Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MIR429	554210	genome.wustl.edu	37	1	1104386	1104386	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362106	+1	known	NULL	0.793	33	0%	24	45.8%	12	58.3%	-	-	-	-
CPSF3L	54973	genome.wustl.edu	37	1	1247987	1247987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017871.4	-1	validated	p.R463Q	1.000	25	0.000	9	0.444	128	46%	benign(0.057)	tolerated(0.26)	neutral(0.038)	NULL
ATAD3B	83858	genome.wustl.edu	37	1	1425945	1425945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031921.4	+1	provisional	p.R503H	1.000	152	0%	102	59.8%	26	46.1%	possibly_damaging(0.639)	deleterious(0.05)	deleterious(0.569)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
NADK	65220	genome.wustl.edu	37	1	1685554	1685554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023018.3	-1	validated	p.T346M	0.997	35	0%	25	48%	84	34.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)
TNFRSF14	8764	genome.wustl.edu	37	1	2493136	2493136	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003820.2	+1	reviewed	p.A192	0.000	72	0%	52	53.8%	25	40%	-	-	-	NULL
PRDM16	63976	genome.wustl.edu	37	1	3328643	3328643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.D628N	1.000	29	0%	14	64.3%	10	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
MEGF6	1953	genome.wustl.edu	37	1	3416453	3416453	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001409.3	-1	validated	p.Q915*	0.043	11	0.000	8	0.625	6	16.6%	-	-	-	HMMSmart_SM00181,superfamily_EGF/Laminin
CCDC27	148870	genome.wustl.edu	37	1	3670801	3670801	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152492.2	+1	validated	p.H146	0.000	78	0%	39	61.5%	0	-	-	-	-	NULL
CCDC27	148870	genome.wustl.edu	37	1	3680369	3680369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152492.2	+1	validated	p.R474Q	0.991	37	0%	23	60.9%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
LRRC47	57470	genome.wustl.edu	37	1	3703550	3703550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020710.2	-1	validated	p.V314I	0.108	104	0%	55	43.6%	62	45.1%	benign(0.113)	tolerated(0.74)	neutral(0.010)	NULL
CHD5	26038	genome.wustl.edu	37	1	6214772	6214772	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015557.1	-1	provisional	p.P231	0.987	23	0%	19	52.6%	0	-	-	-	-	NULL
ICMT	23463	genome.wustl.edu	37	1	6285282	6285282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012405.3	-1	reviewed	p.L238P	0.969	95	0%	77	45.5%	66	53%	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	HMMPfam_ICMT
DNAJC11	55735	genome.wustl.edu	37	1	6705992	6705992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.R251*	1.000	170	0%	121	44.6%	39	12.8%	-	-	-	NULL
PER3	8863	genome.wustl.edu	37	1	7887247	7887247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016831.1	+1	reviewed	p.P745L	0.017	14	0%	13	46.2%	4	25%	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
RERE	473	genome.wustl.edu	37	1	8419867	8419867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.R1192Q	1.000	51	5.9%	34	20.6%	36	5.5%	possibly_damaging(0.946)	tolerated(0.17)	neutral(0.449)	HMMPfam_Atrophin-1
RERE	473	genome.wustl.edu	37	1	8419868	8419868	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.R1192	1.000	50	6%	33	24.2%	36	5.5%	-	-	-	HMMPfam_Atrophin-1
RERE	473	genome.wustl.edu	37	1	8422820	8422820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.S609G	1.000	152	0%	121	47.1%	33	48.4%	unknown(0)	tolerated(0.16)	-	HMMPfam_Atrophin-1
CA6	765	genome.wustl.edu	37	1	9034427	9034427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377436	+1	known	p.R289H	0.000	11	0.000	6	0.833	0	-	benign(0.356)	tolerated(0.15)	neutral(0.354)	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9833397	9833397	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.N49	0.564	329	0%	207	39.6%	19	47.3%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
KIF1B	23095	genome.wustl.edu	37	1	10338058	10338058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.A345V	1.000	185	0.5%	131	45%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
MASP2	10747	genome.wustl.edu	37	1	11094907	11094907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006610.2	-1	reviewed	p.D355E	0.882	118	0%	68	54.4%	0	-	benign(0.008)	tolerated(0.07)	neutral(0.319)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
EXOSC10	5394	genome.wustl.edu	37	1	11139788	11139788	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001998.1	-1	validated	p.R577*	0.977	173	0.6%	89	40.4%	35	8.5%	-	-	-	HMMSmart_SM00341
EXOSC10	5394	genome.wustl.edu	37	1	11141203	11141203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001998.1	-1	validated	p.R458H	0.660	87	0%	56	42.9%	32	9.3%	benign(0.359)	tolerated(0.06)	neutral(0.436)	NULL
MTOR	2475	genome.wustl.edu	37	1	11168304	11168304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.T2523M	0.982	206	0%	140	55.7%	42	50%	possibly_damaging(0.501)	tolerated(0.06)	deleterious(0.490)	HMMPfam_FATC
MTOR	2475	genome.wustl.edu	37	1	11188524	11188524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.R1966Q	1.000	142	0%	92	20.7%	29	17.2%	benign(0.042)	deleterious(0)	neutral(0.447)	superfamily_ARM-type_fold
DHRS3	9249	genome.wustl.edu	37	1	12677265	12677265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004753.4	-1	validated	p.P30L	1.000	59	0%	36	36.1%	16	56.2%	possibly_damaging(0.767)	deleterious(0.03)	deleterious(0.649)	NULL
PLEKHM2	23207	genome.wustl.edu	37	1	16044471	16044471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015164.2	+1	validated	p.H121Y	1.000	252	0%	142	42.3%	40	47.5%	benign(0.317)	deleterious(0.05)	neutral(0.445)	HMMPfam_RUN,HMMSmart_RUN
SPEN	23013	genome.wustl.edu	37	1	16202787	16202787	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.Y165	1.000	157	0%	119	47.1%	4	75%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16256084	16256084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.Q1117*	0.028	71	0%	49	55.1%	11	45.4%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16261435	16261435	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.S2900	0.002	83	0%	62	53.2%	36	44.4%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16262154	16262154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.P3140L	0.986	38	0%	25	68%	45	46.6%	unknown(0)	tolerated(0.34)	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16262686	16262686	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015001.2	+1	reviewed	p.P3317	0.000	85	0%	68	45.6%	48	47.9%	-	-	-	NULL
ZBTB17	7709	genome.wustl.edu	37	1	16270714	16270714	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448462	-1	known	p.A421	0.000	32	0%	33	48.5%	1	100%	-	-	-	NULL
MST1P9	11223	genome.wustl.edu	37	1	17085040	17085040	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002729.2	-1	validated	NULL	0.353	333	0.3%	205	13.7%	4	0%	-	-	-	-
PAX7	5081	genome.wustl.edu	37	1	19027209	19027209	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002584.2	+1	reviewed	p.A283	0.000	28	0%	23	34.8%	0	-	-	-	-	superfamily_Homeodomain-like
TAS1R2	80834	genome.wustl.edu	37	1	19166156	19166156	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.P819	0.075	143	0%	92	40.2%	0	-	-	-	-	HMMPfam_7tm_3
PQLC2	54896	genome.wustl.edu	37	1	19644286	19644286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040125.1	+1	validated	p.V39M	1.000	161	0%	120	16.7%	25	16%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PQ-loop
OTUD3	23252	genome.wustl.edu	37	1	20230831	20230831	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015207.1	+1	validated	p.D226	0.828	297	0%	238	45.4%	2	50%	-	-	-	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21143964	21143964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.A1423V	0.998	235	0.4%	167	17.4%	48	6.2%	probably_damaging(0.99)	tolerated(0.49)	neutral(0.452)	superfamily_PH domain-like
LDLRAD2	401944	genome.wustl.edu	37	1	22148092	22148092	+	Missense_Mutation	SNP	G	G	A	rs187938808	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013693.2	+1	validated	p.A265T	0.000	88	0%	59	42.4%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
HSPG2	3339	genome.wustl.edu	37	1	22205598	22205598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.T787M	0.998	95	0%	54	48.1%	14	42.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
HTR1D	3352	genome.wustl.edu	37	1	23520393	23520393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000864.4	-1	validated	p.G107D	1.000	478	0%	388	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TCEA3	6920	genome.wustl.edu	37	1	23720488	23720488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003196.1	-1	validated	p.R235W	1.000	149	0%	120	16.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
RPL11	6135	genome.wustl.edu	37	1	24022839	24022839	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000975.2	+1	reviewed	p.D171	1.000	340	0%	288	45.5%	2043	50.8%	-	-	-	superfamily_Ribosomal protein L5
IL22RA1	58985	genome.wustl.edu	37	1	24448150	24448150	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021258.2	-1	reviewed	p.S290	0.000	120	0%	84	51.2%	0	-	-	-	-	NULL
IL28RA	163702	genome.wustl.edu	37	1	24483816	24483816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170743.2	-1	reviewed	p.P456L	0.009	109	0%	99	46.5%	2	50%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
NIPAL3	57185	genome.wustl.edu	37	1	24782661	24782661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020448.4	+1	validated	p.A224V	0.999	397	0%	255	46.7%	24	41.6%	benign(0.269)	deleterious(0)	deleterious(0.473)	HMMPfam_DUF803
RCAN3	11123	genome.wustl.edu	37	1	24857809	24857809	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013441.2	+1	validated	p.A99	0.204	98	0%	69	29%	18	22.2%	-	-	-	HMMPfam_Calcipressin
CLIC4	25932	genome.wustl.edu	37	1	25124269	25124269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013943.2	+1	reviewed	p.F37L	1.000	376	0.3%	261	37.5%	50	50%	benign(0.126)	deleterious(0.03)	neutral(0.375)	superfamily_Thioredoxin-like
RUNX3	864	genome.wustl.edu	37	1	25228664	25228664	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031680.2	-1	reviewed	p.T413	0.453	14	0%	10	50%	4	0%	-	-	-	HMMPfam_RunxI
RUNX3	864	genome.wustl.edu	37	1	25228691	25228691	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031680.2	-1	reviewed	p.A404	0.808	8	0.000	7	0.571	3	66.6%	-	-	-	HMMPfam_RunxI
SEPN1	57190	genome.wustl.edu	37	1	26131725	26131725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354177	+1	known	p.L132F	1.000	128	0%	102	42.2%	55	47.2%	possibly_damaging(0.644)	tolerated(0.1)	deleterious(0.512)	NULL
EXTL1	2134	genome.wustl.edu	37	1	26360226	26360226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004455.2	+1	reviewed	p.R520W	0.998	192	0%	142	49.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_64,superfamily_SSF53448
ARID1A	8289	genome.wustl.edu	37	1	27057761	27057761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.P490L	0.984	648	0.2%	502	45%	49	51%	unknown(0)	deleterious(0.04)	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27105774	27105774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.K1795N	0.485	67	0%	64	42.2%	58	51.7%	benign(0.033)	tolerated(0.45)	neutral(0.013)	NULL
ZDHHC18	84243	genome.wustl.edu	37	1	27177685	27177685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032283.2	+1	validated	p.T300M	1.000	381	0%	267	43.4%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPATCH3	63906	genome.wustl.edu	37	1	27219171	27219171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022078.2	-1	validated	p.R408H	1.000	94	0%	56	30.4%	22	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_G_patch
WDTC1	23038	genome.wustl.edu	37	1	27609861	27609861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015023.3	+1	validated	p.T71M	0.998	87	0%	66	48.5%	44	31.8%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDTC1	23038	genome.wustl.edu	37	1	27618814	27618814	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015023.3	+1	validated	p.D196	1.000	53	0%	51	13.7%	39	20.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDTC1	23038	genome.wustl.edu	37	1	27622848	27622848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015023.3	+1	validated	p.R302Q	1.000	576	0%	512	45.1%	54	48.1%	benign(0.374)	tolerated(0.46)	neutral(0.131)	superfamily_WD40 repeat-like
SYTL1	84958	genome.wustl.edu	37	1	27679892	27679892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032872.1	+1	provisional	p.R476C	0.993	52	0%	27	59.3%	55	49%	benign(0.015)	deleterious(0.05)	neutral(0.346)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SYTL1	84958	genome.wustl.edu	37	1	27680286	27680286	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032872.1	+1	provisional	p.P532	0.057	93	0%	50	50%	45	26.6%	-	-	-	NULL
GPR3	2827	genome.wustl.edu	37	1	27720941	27720941	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005281.2	+1	provisional	p.Y213	1.000	226	0%	132	47%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
FGR	2268	genome.wustl.edu	37	1	27939518	27939518	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042729.1	-1	reviewed	p.P499	0.137	104	0%	50	44%	1	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PTPRU	10076	genome.wustl.edu	37	1	29585804	29585804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005704.3	+1	reviewed	p.R170H	0.997	66	0%	43	48.8%	2	50%	benign(0.099)	tolerated(0.74)	neutral(0.009)	HMMPfam_MAM,HMMSmart_SM00137
SDC3	9672	genome.wustl.edu	37	1	31350004	31350004	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014654.3	-1	reviewed	p.Q89*	1.000	32	0%	15	46.7%	7	0%	-	-	-	HMMPfam_Syndecan
COL16A1	1307	genome.wustl.edu	37	1	32136232	32136232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.P1056T	1.000	62	0%	26	23.1%	0	-	probably_damaging(0.998)	tolerated(0.56)	deleterious(0.481)	HMMPfam_Collagen
SPOCD1	90853	genome.wustl.edu	37	1	32263862	32263862	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452755	-1	known	p.R96Q	0.000	105	0%	69	37.7%	0	-	-	-	-	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
SPOCD1	90853	genome.wustl.edu	37	1	32280807	32280807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144569.4	-1	provisional	p.P43L	0.000	27	0%	21	61.9%	0	-	possibly_damaging(0.931)	-	-	NULL
BSDC1	55108	genome.wustl.edu	37	1	32841904	32841904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143888.1	-1	validated	p.S389L	0.998	91	0%	62	35.5%	58	53.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF362	149076	genome.wustl.edu	37	1	33760803	33760803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152493.2	+1	validated	p.R348Q	1.000	104	0%	65	36.9%	55	41.8%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CLSPN	63967	genome.wustl.edu	37	1	36216872	36216872	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.E669	0.492	161	0%	126	52.4%	1	0%	-	-	-	NULL
THRAP3	9967	genome.wustl.edu	37	1	36752289	36752289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.R153Q	1.000	126	0%	117	41%	56	33.9%	unknown(0)	tolerated(0.06)	-	NULL
GRIK3	2899	genome.wustl.edu	37	1	37324825	37324825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000831.3	-1	reviewed	p.V330I	1.000	60	0%	37	54.1%	0	-	possibly_damaging(0.489)	deleterious(0.03)	deleterious(0.527)	HMMPfam_ANF_receptor,superfamily_SSF53822
EPHA10	284656	genome.wustl.edu	37	1	38192844	38192844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099439.1	-1	validated	p.V568I	0.985	99	0%	55	45.5%	0	-	probably_damaging(0.968)	tolerated(0.93)	neutral(0.410)	NULL
INPP5B	3633	genome.wustl.edu	37	1	38343869	38343869	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005540.2	-1	reviewed	p.F556	0.998	130	0%	84	41.7%	6	66.6%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
RLF	6018	genome.wustl.edu	37	1	40705007	40705007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.E1545K	1.000	114	0%	87	37.9%	16	31.2%	benign(0.404)	tolerated(0.48)	neutral(0.141)	NULL
RIMS3	9783	genome.wustl.edu	37	1	41101673	41101673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014747.2	-1	validated	p.A92T	1.000	60	0%	37	51.4%	2	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
KCNQ4	9132	genome.wustl.edu	37	1	41304142	41304142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004700.2	+1	reviewed	p.V679I	0.989	69	0%	50	60%	1	0%	benign(0.27)	tolerated(0.19)	neutral(0.079)	NULL
SLFNL1	200172	genome.wustl.edu	37	1	41486066	41486066	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144990.3	-1	validated	p.P89	0.001	20	0%	24	50%	2	50%	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	41978960	41978960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.R1978C	0.087	28	0%	22	22.7%	1	0%	possibly_damaging(0.938)	tolerated(0.2)	neutral(0.432)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42047765	42047765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.P902S	1.000	104	0%	87	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42645437	42645437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014947.3	-1	validated	p.R605C	1.000	291	0%	183	48.1%	24	45.8%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
SLC2A1	6513	genome.wustl.edu	37	1	43396518	43396518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006516.2	-1	reviewed	p.M99V	1.000	67	0%	36	50%	412	52.1%	benign(0)	tolerated(1)	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
WDR65	149465	genome.wustl.edu	37	1	43647257	43647257	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152498.3	+1	validated	p.R70	0.748	135	0%	100	36%	1	0%	-	-	-	superfamily_WD40_like
