	5314	broad.mit.edu	37	6	51923195	51923195	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:51923195G>T	uc003pah.1	-	16	1714	c.1438C>A	c.(1438-1440)CCT>ACT	p.P480T	PKHD1_uc003pai.2_Missense_Mutation_p.P480T	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	480	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ACCACATCAGGATTCAGCCAG	0.552000													29	94					3.65163e-15	4.71345e-15	1	0
PHF3	23469	broad.mit.edu	37	6	64416739	64416739	+	Silent	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:64416739A>G	uc003pep.1	+	12	3710	c.3684A>G	c.(3682-3684)GTA>GTG	p.V1228V	PHF3_uc010kah.1_Silent_p.V1042V|PHF3_uc003pen.2_Silent_p.V1140V|PHF3_uc011dxs.1_Silent_p.V497V	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1228					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			CCTATCCAGTATCTGGCTCCC	0.398000													29	102					0	0	0	0
EYS	346007	broad.mit.edu	37	6	66094289	66094290	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:66094289_66094290CC>AA	uc011dxu.1	-	8	1826_1827	c.1288_1289GG>TT	c.(1288-1290)GGA>TTA	p.G430L	EYS_uc003peq.2_Missense_Mutation_p.G430L|EYS_uc003per.1_Missense_Mutation_p.G430L	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	430					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TTTGAATCTTCCAATTATATTG	0.307000													5	42					0	0	0	0
SLC16A10	117247	broad.mit.edu	37	6	111409193	111409193	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:111409193T>C	uc003pus.2	+	1	413	c.238T>C	c.(238-240)TGC>CGC	p.C80R	SLC16A10_uc003pur.3_Missense_Mutation_p.C80R	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	80	Helical; (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		GGCCATGTGGTGCAACGGGTC	0.662000													6	20					0	0	0	0
FABP7	2173	broad.mit.edu	37	6	123101594	123101594	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:123101594G>T	uc003pzf.2	+	2	526	c.232G>T	c.(232-234)GAT>TAT	p.D78Y	FABP7_uc003pzd.2_Missense_Mutation_p.D78Y|FABP7_uc003pze.1_Missense_Mutation_p.D78Y	NM_001446	NP_001437	O15540	FABP7_HUMAN	fatty acid binding protein 7, brain	78					negative regulation of cell proliferation	cytoplasm	lipid binding|transporter activity				0				GBM - Glioblastoma multiforme(226;0.226)	Alpha-Linolenic Acid(DB00132)|gamma-Homolinolenic acid(DB00154)|Icosapent(DB00159)	CACTGCAGATGATAGAAACTG	0.413000													3	29					0.004672	0.00494363	1	0
EPB41L2	2037	broad.mit.edu	37	6	131191188	131191188	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:131191188C>T	uc003qch.2	-	15	2304	c.2122G>A	c.(2122-2124)GAA>AAA	p.E708K	EPB41L2_uc003qce.1_Missense_Mutation_p.E86K|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Intron|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Missense_Mutation_p.E638K|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc010kfl.1_Missense_Mutation_p.E638K|EPB41L2_uc003qcd.1_5'Flank|EPB41L2_uc003qcj.1_Missense_Mutation_p.E105K	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	708					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CCATTCATTTCTTCTGTGATT	0.458000													5	64					0	0	0	0
EYA4	2070	broad.mit.edu	37	6	133783834	133783834	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:133783834G>T	uc003qec.3	+	9	1114	c.656G>T	c.(655-657)TGC>TTC	p.C219F	EYA4_uc011ecq.1_Missense_Mutation_p.C165F|EYA4_uc011ecr.1_Missense_Mutation_p.C165F|EYA4_uc003qed.3_Missense_Mutation_p.C219F|EYA4_uc003qee.3_Missense_Mutation_p.C196F|EYA4_uc011ecs.1_Missense_Mutation_p.C219F|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	219					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CAGAGTGGCTGCCTCAGTTAC	0.468000													13	46					6.49762e-13	8.2697e-13	1	0
