Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
COL24A1	255631	genome.wustl.edu	37	1	86282491	86282491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.P1311T	0.999	396	0.3%	306	41.8%	1	0%	benign(0.016)	tolerated(0.1)	neutral(0.287)	HMMPfam_Collagen
CELSR2	1952	genome.wustl.edu	37	1	109793836	109793836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.R379W	0.974	113	0.9%	107	35.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ATXN7L2	127002	genome.wustl.edu	37	1	110031580	110031580	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153340.4	+1	validated	p.S299R	1.000	38	0%	30	60%	5	40%	possibly_damaging(0.916)	tolerated(0.34)	neutral(0.390)	NULL
AP4B1	10717	genome.wustl.edu	37	1	114438527	114438527	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006594.2	-1	validated	p.P548	0.947	230	0%	179	35.2%	43	37.2%	-	-	-	superfamily_ARM-type_fold
VPS45	11311	genome.wustl.edu	37	1	150049304	150049304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007259.3	+1	reviewed	p.V191I	1.000	217	0%	211	23.2%	25	20%	benign(0.076)	tolerated(0.48)	neutral(0.016)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
PI4KB	5298	genome.wustl.edu	37	1	151271406	151271406	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002651.1	-1	provisional	p.L643	0.946	166	0%	156	30.1%	86	20.9%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
SPTA1	6708	genome.wustl.edu	37	1	158631190	158631190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.L825R	1.000	390	0%	444	25.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SHCBP1L	81626	genome.wustl.edu	37	1	182909541	182909541	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030933.2	-1	validated	p.V231	0.995	250	0.4%	265	50.9%	0	-	-	-	-	NULL
B3GALT2	8707	genome.wustl.edu	37	1	193149790	193149790	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003783.3	-1	reviewed	p.D301	0.999	392	0%	380	21.8%	0	-	-	-	-	HMMPfam_Galactosyl_T
RYR2	6262	genome.wustl.edu	37	1	237829879	237829879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R2835K	1.000	248	0%	213	29.1%	0	-	benign(0.307)	-	-	HMMPfam_RyR
VIT	5212	genome.wustl.edu	37	2	37035901	37035901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053276.3	+1	validated	p.R559Q	1.000	105	0%	120	35.8%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
NPAS2	4862	genome.wustl.edu	37	2	101609882	101609882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002518.3	+1	reviewed	p.V729I	0.279	39	0%	32	34.4%	39	25.6%	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167055541	167055541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.A1859S	0.993	344	0%	221	39.8%	0	-	benign(0.036)	tolerated(0.44)	neutral(0.015)	NULL
TTN	7273	genome.wustl.edu	37	2	179393359	179393359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Q33137K	1.000	263	0%	245	38.4%	0	-	possibly_damaging(0.448)	-	-	HMMPfam_I-set
TNS1	7145	genome.wustl.edu	37	2	218686568	218686568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.T1052N	0.014	24	0%	37	51.4%	73	0%	benign(0.067)	deleterious(0.04)	neutral(0.353)	NULL
PTMA	5757	genome.wustl.edu	37	2	232577526	232577539	+	Frame_Shift_Del	DEL	GATACCAAGAAGCA	GATACCAAGAAGCA	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	GATACCAAGAAGCA	GATACCAAGAAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099285.1	+1	validated	p.D101fs	0.997:0.999:0.976:0.989:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Prothymosin
ZFYVE20	64145	genome.wustl.edu	37	3	15124031	15124031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022340.2	-1	validated	p.R228Q	1.000	168	0.6%	200	38.5%	4	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	byCluster	TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S37F	1.000	147	0%	84	40.5%	100	22%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52398698	52398698	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.S1763	0.597	129	0%	126	34.1%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
PRR23A	729627	genome.wustl.edu	37	3	138724396	138724396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134659.1	-1	validated	p.R239C	0.000	81	0%	63	55.6%	0	-	unknown(0)	tolerated(0.14)	-	HMMPfam_DUF2476