SZT2	23334	genome.wustl.edu	37	1	43913782	43913782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.R2300Q	1.000	67	0%	41	31.7%	16	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44084400	44084400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.R1491C	1.000	97	0%	59	39%	151	49.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ST3GAL3	6487	genome.wustl.edu	37	1	44386172	44386172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174963.2	+1	reviewed	p.A350T	0.999	153	0%	110	37.3%	5	20%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	HMMPfam_Glyco_transf_29
NASP	4678	genome.wustl.edu	37	1	46073567	46073567	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172164.1	+1	reviewed	p.A330	0.844	105	1%	68	51.5%	40	65%	-	-	-	superfamily_SSF48452
MAST2	23139	genome.wustl.edu	37	1	46498018	46498018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015112.2	+1	validated	p.R1119Q	1.000	93	0%	80	53.7%	32	40.6%	possibly_damaging(0.855)	deleterious(0.04)	deleterious(0.679)	HMMSmart_SM00228,superfamily_PDZ domain-like
ATPAF1	64756	genome.wustl.edu	37	1	47130978	47130978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022745.3	-1	reviewed	p.P109S	1.000	172	0%	116	50.9%	25	48%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ATP11
CYP4B1	1580	genome.wustl.edu	37	1	47282820	47282820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099772.1	+1	reviewed	p.V392I	0.782	238	0%	183	43.2%	1	0%	benign(0.202)	tolerated(1)	neutral(0.019)	HMMPfam_p450,superfamily_Cytochrome_P450
EPS15	2060	genome.wustl.edu	37	1	51829567	51829567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001981.2	-1	reviewed	p.T777N	1.000	523	0%	421	49.4%	39	53.8%	unknown(0)	tolerated(0.46)	-	NULL
SLC1A7	6512	genome.wustl.edu	37	1	53553755	53553755	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006671.4	-1	validated	p.Q537*	1.000	102	0%	83	43.4%	0	-	-	-	-	NULL
HSPB11	51668	genome.wustl.edu	37	1	54387426	54387426	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016126.2	-1	provisional	p.S111	0.059	187	0%	106	35.8%	67	52.2%	-	-	-	superfamily_Gal_bind_like
PARS2	25973	genome.wustl.edu	37	1	55223653	55223653	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152268.3	-1	validated	p.Y394	0.005	166	0.6%	105	41%	14	35.7%	-	-	-	HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS
DHCR24	1718	genome.wustl.edu	37	1	55317977	55317977	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014762.3	-1	reviewed	p.R494*	1.000	147	0%	98	55.1%	89	42.6%	-	-	-	NULL
LOC100288209	100288209	genome.wustl.edu	37	1	55331075	55331075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342084.1	+1	model	p.M252V	0.853	280	0%	192	46.4%	94	71.2%	-	-	-	NULL
C8A	731	genome.wustl.edu	37	1	57349331	57349331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000562.2	+1	reviewed	p.E278K	0.004	100	0%	66	36.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_MACPF
INADL	10207	genome.wustl.edu	37	1	62293182	62293182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.C636Y	1.000	349	0.3%	248	45.2%	8	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00228,superfamily_PDZ domain-like
INADL	10207	genome.wustl.edu	37	1	62299455	62299455	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.Q704*	1.000	244	0%	199	49.2%	5	20%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
INADL	10207	genome.wustl.edu	37	1	62321781	62321781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.L731P	0.046	220	0%	131	46.6%	10	60%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
L1TD1	54596	genome.wustl.edu	37	1	62672563	62672563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.P88H	0.001	51	0%	39	38.5%	0	-	unknown(0)	deleterious(0)	-	NULL
KANK4	163782	genome.wustl.edu	37	1	62739820	62739820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.D319G	0.000	130	0%	83	42.2%	0	-	probably_damaging(0.955)	tolerated(0.27)	neutral(0.432)	NULL
WDR78	79819	genome.wustl.edu	37	1	67390504	67390504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024763.4	-1	validated	p.G4D	1.000	109	0%	70	57.1%	3	33.3%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
CRYZ	1429	genome.wustl.edu	37	1	75172129	75172129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130042.1	-1	reviewed	p.Q281*	0.113	115	0%	88	46.6%	50	34%	-	-	-	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd
SLC44A5	204962	genome.wustl.edu	37	1	75693480	75693480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152697.4	-1	validated	p.I306F	0.001	333	0%	218	45.4%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
NEXN	91624	genome.wustl.edu	37	1	78408157	78408157	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342754	+1	known	p.R457K	0.321	95	0%	85	48.2%	0	-	-	-	-	NULL
FUBP1	8880	genome.wustl.edu	37	1	78422372	78422372	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003902.3	-1	reviewed	p.T530	0.878	221	0%	183	40.4%	136	45.5%	-	-	-	NULL
LPAR3	23566	genome.wustl.edu	37	1	85279805	85279805	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012152.2	-1	reviewed	p.D262	0.934	64	0%	40	50%	10	50%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MCOLN2	255231	genome.wustl.edu	37	1	85403502	85403502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153259.2	-1	reviewed	p.A424V	1.000	217	0%	188	50%	3	100%	possibly_damaging(0.854)	tolerated(0.2)	neutral(0.378)	HMMPfam_Ion_trans
BARHL2	343472	genome.wustl.edu	37	1	91177972	91177972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020063.1	-1	validated	p.R354Q	1.000	56	0%	52	44.2%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92642519	92642519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015237.2	+1	validated	p.S152L	0.993	65	0%	66	19.7%	1	0%	possibly_damaging(0.658)	deleterious(0.02)	deleterious(0.616)	NULL
PALMD	54873	genome.wustl.edu	37	1	100154699	100154699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017734.4	+1	validated	p.G295C	0.000	150	0.7%	103	44.7%	4	0%	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	NULL
LRRC39	127495	genome.wustl.edu	37	1	100621829	100621829	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144620.2	-1	provisional	p.N186	1.000	247	0%	173	46.2%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
PRPF38B	55119	genome.wustl.edu	37	1	109238366	109238366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018061.2	+1	validated	p.A107T	1.000	367	0%	240	45%	24	70.8%	benign(0.248)	tolerated(0.06)	neutral(0.348)	HMMPfam_PRP38
FNDC7	163479	genome.wustl.edu	37	1	109273298	109273298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144937.1	+1	provisional	p.P543S	1.000	275	0%	210	45.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00060,superfamily_Fibronectin type III
CELSR2	1952	genome.wustl.edu	37	1	109813890	109813890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.R2550W	1.000	98	0%	83	45.8%	59	35.5%	probably_damaging(0.997)	tolerated(0.24)	deleterious(0.504)	HMMPfam_7tm_2
MYBPHL	343263	genome.wustl.edu	37	1	109840069	109840069	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010985.2	-1	validated	p.T135	0.161	40	0%	34	32.4%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RBM15	64783	genome.wustl.edu	37	1	110884213	110884213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022768.4	+1	validated	p.R729K	1.000	69	0%	61	55.7%	8	37.5%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	NULL
KCND3	3752	genome.wustl.edu	37	1	112524688	112524688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004980.3	-1	reviewed	p.R221C	1.000	25	0%	17	41.2%	8	87.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Voltage-gated potassium channels
AMPD1	270	genome.wustl.edu	37	1	115221096	115221096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000036.2	-1	reviewed	p.R317H	1.000	259	0%	230	45.2%	0	-	benign(0.154)	deleterious(0.01)	neutral(0.419)	HMMPfam_A_deaminase,superfamily_SSF51556
MAN1A2	10905	genome.wustl.edu	37	1	118042063	118042063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006699.3	+1	validated	p.R522W	1.000	110	0%	110	57.3%	23	60.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
PDE4DIP	9659	genome.wustl.edu	37	1	144930999	144930999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002811.1	-1	validated	p.T237M	0.987	238	0%	126	31.7%	12	25%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
HFE2	148738	genome.wustl.edu	37	1	145415544	145415544	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213653.3	+1	reviewed	p.R121	0.634	14	0.000	8	0.625	0	-	-	-	-	HMMPfam_RGM_N
NUDT17	200035	genome.wustl.edu	37	1	145588452	145588452	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012758.2	-1	validated	p.R141*	0.371	108	0%	70	45.7%	1	0%	-	-	-	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
GJA8	2703	genome.wustl.edu	37	1	147380380	147380380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005267.4	+1	reviewed	p.V100I	1.000	171	0%	107	25.2%	0	-	benign(0.147)	tolerated(0.3)	neutral(0.042)	HMMPfam_Connexin
OTUD7B	56957	genome.wustl.edu	37	1	149915911	149915911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020205.2	-1	validated	p.R793W	0.531	208	0.5%	163	53.4%	21	52.3%	benign(0.393)	tolerated(0.1)	neutral(0.412)	NULL
ADAMTSL4	54507	genome.wustl.edu	37	1	150531024	150531024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019032.4	+1	reviewed	p.E820K	0.806	57	0%	34	41.2%	2	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RORC	6097	genome.wustl.edu	37	1	151785530	151785530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005060.3	-1	reviewed	p.C393Y	1.000	145	0%	91	11%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TCHHL1	126637	genome.wustl.edu	37	1	152058209	152058209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008536.1	-1	provisional	p.N650S	0.000	321	0%	269	38.7%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
FLG	2312	genome.wustl.edu	37	1	152282155	152282155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.A1736V	0.000	294	0%	231	47.2%	0	-	unknown(0)	tolerated(0.34)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152282168	152282168	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.Q1732*	0.000	296	0%	232	47%	0	-	-	-	-	NULL
S100A16	140576	genome.wustl.edu	37	1	153580611	153580611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080388.1	-1	provisional	p.T6M	0.977	85	0%	82	45.1%	533	47.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_EF-hand
DENND4B	9909	genome.wustl.edu	37	1	153914558	153914558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.A281V	0.979	48	0%	36	55.6%	15	60%	benign(0.406)	tolerated(0.26)	neutral(0.165)	NULL
DENND4B	9909	genome.wustl.edu	37	1	153915584	153915584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.R114C	0.765	171	0%	115	55.7%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154228171	154228171	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433615	+1	known	p.A30T	0.807	316	0%	270	16.3%	202	21.2%	-	-	-	NULL
PYGO2	90780	genome.wustl.edu	37	1	154932145	154932145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138300.3	-1	validated	p.A111T	1.000	39	0%	21	57.1%	32	46.8%	unknown(0)	tolerated(0.07)	-	NULL
RXFP4	339403	genome.wustl.edu	37	1	155912003	155912003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181885.2	+1	validated	p.A168V	0.001	54	0%	28	57.1%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
SLC25A44	9673	genome.wustl.edu	37	1	156169930	156169930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014655.2	+1	validated	p.R98W	0.987	131	0%	132	12.9%	22	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
IQGAP3	128239	genome.wustl.edu	37	1	156504468	156504468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178229.4	-1	validated	p.A1189T	1.000	36	0%	33	39.4%	10	40%	probably_damaging(0.969)	tolerated(0.17)	deleterious(0.470)	HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP
NES	10763	genome.wustl.edu	37	1	156642823	156642823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.A386D	1.000	248	0%	155	48.4%	15	6.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR10K1	391109	genome.wustl.edu	37	1	158435397	158435397	+	Missense_Mutation	SNP	G	G	A	rs189644667	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004473.1	+1	provisional	p.G16S	1.000	253	0%	158	56.3%	0	-	benign(0.229)	tolerated(0.09)	neutral(0.320)	superfamily_SSF81321
DUSP23	54935	genome.wustl.edu	37	1	159752118	159752118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017823.3	+1	validated	p.R148Q	1.000	117	0%	83	56.6%	103	42.7%	benign(0.008)	tolerated(0.4)	neutral(0.016)	HMMPfam_DSPc,superfamily_SSF52799
FCRL6	343413	genome.wustl.edu	37	1	159779295	159779295	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004310.2	+1	validated	p.P236	0.000	97	0%	60	18.3%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IGSF9	57549	genome.wustl.edu	37	1	159901025	159901025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.V514M	1.000	116	0%	56	42.9%	26	65.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
IGSF9	57549	genome.wustl.edu	37	1	159904347	159904347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.R277W	0.984	88	1.1%	45	62.2%	21	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SLAMF9	89886	genome.wustl.edu	37	1	159922143	159922143	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033438.3	-1	reviewed	p.P191	0.001	238	0%	168	49.4%	0	-	-	-	-	superfamily_Immunoglobulin
IGSF8	93185	genome.wustl.edu	37	1	160063044	160063044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052868.2	-1	provisional	p.V328M	1.000	50	0%	16	43.8%	125	42.4%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ATP1A4	480	genome.wustl.edu	37	1	160129242	160129242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.R235H	1.000	182	0%	126	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
USP21	27005	genome.wustl.edu	37	1	161130461	161130461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014443.2	+1	reviewed	p.R11C	1.000	57	0%	35	37.1%	26	46.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NR1I3	9970	genome.wustl.edu	37	1	161202704	161202704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502848	-1	known	p.L91I	0.003	310	0%	205	48.8%	0	-	benign(0.363)	tolerated(0.28)	neutral(0.147)	superfamily_SSF57716
ATF6	22926	genome.wustl.edu	37	1	161833041	161833041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.Q553R	1.000	269	0%	206	42.2%	32	71.8%	possibly_damaging(0.925)	tolerated(0.42)	neutral(0.388)	NULL
RXRG	6258	genome.wustl.edu	37	1	165398012	165398012	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006917.3	-1	reviewed	p.S81T	0.998	101	0%	56	51.8%	0	-	benign(0.062)	tolerated(0.13)	neutral(0.257)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167095645	167095645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.S426L	0.000	32	0%	24	62.5%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167096118	167096118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.V584I	0.118	72	0%	55	32.7%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167096962	167096962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.R865H	1.000	166	0%	119	49.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TIPRL	261726	genome.wustl.edu	37	1	168169272	168169272	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152902.3	+1	validated	p.T269	0.013	146	0%	135	20.7%	45	24.4%	-	-	-	NULL
LOC646870	646870	genome.wustl.edu	37	1	173332128	173332128	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040282.2	-1	model	NULL	0.941	79	0%	61	52.5%	0	-	-	-	-	-
MRPS14	63931	genome.wustl.edu	37	1	174983899	174983899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022100.1	-1	reviewed	p.R98H	0.998	135	0%	90	43.3%	60	43.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribosomal_S14,superfamily_SSF57716
ASTN1	460	genome.wustl.edu	37	1	176838101	176838101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004319.1	-1	validated	p.A1176T	1.000	275	0%	194	40.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ASTN1	460	genome.wustl.edu	37	1	176915177	176915177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004319.1	-1	validated	p.C712R	1.000	98	0%	68	48.5%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178252770	178252770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170692.2	+1	reviewed	p.R74W	1.000	307	0%	192	48.4%	4	25%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMSmart_PH,superfamily_SSF50729
CEP350	9857	genome.wustl.edu	37	1	180006190	180006190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.Q1359R	1.000	252	0%	153	45.8%	5	0%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181700354	181700354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.R762C	1.000	312	0%	207	55.1%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
RNASEL	6041	genome.wustl.edu	37	1	182554743	182554743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021133.2	-1	reviewed	p.R400H	0.000	113	0%	94	51.1%	8	50%	benign(0.047)	tolerated(0.19)	neutral(0.053)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
DHX9	1660	genome.wustl.edu	37	1	182827274	182827274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.L237M	0.993	269	0%	202	46.5%	71	50.7%	probably_damaging(0.963)	tolerated(0.1)	deleterious(0.692)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
SHCBP1L	81626	genome.wustl.edu	37	1	182908489	182908489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030933.2	-1	validated	p.A300T	1.000	173	0.6%	144	50%	0	-	possibly_damaging(0.814)	tolerated(0.26)	neutral(0.342)	NULL