PLEKHG1	57480	broad.mit.edu	37	6	151152187	151152187	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:151152187G>C	uc003qny.1	+	16	2252	c.1940G>C	c.(1939-1941)GGG>GCG	p.G647A	PLEKHG1_uc011eel.1_Missense_Mutation_p.G687A|PLEKHG1_uc011eem.1_Missense_Mutation_p.G706A|PLEKHG1_uc003qnz.2_Missense_Mutation_p.G647A	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	647					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		ACTCCCTTTGGGTCATCCATA	0.448000													7	34					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152501328	152501328	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:152501328G>T	uc010kiw.2	-	129	24005	c.23403C>A	c.(23401-23403)AGC>AGA	p.S7801R	SYNE1_uc010kiv.2_Missense_Mutation_p.S2325R|SYNE1_uc003qos.3_Missense_Mutation_p.S2325R|SYNE1_uc003qot.3_Missense_Mutation_p.S7730R|SYNE1_uc003qou.3_Missense_Mutation_p.S7801R|SYNE1_uc003qop.3_5'Flank|SYNE1_uc011eez.1_Missense_Mutation_p.S3R|SYNE1_uc003qoq.3_Missense_Mutation_p.S3R|SYNE1_uc003qor.3_Missense_Mutation_p.S701R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7801	Spectrin 27.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GAGAAACTTTGCTTTCCATTT	0.403000										HNSCC(10;0.0054)			18	75					1.99824e-07	2.42453e-07	1	0
SYNE1	23345	broad.mit.edu	37	6	152529258	152529258	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr6:152529258A>T	uc010kiw.2	-	125	23275	c.22673T>A	c.(22672-22674)ATT>AAT	p.I7558N	SYNE1_uc010kiv.2_Missense_Mutation_p.I2082N|SYNE1_uc003qos.3_Missense_Mutation_p.I2082N|SYNE1_uc003qot.3_Missense_Mutation_p.I7487N|SYNE1_uc003qou.3_Missense_Mutation_p.I7558N|SYNE1_uc003qor.3_Missense_Mutation_p.I458N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7558	HAT 11.|Cytoplasmic (Potential).|Spectrin 25.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGGCTGTCAATGATCCCCCG	0.502000										HNSCC(10;0.0054)			4	39					0	0	0	0
NFE2L3	9603	broad.mit.edu	37	7	26225151	26225151	+	Silent	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:26225151T>C	uc003sxq.2	+	4	2105	c.1833T>C	c.(1831-1833)TGT>TGC	p.C611C		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	611	Leucine-zipper.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						ATGATGTATGTAACTTGCAAG	0.353000													9	58					0	0	0	0
MLXIPL	51085	broad.mit.edu	37	7	73008629	73008629	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:73008629G>A	uc003tyn.1	-	16	2463	c.2415C>T	c.(2413-2415)TAC>TAT	p.Y805Y	MLXIPL_uc003tyj.1_Silent_p.Y184Y|MLXIPL_uc003tyk.1_Silent_p.Y784Y|MLXIPL_uc003tyl.1_Silent_p.Y803Y|MLXIPL_uc003tym.1_Silent_p.Y786Y|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Silent_p.Y711Y	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	805					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				GCAGAGAGCAGTACTGGTCCA	0.627000													14	56					0	0	0	0
ABHD11	83451	broad.mit.edu	37	7	73151996	73151996	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:73151996T>A	uc003tzb.2	-	3	415	c.358A>T	c.(358-360)AGC>TGC	p.S120C	RFC2_uc011kfa.1_Intron|ABHD11_uc011kfb.1_Missense_Mutation_p.S120C|ABHD11_uc003tzc.2_Missense_Mutation_p.S113C|ABHD11_uc003tza.2_Missense_Mutation_p.S7C	NM_148912	NP_683710	Q8NFV4	ABHDB_HUMAN	abhydrolase domain containing 11 isoform 1	120							hydrolase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				AGGTCCTGGCTCATGATCTCG	0.637000													4	31					0	0	0	0
FZD1	8321	broad.mit.edu	37	7	90895658	90895658	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:90895658G>T	uc003ula.2	+	1	1876	c.1463G>T	c.(1462-1464)CGT>CTT	p.R488L		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	488	Extracellular (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			GACGCGCTGCGTGGCTTCGTG	0.622000													32	165					6.00712e-18	7.86544e-18	1	0
CCDC132	55610	broad.mit.edu	37	7	92905556	92905556	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:92905556A>T	uc003umo.2	+	12	1009	c.881A>T	c.(880-882)GAA>GTA	p.E294V	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.E264V|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Intron|CCDC132_uc003umn.2_Missense_Mutation_p.E294V	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	294											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			GGTTATGTGGAACTATGTGCA	0.378000													29	90					0	0	0	0