FAT1	2195	genome.wustl.edu	37	4	187530956	187530956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.T3356M	0.657	228	0%	182	35.2%	15	13.3%	benign(0.255)	tolerated(0.08)	neutral(0.327)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
AMACR	23600	genome.wustl.edu	37	5	33998866	33998866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014324.5	-1	reviewed	p.P207S	0.987	245	0.4%	186	36.6%	8	25%	benign(0.359)	deleterious(0)	deleterious(0.558)	HMMPfam_CoA_transf_3,superfamily_CoA-transferase family III (CaiB/BaiF)
GAPT	202309	genome.wustl.edu	37	5	57790557	57790557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152687.2	+1	provisional	p.R65H	0.000	180	0%	152	43.4%	1	0%	benign(0.002)	tolerated(0.57)	neutral(0.006)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589588	67589590	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.E451in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589591	67589591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.Y452H	1.000	251	0%	162	35.2%	37	0%	probably_damaging(0.988)	tolerated(0.08)	deleterious(0.738)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591259	67591261	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.K587in_frame_del	1.000:0.945:1.000	-	-	-	-	-	-	-	-	-	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74408374	74408375	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.L1345fs	0.024:0.000	-	-	-	-	-	-	-	-	-	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74408388	74408388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.E1341G	1.000	590	0%	471	29.7%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
F2RL2	2151	genome.wustl.edu	37	5	75913480	75913480	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004101.2	-1	reviewed	p.S351T	1.000	427	0%	338	35.5%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PCDHA8	56140	genome.wustl.edu	37	5	140222407	140222407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.E501K	1.000	32	0%	29	34.5%	0	-	benign(0.425)	tolerated(0.26)	neutral(0.172)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140223137	140223137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.A744V	0.021	78	0%	116	30.2%	0	-	possibly_damaging(0.732)	tolerated(0.13)	deleterious(0.520)	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156736774	156736774	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037332.2	+1	validated	p.F308	1.000	164	0%	181	36.5%	6	50%	-	-	-	HMMPfam_FragX_IP
PACSIN1	29993	genome.wustl.edu	37	6	34497235	34497235	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020804.2	+1	validated	p.E174fs	1.000	-	-	-	-	-	-	-	-	-	NULL
NT5E	4907	genome.wustl.edu	37	6	86200337	86200337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002526.2	+1	validated	p.R441H	0.925	105	0%	107	41.1%	41	17%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C
DCBLD1	285761	genome.wustl.edu	37	6	117862090	117862090	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173674.1	+1	provisional	p.S420*	0.930	168	0%	203	57.1%	3	66.6%	-	-	-	NULL
PDE10A	10846	genome.wustl.edu	37	6	165862455	165862455	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130690.1	-1	validated	p.A119	1.000	381	0%	319	56.1%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
MMD2	221938	genome.wustl.edu	37	7	4949408	4949408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000406755	-1	known	p.A180V	0.001	23	0%	26	38.5%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_HlyIII
EMID2	136227	genome.wustl.edu	37	7	101188667	101188667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397927	+1	known	p.R251H	1.000	35	0%	25	40%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Collagen
NPBWR1	2831	genome.wustl.edu	37	8	53852713	53852713	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005285.3	+1	validated	p.A82	0.949	33	0%	58	37.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LRRC69	100130742	genome.wustl.edu	37	8	92212965	92212965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129890.1	+1	provisional	p.G293E	0.781	456	0%	350	32.9%	0	-	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	NULL