SHCBP1L	81626	genome.wustl.edu	37	1	182921961	182921961	+	Missense_Mutation	SNP	G	G	A	rs184524719	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030933.2	-1	validated	p.A103V	0.926	14	0%	18	72.2%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185269131	185269131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006469.4	-1	validated	p.R501W	1.000	231	0%	170	46.5%	160	45.6%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
HMCN1	83872	genome.wustl.edu	37	1	185902768	185902768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.V547A	1.000	272	0.4%	200	48.5%	1	0%	benign(0.006)	tolerated(0.48)	neutral(0.011)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185969236	185969236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.P1312S	1.000	165	0%	159	52.8%	0	-	probably_damaging(0.999)	tolerated(0.38)	deleterious(0.508)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185969339	185969339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.T1346N	0.991	159	0%	154	51.3%	0	-	benign(0.005)	tolerated(0.35)	neutral(0.021)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186045696	186045696	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.L2809	1.000	248	0%	160	40.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TPR	7175	genome.wustl.edu	37	1	186301442	186301442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.R1830H	0.996	229	0%	180	44.4%	63	41.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C1orf53	388722	genome.wustl.edu	37	1	197875017	197875017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024594.2	+1	validated	p.A119V	0.998	175	0%	116	45.7%	18	44.4%	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	NULL
LAD1	3898	genome.wustl.edu	37	1	201355600	201355600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005558.3	-1	reviewed	p.A297T	0.000	54	0%	30	76.7%	83	46.9%	benign(0.002)	tolerated(0.51)	neutral(0.009)	NULL
CSRP1	1465	genome.wustl.edu	37	1	201459366	201459366	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004078.2	-1	reviewed	p.Y73	0.574	114	0%	104	55.8%	150	38.6%	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LGR6	59352	genome.wustl.edu	37	1	202245467	202245467	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017403.1	+1	reviewed	p.P154	0.959	43	0%	31	29%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
KDM5B	10765	genome.wustl.edu	37	1	202727617	202727617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.A367S	1.000	219	0%	162	48.8%	32	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FMOD	2331	genome.wustl.edu	37	1	203311556	203311556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002023.3	-1	reviewed	p.R349H	1.000	43	0%	30	43.3%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
PLEKHA6	22874	genome.wustl.edu	37	1	204226828	204226828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014935.2	-1	validated	p.R393C	1.000	46	0%	23	21.7%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NFASC	23114	genome.wustl.edu	37	1	204943400	204943400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.P469L	1.000	91	0%	58	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
SRGAP2	23380	genome.wustl.edu	37	1	206613370	206613370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414359	+1	known	p.L528I	1.000	353	0%	252	46%	12	50%	possibly_damaging(0.68)	tolerated(0.44)	neutral(0.255)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
LGTN	100529141	genome.wustl.edu	37	1	206782805	206782805	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006893.2	-1	reviewed	p.T85	0.898	233	0%	159	40.9%	49	57.1%	-	-	-	NULL
C1orf116	79098	genome.wustl.edu	37	1	207196307	207196307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023938.5	-1	validated	p.G268W	0.000	692	0%	536	46.1%	15	60%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
PLXNA2	5362	genome.wustl.edu	37	1	208234128	208234128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.V881M	0.991	39	0%	31	61.3%	2	50%	benign(0.016)	tolerated(0.26)	neutral(0.035)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
LAMB3	3914	genome.wustl.edu	37	1	209799116	209799116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.R618H	0.000	55	0%	32	50%	138	51.4%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
RCOR3	55758	genome.wustl.edu	37	1	211486098	211486098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136223.1	+1	validated	p.A371V	1.000	198	0%	172	14%	13	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
RD3	343035	genome.wustl.edu	37	1	211652449	211652449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183059.2	-1	reviewed	p.V173M	1.000	28	0%	19	36.8%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
INTS7	25896	genome.wustl.edu	37	1	212115383	212115383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015434.2	-1	provisional	p.Q891R	1.000	364	0%	275	22.5%	24	16.6%	possibly_damaging(0.797)	deleterious(0.03)	deleterious(0.664)	NULL
DTL	51514	genome.wustl.edu	37	1	212274425	212274425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016448.2	+1	validated	p.P698L	0.980	107	0%	52	26.9%	25	48%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANGEL2	90806	genome.wustl.edu	37	1	213180442	213180445	+	Frame_Shift_Del	DEL	AAAA	AAAA	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	AAAA	AAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310246	-1	known	p.F223fs	0.007:0.006:0.011:0.009	-	-	-	-	-	-	-	-	-	HMMPfam_Exo_endo_phos
PROX1	5629	genome.wustl.edu	37	1	214171174	214171174	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002763.3	+1	provisional	p.S432	1.000	131	0%	92	23.9%	0	-	-	-	-	HMMPfam_Prox1
PTPN14	5784	genome.wustl.edu	37	1	214558018	214558018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.V394I	0.993	145	0%	108	50%	13	46.1%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
GPATCH2	55105	genome.wustl.edu	37	1	217793681	217793681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018040.2	-1	provisional	p.R73W	1.000	164	0%	126	50%	13	69.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220379276	220379276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.R229C	1.000	197	0%	128	32.8%	9	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DISP1	84976	genome.wustl.edu	37	1	223177080	223177080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032890.2	+1	reviewed	p.E781K	1.000	72	0%	58	44.8%	5	60%	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	HMMPfam_Patched
TP53BP2	7159	genome.wustl.edu	37	1	223985959	223985959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031685.2	-1	reviewed	p.A636T	0.992	159	0%	133	41.4%	33	36.3%	probably_damaging(0.996)	tolerated(0.82)	neutral(0.462)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225528250	225528250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.G3416C	0.970	282	0%	216	46.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM63A	9725	genome.wustl.edu	37	1	226041358	226041358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014698.2	-1	validated	p.T590M	1.000	48	0%	32	50%	68	42.6%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_DUF221
LEFTY1	10637	genome.wustl.edu	37	1	226074546	226074546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020997.2	-1	reviewed	p.V328I	0.944	61	0%	23	47.8%	5	40%	possibly_damaging(0.719)	tolerated(0.07)	deleterious(0.580)	HMMSmart_TGFB,superfamily_SSF57501
ITPKB	3707	genome.wustl.edu	37	1	226924446	226924446	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.P238	0.000	21	0%	15	53.3%	19	36.8%	-	-	-	NULL
CDC42BPA	8476	genome.wustl.edu	37	1	227300593	227300593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003607.3	-1	reviewed	p.R557*	1.000	260	0%	196	50%	3	0%	-	-	-	NULL
PRSS38	339501	genome.wustl.edu	37	1	228033727	228033727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183062.2	+1	validated	p.R267*	0.058	180	0%	112	41.1%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
GUK1	2987	genome.wustl.edu	37	1	228335142	228335142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000858.5	+1	validated	p.R96H	0.995	61	0%	40	47.5%	563	41.9%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
GJC2	57165	genome.wustl.edu	37	1	228345955	228345955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020435.2	+1	reviewed	p.G166S	0.000	6	0.000	5	0.800	2	100%	probably_damaging(0.992)	tolerated(0.78)	neutral(0.449)	NULL
URB2	9816	genome.wustl.edu	37	1	229794924	229794924	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014777.2	+1	provisional	p.D1485	0.958	134	0%	82	43.9%	35	48.5%	-	-	-	HMMPfam_Urb2
SIPA1L2	57568	genome.wustl.edu	37	1	232579400	232579400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.D1129N	1.000	188	0%	152	46.7%	7	28.5%	probably_damaging(0.976)	tolerated(0.29)	neutral(0.447)	NULL
KIAA1804	84451	genome.wustl.edu	37	1	233507866	233507866	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032435.2	+1	validated	p.P545	0.902	98	0%	67	50.7%	13	69.2%	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235826246	235826246	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.A3800	0.008	113	0%	73	41.1%	4	50%	-	-	-	NULL
LGALS8	3964	genome.wustl.edu	37	1	236708109	236708109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006499.3	+1	reviewed	p.R275H	1.000	229	0%	147	41.5%	23	30.4%	possibly_damaging(0.817)	deleterious(0.01)	deleterious(0.715)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
RYR2	6262	genome.wustl.edu	37	1	237777401	237777401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.L1658H	1.000	113	0%	72	34.7%	0	-	probably_damaging(1)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237819174	237819174	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A2673	0.276	131	0%	96	37.5%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237947309	237947309	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A4099	0.000	95	0%	73	37%	0	-	-	-	-	NULL
GREM2	64388	genome.wustl.edu	37	1	240656396	240656396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022469.3	-1	reviewed	p.R127H	0.999	61	0%	31	41.9%	0	-	possibly_damaging(0.841)	deleterious(0.01)	deleterious(0.727)	HMMPfam_DAN,HMMSmart_CT
WDR64	128025	genome.wustl.edu	37	1	241875121	241875121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144625.4	+1	validated	p.S41F	1.000	490	0%	302	44%	0	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SDCCAG8	10806	genome.wustl.edu	37	1	243493919	243493919	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.Q382	1.000	164	0%	91	49.5%	4	25%	-	-	-	NULL
KIF26B	55083	genome.wustl.edu	37	1	245775221	245775221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018012.3	+1	provisional	p.V681M	1.000	59	3.4%	42	50%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP3	114548	genome.wustl.edu	37	1	247587244	247587244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079821.2	+1	reviewed	p.R167C	0.978	137	0%	121	48.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR2M5	127059	genome.wustl.edu	37	1	248309151	248309151	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004690.1	+1	provisional	p.R234	0.000	405	0%	352	51.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T3	343173	genome.wustl.edu	37	1	248637608	248637608	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005495.1	+1	provisional	p.*319	0.000	280	0%	200	19%	0	-	-	-	-	NULL
OR2T10	127069	genome.wustl.edu	37	1	248757065	248757065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004693.1	-1	provisional	p.R2Q	0.039	18	0%	23	43.5%	0	-	benign(0.08)	tolerated(0.06)	neutral(0.328)	superfamily_Family A G protein-coupled receptor-like
PXDN	7837	genome.wustl.edu	37	2	1652897	1652897	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.C885	0.996	15	0.000	8	0.625	6	0%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
TSSC1	7260	genome.wustl.edu	37	2	3341826	3341826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003310.2	-1	validated	p.P74H	1.000	317	0%	224	48.7%	57	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
ASAP2	8853	genome.wustl.edu	37	2	9531245	9531245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003887.2	+1	reviewed	p.D813G	1.000	135	0%	99	44.4%	3	66.6%	benign(0.277)	tolerated(0.28)	neutral(0.061)	NULL
TAF1B	9014	genome.wustl.edu	37	2	9985365	9985365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005680.2	+1	reviewed	p.R12H	0.543	248	0%	156	37.2%	2	0%	possibly_damaging(0.87)	tolerated(0.09)	deleterious(0.635)	NULL
UNQ5830	400943	genome.wustl.edu	37	2	10143693	10143693	+	RNA	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041686.1	-1	model	NULL	0.002	219	0%	150	44%	0	-	-	-	-	-
GREB1	9687	genome.wustl.edu	37	2	11773103	11773103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.Q1635H	1.000	161	0%	102	46.1%	46	60.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
MSGN1	343930	genome.wustl.edu	37	2	17998265	17998265	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105569.1	+1	provisional	p.Q160	1.000	42	0%	31	16.1%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
ADCY3	109	genome.wustl.edu	37	2	25141412	25141412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004036.3	-1	reviewed	p.A149T	0.997	92	0%	48	12.5%	8	12.5%	benign(0.009)	tolerated(0.45)	neutral(0.013)	NULL
GPR113	165082	genome.wustl.edu	37	2	26533814	26533814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145168.1	-1	validated	p.T928A	0.055	109	0%	80	37.5%	0	-	benign(0.018)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_2
CCDC164	92749	genome.wustl.edu	37	2	26654829	26654829	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145038.2	+1	validated	p.C281	0.002	234	0%	173	44.5%	0	-	-	-	-	NULL
C2orf70	339778	genome.wustl.edu	37	2	26800394	26800394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105519.1	+1	predicted	p.Q120R	0.991	96	0%	56	39.3%	3	33.3%	benign(0)	tolerated(0.92)	-	NULL
AGBL5	60509	genome.wustl.edu	37	2	27275943	27275943	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021831.5	+1	validated	p.A39	0.330	137	0%	110	40%	27	55.5%	-	-	-	NULL
C2orf53	339779	genome.wustl.edu	37	2	27360111	27360111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178553.3	-1	validated	p.A363T	0.522	198	0%	103	54.4%	0	-	benign(0.359)	tolerated(0.33)	neutral(0.138)	NULL
SLC5A6	8884	genome.wustl.edu	37	2	27424857	27424857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021095.2	-1	validated	p.P454H	0.721	102	0%	50	42%	29	62%	benign(0.186)	tolerated(0.18)	neutral(0.074)	HMMPfam_SSF
CAD	790	genome.wustl.edu	37	2	27460605	27460605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.R1528Q	1.000	62	0%	46	39.1%	44	54.5%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	superfamily_SSF51556
NRBP1	29959	genome.wustl.edu	37	2	27656172	27656172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013392.2	+1	validated	p.S11N	1.000	144	0%	112	39.3%	106	48.1%	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	NULL
TRMT61B	55006	genome.wustl.edu	37	2	29093120	29093120	+	Silent	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017910.3	-1	validated	p.G8	0.000	58	0%	39	64.1%	11	45.4%	-	-	-	NULL
GALNT14	79623	genome.wustl.edu	37	2	31147091	31147091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024572.2	-1	validated	p.R425Q	1.000	815	0.1%	629	45.9%	0	-	probably_damaging(0.994)	tolerated(0.22)	deleterious(0.494)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
EHD3	30845	genome.wustl.edu	37	2	31457587	31457587	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014600.2	+1	validated	p.L34	1.000	86	0%	53	34%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MEMO1	51072	genome.wustl.edu	37	2	32117134	32117134	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422936	-1	known	p.S51L	1.000	179	0%	134	46.3%	6	0%	-	-	-	HMMPfam_Memo
ENSG00000181250	0	genome.wustl.edu	37	2	33952729	33952729	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322472	-1	known	p.S38	1.000	101	0%	69	42%	1	100%	-	-	-	HMMPfam_MARVEL
PREPL	9581	genome.wustl.edu	37	2	44569610	44569610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006036.4	-1	reviewed	p.A233V	0.962	278	0%	212	38.7%	14	64.2%	benign(0.425)	tolerated(0.39)	neutral(0.154)	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain
SIX2	10736	genome.wustl.edu	37	2	45236184	45236184	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016932.4	-1	reviewed	p.Q22	1.000	12	0%	15	66.7%	0	-	-	-	-	NULL
SRBD1	55133	genome.wustl.edu	37	2	45778293	45778293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018079.4	-1	validated	p.G549D	1.000	155	0%	131	43.5%	12	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00732
EPAS1	2034	genome.wustl.edu	37	2	46611733	46611733	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001430.4	+1	reviewed	p.P849	0.108	64	0%	35	22.9%	19	21%	-	-	-	HMMPfam_HIF-1a_CTAD
NRXN1	9378	genome.wustl.edu	37	2	51149005	51149005	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	e5+2	1.000	161	0%	137	23.4%	0	-	-	-	-	-
ERLEC1	27248	genome.wustl.edu	37	2	54028577	54028577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015701.3	+1	validated	p.P190H	1.000	119	0%	110	46.4%	34	8.8%	benign(0.198)	tolerated(0.08)	neutral(0.319)	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_PRKCSH
SPTBN1	6711	genome.wustl.edu	37	2	54853220	54853220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.R498H	1.000	158	0%	121	47.9%	56	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54858040	54858040	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.L952	1.000	39	0%	39	38.5%	58	58.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150
