Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
TMEM222	84065	broad.mit.edu	37	1	27657224	27657224	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:27657224A>G	uc001bnr.3	+	2	261	c.208A>G	c.(208-210)ATC>GTC	p.I70V	TMEM222_uc001bns.3_RNA|TMEM222_uc001bnt.3_RNA|TMEM222_uc001bnu.3_Intron	NM_032125	NP_115501	Q9H0R3	TM222_HUMAN	transmembrane protein 222	70	Helical; (Potential).					integral to membrane	protein binding				0						GTTTTTCCCCATCATCGGCCA	0.582000													74	148					0	0	0	0
EIF2C4	192670	broad.mit.edu	37	1	36291577	36291577	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:36291577G>C	uc001bzj.1	+	6	866	c.676G>C	c.(676-678)GAG>CAG	p.E226Q		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	226	PAZ.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTTCATGTGTGAGGTTTTAGA	0.418000													60	91					0	0	0	0
IL12RB2	3595	broad.mit.edu	37	1	67787297	67787297	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:67787297G>C	uc001ddu.2	+	3	729	c.89G>C	c.(88-90)AGA>ACA	p.R30T	IL12RB2_uc010oqi.1_Missense_Mutation_p.R30T|IL12RB2_uc010oqj.1_Missense_Mutation_p.R30T|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.R30T|IL12RB2_uc010oqm.1_Missense_Mutation_p.R30T|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	30	Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						GCGTGCAAGAGAGGCGATGTG	0.393000													33	66					0	0	0	0
C1orf173	127254	broad.mit.edu	37	1	75037078	75037078	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:75037078C>T	uc001dgg.2	-	14	4535	c.4316G>A	c.(4315-4317)CGG>CAG	p.R1439Q		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1439	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGAGGTCTTCCGCTCCAGGGC	0.612000													14	126					0	0	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110028684	110028684	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:110028684G>A	uc001dxr.2	+	2	148	c.133G>A	c.(133-135)GAG>AAG	p.E45K	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	45										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		TCTAGGGGCTGAGCTGGAGGA	0.527000													33	43					0	0	0	0
CTSS	1520	broad.mit.edu	37	1	150724308	150724308	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:150724308G>A	uc001evn.2	-	5	709	c.576C>T	c.(574-576)ATC>ATT	p.I192I	CTSS_uc010pcj.1_Silent_p.I142I|CTSS_uc001evo.1_Silent_p.I192I	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	192					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			TGTTATCAATGATGTACTGGA	0.468000													48	88					0	0	0	0
CTSS	1520	broad.mit.edu	37	1	150724458	150724458	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:150724458G>A	uc001evn.2	-	5	559	c.426C>T	c.(424-426)TTC>TTT	p.F142F	CTSS_uc010pcj.1_Silent_p.F92F|CTSS_uc001evo.1_Silent_p.F142F	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	142					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			CCACAGCACTGAAAGCCCAGC	0.478000													15	32					0	0	0	0
CTSS	1520	broad.mit.edu	37	1	150724480	150724480	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:150724480G>T	uc001evn.2	-	5	537	c.404C>A	c.(403-405)TCT>TAT	p.S135Y	CTSS_uc010pcj.1_Missense_Mutation_p.S85Y|CTSS_uc001evo.1_Missense_Mutation_p.S135Y	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	135					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			AGCACCACAAGAACCCTAAAA	0.493000													15	28					6.31663e-08	6.63444e-08	1	0
RASAL2	9462	broad.mit.edu	37	1	178433454	178433454	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:178433454G>A	uc001glr.2	+	13	2996	c.2871G>A	c.(2869-2871)GAG>GAA	p.E957E	RASAL2_uc001glq.2_Silent_p.E1098E|RASAL2_uc009wxc.2_Silent_p.E471E	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	957					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						CCCCAGTAGAGAGGACAGCAG	0.478000													15	23					0	0	0	0
TPR	7175	broad.mit.edu	37	1	186327736	186327736	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:186327736G>A	uc001grv.2	-	13	1733	c.1436C>T	c.(1435-1437)TCA>TTA	p.S479L	TPR_uc010pop.1_Missense_Mutation_p.S555L	NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	479	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		AAGTACAGATGATTGCTTGTT	0.318000			T	NTRK1	papillary thyroid								28	75					0	0	0	0
RRP15	51018	broad.mit.edu	37	1	218475717	218475717	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:218475717G>T	uc001hlj.2	+	2	251	c.221G>T	c.(220-222)TGT>TTT	p.C74F		NM_016052	NP_057136	Q9Y3B9	RRP15_HUMAN	ribosomal RNA processing 15 homolog	74						mitochondrion|nucleolus	protein binding				0				all cancers(67;0.0315)|OV - Ovarian serous cystadenocarcinoma(81;0.0411)|GBM - Glioblastoma multiforme(131;0.06)|Epithelial(68;0.248)		GCTGAGCCCTGTGACAAAGAA	0.428000													23	30					1.64293e-13	1.77013e-13	1	0
TMEM63A	9725	broad.mit.edu	37	1	226041387	226041387	+	Silent	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:226041387G>C	uc001hpm.1	-	19	1990	c.1740C>G	c.(1738-1740)CTC>CTG	p.L580L		NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	580						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					GGAAGGTATAGAGGATGAGAC	0.602000													5	5					0	0	0	0
HEATR1	55127	broad.mit.edu	37	1	236718636	236718636	+	Silent	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:236718636A>G	uc001hyd.1	-	41	6008	c.5883T>C	c.(5881-5883)CCT>CCC	p.P1961P	HEATR1_uc009xgh.1_Silent_p.P1123P	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1961					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TGTCAGCAAAAGGCTTCACTA	0.483000													3	122					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237713931	237713931	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:237713931G>A	uc001hyl.1	+	27	3274	c.3154G>A	c.(3154-3156)GAG>AAG	p.E1052K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1052	Cytoplasmic (By similarity).|2.|B30.2/SPRY 2.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAGCCTCCGCGAGGCTGTGCG	0.493000													6	6					0	0	0	0
KIF26B	55083	broad.mit.edu	37	1	245850334	245850334	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:245850334C>G	uc001ibf.1	+	12	4489	c.4049C>G	c.(4048-4050)TCT>TGT	p.S1350C	KIF26B_uc001ibg.1_Missense_Mutation_p.S968C|KIF26B_uc001ibh.1_Missense_Mutation_p.S592C	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1350					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GGAGATGACTCTTTCAACAAA	0.557000													13	19					0	0	0	0
PRKCQ	5588	broad.mit.edu	37	10	6506278	6506278	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:6506278G>A	uc001ijj.1	-	13	1517	c.1442C>T	c.(1441-1443)GCG>GTG	p.A481V	PRKCQ_uc009xim.1_Missense_Mutation_p.A481V|PRKCQ_uc001iji.1_Missense_Mutation_p.A514V|PRKCQ_uc009xin.1_Missense_Mutation_p.A445V|PRKCQ_uc010qax.1_Missense_Mutation_p.A356V	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	481	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						CTCTTACGTCGCTCTGGAAAG	0.448000													88	275					0	0	0	0
PPYR1	5540	broad.mit.edu	37	10	47087415	47087415	+	Missense_Mutation	SNP	G	A	A	rs147108354		TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:47087415G>A	uc001jee.2	+	3	1051	c.632G>A	c.(631-633)CGC>CAC	p.R211H	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.R211H	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	211	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GCTCACCACCGCACCATCTAC	0.582000													5	177					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61828403	61828403	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61828403C>G	uc001jky.2	-	37	12428	c.12236G>C	c.(12235-12237)AGA>ACA	p.R4079T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4079					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACCAGTCCTTCTACTGCTCCT	0.473000													56	100					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61829289	61829289	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61829289C>G	uc001jky.2	-	37	11542	c.11350G>C	c.(11350-11352)GAT>CAT	p.D3784H	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3784					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTAAAGTTATCTTTTTGAAAA	0.343000													64	96					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61829440	61829440	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61829440C>T	uc001jky.2	-	37	11391	c.11199G>A	c.(11197-11199)ATG>ATA	p.M3733I	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3733					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTTCTTTCTTCATGGTCATGG	0.428000													106	151					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61830234	61830234	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61830234C>T	uc001jky.2	-	37	10597	c.10405G>A	c.(10405-10407)GAG>AAG	p.E3469K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3469					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCCCTCCTCCTCGATAACT	0.448000													28	51					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61831482	61831482	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61831482C>G	uc001jky.2	-	37	9349	c.9157G>C	c.(9157-9159)GAG>CAG	p.E3053Q	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3053					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGGCTAAACTCTAAAGAATCA	0.473000													56	82					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61831782	61831782	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61831782C>T	uc001jky.2	-	37	9049	c.8857G>A	c.(8857-8859)GAG>AAG	p.E2953K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2953					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTGAGCTCTCGCTCCTCCTG	0.468000													24	54					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61831830	61831830	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61831830C>T	uc001jky.2	-	37	9001	c.8809G>A	c.(8809-8811)GAA>AAA	p.E2937K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2937					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGTCCCCTTCTTTCACAACA	0.443000													14	38					0	0	0	0