FZD6	8323	genome.wustl.edu	37	8	104337272	104337272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003506.3	+1	reviewed	p.R313I	1.000	486	0%	407	37.1%	14	21.4%	probably_damaging(0.983)	tolerated(0.27)	neutral(0.463)	HMMPfam_Frizzled
CNTFR	1271	genome.wustl.edu	37	9	34557952	34557952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000351266	-1	known	p.R117H	1.000	173	0%	126	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Fibronectin type III
KIAA1217	56243	genome.wustl.edu	37	10	24762699	24762699	+	Silent	SNP	G	G	A	rs140749126	by1000genomes	TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.L463	1.000	61	0%	56	35.7%	12	0%	-	-	-	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30728035	30728035	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005204.2	+1	reviewed	p.N56	0.121	186	0%	204	50%	20	45%	-	-	-	NULL
TACR2	6865	genome.wustl.edu	37	10	71164742	71164742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001057.2	-1	validated	p.T346M	0.000	327	0.3%	354	30.2%	11	0%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
SAMD8	142891	genome.wustl.edu	37	10	76924477	76924479	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144660.2	+1	validated	p.L221in_frame_del	1.000:0.982:1.000	-	-	-	-	-	-	-	-	-	NULL
SORCS3	22986	genome.wustl.edu	37	10	107022089	107022089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014978.1	+1	reviewed	p.R1148S	1.000	185	0%	211	29.9%	0	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	NULL
GPR26	2849	genome.wustl.edu	37	10	125426295	125426295	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153442.3	+1	validated	p.A124	0.998	7	0.000	9	0.778	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
EBF3	253738	genome.wustl.edu	37	10	131665496	131665496	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005463.1	-1	validated	p.P307	0.919	218	0%	251	25.1%	1	0%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
E2F8	79733	genome.wustl.edu	37	11	19251391	19251391	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024680.2	-1	validated	p.P501	1.000	148	0%	125	48%	2	100%	-	-	-	NULL
OR5AS1	219447	genome.wustl.edu	37	11	55798480	55798480	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001921.1	+1	provisional	p.Q196E	0.343	488	0%	345	34.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
RPS6KB2	6199	genome.wustl.edu	37	11	67201701	67201701	+	Silent	SNP	C	C	T	rs55850698		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003952.2	+1	reviewed	p.D334	0.062	132	0%	136	32.4%	88	38.6%	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
TECTA	7007	genome.wustl.edu	37	11	121016604	121016604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.S1295F	1.000	58	0%	75	28%	1	0%	benign(0.235)	tolerated(0.44)	neutral(0.036)	HMMPfam_C8
ITPR2	3709	genome.wustl.edu	37	12	26714873	26714873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.G1548V	0.941	132	0%	104	35.6%	2	50%	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	NULL
OR10A7	121364	genome.wustl.edu	37	12	55615173	55615173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005280.1	+1	provisional	p.R122H	1.000	415	0.2%	299	36.1%	0	-	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SARNP	84324	genome.wustl.edu	37	12	56197481	56197481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033082.3	-1	reviewed	p.R23L	1.000	367	0%	284	33.1%	116	38.7%	benign(0.073)	deleterious(0)	neutral(0.450)	HMMPfam_SAP,HMMSmart_SM00513,superfamily_SAP domain
MON2	23041	genome.wustl.edu	37	12	62943446	62943446	+	Splice_Site	SNP	A	A	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	e23-2	1.000	362	0%	262	38.2%	0	-	-	-	-	-
PTPRB	5787	genome.wustl.edu	37	12	70928295	70928295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.G2114D	0.054	92	0%	83	36.1%	27	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MIR619	693204	genome.wustl.edu	37	12	109230781	109230781	+	RNA	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384890	-1	known	NULL	0.053	26	0%	24	45.8%	0	-	-	-	-	-