SPTBN1	6711	genome.wustl.edu	37	2	54858389	54858389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.R1069W	1.000	97	0%	65	55.4%	50	44%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54872483	54872483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.V1463M	1.000	147	0%	82	52.4%	91	49.4%	benign(0.167)	deleterious(0)	neutral(0.460)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54873365	54873365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.R1540H	1.000	51	0%	42	38.1%	77	38.9%	possibly_damaging(0.921)	tolerated(0.12)	deleterious(0.631)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MTIF2	4528	genome.wustl.edu	37	2	55471286	55471286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005369.1	-1	reviewed	p.R397H	1.000	377	0%	244	50.8%	38	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
EFEMP1	2202	genome.wustl.edu	37	2	56144999	56144999	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039348.1	-1	reviewed	p.S106	0.807	210	0%	153	48.4%	0	-	-	-	-	NULL
VRK2	7444	genome.wustl.edu	37	2	58386773	58386773	+	Missense_Mutation	SNP	G	G	A	rs192754138	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130480.1	+1	reviewed	p.R491H	0.001	475	0%	380	18.7%	33	24.2%	benign(0.018)	deleterious(0.02)	neutral(0.384)	NULL
PAPOLG	64895	genome.wustl.edu	37	2	61019286	61019286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022894.2	+1	reviewed	p.R514Q	1.000	96	0%	73	39.7%	8	37.5%	benign(0.071)	tolerated(0.51)	neutral(0.014)	NULL
AAK1	22848	genome.wustl.edu	37	2	69757768	69757768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014911.3	-1	reviewed	p.A243T	1.000	285	0%	207	44.9%	2	50%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SFXN5	94097	genome.wustl.edu	37	2	73195646	73195646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144579.2	-1	validated	p.A253V	1.000	65	0%	37	48.6%	27	37%	benign(0.068)	tolerated(0.48)	neutral(0.015)	HMMPfam_Mtc
SFXN5	94097	genome.wustl.edu	37	2	73226092	73226092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144579.2	-1	validated	p.A174T	0.987	184	0%	119	17.6%	9	11.1%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_Mtc
DCTN1	1639	genome.wustl.edu	37	2	74588751	74588751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004082.3	-1	reviewed	p.Q1238E	1.000	153	0%	121	35.5%	204	46.5%	benign(0.069)	tolerated(0.19)	neutral(0.054)	NULL
HTRA2	27429	genome.wustl.edu	37	2	74758793	74758793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013247.4	+1	reviewed	p.R337S	1.000	351	0%	242	42.6%	59	49.1%	probably_damaging(0.976)	tolerated(0.2)	neutral(0.467)	HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases
C2orf65	130951	genome.wustl.edu	37	2	74802659	74802659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138804.3	-1	predicted	p.P327L	0.987	137	0%	79	46.8%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SEMA4F	10505	genome.wustl.edu	37	2	74902699	74902699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004263.3	+1	provisional	p.V474I	0.800	233	0%	190	41.6%	3	66.6%	benign(0.005)	tolerated(1)	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
KCMF1	56888	genome.wustl.edu	37	2	85276621	85276621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020122.4	+1	validated	p.R245Q	1.000	163	0%	158	47.5%	121	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNLY	10578	genome.wustl.edu	37	2	85923115	85923115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006433.3	+1	reviewed	p.R64H	0.000	164	0%	102	48%	24	0%	benign(0.125)	tolerated(0.13)	neutral(0.263)	HMMSmart_SM00741
KRCC1	51315	genome.wustl.edu	37	2	88327388	88327388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016618.1	-1	provisional	p.R232H	0.998	335	0%	259	20.5%	39	20.5%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
ZNF2	7549	genome.wustl.edu	37	2	95843255	95843255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453539	+1	known	p.V21M	0.537	257	0%	174	46.6%	7	57.1%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SNRNP200	23020	genome.wustl.edu	37	2	96951047	96951047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014014.3	-1	reviewed	p.N1345	0.969	35	0%	26	26.9%	103	49.5%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNRNP200	23020	genome.wustl.edu	37	2	96952449	96952449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014014.3	-1	reviewed	p.R1269Q	1.000	248	0.4%	174	43.7%	128	54.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Sec63,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPRIPL1	150771	genome.wustl.edu	37	2	96992564	96992564	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420728	+1	known	p.P97L	0.000	240	0%	166	51.2%	0	-	-	-	-	NULL
FER1L5	90342	genome.wustl.edu	37	2	97364418	97364418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113382.1	+1	provisional	p.R1483H	0.969	93	0%	64	28.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FAM178B	51252	genome.wustl.edu	37	2	97587375	97587375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122646.2	-1	validated	p.A403V	0.001	45	0%	33	45.5%	0	-	benign(0.425)	tolerated(0.77)	neutral(0.139)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97899538	97899538	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461153	+1	known	p.D1170	0.094	494	0%	429	14.9%	0	-	-	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97911148	97911148	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461153	+1	known	p.T1411	0.987	477	0%	387	20.2%	4	25%	-	-	-	NULL
ZAP70	7535	genome.wustl.edu	37	2	98353986	98353986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079.3	+1	reviewed	p.M447T	1.000	105	0%	55	50.9%	3	0%	possibly_damaging(0.783)	tolerated(0.33)	neutral(0.317)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C2orf55	343990	genome.wustl.edu	37	2	99438762	99438762	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207362.2	-1	validated	p.A658	0.000	29	0%	22	63.6%	4	75%	-	-	-	NULL
AFF3	3899	genome.wustl.edu	37	2	100210148	100210148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025108.1	-1	reviewed	p.V684I	0.990	26	0%	11	36.4%	0	-	possibly_damaging(0.808)	tolerated(0.32)	neutral(0.328)	HMMPfam_AF-4
AFF3	3899	genome.wustl.edu	37	2	100210457	100210457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025108.1	-1	reviewed	p.V581M	0.536	15	0%	21	28.6%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_AF-4
AFF3	3899	genome.wustl.edu	37	2	100217938	100217938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025108.1	-1	reviewed	p.E469K	1.000	25	0.000	8	0.500	0	-	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	HMMPfam_AF-4
LONRF2	164832	genome.wustl.edu	37	2	100916234	100916234	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198461.3	-1	validated	p.P404	0.000	122	0%	107	49.5%	2	50%	-	-	-	superfamily_TPR-like
SLC9A2	6549	genome.wustl.edu	37	2	103299876	103299876	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003048.3	+1	validated	p.H387	0.816	288	0%	192	45.8%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
NPHP1	4867	genome.wustl.edu	37	2	110922295	110922295	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000272.3	-1	reviewed	p.H247	0.782	127	0%	117	50.4%	5	40%	-	-	-	NULL
FBLN7	129804	genome.wustl.edu	37	2	112922611	112922611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153214.2	+1	validated	p.G90D	1.000	120	0%	104	49%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
RGPD8	727851	genome.wustl.edu	37	2	113147475	113147475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.T1016S	0.030	148	0%	125	35.2%	5	0%	possibly_damaging(0.496)	tolerated(0.62)	neutral(0.170)	NULL
CKAP2L	150468	genome.wustl.edu	37	2	113509900	113509900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152515.3	-1	validated	p.E516K	0.401	507	0%	414	46.1%	6	66.6%	probably_damaging(0.982)	tolerated(0.07)	deleterious(0.746)	NULL
ENSG00000251207	0	genome.wustl.edu	37	2	114415498	114415498	+	RNA	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514936	-1	novel	NULL	0.993	35	0%	20	40%	0	-	-	-	-	-
TMEM177	80775	genome.wustl.edu	37	2	120439309	120439309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105198.1	+1	validated	p.R294C	0.999	31	0%	21	61.9%	40	47.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MKI67IP	84365	genome.wustl.edu	37	2	122485331	122485331	+	Missense_Mutation	SNP	C	C	T	rs187635665		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032390.4	-1	reviewed	p.R284Q	0.973	390	0%	299	38.5%	53	49%	possibly_damaging(0.559)	deleterious(0.02)	deleterious(0.574)	NULL
BIN1	274	genome.wustl.edu	37	2	127825781	127825781	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139343.1	-1	reviewed	p.L190	0.996	152	0%	75	44%	3	66.6%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
MYO7B	4648	genome.wustl.edu	37	2	128379624	128379624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.R1172H	1.000	76	0%	49	57.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MyTH4,HMMSmart_SM00139
LOC653269	653269	genome.wustl.edu	37	2	131220931	131220931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928585.2	-1	model	p.R896C	1.000	117	0%	59	50.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
LOC653269	653269	genome.wustl.edu	37	2	131266313	131266313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928585.2	-1	model	p.V166M	0.000	340	0%	240	28.3%	0	-	benign(0.232)	tolerated(1)	neutral(0.023)	HMMPfam_Ank,superfamily_Ankyrin repeat
NCKAP5	344148	genome.wustl.edu	37	2	134060675	134060675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.M26T	1.000	233	0%	166	53.6%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
UBXN4	23190	genome.wustl.edu	37	2	136519482	136519482	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014607.3	+1	validated	e6+1	1.000	103	0%	43	93%	1	100%	-	-	-	-
LCT	3938	genome.wustl.edu	37	2	136566158	136566158	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.T1253	0.643	266	0%	222	91%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
KIF5C	3800	genome.wustl.edu	37	2	149799200	149799200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.R172Q	1.000	268	0%	232	43.1%	1	0%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5C	3800	genome.wustl.edu	37	2	149868126	149868126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435030	+1	known	p.T937M	0.946	109	0%	80	96.3%	0	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152236046	152236048	+	In_Frame_Del	DEL	AAA	AAA	-	rs71403164	byCluster	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	p.*278in_frame_del	0.961:0.953	-	-	-	-	-	-	-	-	-	NULL
ACVR1	90	genome.wustl.edu	37	2	158617589	158617589	+	Missense_Mutation	SNP	C	C	T	rs121912679		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.G356D	1.000	77	0%	74	37.8%	18	61.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
TANC1	85461	genome.wustl.edu	37	2	160028734	160028734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.A485V	0.995	239	0%	142	20.4%	4	75%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160189112	160189112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.H1961R	1.000	179	0%	129	90.7%	24	100%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
SCN3A	6328	genome.wustl.edu	37	2	166032861	166032861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.R15H	1.000	310	0%	280	95.7%	0	-	possibly_damaging(0.936)	deleterious(0.04)	deleterious(0.730)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166245256	166245256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.R1647H	1.000	482	0%	381	43%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LRP2	4036	genome.wustl.edu	37	2	170062080	170062080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R2542C	1.000	97	1%	65	93.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
KLHL23	151230	genome.wustl.edu	37	2	170597966	170597966	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144711.4	+1	validated	p.G429*	1.000	125	0%	114	23.7%	15	6.6%	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
TTN	7273	genome.wustl.edu	37	2	179402474	179402474	+	Missense_Mutation	SNP	G	G	A	rs143556947	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R30584C	1.000	84	0%	53	90.6%	0	-	probably_damaging(1)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179428621	179428621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.S24843I	1.000	125	0%	82	93.9%	0	-	probably_damaging(0.997)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179547473	179547473	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Y9771	0.771	614	0.2%	453	28.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179645963	179645963	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.T1136	0.980	512	0%	358	45%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
PDE1A	5136	genome.wustl.edu	37	2	183095749	183095749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005019.3	-1	validated	p.R192H	1.000	284	0%	199	95%	0	-	possibly_damaging(0.474)	deleterious(0.01)	deleterious(0.562)	superfamily_SSF109604
FRZB	2487	genome.wustl.edu	37	2	183699583	183699583	+	Missense_Mutation	SNP	C	C	T	rs138459633	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001463.3	-1	reviewed	p.R324H	1.000	333	0.3%	275	16%	1	0%	benign(0.016)	tolerated(0.11)	neutral(0.272)	NULL
SDPR	8436	genome.wustl.edu	37	2	192700678	192700678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004657.5	-1	reviewed	p.A417T	0.384	24	0%	20	45%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196545314	196545314	+	Missense_Mutation	SNP	G	G	A	rs188606584	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.R183H	0.776	65	0%	52	13.5%	11	18.1%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196548548	196548548	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.E378	0.992	202	0%	142	92.3%	11	100%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196674544	196674544	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.C3271	1.000	181	0%	104	45.2%	1	0%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196729054	196729054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.R2442H	1.000	358	0%	261	19.9%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PGAP1	80055	genome.wustl.edu	37	2	197784739	197784739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.A95T	1.000	208	0%	135	93.3%	0	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases
TYW5	129450	genome.wustl.edu	37	2	200797978	200797978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039693.2	-1	validated	p.P254S	1.000	328	0%	229	20.5%	5	0%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
CASP8	841	genome.wustl.edu	37	2	202149791	202149791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.P411H	1.000	107	0%	87	94.3%	37	94.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_CYS,superfamily_Caspase-like
NRP2	8828	genome.wustl.edu	37	2	206588596	206588596	+	Missense_Mutation	SNP	C	C	T	rs113330212		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201266.1	+1	reviewed	p.T251M	1.000	213	0%	144	50.7%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ADAM23	8745	genome.wustl.edu	37	2	207437917	207437917	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003812.2	+1	reviewed	p.Q579*	1.000	357	0%	281	96.1%	0	-	-	-	-	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
KLF7	8609	genome.wustl.edu	37	2	207988559	207988559	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003709.2	-1	provisional	p.N224	1.000	168	0%	103	42.7%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP2	4133	genome.wustl.edu	37	2	210558944	210558944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.S684G	0.977	245	0%	194	37.6%	1	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_MAP2_projctn
PECR	55825	genome.wustl.edu	37	2	216931148	216931148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018441.5	-1	validated	p.R73Q	0.002	364	0.3%	283	92.9%	6	100%	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
IGFBP2	3485	genome.wustl.edu	37	2	217525405	217525405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000597.2	+1	validated	p.V190M	0.993	94	0%	84	88.1%	1842	98.9%	benign(0.287)	tolerated(0.07)	neutral(0.407)	NULL
TNP1	7141	genome.wustl.edu	37	2	217724660	217724660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003284.3	-1	validated	p.Y33C	1.000	542	0%	387	14%	0	-	probably_damaging(0.97)	-	-	HMMPfam_TP1,PatternScan_TP1
WNT6	7475	genome.wustl.edu	37	2	219736481	219736481	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006522.3	+1	reviewed	p.K192	1.000	60	0%	38	44.7%	0	-	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
GLB1L	79411	genome.wustl.edu	37	2	220104633	220104633	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440853	-1	known	p.S176	0.000	97	0%	103	18.4%	0	-	-	-	-	NULL
STK11IP	114790	genome.wustl.edu	37	2	220473920	220473920	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456909	+1	known	p.A637	0.956	109	0%	66	95.5%	6	100%	-	-	-	NULL
ACSL3	2181	genome.wustl.edu	37	2	223783810	223783810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004457.3	+1	reviewed	p.R232Q	1.000	173	0%	131	41.2%	34	35.2%	benign(0.021)	tolerated(0.21)	neutral(0.045)	HMMPfam_AMP-binding,superfamily_SSF56801
DOCK10	55619	genome.wustl.edu	37	2	225719699	225719699	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.N623	1.000	180	0%	105	98.1%	0	-	-	-	-	NULL
COL4A4	1286	genome.wustl.edu	37	2	227895166	227895166	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.G1322	1.000	290	0%	212	15.1%	0	-	-	-	-	HMMPfam_Collagen
COL4A4	1286	genome.wustl.edu	37	2	227919418	227919418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.G918R	0.995	137	0%	95	92.6%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228159776	228159776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.T1172M	0.014	202	0%	160	95%	0	-	unknown(0)	tolerated(0.13)	-	NULL