ANK3	288	broad.mit.edu	37	10	61831953	61831953	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:61831953C>T	uc001jky.2	-	37	8878	c.8686G>A	c.(8686-8688)GAA>AAA	p.E2896K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2896					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GACATAAATTCATTCTTTTGA	0.353000													20	52					0	0	0	0
PAX2	5076	broad.mit.edu	37	10	102568873	102568873	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:102568873G>A	uc001krk.3	+	8	1418	c.868G>A	c.(868-870)GAG>AAG	p.E290K	PAX2_uc001krl.3_Missense_Mutation_p.E267K|PAX2_uc001krm.3_Missense_Mutation_p.E290K|PAX2_uc001kro.3_Missense_Mutation_p.E267K|PAX2_uc001krn.3_Missense_Mutation_p.E267K|PAX2_uc010qps.1_Missense_Mutation_p.E266K|PAX2_uc001krp.1_Missense_Mutation_p.E263K	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	290					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		CCAGGGGAACGAGTACTCCCT	0.587000													40	111					0	0	0	0
C10orf76	79591	broad.mit.edu	37	10	103799781	103799781	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:103799781C>G	uc009xwy.1	-	2	193	c.91G>C	c.(91-93)GAG>CAG	p.E31Q	C10orf76_uc001kui.2_Missense_Mutation_p.E31Q	NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591	31						integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		ATGAAGATCTCATCATACATC	0.458000													67	129					0	0	0	0
KIAA1598	57698	broad.mit.edu	37	10	118646072	118646072	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:118646072G>T	uc009xyw.2	-	17	2177	c.1679C>A	c.(1678-1680)CCC>CAC	p.P560H	KIAA1598_uc001lcz.3_Silent_p.S455S|KIAA1598_uc010qso.1_Missense_Mutation_p.P500H|KIAA1598_uc001lcy.3_Missense_Mutation_p.P530H|KIAA1598_uc001lda.1_RNA	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	560					axon guidance	axon					0				all cancers(201;0.00494)		AATGCTACTGGGAGGCCTATG	0.373000													26	48					4.7796e-09	5.08404e-09	1	0
Unknown	0	broad.mit.edu	37	11	31125289	31125289	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr11:31125289C>G	uc009yjk.1	-	2	192	c.123G>C	c.(121-123)TTG>TTC	p.L41F	uc009yjl.1_5'UTR|DCDC1_uc001msu.1_Missense_Mutation_p.L212F					RecName: Full=Doublecortin domain-containing protein 5;																		GGTCAAAGGTCAAACCCAAAG	0.373000													26	58					0	0	0	0
PLCB3	5331	broad.mit.edu	37	11	64022744	64022744	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr11:64022744C>T	uc001nzb.2	+	5	426	c.426C>T	c.(424-426)ATC>ATT	p.I142I	PLCB3_uc009ypg.1_Silent_p.I142I|PLCB3_uc009yph.1_Silent_p.I75I|PLCB3_uc009ypi.2_Silent_p.I142I	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	142					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						CTATGAACATCCTGGCTCAGA	0.647000													11	22					0	0	0	0
FGF19	9965	broad.mit.edu	37	11	69514326	69514326	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr11:69514326C>T	uc001opf.2	-	3	818	c.355G>A	c.(355-357)GAC>AAC	p.D119N		NM_005117	NP_005108	O95750	FGF19_HUMAN	fibroblast growth factor 19 precursor	119					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of bile acid biosynthetic process|nervous system development|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import|positive regulation of JNK cascade	extracellular region	fibroblast growth factor receptor binding|growth factor activity			skin(1)	1	all_cancers(3;5.53e-114)|all_epithelial(3;1.34e-121)|Breast(3;9.28e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;6.15e-15)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;3.05e-56)|all cancers(3;2.69e-50)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)			AAAGCACAGTCTTCCTCCGAG	0.567000													10	17					0	0	0	0
POLD3	10714	broad.mit.edu	37	11	74340350	74340350	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr11:74340350G>C	uc001ovf.1	+	9	1063	c.988G>C	c.(988-990)GAT>CAT	p.D330H	POLD3_uc009yua.1_Missense_Mutation_p.D224H	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	330					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					TCCTGAATCTGATAGCAGTGA	0.398000													40	41					0	0	0	0
APOA5	116519	broad.mit.edu	37	11	116661546	116661546	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr11:116661546C>T	uc001ppr.2	-	3	407	c.399G>A	c.(397-399)ACG>ACA	p.T133T	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Silent_p.T133T|APOA5_uc009yzf.2_Silent_p.T133T|APOA5_uc009yzg.2_Silent_p.T159T	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	133	Potential.				acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		TCAGATCCATCGTGTAGGGCT	0.652000													28	17					0	0	0	0
FOXM1	2305	broad.mit.edu	37	12	2968408	2968408	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:2968408G>A	uc001qlf.2	-	9	1953	c.1688C>T	c.(1687-1689)TCA>TTA	p.S563L	uc001qld.2_Intron|FOXM1_uc001qle.2_Missense_Mutation_p.S601L|FOXM1_uc001qlg.2_Missense_Mutation_p.S548L|FOXM1_uc009zea.2_Missense_Mutation_p.S548L|FOXM1_uc009zeb.2_Missense_Mutation_p.S547L	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	563					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			GGGCCCCTCTGAGAAGAGCAG	0.612000													20	30					0	0	0	0
ANO2	57101	broad.mit.edu	37	12	6031929	6031929	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:6031929G>A	uc001qnm.2	-	2	124	c.52C>T	c.(52-54)CAG>TAG	p.Q18*		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	22	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GACCCTGCCTGAGGGCTCAGC	0.622000													10	18					0	0	0	0
TAS2R31	259290	broad.mit.edu	37	12	11183373	11183373	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:11183373A>T	uc001qzo.1	-	1	634	c.562T>A	c.(562-564)TTC>ATC	p.F188I	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	188	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						GTCAGAGTGAAGGGCACTAAG	0.428000													41	92					0	0	0	0
CDKN1B	1027	broad.mit.edu	37	12	12871106	12871106	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:12871106G>A	uc001rat.2	+	1	805	c.333G>A	c.(331-333)GGG>GGA	p.G111G		NM_004064	NP_004055	P46527	CDN1B_HUMAN	cyclin-dependent kinase inhibitor 1B	111					autophagic cell death|cell cycle arrest|cellular response to lithium ion|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of protein catabolic process|S phase of mitotic cell cycle	cytosol|endosome|nucleoplasm	cyclin-dependent protein kinase inhibitor activity|protein phosphatase binding|transforming growth factor beta receptor, cytoplasmic mediator activity			ovary(1)|lung(1)	2		Prostate(47;0.0322)|all_epithelial(100;0.159)		BRCA - Breast invasive adenocarcinoma(232;0.0336)		ATGTCAGCGGGAGCCGCCCGG	0.647000									Multiple_Endocrine_Neoplasia_type_1|Multiple_Endocrine_Neoplasia_type_4				32	42					0	0	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612000													6	13					0	0	0	0
VSIG10	54621	broad.mit.edu	37	12	118506244	118506244	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:118506244C>G	uc001tws.2	-	8	1839	c.1505G>C	c.(1504-1506)AGA>ACA	p.R502T		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	502	Cytoplasmic (Potential).					integral to membrane					0						GGCGGTCACTCTGTGAATGTG	0.408000													37	77					0	0	0	0
ATP5S	27109	broad.mit.edu	37	14	50789270	50789270	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr14:50789270C>T	uc001wxw.1	+	3	886	c.194C>T	c.(193-195)GCG>GTG	p.A65V	ATP5S_uc001wxv.2_Missense_Mutation_p.A65V|ATP5S_uc001wxx.1_Missense_Mutation_p.A65V|ATP5S_uc010ant.1_Missense_Mutation_p.A37V	NM_001003803	NP_001003803	Q99766	ATP5S_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	65					ATP biosynthetic process	mitochondrial inner membrane|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity			ovary(1)|skin(1)	2	all_epithelial(31;0.000636)|Breast(41;0.0102)			OV - Ovarian serous cystadenocarcinoma(311;0.0685)		CCTGACAGGGCGGCATCCGAG	0.527000													20	40					0	0	0	0