COL1A2	1278	broad.mit.edu	37	7	94058730	94058730	+	Silent	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:94058730A>G	uc003ung.1	+	51	4413	c.3942A>G	c.(3940-3942)GTA>GTG	p.V1314V	COL1A2_uc011kib.1_Silent_p.V166V	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1314	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CTGTTCTTGTAGATGGCTGCT	0.478000										HNSCC(75;0.22)			7	59					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103207056	103207056	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:103207056G>C	uc003vca.2	-	32	4899	c.4739C>G	c.(4738-4740)CCG>CGG	p.P1580R	RELN_uc010liz.2_Missense_Mutation_p.P1580R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1580					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACCATGTTGCGGTTGCCACCA	0.483000													14	43					0	0	0	0
PAX4	5078	broad.mit.edu	37	7	127251714	127251714	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:127251714A>G	uc010lld.1	-	8	970	c.764T>C	c.(763-765)GTG>GCG	p.V255A	PAX4_uc003vmf.2_Missense_Mutation_p.V253A|PAX4_uc003vmg.1_Missense_Mutation_p.V255A	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	263					cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGCTGTGGGCACACTGCCAGG	0.582000													15	71					0	0	0	0
CREB3L2	64764	broad.mit.edu	37	7	137567275	137567275	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:137567275G>A	uc003vtw.2	-	11	1765	c.1370C>T	c.(1369-1371)TCC>TTC	p.S457F	CREB3L2_uc003vtv.2_Missense_Mutation_p.S394F	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	457	Lumenal (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						GAGCAGGGAGGAACCTCTATC	0.582000			T	FUS	fibromyxoid sarcoma								6	42					0	0	0	0
KIAA1549	57670	broad.mit.edu	37	7	138604033	138604033	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:138604033C>T	uc011kql.1	-	2	388	c.339G>A	c.(337-339)CCG>CCA	p.P113P	KIAA1549_uc003vuk.3_Silent_p.P63P|KIAA1549_uc011kqj.1_Silent_p.P113P	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	113						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TAGTGGCAGACGGCGGGGCTG	0.517000			O	BRAF	pilocytic astrocytoma								11	95					0	0	0	0
OR6V1	346517	broad.mit.edu	37	7	142749510	142749510	+	Silent	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:142749510C>T	uc011ksv.1	+	1	73	c.73C>T	c.(73-75)CTG>TTG	p.L25L		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	25	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					GCAGGCCCTTCTGTATGGCCC	0.512000													4	154					0	0	0	0
C7orf33	202865	broad.mit.edu	37	7	148288032	148288032	+	Silent	SNP	T	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:148288032T>G	uc003wew.2	+	1	376	c.15T>G	c.(13-15)GTT>GTG	p.V5V		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	5										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			AAGTGGAAGTTCAAAGCCTCA	0.537000													10	37					0	0	0	0
CLVS1	157807	broad.mit.edu	37	8	62212794	62212794	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:62212794C>A	uc003xuh.2	+	2	732	c.408C>A	c.(406-408)TAC>TAA	p.Y136*	CLVS1_uc003xug.2_Nonsense_Mutation_p.Y136*|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Nonsense_Mutation_p.Y136*	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	136	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						GAGACCATTACGGCAGGAAGA	0.443000													9	28					2.17888e-05	2.54202e-05	1	0
NCOA2	10499	broad.mit.edu	37	8	71036232	71036232	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:71036232T>A	uc003xyn.1	-	21	4342	c.4180A>T	c.(4180-4182)ATG>TTG	p.M1394L	NCOA2_uc011lfb.1_Missense_Mutation_p.M482L	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1394					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TTGGTCGCCATGGACACATTG	0.517000			T	RUNXBP2	AML								6	30					0	0	0	0