SETD1B	23067	genome.wustl.edu	37	12	122268086	122268086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.E1905K	1.000	102	0%	64	35.9%	17	41.1%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
TMEM132B	114795	genome.wustl.edu	37	12	125834404	125834404	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.T153	0.000	154	0.6%	113	33.6%	0	-	-	-	-	NULL
RNF17	56163	genome.wustl.edu	37	13	25444818	25444818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.A1463V	0.765	376	0%	276	44.6%	0	-	benign(0.02)	tolerated(0.48)	neutral(0.011)	HMMPfam_TUDOR
MYCBP2	23077	genome.wustl.edu	37	13	77743789	77743789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.I1914T	1.000	260	0%	148	35.1%	2	50%	probably_damaging(0.959)	tolerated(0.3)	neutral(0.431)	NULL
GPC5	2262	genome.wustl.edu	37	13	92797173	92797173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004466.4	+1	reviewed	p.C498G	1.000	531	0%	388	34.8%	0	-	possibly_damaging(0.832)	tolerated(0.3)	neutral(0.346)	HMMPfam_Glypican
MIR543	100126335	genome.wustl.edu	37	14	101498326	101498326	+	RNA	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390751	+1	known	NULL	0.993	478	0%	406	40.4%	0	-	-	-	-	-
NTHL1	4913	genome.wustl.edu	37	16	2093596	2093602	+	Frame_Shift_Del	DEL	AGCCATA	AGCCATA	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	AGCCATA	AGCCATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002528.5	-1	reviewed	p.M226fs	0.457:0.975:1.000:1.000:1.000:1.000:0.989	-	-	-	-	-	-	-	-	-	HMMPfam_HhH-GPD,HMMSmart_ENDO3c,PatternScan_ENDONUCLEASE_III_2,superfamily_DNA_glycsylse
ZNF174	7727	genome.wustl.edu	37	16	3458725	3458725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003450.2	+1	validated	p.H344Y	1.000	143	0%	114	39.5%	10	10%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLX4	84464	genome.wustl.edu	37	16	3633501	3633501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.R1584C	1.000	37	0%	49	40.8%	6	50%	unknown(0)	deleterious(0)	-	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9858337	9858337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.R1022C	1.000	140	0%	117	36.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NMDAR2_C
ARMC5	79798	genome.wustl.edu	37	16	31473964	31473964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105247.1	+1	validated	p.R366W	0.998	144	0%	115	36.5%	15	20%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00185,superfamily_ARM repeat
YWHAE	7531	genome.wustl.edu	37	17	1303460	1303460	+	RNA	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024058.1	-1	reviewed	NULL	1.000	30	0%	37	40.5%	130	32.3%	-	-	-	-
PRPF8	10594	genome.wustl.edu	37	17	1559852	1559854	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.HL1875in_frame_delQ	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PITPNM3	83394	genome.wustl.edu	37	17	6371605	6371605	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031220.3	-1	reviewed	p.A610	0.000	78	0%	69	30.4%	2	50%	-	-	-	NULL
ALOXE3	59344	genome.wustl.edu	37	17	8007447	8007447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021628.2	-1	reviewed	p.V591L	0.994	136	0%	206	40.8%	0	-	benign(0.334)	tolerated(0.07)	neutral(0.424)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ARHGEF15	22899	genome.wustl.edu	37	17	8215700	8215700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173728.2	+1	reviewed	p.R115W	0.477	103	0%	103	35.9%	11	0%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
SPOP	8405	genome.wustl.edu	37	17	47679362	47679362	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007226.1	-1	reviewed	p.L282R	1.000	135	0%	107	32.7%	34	20.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
SPOP	8405	genome.wustl.edu	37	17	47699332	47699332	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007226.1	-1	reviewed	p.S59*	1.000	208	0%	190	38.4%	23	4.3%	-	-	-	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
EME1	146956	genome.wustl.edu	37	17	48456818	48456818	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510246	+1	known	p.G224S	1.000	155	0%	126	38.1%	9	77.7%	-	-	-	HMMPfam_ERCC4
DLGAP1	9229	genome.wustl.edu	37	18	3879682	3879682	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004746.2	-1	provisional	p.E129	1.000	15	0%	24	45.8%	0	-	-	-	-	NULL