ACOT2	10965	broad.mit.edu	37	14	74040259	74040259	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr14:74040259G>A	uc001xon.3	+	2	984	c.811G>A	c.(811-813)GAA>AAA	p.E271K	ACOT1_uc010tuc.1_Intron|ACOT2_uc001xom.2_Missense_Mutation_p.E74K	NM_006821	NP_006812	P49753	ACOT2_HUMAN	acyl-CoA thioesterase 2	271					acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	mitochondrion	carboxylesterase activity|palmitoyl-CoA hydrolase activity|protein binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0033)|OV - Ovarian serous cystadenocarcinoma(108;0.0639)		GGAGTACTTTGAAGAAGCCAT	0.453000													62	89					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106812248	106812248	+	RNA	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr14:106812248G>A	uc010tyt.1	-	352		c.13530C>T								Parts of antibodies, mostly variable regions.												0						CCCTTGCCTGGAGACTGGTGA	0.483000													3	14					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	107062535	107062535	+	RNA	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr14:107062535C>G	uc010tyt.1	-	130		c.6143G>C								Parts of antibodies, mostly variable regions.												0						CTGCCACCAGCAGGAGGAAGA	0.512000													3	36					0	0	0	0
C15orf52	388115	broad.mit.edu	37	15	40627456	40627456	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:40627456G>C	uc001zlh.3	-	11	1524	c.1508C>G	c.(1507-1509)CCG>CGG	p.P503R	C15orf52_uc010ucn.1_Missense_Mutation_p.P293R	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	503										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		CCGGCTTCTCGGGGCCAGGCC	0.667000													5	127					0	0	0	0
B2M	567	broad.mit.edu	37	15	45003747	45003747	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:45003747G>T	uc001zuc.2	+	1	63	c.3G>T	c.(1-3)ATG>ATT	p.M1I	B2M_uc010uek.1_Missense_Mutation_p.M1I|B2M_uc010bdx.1_Missense_Mutation_p.M1I	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	1					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding	p.M1V(2)		ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		GGGCCGAGATGTCTCGCTCCG	0.612000													20	17					1.96895e-08	2.0811e-08	1	0
FBN1	2200	broad.mit.edu	37	15	48737641	48737641	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:48737641G>C	uc001zwx.1	-	48	6177	c.5849C>G	c.(5848-5850)ACA>AGA	p.T1950R	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1950	EGF-like 33; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		AGACCCCACTGTATTAATGCA	0.438000													41	59					0	0	0	0
SLTM	79811	broad.mit.edu	37	15	59172279	59172279	+	Silent	SNP	T	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:59172279T>C	uc002afp.2	-	21	3112	c.3024A>G	c.(3022-3024)GTA>GTG	p.V1008V	SLTM_uc002afn.2_Silent_p.V550V|SLTM_uc002afo.2_Silent_p.V990V|SLTM_uc002afq.2_Silent_p.V577V|SLTM_uc010bgd.2_Silent_p.V577V	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	1008					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						CACTGATTTGTACAATTCTAT	0.378000													7	55					0	0	0	0
HERC1	8925	broad.mit.edu	37	15	64026927	64026927	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:64026927C>A	uc002amp.2	-	13	2790	c.2642G>T	c.(2641-2643)GGA>GTA	p.G881V	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	881					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GCCTACCTGTCCTTTAGATAA	0.403000													25	49					7.76418e-22	8.47463e-22	1	0
LCTL	197021	broad.mit.edu	37	15	66855887	66855887	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:66855887G>A	uc002aqc.2	-	4	579	c.447C>T	c.(445-447)CCC>CCT	p.P149P	LCTL_uc002aqd.3_5'UTR|LCTL_uc010bhw.2_5'UTR	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	149	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						AGGTCACGATGGGAGTGATGT	0.527000													20	34					0	0	0	0
DNAJA4	55466	broad.mit.edu	37	15	78557113	78557113	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:78557113A>G	uc002bdj.1	+	1	125	c.8A>G	c.(7-9)AAG>AGG	p.K3R	DNAJA4_uc002bdi.2_Missense_Mutation_p.K32R|DNAJA4_uc002bdk.2_5'Flank	NM_001130182	NP_001123654	Q8WW22	DNJA4_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 4	3					protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			skin(1)	1						AAGATGGTGAAGGAGACCCAG	0.507000													3	13					0	0	0	0
BTBD12	84464	broad.mit.edu	37	16	3639417	3639417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr16:3639417G>A	uc002cvp.2	-	12	4849	c.4222C>T	c.(4222-4224)CAG>TAG	p.Q1408*		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1408	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTGTTGGCCTGATGGGAGGCC	0.607000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				49	62					0	0	0	0
CIITA	4261	broad.mit.edu	37	16	10995908	10995908	+	Silent	SNP	T	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr16:10995908T>A	uc002dai.3	+	7	628	c.495T>A	c.(493-495)ACT>ACA	p.T165T	CIITA_uc002daj.3_Silent_p.T166T|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Silent_p.T165T|CIITA_uc002dah.2_Intron|CIITA_uc010bup.1_Silent_p.T165T	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	165					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						AGCCCCCCACTGTGGTGACTG	0.647000			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								4	127					0	0	0	0
PRPF8	10594	broad.mit.edu	37	17	1582626	1582626	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:1582626C>T	uc002fte.2	-	10	1482	c.1368G>A	c.(1366-1368)CTG>CTA	p.L456L		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	456						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TCAGGGCATTCAGCACATAGT	0.542000													38	66					0	0	0	0
CORO6	84940	broad.mit.edu	37	17	27943185	27943185	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:27943185G>A	uc002hel.2	-	9	1073	c.1071C>T	c.(1069-1071)CTC>CTT	p.L357L	CORO6_uc002hem.2_Silent_p.L123L|CORO6_uc002hen.2_Silent_p.L123L	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	357					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						CGTCCTGGAAGAGGTCTGACT	0.667000													8	13					0	0	0	0
CORO6	84940	broad.mit.edu	37	17	27943190	27943190	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:27943190C>G	uc002hel.2	-	9	1068	c.1066G>C	c.(1066-1068)GAC>CAC	p.D356H	CORO6_uc002hem.2_Missense_Mutation_p.D122H|CORO6_uc002hen.2_Missense_Mutation_p.D122H	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	356					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						TGGAAGAGGTCTGACTGCGGG	0.677000													7	14					0	0	0	0
AMAC1	146861	broad.mit.edu	37	17	33520358	33520358	+	Silent	SNP	A	G	G	rs74740601	by1000genomes	TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:33520358A>G	uc002hjd.2	-	1	1055	c.969T>C	c.(967-969)ATT>ATC	p.I323I		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	323	DUF6 2.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		TCTGGGCTGTAATGATGGCAA	0.547000													6	82					0	0	0	0
AMAC1	146861	broad.mit.edu	37	17	33520392	33520392	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:33520392G>C	uc002hjd.2	-	1	1021	c.935C>G	c.(934-936)GCG>GGG	p.A312G		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	312	DUF6 2.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		AACCCCTGCCGCCACGATGTC	0.567000													6	140					0	0	0	0
EZH1	2145	broad.mit.edu	37	17	40870631	40870631	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:40870631G>A	uc002iaz.2	-	9	917	c.772C>T	c.(772-774)CGA>TGA	p.R258*	EZH1_uc002iba.2_Nonsense_Mutation_p.R249*|EZH1_uc010wgt.1_Nonsense_Mutation_p.R188*|EZH1_uc010wgu.1_Nonsense_Mutation_p.R264*|EZH1_uc010wgv.1_Nonsense_Mutation_p.R218*|EZH1_uc010wgw.1_Nonsense_Mutation_p.R119*|EZH1_uc010cyp.2_Nonsense_Mutation_p.R159*|EZH1_uc010cyq.2_Nonsense_Mutation_p.R175*|EZH1_uc010cys.2_Nonsense_Mutation_p.R209*|EZH1_uc010cyo.1_Intron|EZH1_uc010cyr.1_Intron	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	258					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		GTTAGTTCTCGATACCTATTT	0.507000													16	36					0	0	0	0
ETV4	2118	broad.mit.edu	37	17	41610118	41610118	+	Silent	SNP	A	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:41610118A>C	uc002idw.2	-	8	863	c.735T>G	c.(733-735)GGT>GGG	p.G245G	ETV4_uc002idv.2_5'Flank|ETV4_uc010wih.1_Silent_p.G191G|ETV4_uc010czh.2_Silent_p.G244G|ETV4_uc010wii.1_Silent_p.G206G|ETV4_uc002idx.2_Silent_p.G245G|ETV4_uc010wij.1_Silent_p.G206G	NM_001986	NP_001977	P43268	ETV4_HUMAN	ets variant gene 4 (E1A enhancer binding	245					positive regulation of transcription, DNA-dependent	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/ETV4(6)	bone(4)|soft_tissue(2)|ovary(1)	7		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0798)		CATTGACCCCACCCTGGTCCA	0.617000			T	EWSR1|TMPRSS2|DDX5|KLK2|CANT1	Ewing sarcoma|Prostate carcinoma								7	48					0	0	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436363	72436363	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:72436363G>A	uc002jks.2	+	1	487	c.448G>A	c.(448-450)GGG>AGG	p.G150R	GPRC5C_uc002jkp.2_Missense_Mutation_p.G195R|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Missense_Mutation_p.G162R|GPRC5C_uc002jkt.2_Missense_Mutation_p.G150R|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	150	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						GAAGAACCACGGGCCCCGGGG	0.597000													4	101					0	0	0	0