C8orf37	157657	broad.mit.edu	37	8	96259940	96259940	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:96259940G>A	uc003yho.1	-	6	549	c.529C>T	c.(529-531)CGG>TGG	p.R177W		NM_177965	NP_808880	Q96NL8	CH037_HUMAN	hypothetical protein LOC157657	177											0	Breast(36;3.41e-05)					GCATATGCCCGTGTTCCTTTC	0.393000													7	45					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	114449052	114449052	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:114449052G>C	uc003ynu.2	-	1	191	c.32C>G	c.(31-33)GCA>GGA	p.A11G	CSMD3_uc011lhx.1_Missense_Mutation_p.A11G|CSMD3_uc010mcx.1_Missense_Mutation_p.A11G|CSMD3_uc003ynx.3_Missense_Mutation_p.A11G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	11	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGATTCCTTTGCTCGGCTTTC	0.517000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)	OREG0018933	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	79					0	0	0	0
ENPP2	5168	broad.mit.edu	37	8	120595959	120595959	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:120595959C>G	uc003yot.1	-	17	1627	c.1541G>C	c.(1540-1542)TGT>TCT	p.C514S	ENPP2_uc011lic.1_Missense_Mutation_p.C31S|ENPP2_uc003yor.1_Missense_Mutation_p.C153S|ENPP2_uc003yos.1_Missense_Mutation_p.C566S|ENPP2_uc010mdd.1_Missense_Mutation_p.C514S	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	514					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			TGACTTACCACACATAACATT	0.318000													10	63					0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139649017	139649017	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:139649017C>T	uc003yvd.2	-	48	3970	c.3523G>A	c.(3523-3525)GCA>ACA	p.A1175T	COL22A1_uc011ljo.1_Missense_Mutation_p.A455T	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1175	Pro-rich.|Gly-rich.|Collagen-like 11.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCACCATCTGCACCACGTTCT	0.373000										HNSCC(7;0.00092)			33	162					0	0	0	0
SPATC1	375686	broad.mit.edu	37	8	145095233	145095233	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr8:145095233A>T	uc011lkw.1	+	2	737	c.635A>T	c.(634-636)AAC>ATC	p.N212I	SPATC1_uc011lkx.1_Missense_Mutation_p.N212I	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	212										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTCTCTCAGAACCTGCTGGCC	0.687000													5	56					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35707795	35707795	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr9:35707795T>A	uc003zxt.2	-	35	4919	c.4565A>T	c.(4564-4566)AAG>ATG	p.K1522M		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1522	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			AAACTGGCGCTTGGCAGTAGG	0.547000													73	132					0	0	0	0
TRIM14	9830	broad.mit.edu	37	9	100862405	100862405	+	Silent	SNP	G	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr9:100862405G>A	uc004ayd.2	-	3	363	c.345C>T	c.(343-345)TTC>TTT	p.F115F	TRIM14_uc004ayf.1_Silent_p.F22F|TRIM14_uc004ayg.1_Silent_p.F115F|TRIM14_uc004ayh.1_Silent_p.F115F|TRIM14_uc004ayi.1_Silent_p.F115F|TRIM14_uc004ayj.1_Silent_p.F22F	NM_033220	NP_150089	Q14142	TRI14_HUMAN	tripartite motif protein TRIM14 isoform alpha	115						cytoplasm|intracellular	zinc ion binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TGAGTTCAGTGAATTTCCCCT	0.353000													14	71					0	0	0	0
INVS	27130	broad.mit.edu	37	9	103046750	103046750	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr9:103046750C>T	uc004bap.1	+	13	2145	c.1933C>T	c.(1933-1935)CCT>TCT	p.P645S	INVS_uc011lve.1_Missense_Mutation_p.P549S|INVS_uc004bao.1_Missense_Mutation_p.P645S|INVS_uc004baq.1_Missense_Mutation_p.P549S|INVS_uc004bar.1_Missense_Mutation_p.P549S|INVS_uc010mtb.1_Missense_Mutation_p.P319S	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	645					negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				CAAGCAGCCTCCTGCTGGCAA	0.652000													9	40					0	0	0	0
SEC16A	9919	broad.mit.edu	37	9	139345823	139345823	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr9:139345823G>C	uc004chx.2	-	23	6506	c.6197C>G	c.(6196-6198)CCA>CGA	p.P2066R	SEC16A_uc004chr.2_5'Flank|SEC16A_uc004chs.2_5'UTR|SEC16A_uc004cht.2_Missense_Mutation_p.P97R|SEC16A_uc004chu.2_Missense_Mutation_p.P251R|SEC16A_uc004chv.3_Missense_Mutation_p.P1456R|SEC16A_uc004chw.2_Missense_Mutation_p.P2066R|SEC16A_uc010nbn.2_Missense_Mutation_p.P2066R	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1888	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		ATCCCACCCTGGGGGGGCCTC	0.632000													3	23					0	0	0	0