ITM2C	81618	genome.wustl.edu	37	2	231741676	231741676	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030926.4	+1	validated	p.N185	1.000	87	0%	79	49.4%	500	50.2%	-	-	-	HMMPfam_BRICHOS
PDE6D	5147	genome.wustl.edu	37	2	232602845	232602845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002601.2	-1	validated	p.R48H	1.000	228	0%	218	11%	27	11.1%	benign(0.009)	tolerated(0.2)	neutral(0.050)	HMMPfam_GMP_PDE_delta,superfamily_E set domains
DIS3L2	129563	genome.wustl.edu	37	2	233199431	233199431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152383.4	+1	validated	p.R794C	1.000	57	0%	41	95.1%	43	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHRND	1144	genome.wustl.edu	37	2	233393033	233393033	+	Missense_Mutation	SNP	G	G	A	rs147919651	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000751.1	+1	reviewed	p.R102H	1.000	197	0%	124	26.6%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GIGYF2	26058	genome.wustl.edu	37	2	233655848	233655850	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.E377in_frame_del	0.975:0.984:0.998	-	-	-	-	-	-	-	-	-	NULL
NGEF	25791	genome.wustl.edu	37	2	233746944	233746944	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424488	-1	known	p.W188*	1.000	125	0%	71	19.7%	19	10.5%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NGEF	25791	genome.wustl.edu	37	2	233791860	233791860	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.P140	1.000	63	0%	34	61.8%	6	0%	-	-	-	NULL
UGT1A6	54578	genome.wustl.edu	37	2	234601804	234601804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001072.3	+1	reviewed	p.R52W	0.003	157	0%	128	93%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
DNAJB3	414061	genome.wustl.edu	37	2	234652296	234652296	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001394.3	-1	validated	p.Y89	0.005	32	0%	33	24.2%	0	-	-	-	-	superfamily_DnaJ_N
PER2	8864	genome.wustl.edu	37	2	239155019	239155019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022817.2	-1	reviewed	p.T1255	0.010	307	0%	200	48.5%	4	50%	-	-	-	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241494308	241494308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016552.2	-1	validated	p.G15D	0.245	150	0%	96	95.8%	11	90.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
KIF1A	547	genome.wustl.edu	37	2	241662008	241662008	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431776	-1	known	p.R342Q	0.154	14	0%	13	100%	57	100%	-	-	-	NULL
KIF1A	547	genome.wustl.edu	37	2	241710558	241710558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428768	-1	known	p.R223Q	0.499	174	0%	100	92%	0	-	unknown(0)	deleterious(0)	-	NULL
SNED1	25992	genome.wustl.edu	37	2	242011247	242011247	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080437.1	+1	provisional	p.S1257	0.777	30	0%	20	95%	5	100%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
FARP2	9855	genome.wustl.edu	37	2	242402780	242402780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014808.2	+1	validated	p.A570T	0.978	181	0%	109	92.7%	4	100%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CNTN6	27255	genome.wustl.edu	37	3	1337344	1337344	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.R172*	0.143	157	0%	111	42.3%	0	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
SETD5	55209	genome.wustl.edu	37	3	9506239	9506239	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399686	+1	known	p.H537N	0.884	223	0%	144	41%	31	54.8%	-	-	-	NULL
IL17RC	84818	genome.wustl.edu	37	3	9965688	9965688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153461.2	+1	reviewed	p.R320Q	0.448	143	0%	92	31.5%	17	23.5%	possibly_damaging(0.778)	tolerated(0.41)	neutral(0.306)	NULL
TATDN2	9797	genome.wustl.edu	37	3	10320618	10320618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014760.3	+1	validated	p.T732M	0.986	96	0%	62	48.4%	43	51.1%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_TatD_DNase,superfamily_SSF51556
SLC6A11	6538	genome.wustl.edu	37	3	10967723	10967723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014229.1	+1	provisional	p.A385V	1.000	220	0%	130	27.7%	0	-	possibly_damaging(0.833)	deleterious(0.01)	deleterious(0.723)	HMMPfam_SNF
RAF1	5894	genome.wustl.edu	37	3	12641191	12641191	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002880.3	-1	reviewed	p.H369	0.976	216	0%	192	50%	71	43.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
IQSEC1	9922	genome.wustl.edu	37	3	12977059	12977059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014869.4	-1	validated	p.L500H	1.000	132	0%	78	48.7%	7	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NUP210	23225	genome.wustl.edu	37	3	13383335	13383335	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.R1047	0.155	389	0%	303	23.8%	75	14.6%	-	-	-	NULL
HDAC11	79885	genome.wustl.edu	37	3	13522809	13522809	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024827.3	+1	reviewed	p.P22	0.080	129	0%	89	46.1%	14	50%	-	-	-	superfamily_SSF52768
C3orf20	84077	genome.wustl.edu	37	3	14724534	14724534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032137.4	+1	validated	p.P105Q	0.000	104	0%	83	54.2%	0	-	benign(0.017)	tolerated(0.54)	neutral(0.008)	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17202505	17202505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134381.1	-1	validated	p.D802N	0.996	160	0.6%	130	36.9%	47	42.5%	benign(0.003)	tolerated(0.62)	neutral(0.004)	NULL
NGLY1	55768	genome.wustl.edu	37	3	25778827	25778827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018297.3	-1	reviewed	p.T334I	1.000	199	0%	132	45.5%	13	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases
OXSM	54995	genome.wustl.edu	37	3	25833132	25833132	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017897.2	+1	reviewed	p.T207	0.977	148	0%	108	45.4%	13	38.4%	-	-	-	HMMPfam_ketoacyl-synt,superfamily_Thiolase-like,PatternScan_B_KETOACYL_SYNTHASE
CNOT10	25904	genome.wustl.edu	37	3	32806208	32806208	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015442.1	+1	provisional	p.S637	0.308	173	0%	129	17.8%	42	14.2%	-	-	-	superfamily_TPR-like
DCLK3	85443	genome.wustl.edu	37	3	36759593	36759593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033403.1	-1	validated	p.R554H	1.000	176	0.6%	117	46.2%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SCN5A	6331	genome.wustl.edu	37	3	38627212	38627212	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.F919	1.000	118	0%	67	43.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MYRIP	25924	genome.wustl.edu	37	3	40231459	40231459	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015460.2	+1	validated	p.Y390	0.980	100	1%	84	45.2%	2	100%	-	-	-	NULL
KBTBD5	131377	genome.wustl.edu	37	3	42729654	42729654	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152393.2	+1	validated	p.E391	1.000	51	0%	41	46.3%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KIF15	56992	genome.wustl.edu	37	3	44843457	44843457	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020242.2	+1	validated	p.L500	0.998	27	0%	29	37.9%	2	50%	-	-	-	NULL
CDCP1	64866	genome.wustl.edu	37	3	45153677	45153677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022842.3	-1	reviewed	p.R185W	1.000	219	0.9%	142	40.1%	51	43.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC6A20	54716	genome.wustl.edu	37	3	45817361	45817361	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020208.3	-1	reviewed	p.P158	0.493	99	0%	70	44.3%	10	40%	-	-	-	HMMPfam_SNF
ALS2CL	259173	genome.wustl.edu	37	3	46724715	46724715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423707	-1	known	p.P269L	0.000	31	0%	22	36.4%	15	33.3%	-	-	-	NULL
PTH1R	5745	genome.wustl.edu	37	3	46939388	46939388	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000316.2	+1	reviewed	p.P119	0.103	130	0%	95	45.3%	0	-	-	-	-	HMMPfam_HRM,HMMSmart_HormR,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF111418
PTH1R	5745	genome.wustl.edu	37	3	46940148	46940148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000313063	+1	known	p.R410H	0.998	22	0%	40	47.5%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_7tm_2
SETD2	29072	genome.wustl.edu	37	3	47098699	47098699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.P2192H	1.000	275	0%	176	49.4%	56	41%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
KIF9	64147	genome.wustl.edu	37	3	47278001	47278001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134878.1	-1	validated	p.R678H	0.710	190	0%	115	52.2%	5	80%	possibly_damaging(0.812)	deleterious(0.03)	deleterious(0.670)	NULL
PTPN23	25930	genome.wustl.edu	37	3	47450414	47450414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015466.2	+1	validated	p.E493D	1.000	101	0%	48	52.1%	53	66%	benign(0.082)	tolerated(0.39)	neutral(0.022)	NULL
SCAP	22937	genome.wustl.edu	37	3	47456404	47456404	+	Silent	SNP	T	T	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.T1073	0.037	68	0%	52	17.3%	82	13.4%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAP4	4134	genome.wustl.edu	37	3	47951307	47951307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030884.3	-1	reviewed	p.D142G	0.003	193	0%	180	43.9%	1	0%	possibly_damaging(0.448)	deleterious(0)	deleterious(0.591)	NULL
PLXNB1	5364	genome.wustl.edu	37	3	48459616	48459616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130082.1	-1	validated	p.A1069V	0.990	25	0%	17	58.8%	56	51.7%	benign(0.238)	tolerated(0.33)	neutral(0.048)	HMMSmart_SM00429,superfamily_E set domains
SLC26A6	65010	genome.wustl.edu	37	3	48670933	48670933	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022911.2	-1	reviewed	p.T53	0.495	36	0%	29	44.8%	3	33.3%	-	-	-	NULL
QARS	5859	genome.wustl.edu	37	3	49138082	49138082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005051.1	-1	reviewed	p.R301H	1.000	221	0%	169	49.7%	211	40.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
RNF123	63891	genome.wustl.edu	37	3	49758236	49758236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022064.2	+1	reviewed	p.A1216V	0.956	96	0%	49	46.9%	54	46.2%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
CDHR4	389118	genome.wustl.edu	37	3	49832745	49832745	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007540.2	-1	provisional	p.R305	0.512	87	0%	39	41%	0	-	-	-	-	HMMSmart_SM00112,superfamily_Cadherin-like
CDHR4	389118	genome.wustl.edu	37	3	49832770	49832770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007540.2	-1	provisional	p.R297H	0.000	92	0%	39	48.7%	0	-	possibly_damaging(0.609)	tolerated(0.11)	deleterious(0.483)	HMMSmart_SM00112,superfamily_Cadherin-like
HYAL2	8692	genome.wustl.edu	37	3	50357653	50357653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003773.4	-1	reviewed	p.D90N	0.002	103	0%	61	19.7%	116	33.6%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases
C3orf18	51161	genome.wustl.edu	37	3	50598482	50598482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016210.3	-1	validated	p.R92C	0.996	113	0%	77	46.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HEMK1	51409	genome.wustl.edu	37	3	50617817	50617817	+	Missense_Mutation	SNP	G	G	A	rs192523417	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016173.3	+1	validated	p.R329Q	1.000	157	0%	87	43.7%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53335
GRM2	2912	genome.wustl.edu	37	3	51747058	51747058	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000839.3	+1	reviewed	p.S340	0.984	43	0%	35	71.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
RPL29	6159	genome.wustl.edu	37	3	52028047	52028047	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000992.2	-1	reviewed	p.S66	0.119	83	0%	55	18.2%	1822	19.2%	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52422865	52422865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.T3136M	0.990	75	0%	47	42.6%	7	42.8%	possibly_damaging(0.921)	tolerated(0.11)	deleterious(0.643)	NULL
STAB1	23166	genome.wustl.edu	37	3	52537022	52537022	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015136.2	+1	reviewed	p.P197	0.000	29	0%	14	50%	1	0%	-	-	-	HMMSmart_SM00180,superfamily_EGF/Laminin
STAB1	23166	genome.wustl.edu	37	3	52553985	52553985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015136.2	+1	reviewed	p.R1754Q	0.000	54	0%	31	32.3%	3	0%	benign(0.001)	tolerated(0.74)	neutral(0.002)	HMMPfam_Fasciclin,superfamily_FAS1 domain
TMEM110	375346	genome.wustl.edu	37	3	52878929	52878929	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198563.1	-1	provisional	p.V152	0.754	97	0%	51	47.1%	9	66.6%	-	-	-	NULL
TMEM110	375346	genome.wustl.edu	37	3	52883867	52883867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198563.1	-1	provisional	p.R123H	0.998	80	0%	48	41.7%	7	28.5%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
SFMBT1	51460	genome.wustl.edu	37	3	52946623	52946623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005158.1	-1	reviewed	p.R554H	1.000	209	0%	172	32.6%	29	31%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRTM1	57408	genome.wustl.edu	37	3	54952737	54952737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020678.2	-1	provisional	p.A263T	0.000	129	0%	86	54.7%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57343248	57343248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.R2839Q	0.000	378	0%	289	47.4%	0	-	benign(0.002)	tolerated(0.51)	neutral(0.009)	HMMPfam_Dynein_heavy
ACOX2	8309	genome.wustl.edu	37	3	58510225	58510225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003500.3	-1	reviewed	p.C485Y	1.000	93	0%	84	41.7%	2	50%	probably_damaging(0.995)	tolerated(0.53)	neutral(0.465)	NULL
FAM107A	11170	genome.wustl.edu	37	3	58552955	58552955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076778.1	-1	validated	p.R103W	1.000	39	0%	24	45.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1151
PTPRG	5793	genome.wustl.edu	37	3	62189352	62189352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.S628L	0.003	64	0%	62	50%	21	57.1%	benign(0)	deleterious(0)	neutral(0.445)	NULL
SUCLG2	8801	genome.wustl.edu	37	3	67579530	67579530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003848.3	-1	reviewed	p.G103S	1.000	429	0%	286	14.7%	68	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-grasp_2,superfamily_SSF56059
ARL6IP5	10550	genome.wustl.edu	37	3	69151100	69151100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006407.3	+1	reviewed	p.R96H	1.000	383	0.3%	246	47.6%	127	46.4%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_PRA1
ARL6IP5	10550	genome.wustl.edu	37	3	69153775	69153775	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006407.3	+1	reviewed	p.K185	1.000	92	0%	79	12.7%	126	6.3%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78663874	78663874	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.A1453	0.032	362	0.6%	266	46.6%	30	56.6%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78680340	78680340	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000472273	-1	known	p.A126V	0.993	707	0%	552	39.1%	15	60%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78706353	78706353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.V837M	0.998	138	0%	107	49.5%	10	80%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DHFRL1	200895	genome.wustl.edu	37	3	93780239	93780239	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176815.3	-1	provisional	p.T39	1.000	196	0%	132	49.2%	7	57.1%	-	-	-	HMMPfam_DHFR_1,superfamily_SSF53597
DHFRL1	200895	genome.wustl.edu	37	3	93780308	93780308	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176815.3	-1	provisional	p.G16	1.000	87	0%	51	15.7%	6	33.3%	-	-	-	HMMPfam_DHFR_1,superfamily_SSF53597
DCBLD2	131566	genome.wustl.edu	37	3	98541148	98541148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080927.3	-1	validated	p.G252S	1.000	177	0%	112	35.7%	22	63.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
NIT2	56954	genome.wustl.edu	37	3	100057990	100057990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020202.4	+1	validated	p.R23C	1.000	246	0%	192	42.7%	53	35.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse
GPR128	84873	genome.wustl.edu	37	3	100352194	100352194	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032787.2	+1	validated	p.N140	0.001	64	0%	54	37%	0	-	-	-	-	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101390047	101390047	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	p.N235	1.000	121	0%	114	44.7%	7	57.1%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ALCAM	214	genome.wustl.edu	37	3	105266355	105266355	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000465413	+1	known	p.R215C	1.000	98	0%	73	42.5%	24	41.6%	-	-	-	superfamily_Immunoglobulin
GOLGB1	2804	genome.wustl.edu	37	3	121386324	121386324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.R3180W	0.280	95	0%	69	50.7%	60	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KPNA1	3836	genome.wustl.edu	37	3	122156057	122156057	+	Missense_Mutation	SNP	G	G	A	rs192240632	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002264.3	-1	reviewed	p.T361M	1.000	332	0%	255	40%	23	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
SEMA5B	54437	genome.wustl.edu	37	3	122629720	122629720	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451541	-1	known	p.R134Q	1.000	250	0.8%	176	18.8%	0	-	-	-	-	NULL
ADCY5	111	genome.wustl.edu	37	3	123008730	123008730	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.S1133	0.001	160	0%	103	39.8%	32	56.2%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY5	111	genome.wustl.edu	37	3	123010146	123010146	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.D1047	0.990	40	0%	39	41%	24	50%	-	-	-	HMMSmart_CYCc