GALR2	8811	broad.mit.edu	37	17	74072818	74072818	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:74072818C>G	uc002jqm.1	+	2	551	c.470C>G	c.(469-471)TCC>TGC	p.S157C	ZACN_uc002jqn.2_5'Flank|ZACN_uc002jqo.2_5'Flank|ZACN_uc010dgu.2_5'Flank	NM_003857	NP_003848	O43603	GALR2_HUMAN	galanin receptor 2	157	Helical; Name=4; (Potential).				digestion|elevation of cytosolic calcium ion concentration|feeding behavior|learning or memory|muscle contraction	integral to membrane|plasma membrane	galanin receptor activity				0						CTGCTCTTCTCCGGGCCCTAC	0.692000													14	35					0	0	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625693	74625693	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr17:74625693C>T	uc002jsh.2	-	2	406	c.232G>A	c.(232-234)GAG>AAG	p.E78K	ST6GALNAC1_uc002jsi.2_5'UTR|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	78	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						GGCACTGGCTCTGCATAGATG	0.567000													53	88					0	0	0	0
NFATC1	4772	broad.mit.edu	37	18	77208872	77208872	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr18:77208872C>T	uc010xfg.1	+	4	1930	c.1477C>T	c.(1477-1479)CAG>TAG	p.Q493*	NFATC1_uc002lnc.1_Nonsense_Mutation_p.Q493*|NFATC1_uc010xff.1_Nonsense_Mutation_p.Q493*|NFATC1_uc002lnd.2_Nonsense_Mutation_p.Q493*|NFATC1_uc002lne.2_Nonsense_Mutation_p.Q21*|NFATC1_uc010xfh.1_Nonsense_Mutation_p.Q493*|NFATC1_uc010xfi.1_Nonsense_Mutation_p.Q480*|NFATC1_uc010xfj.1_Nonsense_Mutation_p.Q21*|NFATC1_uc002lnf.2_Nonsense_Mutation_p.Q480*|NFATC1_uc002lng.2_Nonsense_Mutation_p.Q480*|NFATC1_uc010xfk.1_Nonsense_Mutation_p.Q480*	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	493	RHD.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CGCCTTCTACCAGGTGCACCG	0.622000													18	13					0	0	0	0
KIAA1543	57662	broad.mit.edu	37	19	7677766	7677766	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr19:7677766G>A	uc002mgv.3	+	11	2488	c.2387G>A	c.(2386-2388)AGG>AAG	p.R796K	KIAA1543_uc002mgu.3_Missense_Mutation_p.R823K|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	796	Pro-rich.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CCCTTGACCAGGGTGCTTACG	0.726000													3	8					0	0	0	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408000													3	50					0	0	0	0
FBXW9	84261	broad.mit.edu	37	19	12807411	12807411	+	5'Flank	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr19:12807411G>A	uc010dyx.2	-						FBXW9_uc010xmp.1_RNA|FBXW9_uc002mum.1_5'UTR|FBXW9_uc002mun.1_5'UTR	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9								protein binding			ovary(1)	1						CCGGGTGGGCGCTGCCGGCCT	0.647000													19	34					0	0	0	0
ZNF331	55422	broad.mit.edu	37	19	54080933	54080933	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr19:54080933C>T	uc002qbx.1	+	7	2553	c.1119C>T	c.(1117-1119)CAC>CAT	p.H373H	ZNF331_uc002qby.1_Silent_p.H373H|ZNF331_uc002qbz.1_Silent_p.H373H|ZNF331_uc002qca.1_Silent_p.H373H|ZNF331_uc010eqr.1_Silent_p.H373H|ZNF331_uc002qcb.1_Silent_p.H373H|ZNF331_uc002qcc.1_Silent_p.H373H|ZNF331_uc002qcd.1_Silent_p.H373H	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TCACTCAGCACGAGAGAATCC	0.498000			T	?	follicular thyroid adenoma								7	39					0	0	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765360	18765360	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:18765360G>A	uc002rcz.2	-	6	1169	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	NT5C1B_uc002rcy.2_Silent_p.F355F|NT5C1B_uc010exr.2_Silent_p.F297F|NT5C1B_uc010yju.1_Silent_p.F295F|NT5C1B_uc002rda.2_Silent_p.F295F|NT5C1B_uc010yjv.1_Silent_p.F372F|NT5C1B_uc010yjw.1_Silent_p.F338F|NT5C1B_uc010exs.2_Silent_p.F357F|NT5C1B_uc002rdb.1_Silent_p.F147F	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	355					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				ATACCTTGACGAAGCGGAACG	0.572000													29	67					0	0	0	0
TP53I3	9540	broad.mit.edu	37	2	24302332	24302332	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:24302332C>T	uc002rey.1	-	5	858	c.798G>A	c.(796-798)CTG>CTA	p.L266L	LOC375190_uc002rew.2_Intron|TP53I3_uc002rex.1_Intron|TP53I3_uc002rez.1_Silent_p.L266L|TP53I3_uc010ykk.1_Silent_p.L177L	NM_147184	NP_671713	Q53FA7	QORX_HUMAN	tumor protein p53 inducible protein 3	266	NADP.				induction of apoptosis by oxidative stress|NADP metabolic process		NADPH binding|NADPH:quinone reductase activity|protein homodimerization activity|quinone binding|zinc ion binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCTAGACCTCAGCAAACTGG	0.438000													35	90					0	0	0	0
DOK1	1796	broad.mit.edu	37	2	74784055	74784055	+	Silent	SNP	C	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:74784055C>A	uc002sms.2	+	5	1282	c.1260C>A	c.(1258-1260)CTC>CTA	p.L420L	LOXL3_uc002smp.1_5'Flank|LOXL3_uc002smq.1_5'Flank|LOXL3_uc010ffn.1_5'Flank|DOK1_uc002smr.2_Silent_p.L281L|DOK1_uc010ffo.2_Silent_p.L281L|DOK1_uc002smt.2_Silent_p.L206L|DOK1_uc002smu.2_Silent_p.L206L|DOK1_uc010yrz.1_Silent_p.L409L|DOK1_uc002smv.2_Silent_p.L281L|DOK1_uc002smw.1_Silent_p.L206L	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	420	Pro-rich.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						CAAAGCCCCTCCTTGCTCCCA	0.617000													81	147					1.16668e-32	1.2903e-32	1	0
NCK2	8440	broad.mit.edu	37	2	106498358	106498358	+	Silent	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:106498358A>G	uc002tdg.2	+	4	1243	c.801A>G	c.(799-801)CCA>CCG	p.P267P	NCK2_uc002tdh.2_Intron|NCK2_uc002tdi.2_Silent_p.P267P	NM_003581	NP_003572	O43639	NCK2_HUMAN	NCK adaptor protein 2 isoform A	267					axon guidance|epidermal growth factor receptor signaling pathway|negative regulation of cell proliferation|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of epidermal growth factor receptor activity|regulation of translation|signal complex assembly|T cell activation	cytosol|endoplasmic reticulum	cytoskeletal adaptor activity|receptor signaling complex scaffold activity			ovary(1)|lung(1)	2						CGCACGCCCCACAGATAAGCT	0.667000													19	32					0	0	0	0
KIF5C	3800	broad.mit.edu	37	2	149838001	149838001	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:149838001G>A	uc010zbu.1	+	14	1863	c.1495G>A	c.(1495-1497)GAC>AAC	p.D499N	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Missense_Mutation_p.D51N	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	499					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		TGTCAATTATGACCAGAAATC	0.532000													6	7					0	0	0	0
MARCH7	64844	broad.mit.edu	37	2	160615841	160615841	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:160615841G>A	uc002uax.2	+	7	2010	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K	MARCH7_uc010foq.2_Missense_Mutation_p.E630K|MARCH7_uc010zcn.1_Missense_Mutation_p.E574K|MARCH7_uc010for.2_Missense_Mutation_p.E592K|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	630							ligase activity|zinc ion binding				0						TCATGCAAATGAACAAGTTAG	0.353000													38	57					0	0	0	0
PDE11A	50940	broad.mit.edu	37	2	178592823	178592823	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:178592823G>A	uc002ulq.2	-	11	2184	c.1866C>T	c.(1864-1866)GCC>GCT	p.A622A	PDE11A_uc002ulp.2_Silent_p.A178A|PDE11A_uc002ulr.2_Silent_p.A372A|PDE11A_uc002uls.1_Silent_p.A264A|PDE11A_uc002ult.1_Silent_p.A372A|PDE11A_uc002ulu.1_Silent_p.A264A	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	622					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CTGTGATCATGGCATCAACGT	0.443000									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				23	38					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179529438	179529439	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:179529438_179529439GG>AT	uc010zfk.1	-	12	1130_1131	c.582_583CC>AT	c.(580-585)GTCCCT>GTATCT	p.P195S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTTTCAGGGACAATTTCTT	0.381000													9	56					0	0	0	0
RPE	6120	broad.mit.edu	37	2	210867428	210867428	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:210867428G>A	uc002vdn.2	+	1	48	c.43G>A	c.(43-45)GAC>AAC	p.D15N	RPE_uc002vdm.2_Missense_Mutation_p.D15N|RPE_uc002vdo.2_5'UTR|RPE_uc010zjf.1_Missense_Mutation_p.D15N|RPE_uc002vdp.2_5'UTR|RPE_uc010fup.2_5'UTR|RPE_uc002vdq.2_5'Flank	NM_199229	NP_954699	Q96AT9	RPE_HUMAN	ribulose-5-phosphate-3-epimerase isoform 1	15					pentose-phosphate shunt	cytosol	metal ion binding|protein homodimerization activity|ribulose-phosphate 3-epimerase activity				0				Epithelial(149;0.00241)|Lung(261;0.041)|all cancers(144;0.0429)|LUSC - Lung squamous cell carcinoma(261;0.0431)		CCTCAACAGCGACCTGGCCAA	0.617000													16	34					0	0	0	0