XIST	7503	broad.mit.edu	37	X	73064328	73064328	+	RNA	SNP	T	C	C			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chrX:73064328T>C	uc004ebm.1	-	1		c.8261A>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TAGGACTTTATTCAAATAGGA	0.428000													6	17					0	0	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221839	118221839	+	Silent	SNP	C	A	A			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chrX:118221839C>A	uc004era.3	-	11	3354	c.3354G>T	c.(3352-3354)CTG>CTT	p.L1118L		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1118										ovary(4)|skin(1)	5						GTCTGGGAAGCAGCTGCTCCT	0.488000													6	77					0.00116845	0.0012734	1	0
Unknown	0	broad.mit.edu	37	1	143391923	143391924	+	IGR	DEL	AT	-	-			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr1:143391923_143391924delAT								None (None upstream) : LOC100286793 (255715 downstream)																							TATTTTGGAGATATATATATAT	0.262													---	---	---							
Unknown	0	broad.mit.edu	37	11	55370800	55370803	+	IGR	DEL	ACTT	-	-			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr11:55370800_55370803delACTT								OR4C16 (30266 upstream) : OR4C11 (116 downstream)																							GAACCCACAAACTTAGATACGATG	0.343													---	---	---							
ALDH1L2	160428	broad.mit.edu	37	12	105434423	105434423	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr12:105434423delC	uc001tlc.2	-	16	2040	c.1913delG	c.(1912-1914)GGCfs	p.G638fs	ALDH1L2_uc009zuo.2_Frame_Shift_Del_p.G93fs|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	638	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						CTTTGGAAAGCCTGCTTTCAC	0.483													---	---	---							
WDR72	256764	broad.mit.edu	37	15	53889325	53889325	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr15:53889325delC	uc002acj.2	-	18	3141	c.3099delG	c.(3097-3099)TGGfs	p.W1033fs		NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	1033										lung(1)|skin(1)	2				all cancers(107;0.0511)		GTTCTTCTGTCCATTCCAGCT	0.393													---	---	---							
ZNF132	7691	broad.mit.edu	37	19	58945525	58945526	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr19:58945525_58945526insT	uc002qst.3	-	3	1686_1687	c.1285_1286insA	c.(1285-1287)AGAfs	p.R429fs		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	429						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		TTCATACGGTCTTTCTCCAGTG	0.465													---	---	---							
HMGXB4	10042	broad.mit.edu	37	22	35689036	35689037	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr22:35689036_35689037delTG	uc003anl.2	+	10	1864_1865	c.1690_1691delTG	c.(1690-1692)TGTfs	p.C564fs	HMGXB4_uc003ank.2_Frame_Shift_Del_p.C455fs	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	564					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						TTCCATTATCTGTGCCCTTGGC	0.490													---	---	---							
CNTN6	27255	broad.mit.edu	37	3	1363354	1363355	+	Frame_Shift_Ins	INS	-	GA	GA			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr3:1363354_1363355insGA	uc003boz.2	+	8	1049_1050	c.782_783insGA	c.(781-783)TGGfs	p.W261fs	CNTN6_uc011asj.1_Frame_Shift_Ins_p.W189fs|CNTN6_uc003bpa.2_Frame_Shift_Ins_p.W261fs	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	261	Ig-like C2-type 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GATATTAGTTGGAGAAGGTTGG	0.416													---	---	---							
Unknown	0	broad.mit.edu	37	7	61822074	61822074	+	IGR	DEL	C	-	-			TCGA-CN-6019-01A-11D-1683-08	TCGA-CN-6019-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	00769a89-ffc5-46f5-a42e-25b3eae886c2	424fb678-3744-4165-b4b3-daffa0319990	g.chr7:61822074delC								None (None upstream) : LOC643955 (929598 downstream)																							AAGGACCTCACCCAGCAGGAG	0.637													---	---	---							