KALRN	8997	genome.wustl.edu	37	3	124044882	124044882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.A381V	1.000	97	0%	69	47.8%	5	60%	benign(0.408)	deleterious(0.04)	deleterious(0.481)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124418771	124418771	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354186	+1	known	p.S2598L	0.702	189	0%	126	51.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ITGB5	3693	genome.wustl.edu	37	3	124483290	124483290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002213.3	-1	provisional	p.R751Q	1.000	102	0%	91	53.8%	93	41.9%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_Integrin_b_cyt
ALDH1L1	10840	genome.wustl.edu	37	3	125836930	125836930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012190.2	-1	reviewed	p.G634S	0.998	83	0%	57	42.1%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ZXDC	79364	genome.wustl.edu	37	3	126160635	126160635	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025112.4	-1	validated	p.A789	0.004	51	0%	40	42.5%	24	62.5%	-	-	-	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126708141	126708141	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.T212	0.465	49	0%	30	40%	9	33.3%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ABTB1	80325	genome.wustl.edu	37	3	127398982	127398982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172027.2	+1	reviewed	p.R395Q	1.000	61	0%	56	44.6%	37	51.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EEFSEC	60678	genome.wustl.edu	37	3	128060258	128060258	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021937.3	+1	validated	p.P323	0.001	130	0.8%	96	43.8%	23	47.8%	-	-	-	NULL
KIAA1257	57501	genome.wustl.edu	37	3	128707683	128707683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020741.2	-1	predicted	p.R114H	0.002	339	0%	292	46.6%	0	-	benign(0.161)	deleterious(0)	neutral(0.459)	NULL
RAB43	339122	genome.wustl.edu	37	3	128813996	128813996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198490.1	-1	validated	p.T74M	1.000	165	0%	84	57.1%	16	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL6A6	131873	genome.wustl.edu	37	3	130368380	130368380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102608.1	+1	provisional	p.V1903M	0.096	55	0%	36	47.2%	0	-	benign(0.225)	-	-	HMMSmart_SM00327,superfamily_vWA-like
ASTE1	28990	genome.wustl.edu	37	3	130743388	130743388	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014065.2	-1	validated	p.R255*	1.000	135	0%	95	43.2%	3	0%	-	-	-	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132176197	132176197	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.L478	0.883	319	0%	281	44.1%	8	25%	-	-	-	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132219706	132219706	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.T1495	0.938	393	0%	277	49.5%	15	33.3%	-	-	-	superfamily_ARM repeat
BFSP2	8419	genome.wustl.edu	37	3	133119141	133119141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003571.2	+1	reviewed	p.R72C	1.000	37	0%	24	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAB6B	51560	genome.wustl.edu	37	3	133614253	133614253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016577.3	-1	validated	p.G20R	1.000	120	0%	78	37.2%	7	71.4%	unknown(0)	deleterious(0)	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
AMOTL2	51421	genome.wustl.edu	37	3	134089922	134089922	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016201.2	-1	reviewed	p.A118	0.001	72	0%	65	49.2%	30	56.6%	-	-	-	NULL
PCCB	5096	genome.wustl.edu	37	3	136047681	136047681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000532.4	+1	reviewed	p.F494L	1.000	209	0%	124	50%	105	42.8%	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
PIK3CB	5291	genome.wustl.edu	37	3	138409876	138409876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006219.1	-1	provisional	p.R668W	1.000	170	0%	127	44.1%	10	70%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
PIK3CB	5291	genome.wustl.edu	37	3	138453640	138453640	+	Missense_Mutation	SNP	G	G	A	rs148366420	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006219.1	-1	provisional	p.R270W	1.000	209	0%	163	50.3%	5	80%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,superfamily_SSF54236
SPSB4	92369	genome.wustl.edu	37	3	140785550	140785550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080862.1	+1	provisional	p.R202*	1.000	41	0%	33	33.3%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
ANKUB1	389161	genome.wustl.edu	37	3	149498216	149498216	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144960.1	-1	predicted	p.V87	1.000	367	0%	252	42.9%	0	-	-	-	-	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153905524	153905524	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015595.3	+1	validated	p.D513V	0.998	225	0%	152	19.1%	2	0%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
OTOL1	131149	genome.wustl.edu	37	3	161220969	161220969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080440.1	+1	provisional	p.A225T	0.991	45	0%	23	43.5%	0	-	unknown(0)	tolerated(0.31)	-	HMMPfam_Collagen
LRRIQ4	344657	genome.wustl.edu	37	3	169540596	169540596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080460.1	+1	provisional	p.R296Q	0.046	30	0%	18	44.4%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	superfamily_SSF52058
SLC7A14	57709	genome.wustl.edu	37	3	170216490	170216490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020949.2	-1	validated	p.A242V	0.995	94	0%	81	49.4%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_AA_permease
PLD1	5337	genome.wustl.edu	37	3	171394540	171394540	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342215	-1	known	p.W584*	1.000	107	0%	54	37%	1	0%	-	-	-	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182933832	182933832	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015078.2	-1	validated	p.Q807	0.720	538	0%	436	48.6%	0	-	-	-	-	HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CLCN2	1181	genome.wustl.edu	37	3	184072081	184072081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004366.4	-1	reviewed	p.A510V	1.000	20	0%	25	48%	14	28.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
BCL6	604	genome.wustl.edu	37	3	187449605	187449605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.T92I	1.000	113	0%	87	46%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
OSTN	344901	genome.wustl.edu	37	3	190967889	190967889	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198184.1	+1	provisional	p.R127	0.418	217	0%	193	48.2%	0	-	-	-	-	NULL
ATP13A3	79572	genome.wustl.edu	37	3	194169270	194169270	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024524.3	-1	validated	p.R356*	1.000	270	0%	207	46.9%	7	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
MUC4	4585	genome.wustl.edu	37	3	195492174	195492174	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.R4461*	0.048	41	0%	14	42.9%	6	33.3%	-	-	-	HMMPfam_AMOP,HMMSmart_SM00723
MUC4	4585	genome.wustl.edu	37	3	195505984	195505984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.G4028D	0.044	594	0%	416	42.3%	18	38.8%	probably_damaging(0.994)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195511212	195511212	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.H2413	0.039	892	0%	577	23.7%	17	17.6%	-	-	-	NULL
KIAA0226	9711	genome.wustl.edu	37	3	197431522	197431522	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413360	-1	known	p.T97A	0.851	71	0%	50	48%	3	66.6%	-	-	-	NULL
ZNF732	654254	genome.wustl.edu	37	4	265323	265323	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.T441	0.999	184	0%	142	44.4%	0	-	-	-	-	superfamily_SSF57667
GAK	2580	genome.wustl.edu	37	4	905555	905555	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005255.2	-1	validated	p.P96	0.997	169	0%	123	44.7%	25	24%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
SLC26A1	10861	genome.wustl.edu	37	4	985320	985320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022042.2	-1	reviewed	p.R58C	0.000	16	0.000	9	0.667	3	33.3%	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	NULL
CRIPAK	285464	genome.wustl.edu	37	4	1388892	1388892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175918.3	+1	validated	p.S198L	0.001	239	0%	99	48.5%	46	63%	benign(0.002)	-	-	NULL
TACC3	10460	genome.wustl.edu	37	4	1730384	1730384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006342.1	+1	reviewed	p.G419R	0.003	59	0%	52	44.2%	59	50.8%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
FGFR3	2261	genome.wustl.edu	37	4	1807389	1807389	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000142.4	+1	reviewed	p.T546	0.949	82	0%	47	53.2%	102	50.9%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RNF4	6047	genome.wustl.edu	37	4	2515463	2515463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002938.3	+1	reviewed	p.R164C	1.000	269	0%	215	47%	91	56%	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
RGS12	6002	genome.wustl.edu	37	4	3415869	3415869	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198229.2	+1	reviewed	p.S697	0.982	34	0%	19	52.6%	17	47%	-	-	-	superfamily_Regulator of G-protein signaling RGS
RGS12	6002	genome.wustl.edu	37	4	3432230	3432230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198229.2	+1	reviewed	p.R1221H	0.986	76	0%	50	56%	23	34.7%	benign(0.373)	deleterious(0.01)	deleterious(0.524)	NULL
ADRA2C	152	genome.wustl.edu	37	4	3768657	3768657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000683.3	+1	reviewed	p.S108	0.961	70	0%	55	67.3%	2	100%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP2R2C	5522	genome.wustl.edu	37	4	6349700	6349700	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020416.3	-1	reviewed	p.L221	0.994	318	0%	188	46.8%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
KIAA0232	9778	genome.wustl.edu	37	4	6863532	6863532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.A475T	1.000	51	0%	36	27.8%	4	25%	possibly_damaging(0.78)	deleterious(0.01)	deleterious(0.697)	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6865423	6865423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.R1105Q	1.000	235	0%	169	24.9%	19	36.8%	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	NULL
MIR95	407052	genome.wustl.edu	37	4	8007059	8007059	+	RNA	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385072	-1	known	NULL	0.998	76	0%	53	24.5%	0	-	-	-	-	-
ACOX3	8310	genome.wustl.edu	37	4	8383332	8383332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003501.2	-1	validated	p.A514T	0.868	266	0%	180	37.2%	19	36.8%	benign(0.051)	tolerated(0.14)	neutral(0.253)	HMMPfam_ACOX,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
WDR1	9948	genome.wustl.edu	37	4	10084714	10084714	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017491.3	-1	reviewed	p.S376	0.004	49	0%	32	62.5%	355	52.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
FAM184B	27146	genome.wustl.edu	37	4	17710767	17710767	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015688.1	-1	validated	p.Y214	0.007	46	0%	33	51.5%	0	-	-	-	-	NULL
SLIT2	9353	genome.wustl.edu	37	4	20512755	20512755	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.N351	1.000	123	0%	106	49.1%	12	41.6%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SLC34A2	10568	genome.wustl.edu	37	4	25678114	25678114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006424.2	+1	reviewed	p.V606I	0.000	51	0%	37	45.9%	111	45%	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
TBC1D1	23216	genome.wustl.edu	37	4	37904015	37904015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015173.2	+1	validated	p.R100H	0.163	159	0%	114	12.3%	3	0%	benign(0)	tolerated(0.94)	-	HMMSmart_SM00462,superfamily_PH domain-like
LIAS	11019	genome.wustl.edu	37	4	39474814	39474814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006859.2	+1	reviewed	p.R350H	1.000	339	0%	239	37.2%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF102114
GABRA4	2557	genome.wustl.edu	37	4	46995438	46995438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.V2I	1.000	58	0%	39	38.5%	0	-	benign(0.235)	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48567554	48567554	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.A1108	0.832	146	0%	107	35.5%	7	71.4%	-	-	-	NULL
LRRC66	339977	genome.wustl.edu	37	4	52861617	52861617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.A524V	0.000	79	0%	52	42.3%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
POLR2B	5431	genome.wustl.edu	37	4	57860570	57860570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000938.1	+1	reviewed	p.P82S	1.000	161	0%	94	40.4%	45	60%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
LOC644578	644578	genome.wustl.edu	37	4	64215684	64215684	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_927694.2	+1	model	p.K111	0.365	6	0.000	16	0.625	0	-	-	-	-	NULL
UGT2B11	10720	genome.wustl.edu	37	4	70078386	70078386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001073.1	-1	provisional	p.R259*	0.998	525	0%	432	41.2%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
PPEF2	5470	genome.wustl.edu	37	4	76811167	76811167	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006239.2	-1	reviewed	p.S120	1.000	478	0%	333	14.4%	0	-	-	-	-	HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
C4orf22	255119	genome.wustl.edu	37	4	81791203	81791203	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152770.1	+1	predicted	p.I130	0.818	232	0%	157	47.8%	0	-	-	-	-	NULL
COPS4	51138	genome.wustl.edu	37	4	83989593	83989593	+	Silent	SNP	G	G	A	rs189326692	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016129.2	+1	reviewed	p.A335	0.997	226	0.4%	173	49.1%	46	45.6%	-	-	-	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
WDFY3	23001	genome.wustl.edu	37	4	85660238	85660238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.R2167C	1.000	334	0%	271	47.6%	20	65%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM190A	401145	genome.wustl.edu	37	4	91229626	91229626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145065.1	+1	validated	p.R64H	1.000	225	0%	203	43.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDIT4L	115265	genome.wustl.edu	37	4	101109122	101109122	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145244.2	-1	provisional	p.T98	0.000	258	0.4%	213	43.7%	5	80%	-	-	-	HMMPfam_RTP801_C
EMCN	51705	genome.wustl.edu	37	4	101344481	101344481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016242.3	-1	validated	p.S166A	0.002	374	0.3%	227	44.1%	0	-	benign(0.256)	deleterious(0.04)	neutral(0.376)	HMMPfam_Endomucin
BANK1	55024	genome.wustl.edu	37	4	102994867	102994867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017935.4	+1	reviewed	p.K775N	1.000	211	0%	192	45.8%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFKB1	4790	genome.wustl.edu	37	4	103533626	103533626	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003998.3	+1	reviewed	p.Q819*	1.000	153	0.7%	119	37%	22	13.6%	-	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
DKK2	27123	genome.wustl.edu	37	4	107956620	107956620	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014421.2	-1	reviewed	p.G43	1.000	51	0%	46	50%	0	-	-	-	-	NULL
ALPK1	80216	genome.wustl.edu	37	4	113303616	113303616	+	Missense_Mutation	SNP	G	G	A	rs188866014	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.V62M	1.000	156	0%	106	47.2%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113539232	113539232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.G656R	0.000	237	0%	144	44.4%	2	50%	benign(0.404)	deleterious(0.04)	deleterious(0.479)	NULL
ANK2	287	genome.wustl.edu	37	4	114161659	114161659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.H238Y	1.000	321	0%	246	43.9%	0	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
BBS7	55212	genome.wustl.edu	37	4	122775894	122775894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176824.1	-1	reviewed	p.R228H	0.141	223	0%	188	48.4%	13	15.3%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
INTU	27152	genome.wustl.edu	37	4	128609010	128609010	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015693.3	+1	validated	p.P479	0.733	146	0%	113	46.9%	1	100%	-	-	-	NULL
USP38	84640	genome.wustl.edu	37	4	144133490	144133490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.R506Q	1.000	181	0%	132	12.9%	20	0%	benign(0.141)	tolerated(0.4)	neutral(0.028)	HMMPfam_UCH,superfamily_Cysteine proteinases
GYPE	2996	genome.wustl.edu	37	4	144797984	144797984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002102.3	-1	reviewed	p.A54V	0.051	458	0%	408	49.3%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
SLC10A7	84068	genome.wustl.edu	37	4	147431081	147431081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029998.3	-1	validated	p.E102K	1.000	176	0%	124	10.5%	3	33.3%	benign(0.007)	tolerated(0.41)	neutral(0.015)	HMMPfam_SBF
DCLK2	166614	genome.wustl.edu	37	4	151023640	151023640	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.Y144	0.942	49	0%	59	37.3%	0	-	-	-	-	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
DCLK2	166614	genome.wustl.edu	37	4	151153924	151153924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.R504G	1.000	248	0%	189	41.3%	0	-	benign(0.187)	tolerated(0.14)	neutral(0.267)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRIM2	23321	genome.wustl.edu	37	4	154197067	154197067	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015271.3	+1	validated	p.A80P	0.987	231	0%	124	40.3%	58	41.3%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