ZNF337	26152	broad.mit.edu	37	20	25657009	25657009	+	Silent	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr20:25657009G>C	uc002wva.2	-	4	1437	c.915C>G	c.(913-915)TCC>TCG	p.S305S	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Silent_p.S273S|ZNF337_uc002wvb.2_Silent_p.S305S|ZNF337_uc002wvc.2_Silent_p.S305S	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	305	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTTGTATGAGGACTTATCGT	0.473000													79	127					0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr20:29628263A>G	uc010ztl.1	+	3	207	c.175A>G	c.(175-177)ATT>GTT	p.I59V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.I11V					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TAGCTGCTTTATTAGATGCAA	0.363000													5	63					0	0	0	0
C20orf112	140688	broad.mit.edu	37	20	31062481	31062481	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr20:31062481G>A	uc002wxu.3	-	2	189	c.32C>T	c.(31-33)CCG>CTG	p.P11L	C20orf112_uc010gec.2_5'UTR|C20orf112_uc002wxv.3_Missense_Mutation_p.P11L|C20orf112_uc002wxw.1_RNA	NM_080616	NP_542183	Q96MY1	CT112_HUMAN	hypothetical protein LOC140688	11											0						GGCCAGGTGCGGGTCAGCTGA	0.597000													12	23					0	0	0	0
ZNF512B	57473	broad.mit.edu	37	20	62598782	62598782	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr20:62598782C>T	uc002yhl.1	-	3	270	c.216G>A	c.(214-216)AAG>AAA	p.K72K		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					GCCCCTTTTTCTTCCCTTCTG	0.632000													58	85					0	0	0	0
KRTAP27-1	643812	broad.mit.edu	37	21	31709410	31709410	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr21:31709410C>G	uc002ynx.1	-	1	603	c.577G>C	c.(577-579)GAA>CAA	p.E193Q		NM_001077711	NP_001071179	Q3LI81	KR271_HUMAN	keratin associated protein 27-1	193						intermediate filament				ovary(2)	2						CAAGTTGGTTCAACTCCTGGA	0.443000													23	24					0	0	0	0
LRRC3	81543	broad.mit.edu	37	21	45876816	45876816	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr21:45876816C>T	uc002zfa.2	+	2	582	c.289C>T	c.(289-291)CAC>TAC	p.H97Y		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	97	LRR 2.					integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		GGATCTGTCTCACAACGCCAT	0.662000													23	46					0	0	0	0
PPIL2	23759	broad.mit.edu	37	22	22049338	22049338	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr22:22049338A>T	uc010gtj.1	+	19	1561	c.1445A>T	c.(1444-1446)AAG>ATG	p.K482M	PPIL2_uc002zvh.3_Missense_Mutation_p.K482M|PPIL2_uc002zvi.3_Missense_Mutation_p.K482M|PPIL2_uc002zvg.3_Missense_Mutation_p.K482M|PPIL2_uc011aij.1_Intron|PPIL2_uc002zvk.3_Missense_Mutation_p.K228M	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	482					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					GGCGTGGGCAAGTACATCAAC	0.647000													5	25					0	0	0	0
YPEL1	29799	broad.mit.edu	37	22	22057704	22057704	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr22:22057704G>A	uc002zvl.2	-	4	557	c.225C>T	c.(223-225)GCC>GCT	p.A75A	YPEL1_uc002zvm.2_RNA	NM_013313	NP_037445	O60688	YPEL1_HUMAN	yippee-like 1	75						nucleus					0	Colorectal(54;0.105)					AGTAGATGTCGGCAACCGCAT	0.642000													32	70					0	0	0	0
CELSR1	9620	broad.mit.edu	37	22	46776788	46776788	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr22:46776788G>C	uc003bhw.1	-	22	7153	c.7153C>G	c.(7153-7155)CCG>GCG	p.P2385A	CELSR1_uc011arc.1_Missense_Mutation_p.P706A	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2385	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CTCGGGAGCGGAGCCCCCTCG	0.627000													13	27					0	0	0	0
CRELD2	79174	broad.mit.edu	37	22	50319135	50319135	+	Silent	SNP	G	A	A	rs151259822		TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr22:50319135G>A	uc003bja.2	+	9	1074	c.939G>A	c.(937-939)GGG>GGA	p.G313G	CRELD2_uc010haj.2_Silent_p.G313G|CRELD2_uc010hal.2_Silent_p.G362G|CRELD2_uc010hak.2_Silent_p.G285G|CRELD2_uc010ham.2_Silent_p.G281G	NM_024324	NP_077300	Q6UXH1	CREL2_HUMAN	cysteine-rich with EGF-like domains 2 isoform b	313	EGF-like 2; calcium-binding (Potential).					endoplasmic reticulum|extracellular region	calcium ion binding				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.198)|LUAD - Lung adenocarcinoma(64;0.247)		ATACTCCAGGGAGCTACGTCT	0.507000													18	52					0	0	0	0
CRELD2	79174	broad.mit.edu	37	22	50319169	50319169	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr22:50319169G>A	uc003bja.2	+	9	1108	c.973G>A	c.(973-975)GAA>AAA	p.E325K	CRELD2_uc010haj.2_Missense_Mutation_p.E325K|CRELD2_uc010hal.2_Missense_Mutation_p.E374K|CRELD2_uc010hak.2_Missense_Mutation_p.E297K|CRELD2_uc010ham.2_Missense_Mutation_p.E293K	NM_024324	NP_077300	Q6UXH1	CREL2_HUMAN	cysteine-rich with EGF-like domains 2 isoform b	325	EGF-like 2; calcium-binding (Potential).					endoplasmic reticulum|extracellular region	calcium ion binding				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.198)|LUAD - Lung adenocarcinoma(64;0.247)		CGGCTTCGAAGAAACGGAAGA	0.587000													19	43					0	0	0	0
SETD5	55209	broad.mit.edu	37	3	9476528	9476528	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:9476528T>G	uc003brt.2	+	6	785	c.350T>G	c.(349-351)GTT>GGT	p.V117G	SETD5_uc003brs.1_Missense_Mutation_p.V98G|SETD5_uc003bru.2_Missense_Mutation_p.V6G|SETD5_uc003brv.2_Missense_Mutation_p.V6G	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	117										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGGGGGAAGGTTATTAGACTT	0.438000													9	31					0	0	0	0
CAMK1	8536	broad.mit.edu	37	3	9801205	9801205	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:9801205C>A	uc003bst.2	-	10	1057	c.879G>T	c.(877-879)CAG>CAT	p.Q293H	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_Intron|CAMK1_uc003bss.2_Missense_Mutation_p.Q67H|uc003bsv.1_5'Flank	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	293	Autoinhibitory domain (By similarity).				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		TCTTCTTGATCTGCTCACTCA	0.527000													7	240					5.18039e-06	5.34028e-06	1	0
WDR82	80335	broad.mit.edu	37	3	52292653	52292653	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:52292653C>A	uc003ddl.2	-	8	1093	c.811G>T	c.(811-813)GGT>TGT	p.G271C	WDR82_uc003ddk.2_Missense_Mutation_p.G196C	NM_025222	NP_079498	Q6UXN9	WDR82_HUMAN	WD repeat domain 82	271	WD 5.				histone H3-K4 methylation	chromatin|PTW/PP1 phosphatase complex|Set1C/COMPASS complex	protein binding				0				BRCA - Breast invasive adenocarcinoma(193;2.67e-05)|Kidney(197;0.00198)|KIRC - Kidney renal clear cell carcinoma(197;0.00223)|OV - Ovarian serous cystadenocarcinoma(275;0.246)		ACTTTTATACCGCTCTCTCCA	0.448000													8	48					0.00307968	0.00311701	1	0
KIAA1407	57577	broad.mit.edu	37	3	113684007	113684007	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:113684007C>T	uc003eax.2	-	17	2953	c.2806G>A	c.(2806-2808)GAA>AAA	p.E936K		NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	936										ovary(2)	2						CTGGCTCATTCGTTCACCAGA	0.438000													20	111					0	0	0	0
COX17	10063	broad.mit.edu	37	3	119396148	119396148	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:119396148G>C	uc003ecz.1	-	1	96	c.10C>G	c.(10-12)CTG>GTG	p.L4V		NM_005694	NP_005685	Q14061	COX17_HUMAN	COX17 homolog, cytochrome c oxidase assembly	4	Ala/Pro-rich.				copper ion transport|generation of precursor metabolites and energy	mitochondrial intermembrane space	copper chaperone activity				0				GBM - Glioblastoma multiforme(114;0.227)		GAGTCAACCAGACCCGGCATC	0.617000													6	21					0	0	0	0
SEMA5B	54437	broad.mit.edu	37	3	122629104	122629104	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:122629104G>A	uc003efz.1	-	23	3646	c.3342C>T	c.(3340-3342)TTC>TTT	p.F1114F	SEMA5B_uc011bju.1_Silent_p.F1020F|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003efy.1_Silent_p.F92F	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	1114	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCAATGGGTAGAAGTTGGCTC	0.537000													41	129					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124066089	124066089	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:124066089G>A	uc003ehg.2	+	10	1868	c.1741G>A	c.(1741-1743)GAT>AAT	p.D581N	KALRN_uc010hrv.1_Missense_Mutation_p.D581N|KALRN_uc003ehf.1_Missense_Mutation_p.D581N|KALRN_uc011bjy.1_Missense_Mutation_p.D581N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	581	Spectrin 3.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GAAGAGGCATGATGACTTTGA	0.413000													26	145					0	0	0	0
PEX5L	51555	broad.mit.edu	37	3	179597776	179597776	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:179597776G>A	uc003fki.1	-	5	576	c.446C>T	c.(445-447)ACG>ATG	p.T149M	PEX5L_uc011bqd.1_Missense_Mutation_p.T106M|PEX5L_uc011bqe.1_Translation_Start_Site|PEX5L_uc011bqf.1_Intron|PEX5L_uc003fkj.1_Missense_Mutation_p.T114M|PEX5L_uc010hxd.1_Missense_Mutation_p.T147M|PEX5L_uc011bqg.1_Missense_Mutation_p.T125M|PEX5L_uc011bqh.1_Missense_Mutation_p.T90M	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	149					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			CTCAGCATCCGTGCTGATGAG	0.517000													12	131					0	0	0	0