SOGA2	23255	genome.wustl.edu	37	18	8720381	8720381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.V82L	1.000	162	0%	94	35.1%	0	-	possibly_damaging(0.653)	deleterious(0.05)	deleterious(0.575)	NULL
DCC	1630	genome.wustl.edu	37	18	50994264	50994264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.G1207V	1.000	221	0%	124	33.9%	0	-	benign(0.194)	deleterious(0.01)	neutral(0.424)	HMMPfam_Neogenin_C
PIAS4	51588	genome.wustl.edu	37	19	4013221	4013221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015897.2	+1	provisional	p.V110M	0.992	30	0%	35	31.4%	17	58.8%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
ENSG00000182315	0	genome.wustl.edu	37	19	7056547	7056547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333843	-1	known	p.P138L	0.000	154	0%	184	13.6%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
ZNF607	84775	genome.wustl.edu	37	19	38189791	38189796	+	In_Frame_Del	DEL	ATATTT	ATATTT	-	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	ATATTT	ATATTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032689.4	-1	validated	p.QNI412in_frame_delH	0.898:0.894:0.902:0.922:0.926:0.925	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38385359	38385359	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.Y289*	0.000	50	0%	36	44.4%	0	-	-	-	-	superfamily_WD40 repeat-like
EPN1	29924	genome.wustl.edu	37	19	56190212	56190212	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130071.1	+1	validated	p.H184	0.990	88	0%	62	38.7%	151	31.7%	-	-	-	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
SERINC3	10955	genome.wustl.edu	37	20	43141461	43141461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006811.2	-1	validated	p.R126G	0.984	437	0%	355	29.3%	38	5.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serinc
CBR1	873	genome.wustl.edu	37	21	37444822	37444822	+	Missense_Mutation	SNP	G	G	A	rs146559297	by1000genomes	TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001757.2	+1	reviewed	p.R159H	0.996	123	0%	79	36.7%	35	0%	benign(0.005)	tolerated(0.42)	neutral(0.014)	superfamily_NAD(P)-binding Rossmann-fold domains
PPIL2	23759	genome.wustl.edu	37	22	22043055	22043055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148176.2	+1	reviewed	p.D352	0.931	65	0%	68	10.3%	33	12.1%	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
ENSG00000198888	0	genome.wustl.edu	37	MT	3380	3380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.R25Q	NULL	3	0.000	29	0.793	8036	53.2%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_NADHdh
GPR143	4935	genome.wustl.edu	37	X	9728836	9728836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000273.2	-1	reviewed	p.G114E	0.041	196	0%	155	38.7%	1	0%	possibly_damaging(0.847)	tolerated(0.36)	neutral(0.345)	HMMPfam_Ocular_alb
FAM47A	158724	genome.wustl.edu	37	X	34148801	34148801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.P532L	0.001	90	2.2%	99	28.3%	0	-	possibly_damaging(0.877)	deleterious(0.01)	deleterious(0.747)	NULL
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.N1459S	1.000	158	0%	160	44.4%	13	61.5%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Ankyrin repeat
MED12	9968	genome.wustl.edu	37	X	70346290	70346290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.E881*	1.000	367	0%	335	40.6%	18	0%	-	-	-	NULL
POU3F4	5456	genome.wustl.edu	37	X	82763622	82763622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.R97H	1.000	28	0%	35	42.9%	0	-	benign(0.009)	tolerated(0.07)	neutral(0.320)	NULL
ZNF449	203523	genome.wustl.edu	37	X	134494252	134494252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152695.5	+1	reviewed	p.E270*	0.785	23	0%	31	35.5%	1	0%	-	-	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144904103	144904103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.V54I	0.999	289	0%	230	34.3%	0	-	benign(0.003)	tolerated(0.91)	-	HMMSmart_SM00013,superfamily_L domain-like
PRRG3	79057	genome.wustl.edu	37	X	150868655	150868655	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZQ-01A-11D-A122-09	TCGA-D1-A0ZQ-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370354	+1	known	p.L73	0.017	56	0%	52	34.6%	0	-	-	-	-	NULL