GUCY1A3	2982	genome.wustl.edu	37	4	156643334	156643334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000856.4	+1	validated	p.T621S	1.000	167	0%	138	50.7%	7	14.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
GRIA2	2891	genome.wustl.edu	37	4	158284077	158284077	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.R845*	1.000	468	0.2%	359	24.2%	2	50%	-	-	-	NULL
FSTL5	56884	genome.wustl.edu	37	4	162697155	162697155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020116.3	-1	validated	p.I161V	0.192	207	0%	162	55.6%	0	-	benign(0)	tolerated(1)	-	NULL
ANP32C	23520	genome.wustl.edu	37	4	165118483	165118483	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012403.1	-1	reviewed	p.Y127	0.998	484	0%	366	41.5%	0	-	-	-	-	superfamily_L domain-like
TRIM75	391714	genome.wustl.edu	37	4	165981141	165981141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322402	+1	known	p.Q281R	0.542	45	0%	36	38.9%	0	-	-	-	-	NULL
ADAM29	11086	genome.wustl.edu	37	4	175897871	175897871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130703.1	+1	reviewed	p.R399C	0.468	436	0%	402	43%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
NEIL3	55247	genome.wustl.edu	37	4	178281730	178281730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018248.2	+1	validated	p.R512C	0.998	159	0%	104	48.1%	6	66.6%	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMPfam_zf-GRF
ODZ3	55714	genome.wustl.edu	37	4	183696257	183696257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.R1752Q	1.000	102	0%	64	42.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ConA_like_lec_gl
CYP4V2	285440	genome.wustl.edu	37	4	187115693	187115693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207352.3	+1	reviewed	p.R85H	0.046	230	0%	196	31.6%	8	25%	probably_damaging(0.965)	tolerated(0.05)	deleterious(0.752)	HMMPfam_p450,superfamily_Cytochrome P450
FAT1	2195	genome.wustl.edu	37	4	187510104	187510104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.A4470V	0.800	250	0%	190	46.8%	2	0%	benign(0.002)	tolerated(0.27)	neutral(0.034)	NULL
ZFP42	132625	genome.wustl.edu	37	4	188924187	188924187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174900.3	+1	validated	p.V76I	0.245	182	0%	118	38.1%	0	-	benign(0)	tolerated(1)	-	NULL
PLEKHG4B	153478	genome.wustl.edu	37	5	171406	171406	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052909.3	+1	validated	p.Y943	0.998	30	0%	21	47.6%	8	37.5%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
LPCAT1	79888	genome.wustl.edu	37	5	1463838	1463838	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024830.3	-1	validated	p.N511	0.989	183	0%	133	43.6%	30	56.6%	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5463978	5463978	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.R1511*	0.914	60	0%	40	37.5%	11	45.4%	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13766245	13766245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R3314H	0.995	127	0%	85	56.5%	0	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13844999	13844999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.A1740T	1.000	212	0%	145	46.2%	0	-	possibly_damaging(0.804)	tolerated(0.13)	deleterious(0.555)	HMMPfam_DHC_N2
FBXL7	23194	genome.wustl.edu	37	5	15937245	15937245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012304.3	+1	reviewed	p.R476C	1.000	12	0%	22	36.4%	8	62.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00367,superfamily_RNI-like
MARCH11	441061	genome.wustl.edu	37	5	16091144	16091144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102562.1	-1	provisional	p.A247D	1.000	146	0%	115	43.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NPR3	4883	genome.wustl.edu	37	5	32774841	32774841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000908.2	+1	validated	p.D363N	1.000	294	0%	217	44.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
RXFP3	51289	genome.wustl.edu	37	5	33937183	33937183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016568.3	+1	validated	p.R113H	1.000	146	0%	104	45.2%	0	-	possibly_damaging(0.789)	tolerated(0.05)	deleterious(0.641)	HMMPfam_7tm_1,superfamily_SSF81321
SLC45A2	51151	genome.wustl.edu	37	5	33951725	33951725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016180.3	-1	reviewed	p.E364K	0.984	149	0%	102	40.2%	0	-	benign(0.115)	deleterious(0.02)	neutral(0.392)	superfamily_MFS general substrate transporter
DNAJC21	134218	genome.wustl.edu	37	5	34954762	34954762	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194283.3	+1	validated	p.S558	0.051	231	0%	180	43.3%	50	52%	-	-	-	NULL
SLC1A3	6507	genome.wustl.edu	37	5	36608665	36608665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004172.4	+1	reviewed	p.R47Q	1.000	144	0%	110	43.6%	4	0%	possibly_damaging(0.948)	tolerated(0.18)	neutral(0.447)	NULL
NIPBL	25836	genome.wustl.edu	37	5	37020924	37020924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.R1758Q	1.000	291	0%	162	45.1%	27	33.3%	probably_damaging(0.983)	tolerated(0.33)	neutral(0.453)	superfamily_ARM repeat
WDR70	55100	genome.wustl.edu	37	5	37516692	37516692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018034.2	+1	provisional	p.A306V	1.000	301	0.3%	198	46%	34	29.4%	benign(0.056)	deleterious(0)	neutral(0.448)	HMMSmart_WD40,superfamily_WD40_like
OSMR	9180	genome.wustl.edu	37	5	38933467	38933467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003999.2	+1	reviewed	p.R954H	0.000	143	0%	88	33%	2	100%	benign(0.005)	tolerated(0.15)	neutral(0.241)	NULL
CARD6	84674	genome.wustl.edu	37	5	40853918	40853918	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.A828	0.004	107	0%	66	12.1%	1	0%	-	-	-	NULL
C6	729	genome.wustl.edu	37	5	41176678	41176678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000065.2	-1	reviewed	p.R356Q	0.746	240	0%	206	50.5%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN
HCN1	348980	genome.wustl.edu	37	5	45262234	45262234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	p.A821V	0.003	74	0%	61	50.8%	0	-	benign(0.076)	tolerated(0.1)	neutral(0.292)	NULL
ITGA1	3672	genome.wustl.edu	37	5	52227884	52227884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181501.1	+1	reviewed	p.E927K	0.998	385	0%	262	43.9%	7	0%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
DDX4	54514	genome.wustl.edu	37	5	55094338	55094338	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.T518	0.000	428	0%	312	51.6%	0	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP3K1	4214	genome.wustl.edu	37	5	56161222	56161222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.R364Q	1.000	188	0%	141	48.2%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SWIM
LRRC70	100130733	genome.wustl.edu	37	5	61875709	61875709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181506.4	+1	validated	p.P148	0.977	114	0%	79	34.2%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
MAST4	375449	genome.wustl.edu	37	5	66427716	66427716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015183.2	+1	validated	p.T488M	1.000	271	0.7%	235	17.4%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CD180	4064	genome.wustl.edu	37	5	66479395	66479395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005582.2	-1	validated	p.D426N	1.000	409	0%	340	43.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
BDP1	55814	genome.wustl.edu	37	5	70785301	70785301	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.T428	0.052	107	0%	102	16.7%	2	0%	-	-	-	NULL
MCCC2	64087	genome.wustl.edu	37	5	70888803	70888803	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022132.4	+1	reviewed	p.V60	0.769	155	0%	122	42.6%	44	38.6%	-	-	-	superfamily_ClpP/crotonase
TMEM171	134285	genome.wustl.edu	37	5	72419402	72419402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173490.6	+1	validated	p.V68M	0.379	165	0%	124	40.3%	0	-	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	NULL
TMEM174	134288	genome.wustl.edu	37	5	72469592	72469592	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153217.2	+1	validated	p.A174	0.000	205	0%	152	52%	0	-	-	-	-	NULL
JMY	133746	genome.wustl.edu	37	5	78573810	78573810	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152405.4	+1	validated	p.S370	1.000	120	0%	103	52.4%	5	60%	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79027526	79027526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.S980T	0.938	187	0%	140	45%	0	-	benign(0.34)	deleterious(0.03)	deleterious(0.472)	NULL
MTX3	345778	genome.wustl.edu	37	5	79279513	79279513	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010891.4	-1	validated	p.S311	0.989	231	0%	219	50.2%	4	75%	-	-	-	NULL
ATP6AP1L	92270	genome.wustl.edu	37	5	81608538	81608538	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017971.1	+1	provisional	p.G80	0.840	245	0%	176	53.4%	8	12.5%	-	-	-	HMMPfam_ATP-synt_S1
VCAN	1462	genome.wustl.edu	37	5	82849252	82849252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.R3188H	0.999	137	0%	89	53.9%	9	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TMEM161B	153396	genome.wustl.edu	37	5	87494906	87494906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153354.3	-1	provisional	p.R326W	0.995	135	0%	136	44.9%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tmemb_161AB
ELL2	22936	genome.wustl.edu	37	5	95234053	95234053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012081.5	-1	validated	p.K472N	1.000	353	0%	282	46.8%	2	0%	unknown(0)	tolerated(0.1)	-	NULL
ERAP2	64167	genome.wustl.edu	37	5	96237302	96237302	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130140.1	+1	validated	p.D555	0.428	96	0%	80	36.2%	2	50%	-	-	-	NULL
GIN1	54826	genome.wustl.edu	37	5	102440408	102440408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017676.2	-1	validated	p.V159A	0.001	229	0%	168	57.7%	3	66.6%	benign(0.004)	tolerated(0.2)	neutral(0.049)	HMMPfam_rve,superfamily_Ribonuclease H-like
ZRSR1	7310	genome.wustl.edu	37	5	112228580	112228580	+	Missense_Mutation	SNP	G	G	A	rs142725524	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391338	+1	known	p.R415H	0.000	107	0.9%	93	15.1%	0	-	unknown(0)	tolerated(0.28)	-	NULL
MCC	4163	genome.wustl.edu	37	5	112364680	112364680	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085377.1	-1	reviewed	p.R944*	1.000	251	0%	178	47.8%	0	-	-	-	-	HMMPfam_MCC-bdg_PDZ
KCNN2	3781	genome.wustl.edu	37	5	113740190	113740190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021614.2	+1	reviewed	p.R213H	1.000	405	0%	270	47%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SK_channel
COMMD10	51397	genome.wustl.edu	37	5	115469838	115469838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016144.2	+1	provisional	p.A158V	1.000	259	0%	198	40.4%	21	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCaRG
DMXL1	1657	genome.wustl.edu	37	5	118484784	118484784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.G1088C	1.000	218	0%	168	45.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNCAIP	9627	genome.wustl.edu	37	5	121787079	121787079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005460.2	+1	reviewed	p.R846Q	0.264	133	0%	98	18.4%	0	-	benign(0.167)	deleterious(0.01)	neutral(0.421)	NULL
PRDM6	93166	genome.wustl.edu	37	5	122435547	122435547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136239.1	+1	validated	p.A264V	1.000	17	0%	15	60%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
FBN2	2201	genome.wustl.edu	37	5	127710443	127710443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.D658G	1.000	113	0%	82	36.6%	7	42.8%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
SHROOM1	134549	genome.wustl.edu	37	5	132158543	132158543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133456.2	-1	validated	p.R830Q	0.011	68	0%	50	52%	6	16.6%	probably_damaging(0.963)	tolerated(0.42)	neutral(0.420)	NULL
SHROOM1	134549	genome.wustl.edu	37	5	132161190	132161190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133456.2	-1	validated	p.A215T	0.001	11	0.000	9	0.444	0	-	benign(0.03)	tolerated(0.92)	neutral(0.002)	HMMPfam_ASD1
FSTL4	23105	genome.wustl.edu	37	5	132556644	132556644	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360575	-1	known	p.P67	0.000	40	0%	36	50%	0	-	-	-	-	NULL
PHF15	23338	genome.wustl.edu	37	5	133902204	133902204	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015288.4	+1	provisional	p.Q456	1.000	29	0%	35	54.3%	7	42.8%	-	-	-	NULL
DDX46	9879	genome.wustl.edu	37	5	134099757	134099757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014829.2	+1	reviewed	p.R61W	1.000	228	0%	127	44.1%	31	45.1%	unknown(0)	deleterious(0)	-	NULL
SMAD5	4090	genome.wustl.edu	37	5	135510305	135510305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398807	+1	known	p.R413Q	1.000	105	0%	96	54.2%	21	57.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
KIF20A	10112	genome.wustl.edu	37	5	137518143	137518143	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005733.2	+1	validated	p.T169	0.197	123	0%	119	42.9%	22	31.8%	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF20A	10112	genome.wustl.edu	37	5	137520620	137520620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005733.2	+1	validated	p.R603Q	0.996	194	0%	149	45.6%	17	52.9%	benign(0.155)	tolerated(0.31)	neutral(0.041)	NULL
EGR1	1958	genome.wustl.edu	37	5	137802977	137802977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001964.2	+1	reviewed	p.R280H	0.998	67	0%	44	68.2%	359	46.5%	unknown(0)	deleterious(0)	-	NULL
SIL1	64374	genome.wustl.edu	37	5	138286904	138286904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037633.1	-1	reviewed	p.A329T	0.974	35	0%	27	59.3%	61	37.7%	benign(0.012)	tolerated(0.24)	neutral(0.038)	superfamily_ARM-type_fold
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139917040	139917040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.P2365H	1.000	185	0%	129	45.7%	47	42.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
APBB3	10307	genome.wustl.edu	37	5	139938231	139938231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006051.3	-1	reviewed	p.R474Q	1.000	82	0%	63	49.2%	20	55%	probably_damaging(0.994)	tolerated(0.16)	deleterious(0.512)	NULL
HARS2	23438	genome.wustl.edu	37	5	140075141	140075141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012208.2	+1	reviewed	p.R150C	1.000	512	0%	356	41.9%	52	51.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
PCDHA3	56145	genome.wustl.edu	37	5	140182231	140182231	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.D483	0.824	95	0%	89	37.1%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140214152	140214152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.R62C	0.996	107	0%	59	44.1%	1	100%	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215534	140215534	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.P522	0.132	46	0%	53	54.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140216132	140216132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.R722W	0.984	128	0%	86	54.7%	1	100%	benign(0.258)	deleterious(0.01)	neutral(0.433)	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140256669	140256669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.R538C	1.000	91	0%	56	10.7%	18	0%	benign(0.326)	deleterious(0)	deleterious(0.546)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347930	140347930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018899.5	+1	reviewed	p.A527T	0.998	111	0%	76	51.3%	0	-	benign(0.016)	tolerated(0.06)	neutral(0.323)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140559181	140559181	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.Y522	0.990	136	0%	82	36.6%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140562944	140562944	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.D270	0.586	48	0%	60	43.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140595042	140595042	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018933.2	+1	reviewed	p.P449	0.011	152	0%	125	45.6%	2	50%	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
ENSG00000251462	0	genome.wustl.edu	37	5	140621591	140621591	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503443	-1	known	NULL	0.001	52	0%	51	39.2%	0	-	-	-	-	-
PCDHGA1	56114	genome.wustl.edu	37	5	140711803	140711803	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018912.2	+1	reviewed	p.R518*	0.216	163	0%	122	47.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140725311	140725311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.G571S	0.734	101	0%	64	42.2%	0	-	benign(0.394)	deleterious(0.03)	deleterious(0.491)	superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140746178	140746178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.A761T	0.788	212	0%	118	48.3%	0	-	benign(0.001)	tolerated(1)	-	NULL
PCDHGB3	56102	genome.wustl.edu	37	5	140750157	140750157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.L66M	0.724	69	0%	52	50%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140782704	140782704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.R62H	0.277	78	0%	54	46.3%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783170	140783170	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.G217	0.230	33	0%	29	34.5%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140794841	140794841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018913.2	+1	reviewed	p.A700V	0.993	129	0%	81	44.4%	44	38.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140811838	140811838	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003735.2	+1	reviewed	p.Y504	0.095	122	0%	104	48.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ARAP3	64411	genome.wustl.edu	37	5	141035632	141035632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.L1303I	1.000	449	0%	357	26.3%	32	21.8%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