LOC220729	220729	broad.mit.edu	37	3	197346715	197346715	+	RNA	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:197346715C>T	uc011bug.1	-	5		c.561G>A			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_RNA					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TCAGGAGATCCAAGGCAAAAT	0.423000													5	38					0	0	0	0
LMLN	89782	broad.mit.edu	37	3	197751552	197751552	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr3:197751552G>A	uc011buo.1	+	14	1571	c.1549G>A	c.(1549-1551)GAA>AAA	p.E517K	LMLN_uc003fyt.2_Missense_Mutation_p.E502K|LMLN_uc010iar.2_Missense_Mutation_p.E554K|LMLN_uc010ias.2_Missense_Mutation_p.E465K|LMLN_uc003fyu.2_Missense_Mutation_p.E314K	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	517					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		CTATGGCGCTGAAAAGTATGG	0.393000													21	92					0	0	0	0
MAEA	10296	broad.mit.edu	37	4	1326563	1326563	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:1326563C>A	uc003gda.2	+	6	705	c.675C>A	c.(673-675)TTC>TTA	p.F225L	MAEA_uc003gdb.2_Missense_Mutation_p.F184L|MAEA_uc011bvb.1_Missense_Mutation_p.F157L|MAEA_uc003gdc.2_Missense_Mutation_p.Q159K|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Missense_Mutation_p.F224L|MAEA_uc011bvd.1_Missense_Mutation_p.F177L|MAEA_uc010ibt.2_Intron|MAEA_uc010ibu.2_RNA	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	225					cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			GAAAGCACTTCAGCCAAGCAG	0.428000													10	26					3.07112e-06	3.18557e-06	1	0
PCDH7	5099	broad.mit.edu	37	4	30723353	30723353	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:30723353C>T	uc003gsk.1	+	1	1317	c.309C>T	c.(307-309)TTC>TTT	p.F103F	PCDH7_uc011bxw.1_Silent_p.F103F|PCDH7_uc011bxx.1_Silent_p.F103F	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	103	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						AGATGATCTTCGACGAGAACG	0.602000													11	10					0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79403092	79403092	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:79403092G>A	uc003hlb.2	+	57	9018	c.8578G>A	c.(8578-8580)GAA>AAA	p.E2860K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2855	Calx-beta 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCGGAAGGTGGAATTTGGGCC	0.522000													50	43					0	0	0	0
AFF1	4299	broad.mit.edu	37	4	88047256	88047256	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:88047256C>T	uc003hqj.3	+	13	2965	c.2558C>T	c.(2557-2559)TCC>TTC	p.S853F	AFF1_uc011ccz.1_Missense_Mutation_p.S860F|AFF1_uc003hqk.3_Missense_Mutation_p.S853F|AFF1_uc011cda.1_Missense_Mutation_p.S491F	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	853						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		TCCAGGCCCTCCAGGCCCTCC	0.537000													50	69					0	0	0	0
AFF1	4299	broad.mit.edu	37	4	88047277	88047277	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:88047277C>T	uc003hqj.3	+	13	2986	c.2579C>T	c.(2578-2580)TCA>TTA	p.S860L	AFF1_uc011ccz.1_Missense_Mutation_p.S867L|AFF1_uc003hqk.3_Missense_Mutation_p.S860L|AFF1_uc011cda.1_Missense_Mutation_p.S498L	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	860						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		TCACAGTCCTCAAAGAAGGAA	0.552000													41	59					0	0	0	0
DDX60L	91351	broad.mit.edu	37	4	169383027	169383027	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:169383027C>T	uc003irq.3	-	5	650	c.429G>A	c.(427-429)CTG>CTA	p.L143L	DDX60L_uc003irr.1_Silent_p.L143L	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	143							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CTGAAACTATCAGAAAATACG	0.378000													4	13					0	0	0	0
DDX60L	91351	broad.mit.edu	37	4	169383170	169383170	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:169383170C>T	uc003irq.3	-	5	507	c.286G>A	c.(286-288)GAT>AAT	p.D96N	DDX60L_uc003irr.1_Missense_Mutation_p.D96N	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	96							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TCAGGAAAATCAAAATATGCA	0.348000													7	10					0	0	0	0
LIFR	3977	broad.mit.edu	37	5	38504091	38504091	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:38504091G>A	uc010ive.1	-	10	1756	c.1424C>T	c.(1423-1425)TCA>TTA	p.S475L	LIFR_uc003jli.2_Missense_Mutation_p.S475L	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	475	Extracellular (Potential).|Fibronectin type-III 3.				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CTCTTGTACTGAATTAGATTT	0.284000			T	PLAG1	salivary adenoma								33	53					0	0	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													3	10					0	0	0	0
DMXL1	1657	broad.mit.edu	37	5	118533530	118533530	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:118533530G>A	uc003ksd.2	+	32	7805	c.7624G>A	c.(7624-7626)GAA>AAA	p.E2542K	DMXL1_uc010jcl.1_Missense_Mutation_p.E2542K	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	2542										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		CCGACGACTTGAAATCCATGG	0.443000													70	73					0	0	0	0
GFRA3	2676	broad.mit.edu	37	5	137599972	137599972	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:137599972G>A	uc003lcn.2	-	2	497	c.357C>T	c.(355-357)ACC>ACT	p.T119T	GFRA3_uc003lco.2_Silent_p.T119T	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	119					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CACGGTGAACGGTCCAATAGA	0.552000													25	49					0	0	0	0
ECSCR	641700	broad.mit.edu	37	5	138842247	138842247	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:138842247G>A	uc011cze.1	-	1	74	c.9C>T	c.(7-9)ACC>ACT	p.T3T		NM_001077693	NP_001071161	Q19T08	ECSCR_HUMAN	endothelial cell-specific chemotaxis regulator	3					angiogenesis|cell differentiation|chemotaxis	integral to membrane|plasma membrane					0						TGGCTCCTGCGGTGCCCATGT	0.632000													5	7					0	0	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250408	140250408	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:140250408G>A	uc003lia.2	+	1	2578	c.1720G>A	c.(1720-1722)GGC>AGC	p.G574S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.G574S	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	574	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCGCGGGAGGCGCAGTTAA	0.667000													64	73					0	0	0	0
C5orf25	375484	broad.mit.edu	37	5	175740719	175740719	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:175740719T>C	uc003mds.3	+	7	2110	c.1703T>C	c.(1702-1704)CTT>CCT	p.L568P	C5orf25_uc003mdt.3_Missense_Mutation_p.L153P|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Missense_Mutation_p.L29P			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	568											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		GGGCGAGTCCTTTTCCTGCGT	0.488000													4	314					0	0	0	0
SLC35B3	51000	broad.mit.edu	37	6	8421006	8421006	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr6:8421006C>T	uc010joe.2	-	6	796	c.630G>A	c.(628-630)CTG>CTA	p.L210L	SLC35B3_uc003mya.2_Silent_p.L178L|SLC35B3_uc003myc.2_RNA|SLC35B3_uc003myb.2_Silent_p.L210L|SLC35B3_uc011did.1_Silent_p.L210L|SLC35B3_uc003myd.2_RNA	NM_001142541	NP_001136013	Q9H1N7	S35B3_HUMAN	solute carrier family 35, member B3	210	Helical; (Potential).				transmembrane transport	Golgi membrane|integral to membrane					0	Ovarian(93;0.0569)					TAAACCATATCAGGCCAAGGC	0.388000													37	111					0	0	0	0
NHLRC1	378884	broad.mit.edu	37	6	18122141	18122141	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr6:18122141C>G	uc003ncl.1	-	1	711	c.697G>C	c.(697-699)GAT>CAT	p.D233H		NM_198586	NP_940988	Q6VVB1	NHLC1_HUMAN	NHL repeat containing 1	233	NHL 3.		D -> A (in EPM2).		proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	endoplasmic reticulum|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.165)	all cancers(50;0.0451)|Epithelial(50;0.0493)			GCCTCCGCATCAGTTACCACA	0.542000													12	38					0	0	0	0
FTSJD2	23070	broad.mit.edu	37	6	37429416	37429416	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr6:37429416G>A	uc003ons.2	+	11	1440	c.1187G>A	c.(1186-1188)CGG>CAG	p.R396Q	FTSJD2_uc010jwu.2_Missense_Mutation_p.R340Q	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	396					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TCCATTGTCCGGACAGGTGAC	0.537000													3	74					0	0	0	0
GSTA2	2939	broad.mit.edu	37	6	52615381	52615381	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr6:52615381C>A	uc003pay.2	-	7	813	c.663G>T	c.(661-663)AGG>AGT	p.R221S		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	221					glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	TTTATTAAAACCTGAAAATCT	0.413000													8	101					1.11149e-13	1.20532e-13	1	0
DST	667	broad.mit.edu	37	6	56496810	56496810	+	Silent	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr6:56496810G>C	uc003pdf.2	-	28	3763	c.3735C>G	c.(3733-3735)CTC>CTG	p.L1245L	DST_uc003pcz.3_Silent_p.L1067L|DST_uc011dxj.1_Silent_p.L1096L|DST_uc011dxk.1_Silent_p.L1107L|DST_uc003pcy.3_Silent_p.L741L|DST_uc003pdb.2_Silent_p.L741L|DST_uc003pdc.3_Silent_p.L741L|DST_uc003pdd.3_Silent_p.L741L	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1067					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CAGAGATGTAGAGATTATAAA	0.348000													17	38					0	0	0	0
ACTB	60	broad.mit.edu	37	7	5568921	5568921	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:5568921G>C	uc003sos.3	-	2	270	c.234C>G	c.(232-234)AAC>AAG	p.N78K	ACTB_uc003sor.3_5'UTR|ACTB_uc003sot.3_Missense_Mutation_p.N78K|ACTB_uc003soq.3_5'UTR|ACTB_uc010ksy.2_Intron	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	78					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		TGTCGTCCCAGTTGGTGACGA	0.607000													33	48					0	0	0	0
ICA1	3382	broad.mit.edu	37	7	8196806	8196806	+	Silent	SNP	A	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:8196806A>T	uc003srm.2	-	8	811	c.744T>A	c.(742-744)ACT>ACA	p.T248T	ICA1_uc010ktr.2_Silent_p.T248T|ICA1_uc003srl.2_Silent_p.T236T|ICA1_uc003srn.3_Silent_p.T174T|ICA1_uc003srp.3_Silent_p.T247T|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Silent_p.T248T|ICA1_uc003srr.2_Silent_p.T247T|ICA1_uc003sro.3_Silent_p.T248T|ICA1_uc011jxg.1_Silent_p.T248T|ICA1_uc003srs.1_Silent_p.T248T	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	248	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		TGGCTGCCATAGTGTGAGAAG	0.398000													6	88					0	0	0	0
WBSCR17	64409	broad.mit.edu	37	7	70597882	70597882	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:70597882G>A	uc003tvy.2	+	1	94	c.94G>A	c.(94-96)GCG>ACG	p.A32T		NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	32	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CCGGCCCATCGCGGTGCGCAG	0.637000													9	16					0	0	0	0
NAPEPLD	222236	broad.mit.edu	37	7	102743916	102743916	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:102743916C>T	uc003vbc.2	-	5	1470	c.1142G>A	c.(1141-1143)GGA>GAA	p.G381E	NAPEPLD_uc003vbd.2_Missense_Mutation_p.G381E|NAPEPLD_uc011klj.1_Missense_Mutation_p.G454E|NAPEPLD_uc003vbe.2_RNA	NM_198990	NP_945341	Q6IQ20	NAPEP_HUMAN	N-acyl phosphatidylethanolamine phospholipase D	381					phospholipid catabolic process	membrane	metal ion binding			skin(1)	1						TCTTGATTCTCCATGCTTCAA	0.348000													29	59					0	0	0	0
HBP1	26959	broad.mit.edu	37	7	106826251	106826251	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:106826251C>G	uc003vdy.2	+	4	590	c.404C>G	c.(403-405)TCT>TGT	p.S135C	HBP1_uc011klv.1_Missense_Mutation_p.S145C|HBP1_uc003vdz.2_Missense_Mutation_p.S135C|HBP1_uc003vea.2_Missense_Mutation_p.S135C|HBP1_uc003veb.1_Missense_Mutation_p.S135C	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	135					cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						TTTAGATCATCTCCTGTACAC	0.393000													54	85					0	0	0	0
NRCAM	4897	broad.mit.edu	37	7	107880487	107880487	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:107880487T>C	uc003vfb.2	-	4	493	c.22A>G	c.(22-24)AAA>GAA	p.K8E	NRCAM_uc003vfc.2_Missense_Mutation_p.K8E|NRCAM_uc011kmk.1_Missense_Mutation_p.K3E|NRCAM_uc003vfd.2_Missense_Mutation_p.K3E|NRCAM_uc003vfe.2_Missense_Mutation_p.K3E	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	8					angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						CGCTTCTTTTTCGGCATTATT	0.418000													45	69					0	0	0	0
POT1	25913	broad.mit.edu	37	7	124481048	124481048	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:124481048C>T	uc003vlm.2	-	14	1949	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.E319K|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	450					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AGTAGACATTCATTTGAAAGC	0.269000													30	77					0	0	0	0
FAM71F1	84691	broad.mit.edu	37	7	128359080	128359081	+	Missense_Mutation	DNP	TC	AG	AG			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:128359080_128359081TC>AG	uc003vno.1	+	3	683_684	c.630_631TC>AG	c.(628-633)ATTCTT>ATAGTT	p.L211V	FAM71F1_uc010llo.1_Missense_Mutation_p.L112V|FAM71F1_uc011koq.1_Missense_Mutation_p.L103V|FAM71F1_uc003vnm.1_RNA|FAM71F1_uc003vnn.1_Missense_Mutation_p.L112V|FAM71F1_uc010llp.1_RNA|FAM71F1_uc003vnp.1_Missense_Mutation_p.L211V	NM_032599	NP_115988	Q96KD3	F71F1_HUMAN	testes development-related NYD-SP18	211										skin(1)	1						ACCCTAGGATTCTTGTCACGCA	0.540000													5	108					0	0	0	0
DENND2A	27147	broad.mit.edu	37	7	140266910	140266910	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr7:140266910T>A	uc010lnj.2	-	7	1900	c.1755A>T	c.(1753-1755)GAA>GAT	p.E585D	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.E585D|DENND2A_uc003vvw.2_Missense_Mutation_p.E585D|DENND2A_uc003vvx.2_Missense_Mutation_p.E585D	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	585	UDENN.									ovary(3)|breast(1)	4	Melanoma(164;0.00956)					GTTGGGTGAGTTCTGGCACGT	0.562000													6	5					0	0	0	0
UNC5D	137970	broad.mit.edu	37	8	35616853	35616853	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr8:35616853G>A	uc003xjr.1	+	14	2507	c.2179G>A	c.(2179-2181)GAA>AAA	p.E727K	UNC5D_uc003xjs.1_Missense_Mutation_p.E722K|UNC5D_uc003xju.1_Missense_Mutation_p.E303K	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	727	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GGTTTCAGATGAAAGGCATCA	0.378000													37	70					0	0	0	0
RUNX1T1	862	broad.mit.edu	37	8	93027012	93027012	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr8:93027012T>C	uc003yfd.2	-	3	347	c.263A>G	c.(262-264)AAT>AGT	p.N88S	RUNX1T1_uc003yfc.1_Missense_Mutation_p.N61S|RUNX1T1_uc003yfe.1_Missense_Mutation_p.N51S|RUNX1T1_uc010mao.2_Missense_Mutation_p.N61S|RUNX1T1_uc011lgi.1_Missense_Mutation_p.N99S|RUNX1T1_uc003yfh.1_Missense_Mutation_p.N51S|RUNX1T1_uc003yfb.1_Missense_Mutation_p.N51S|RUNX1T1_uc003yff.1_Missense_Mutation_p.N51S|RUNX1T1_uc003yfg.1_Missense_Mutation_p.N51S	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	88					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GGGGGCGCCATTCAAGGCTGT	0.517000													3	46					0	0	0	0
PLEC	5339	broad.mit.edu	37	8	144992204	144992204	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr8:144992204G>A	uc003zaf.1	-	32	12366	c.12196C>T	c.(12196-12198)CTG>TTG	p.L4066L	PLEC_uc003zab.1_Silent_p.L3929L|PLEC_uc003zac.1_Silent_p.L3933L|PLEC_uc003zad.2_Silent_p.L3929L|PLEC_uc003zae.1_Silent_p.L3897L|PLEC_uc003zag.1_Silent_p.L3907L|PLEC_uc003zah.2_Silent_p.L3915L|PLEC_uc003zaj.2_Silent_p.L3956L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4066	Plectin 22.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GTGCCTTCCAGGAACTTCTGC	0.642000													7	8					0	0	0	0
KIAA0020	9933	broad.mit.edu	37	9	2829887	2829887	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:2829887G>A	uc003zhp.1	-	8	835	c.739C>T	c.(739-741)CGG>TGG	p.R247W	KIAA0020_uc010mhc.1_Missense_Mutation_p.R246W|KIAA0020_uc003zhq.1_Missense_Mutation_p.R246W	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein	247	Pumilio 3.|PUM-HD.					endoplasmic reticulum|nucleolus	RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		TCCGCATGCCGCAGCATCTTC	0.438000													5	122					0	0	0	0
KIAA2026	158358	broad.mit.edu	37	9	5968103	5968103	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:5968103G>C	uc003zjq.3	-	3	2344	c.2128C>G	c.(2128-2130)CTT>GTT	p.L710V		NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	710	Lys-rich.									ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TTGAATGCAAGAGAATGAAGA	0.308000													3	6					0	0	0	0
KIAA2026	158358	broad.mit.edu	37	9	5968206	5968206	+	Silent	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:5968206G>A	uc003zjq.3	-	3	2241	c.2025C>T	c.(2023-2025)CTC>CTT	p.L675L		NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	675	Lys-rich.									ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TAGTTAGTTTGAGTTTCTTGT	0.333000													23	41					0	0	0	0
PTPRD	5789	broad.mit.edu	37	9	8484233	8484233	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:8484233G>A	uc003zkk.2	-	29	4010	c.3299C>T	c.(3298-3300)ACG>ATG	p.T1100M	PTPRD_uc003zkp.2_Missense_Mutation_p.T689M|PTPRD_uc003zkq.2_Missense_Mutation_p.T689M|PTPRD_uc003zkr.2_Missense_Mutation_p.T684M|PTPRD_uc003zks.2_Missense_Mutation_p.T679M|PTPRD_uc003zkl.2_Missense_Mutation_p.T1091M|PTPRD_uc003zkm.2_Missense_Mutation_p.T1087M|PTPRD_uc003zkn.2_Missense_Mutation_p.T689M|PTPRD_uc003zko.2_Missense_Mutation_p.T686M	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1100	Fibronectin type-III 8.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGTCTTTGCCGTGACCCTGTG	0.483000										TSP Lung(15;0.13)			24	49					0	0	0	0
DNAJA1	3301	broad.mit.edu	37	9	33030454	33030454	+	Silent	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:33030454A>G	uc003zsd.1	+	5	615	c.432A>G	c.(430-432)AAA>AAG	p.K144K	DNAJA1_uc011lnt.1_5'UTR|DNAJA1_uc003zse.1_Silent_p.K144K	NM_001539	NP_001530	P31689	DNJA1_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 1	144	CR-type.				protein folding|response to heat|response to unfolded protein	membrane	ATP binding|heat shock protein binding|low-density lipoprotein particle receptor binding|metal ion binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.102)		GAGGTAAGAAAGGAGCAGTAG	0.353000													11	8					0	0	0	0
RECK	8434	broad.mit.edu	37	9	36117110	36117110	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:36117110A>G	uc003zyv.2	+	17	2275	c.2189A>G	c.(2188-2190)GAG>GGG	p.E730G	RECK_uc003zyw.2_Missense_Mutation_p.E602G|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	730	Kazal-like 2.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			GACCACATGGAGCACAACAAT	0.453000													5	52					0	0	0	0
PTAR1	375743	broad.mit.edu	37	9	72338300	72338300	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:72338300C>G	uc004ahj.3	-	6	911	c.889G>C	c.(889-891)GAA>CAA	p.E297Q	PTAR1_uc004ahi.2_Missense_Mutation_p.E218Q	NM_001099666	NP_001093136	Q7Z6K3	PTAR1_HUMAN	protein prenyltransferase alpha subunit repeat	297	PFTA 5.				protein prenylation		protein prenyltransferase activity			central_nervous_system(1)	1						GTGCTGAATTCAACTTCTTCT	0.408000													59	90					0	0	0	0
LOC441455	441455	broad.mit.edu	37	9	99488410	99488410	+	RNA	SNP	G	A	A	rs138144503	by1000genomes	TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:99488410G>A	uc011luo.1	+	1		c.308G>A				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						GTCTCTTGTCGTTAGTCGGAC	0.443000													33	42					0	0	0	0
FAM125B	89853	broad.mit.edu	37	9	129157913	129157913	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:129157913C>T	uc004bqh.1	+	6	680	c.599C>T	c.(598-600)TCA>TTA	p.S200L	FAM125B_uc004bqg.1_Missense_Mutation_p.S200L|FAM125B_uc011lzy.1_Missense_Mutation_p.S185L|FAM125B_uc010mxd.2_Missense_Mutation_p.S193L|FAM125B_uc011lzz.1_Missense_Mutation_p.S193L	NM_033446	NP_258257	Q9H7P6	F125B_HUMAN	hypothetical protein LOC89853 isoform 1	200					protein transport	late endosome membrane					0						AATCATGACTCATCTCAACCC	0.532000													57	91					0	0	0	0
COL5A1	1289	broad.mit.edu	37	9	137734077	137734077	+	Silent	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:137734077C>T	uc004cfe.2	+	66	5827	c.5445C>T	c.(5443-5445)ATC>ATT	p.I1815I	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1815	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCGTGGACATCATGTTCAATG	0.582000													14	25					0	0	0	0
PGK1	5230	broad.mit.edu	37	X	77380864	77380864	+	Silent	SNP	G	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chrX:77380864G>T	uc004ecz.3	+	10	1327	c.1155G>T	c.(1153-1155)ACG>ACT	p.T385T	PGK1_uc010nlz.2_RNA|PGK1_uc011mqq.1_Silent_p.T357T	NM_000291	NP_000282	P00558	PGK1_HUMAN	phosphoglycerate kinase 1	385					gluconeogenesis|glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			upper_aerodigestive_tract(1)|ovary(1)	2						AATGGAACACGGAGGATAAAG	0.488000													44	20					4.44712e-29	4.88598e-29	1	0
CHM	1121	broad.mit.edu	37	X	85211360	85211360	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chrX:85211360C>T	uc004eet.2	-	8	994	c.964G>A	c.(964-966)GAA>AAA	p.E322K	CHM_uc011mqz.1_Missense_Mutation_p.E174K	NM_000390	NP_000381	P24386	RAE1_HUMAN	choroideremia isoform a	322					intracellular protein transport|protein geranylgeranylation|response to stimulus|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(1)	1		all_lung(315;5.41e-06)				TTTAAATATTCATAAAATGTG	0.333000													11	3					0	0	0	0
LOC643486	643486	broad.mit.edu	37	X	95592353	95592353	+	RNA	SNP	G	C	C			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chrX:95592353G>C	uc010nmx.2	-	1		c.549C>G				NR_003539				Homo sapiens cDNA FLJ42288 fis, clone TLIVE2006236.												0						TACGGTCTTTGAGAAACCAGA	0.388000													11	5					0	0	0	0
MPP1	4354	broad.mit.edu	37	X	154033630	154033630	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chrX:154033630C>T	uc004fmp.1	-	1	134	c.19G>A	c.(19-21)GAG>AAG	p.E7K	MPP1_uc010nvg.1_Missense_Mutation_p.E7K|MPP1_uc011mzv.1_5'UTR|MPP1_uc004fmq.1_5'UTR|MPP1_uc011mzw.1_Missense_Mutation_p.E7K|MPP1_uc010nvh.1_Missense_Mutation_p.E7K	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	7					regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CTCTCGCCCTCGCTCGCCTTG	0.662000													5	2					0	0	0	0
Unknown	0	broad.mit.edu	37	1	700532	700532	+	RNA	DEL	T	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:700532delT	uc001abo.2	-	7		c.1022delA								Homo sapiens cDNA clone IMAGE:4129277, partial cds.																		aaaaaaaaaaTTCCTTTGGGA	0.214													---	---	---							
Unknown	0	broad.mit.edu	37	1	113433616	113433616	+	IGR	DEL	T	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr1:113433616delT								FAM19A3 (163762 upstream) : SLC16A1 (20856 downstream)																							tattcacttattttttttttt	0.204													---	---	---							
Unknown	0	broad.mit.edu	37	10	43063100	43063100	+	IGR	DEL	G	-	-	rs34202394		TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr10:43063100delG								ZNF37B (14820 upstream) : ZNF33B (6533 downstream)																							TTTGGAGCCAGAAAAAAAAAA	0.219													---	---	---							
Unknown	0	broad.mit.edu	37	11	9682506	9682507	+	IGR	DEL	AA	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr11:9682506_9682507delAA								WEE1 (71195 upstream) : SWAP70 (3121 downstream)																							TCTGGGCTGTaaaaaaaaaaaa	0.233													---	---	---							
ANKRD13A	88455	broad.mit.edu	37	12	110463612	110463618	+	Frame_Shift_Del	DEL	AAAAAAG	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr12:110463612_110463618delAAAAAAG	uc001tpx.2	+	8	1126_1132	c.867_873delAAAAAAG	c.(865-873)GAAAAAAAGfs	p.E289fs	ANKRD13A_uc009zvl.1_RNA|ANKRD13A_uc010sxw.1_Frame_Shift_Del_p.E289fs|ANKRD13A_uc001tpy.2_5'UTR|ANKRD13A_uc001tpz.2_5'Flank	NM_033121	NP_149112	Q8IZ07	AN13A_HUMAN	ankyrin repeat domain 13	289_291											0						CCGAGGAGGAAAAAAAGAGATATAAAG	0.406													---	---	---							
Unknown	0	broad.mit.edu	37	15	45903012	45903012	+	IGR	DEL	T	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:45903012delT								PLDN (1104 upstream) : SQRDL (20334 downstream)																							TGAGAGATGCttttttttttt	0.244													---	---	---							
Unknown	0	broad.mit.edu	37	15	102299886	102299887	+	5'Flank	INS	-	G	G			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr15:102299886_102299887insG	uc002bzh.1	-						uc002bzk.2_5'Flank|uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cal.2_5'Flank|uc002cam.2_5'Flank|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank					DQ575740																		AACCTGTACTCGCGTCGGAACC	0.589													---	---	---							
SLC1A5	6510	broad.mit.edu	37	19	47282157	47282157	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr19:47282157delG	uc002pfs.2	-	5	1453	c.833delC	c.(832-834)CCTfs	p.P278fs	SLC1A5_uc010xyh.1_Frame_Shift_Del_p.P76fs|SLC1A5_uc002pfq.2_Frame_Shift_Del_p.P102fs|SLC1A5_uc002pfr.2_Frame_Shift_Del_p.P50fs	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	278	Helical; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	GATGCCCACAGGGGCGTACCT	0.582													---	---	---							
Unknown	0	broad.mit.edu	37	2	64602807	64602809	+	IGR	DEL	ACC	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:64602807_64602809delACC								PELI1 (231202 upstream) : HSPC159 (78518 downstream)																							ccataccactaccaccaccacca	0.025													---	---	---							
ARID5A	10865	broad.mit.edu	37	2	97215191	97215195	+	Frame_Shift_Del	DEL	AGCAG	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr2:97215191_97215195delAGCAG	uc002swe.2	+	3	354_358	c.254_258delAGCAG	c.(253-258)AAGCAGfs	p.K85fs	ARID5A_uc010yuq.1_5'UTR|ARID5A_uc002swf.2_Intron|ARID5A_uc002swg.2_Intron	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	85_86	ARID.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						CTCGGCTTCAAGCAGAGTGCGTCCC	0.590													---	---	---							
Unknown	0	broad.mit.edu	37	4	3619299	3619300	+	IGR	INS	-	CCTT	CCTT	rs144281803	by1000genomes	TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr4:3619299_3619300insCCTT								LRPAP1 (85075 upstream) : ADRA2C (148775 downstream)																							tccttcccctcccttcttccct	0.000													---	---	---							
FBLL1	345630	broad.mit.edu	37	5	167956924	167956924	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr5:167956924delG	uc011dep.1	+	1	343	c.130delG	c.(130-132)GAGfs	p.E44fs		NR_024356				RecName: Full=rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1;          EC=2.1.1.-;												0						CACGGTGACCGAGGGCGGCGT	0.677													---	---	---							
Unknown	0	broad.mit.edu	37	9	44109097	44109098	+	IGR	INS	-	A	A			TCGA-CR-6480-01A-11D-1870-08	TCGA-CR-6480-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	7ee5501e-5463-4481-b798-3d23bfb4f113	9c2c99b3-9669-4bf2-81cc-d82c9611ea2f	g.chr9:44109097_44109098insA								FAM75A6 (478367 upstream) : FAM27C (881138 downstream)																							ATAAAGGTCTCAAAAATCCAGA	0.347													---	---	---							