DPYSL3	1809	genome.wustl.edu	37	5	146775201	146775201	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001387.2	-1	validated	p.P515	0.163	61	0%	52	46.2%	1	0%	-	-	-	NULL
ARHGEF37	389337	genome.wustl.edu	37	5	149001407	149001407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001669.2	+1	validated	p.R373W	0.112	129	0%	86	46.5%	8	25%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_BAR
PPARGC1B	133522	genome.wustl.edu	37	5	149216160	149216160	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434684	+1	known	p.V401I	0.042	43	2.3%	39	46.2%	2	50%	-	-	-	NULL
CSF1R	1436	genome.wustl.edu	37	5	149459633	149459633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005211.3	-1	reviewed	p.R192W	0.005	110	0%	84	45.2%	2	0%	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMSmart_IG,superfamily_SSF48726
SYNPO	11346	genome.wustl.edu	37	5	150029216	150029216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007286.5	+1	validated	p.R460H	0.999	21	0%	26	53.8%	9	22.2%	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	NULL
DCTN4	51164	genome.wustl.edu	37	5	150090796	150090796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135643.1	-1	validated	p.R440H	1.000	209	0%	140	45.7%	39	30.7%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_Dynactin_p62
ANXA6	309	genome.wustl.edu	37	5	150484810	150484810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001155.3	-1	reviewed	p.M612T	1.000	557	0%	430	42.1%	15	20%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Annexin,HMMPfam_Annexin
ANXA6	309	genome.wustl.edu	37	5	150497319	150497319	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001155.3	-1	reviewed	p.T506	1.000	128	0%	86	50%	12	0%	-	-	-	superfamily_Annexin
ANXA6	309	genome.wustl.edu	37	5	150502534	150502534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001155.3	-1	reviewed	p.R393C	1.000	258	0%	161	51.6%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
FAT2	2196	genome.wustl.edu	37	5	150924607	150924607	+	Silent	SNP	C	C	T	rs192320051	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.A2027	0.000	150	0%	98	46.9%	6	83.3%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
LARP1	23367	genome.wustl.edu	37	5	154092552	154092552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	p.A23T	0.012	175	0%	96	46.9%	0	-	unknown(0)	deleterious(0)	-	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154282708	154282708	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.V887D	0.998	221	0%	156	51.9%	18	61.1%	benign(0.005)	deleterious(0.03)	neutral(0.364)	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156533767	156533767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032782.3	-1	validated	p.R89C	0.000	166	0%	131	44.3%	1	0%	probably_damaging(0.983)	tolerated(0.19)	deleterious(0.478)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
EBF1	1879	genome.wustl.edu	37	5	158524086	158524086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024007.3	-1	validated	p.R63W	1.000	52	0%	36	55.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ODZ2	57451	genome.wustl.edu	37	5	167674055	167674055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.A2028	0.250	67	0%	42	50%	0	-	-	-	-	HMMPfam_RHS_repeat,superfamily_Concanavalin A-like lectins/glucanases
WWC1	23286	genome.wustl.edu	37	5	167858266	167858266	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.R699	0.117	61	0%	40	52.5%	53	50.9%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RARS	5917	genome.wustl.edu	37	5	167915656	167915656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002887.3	+1	reviewed	p.C32Y	0.106	170	0%	100	48%	14	50%	benign(0)	tolerated(1)	-	NULL
SLIT3	6586	genome.wustl.edu	37	5	168233469	168233469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.P306L	1.000	107	0%	68	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,superfamily_RNI-like
STC2	8614	genome.wustl.edu	37	5	172750224	172750224	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003714.2	-1	reviewed	p.H168	0.061	38	0%	26	19.2%	26	11.5%	-	-	-	HMMPfam_Stanniocalcin
C5orf47	133491	genome.wustl.edu	37	5	173416283	173416283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144954.1	+1	validated	p.R6Q	0.000	32	0%	17	47.1%	0	-	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	NULL
FAM153B	202134	genome.wustl.edu	37	5	175533089	175533089	+	Missense_Mutation	SNP	T	T	G	rs4868592	by2Hit2Allele	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079529.2	+1	validated	p.V263G	0.001	540	0%	387	13.7%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
CLTB	1212	genome.wustl.edu	37	5	175823488	175823488	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310418	-1	known	p.I170	0.999	385	0%	307	45.6%	1	0%	-	-	-	HMMPfam_Clathrin_lg_ch
GPRIN1	114787	genome.wustl.edu	37	5	176026769	176026769	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052899.2	-1	validated	p.R23*	0.007	33	0%	18	44.4%	8	62.5%	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176618958	176618958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.R334H	1.000	184	0%	153	20.9%	4	25%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
SLC34A1	6569	genome.wustl.edu	37	5	176813246	176813246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003052.4	+1	reviewed	p.R95H	0.000	95	0%	48	31.2%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
GRK6	2870	genome.wustl.edu	37	5	176860632	176860632	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002082.3	+1	reviewed	p.A231	0.000	166	0%	96	40.6%	43	51.1%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DDX41	51428	genome.wustl.edu	37	5	176939150	176939150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016222.2	-1	reviewed	p.P560L	1.000	63	0%	49	51%	152	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RMND5B	64777	genome.wustl.edu	37	5	177569935	177569935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022762.3	+1	provisional	p.A123D	0.999	139	0%	91	59.3%	51	54.9%	possibly_damaging(0.585)	deleterious(0)	deleterious(0.646)	HMMSmart_SM00667
ZNF354C	30832	genome.wustl.edu	37	5	178506725	178506725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014594.1	+1	provisional	p.R431L	0.949	156	0%	125	45.6%	4	0%	benign(0.098)	deleterious(0.03)	neutral(0.372)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ADAMTS2	9509	genome.wustl.edu	37	5	178541254	178541254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014244.2	-1	reviewed	p.G1084C	0.980	167	0%	111	27%	4	0%	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	NULL
MGAT4B	11282	genome.wustl.edu	37	5	179225525	179225525	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054013.3	-1	reviewed	p.V485	0.995	67	0%	57	40.4%	224	34.3%	possibly_damaging(0.86)	-	-	NULL
WRNIP1	56897	genome.wustl.edu	37	6	2783702	2783702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020135.2	+1	reviewed	p.A517T	1.000	121	0%	81	49.4%	121	46.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100288376	100288376	genome.wustl.edu	37	6	2948568	2948568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342609.1	+1	model	p.V53I	0.000	51	0%	26	38.5%	160	48.1%	-	-	-	NULL
PSMG4	389362	genome.wustl.edu	37	6	3263988	3263988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128592.1	+1	validated	p.R82H	1.000	114	0%	86	53.5%	69	47.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FAM50B	26240	genome.wustl.edu	37	6	3850204	3850204	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012135.1	+1	provisional	p.Y53	1.000	46	0%	24	45.8%	0	-	-	-	-	NULL
RREB1	6239	genome.wustl.edu	37	6	7211817	7211817	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.D194	0.000	233	0%	168	48.2%	28	46.4%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7584150	7584150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.V2219I	0.390	177	0.6%	131	48.9%	321	53.8%	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00250,superfamily_Plakin repeat
DSP	1832	genome.wustl.edu	37	6	7585410	7585410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.R2639W	0.940	45	0%	35	45.7%	392	44.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00250,superfamily_Plakin repeat
SLC35B3	51000	genome.wustl.edu	37	6	8420991	8420991	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142540.1	-1	validated	p.L215	0.001	217	0%	138	44.2%	18	16.6%	-	-	-	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE
HIVEP1	3096	genome.wustl.edu	37	6	12120204	12120204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.L59P	1.000	123	0%	95	52.6%	1	100%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
MRS2	57380	genome.wustl.edu	37	6	24403288	24403288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020662.2	+1	validated	p.R5H	0.306	22	0%	22	50%	36	47.2%	possibly_damaging(0.867)	deleterious(0.01)	deleterious(0.742)	NULL
ALDH5A1	7915	genome.wustl.edu	37	6	24528249	24528249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170740.1	+1	reviewed	p.V413I	0.958	168	0.6%	131	32.1%	11	36.3%	benign(0.005)	tolerated(0.3)	neutral(0.029)	HMMPfam_Aldedh,superfamily_ALDH-like
HIST1H2BA	255626	genome.wustl.edu	37	6	25727239	25727239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170610.2	+1	reviewed	p.R35C	0.612	642	0.2%	583	50.6%	0	-	unknown(0)	deleterious(0.04)	-	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
HFE	3077	genome.wustl.edu	37	6	26093013	26093013	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000410.3	+1	reviewed	p.W239*	0.997	196	0%	121	48.8%	4	0%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
BTN2A2	10385	genome.wustl.edu	37	6	26392964	26392964	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006995.3	+1	reviewed	p.G447	0.004	353	0%	251	45%	8	12.5%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
HIST1H2AG	8969	genome.wustl.edu	37	6	27101160	27101160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021064.4	+1	reviewed	p.A104T	1.000	258	0%	161	49.1%	2	50%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMSmart_SM00414,superfamily_Histone-fold
ZNF192	7745	genome.wustl.edu	37	6	28120928	28120928	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006298.2	+1	validated	p.N290	1.000	157	0%	108	45.4%	8	25%	-	-	-	NULL
NKAPL	222698	genome.wustl.edu	37	6	28228281	28228281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007531.1	+1	provisional	p.R378*	1.000	392	0%	283	45.2%	0	-	-	-	-	HMMPfam_DUF926
GPX6	257202	genome.wustl.edu	37	6	28478591	28478591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182701.1	-1	reviewed	p.A60T	0.003	166	0%	131	31.3%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_GSHPx,superfamily_Thioredoxin-like
PPP1R10	5514	genome.wustl.edu	37	6	30574379	30574379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002714.2	-1	reviewed	p.R167Q	0.846	145	0%	100	42%	46	45.6%	benign(0.374)	tolerated(0.33)	neutral(0.143)	NULL
TUBB	203068	genome.wustl.edu	37	6	30691166	30691166	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178014.2	+1	provisional	p.G109	0.860	120	0%	73	38.4%	1275	47.3%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PRRC2A	7916	genome.wustl.edu	37	6	31598379	31598379	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.R756*	1.000	153	0%	97	15.5%	76	2.6%	-	-	-	NULL
TNXB	7148	genome.wustl.edu	37	6	32023680	32023680	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.Y2805	0.969	35	2.9%	26	50%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
HLA-DPB1	3115	genome.wustl.edu	37	6	33053612	33053612	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002121.4	+1	reviewed	p.L235	0.973	281	0%	223	52%	58	17.2%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZBTB22	9278	genome.wustl.edu	37	6	33283190	33283190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145338.1	-1	validated	p.R502W	1.000	57	0%	63	55.6%	49	46.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DAXX	1616	genome.wustl.edu	37	6	33287888	33287888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141970.1	-1	reviewed	p.E467D	0.883	407	0%	288	15.3%	51	11.7%	unknown(0)	tolerated(0.13)	-	HMMPfam_Daxx
ZBTB9	221504	genome.wustl.edu	37	6	33424240	33424240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152735.3	+1	validated	p.R455C	1.000	75	0%	42	50%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
ITPR3	3710	genome.wustl.edu	37	6	33625713	33625713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.A96V	1.000	233	0%	207	42.5%	50	52%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_Ins145_P3_rec
SLC26A8	116369	genome.wustl.edu	37	6	35911811	35911811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052961.2	-1	reviewed	p.R927C	0.000	382	0%	276	46.7%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
PNPLA1	285848	genome.wustl.edu	37	6	36260897	36260897	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145716.1	+1	validated	p.R71	0.896	146	0%	117	41.9%	0	-	-	-	-	HMMPfam_Patatin
C6orf222	389384	genome.wustl.edu	37	6	36290184	36290184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010903.4	-1	validated	p.A503T	0.001	148	0.7%	95	45.3%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
CCDC167	154467	genome.wustl.edu	37	6	37452902	37452902	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138493.2	-1	validated	p.H37	0.000	59	0%	38	36.8%	66	53%	-	-	-	NULL
GLO1	2739	genome.wustl.edu	37	6	38654685	38654685	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006708.2	-1	reviewed	p.T50	0.949	152	0%	107	13.1%	101	7.9%	-	-	-	HMMPfam_Glyoxalase,PatternScan_GLYOXALASE_I_1,superfamily_SSF54593
DNAH8	1769	genome.wustl.edu	37	6	38810210	38810210	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.G1294	0.971	306	0%	243	45.3%	0	-	-	-	-	HMMPfam_DHC_N2
KCNK5	8645	genome.wustl.edu	37	6	39159104	39159104	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003740.3	-1	reviewed	p.T354	0.964	59	0%	39	46.2%	5	20%	-	-	-	NULL
KCNK5	8645	genome.wustl.edu	37	6	39159383	39159383	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003740.3	-1	reviewed	p.R261	0.999	65	0%	49	61.2%	5	40%	-	-	-	superfamily_SSF81324
DAAM2	23500	genome.wustl.edu	37	6	39869229	39869229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015345.2	+1	validated	p.R987Q	1.000	32	0%	25	28%	0	-	probably_damaging(0.955)	tolerated(0.07)	deleterious(0.718)	HMMSmart_SM00498,superfamily_Formin homology 2 domain (FH2 domain)
CCND3	896	genome.wustl.edu	37	6	41903836	41903836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001760.3	-1	reviewed	p.R241W	0.954	78	0%	66	47%	37	56.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cyclin_C,superfamily_Cyclin_like
TRERF1	55809	genome.wustl.edu	37	6	42200618	42200618	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033502.2	-1	reviewed	p.R1027*	1.000	109	0%	78	56.4%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PTK7	5754	genome.wustl.edu	37	6	43096864	43096864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002821.3	+1	reviewed	p.R77W	0.990	40	0%	25	48%	67	47.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PTK7	5754	genome.wustl.edu	37	6	43126632	43126632	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000489707	+1	known	p.R228H	0.682	122	0%	60	41.7%	147	49.6%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
PTK7	5754	genome.wustl.edu	37	6	43127542	43127542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002821.3	+1	reviewed	p.R964C	1.000	142	0%	82	45.1%	155	54.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C6orf108	10591	genome.wustl.edu	37	6	43193753	43193753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199184.1	-1	reviewed	p.P132T	0.000	17	0%	15	33.3%	13	38.4%	benign(0.007)	-	-	HMMPfam_Nuc_deoxyrib_tr
TTBK1	84630	genome.wustl.edu	37	6	43222838	43222838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032538.1	+1	validated	p.A210T	1.000	180	0%	134	43.3%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GTPBP2	54676	genome.wustl.edu	37	6	43589779	43589779	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432918	-1	known	p.R100C	0.119	212	0%	132	20.5%	49	16.3%	-	-	-	superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
TNFRSF21	27242	genome.wustl.edu	37	6	47253783	47253783	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014452.3	-1	reviewed	p.P215	0.000	176	0%	131	40.5%	82	52.4%	-	-	-	NULL
MCM3	4172	genome.wustl.edu	37	6	52142395	52142395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002388.3	-1	reviewed	p.G324E	1.000	163	0%	96	53.1%	106	56.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
HCRTR2	3062	genome.wustl.edu	37	6	55147036	55147036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001526.3	+1	reviewed	p.E373D	1.000	107	0%	86	11.6%	0	-	benign(0.096)	tolerated(0.12)	neutral(0.268)	superfamily_SSF81321
DST	667	genome.wustl.edu	37	6	56716220	56716220	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370754	-1	known	p.A200	0.380	221	0%	129	49.6%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_Calponin-homology domain CH-domain
COL9A1	1297	genome.wustl.edu	37	6	70992691	70992691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078485.3	-1	reviewed	p.A22V	0.019	117	0%	81	44.4%	0	-	unknown(0)	tolerated(0.33)	-	NULL
TBX18	9096	genome.wustl.edu	37	6	85453985	85453985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080508.1	-1	provisional	p.R333H	1.000	110	0%	71	23.9%	34	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_TBOX
MDN1	23195	genome.wustl.edu	37	6	90402224	90402224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.H3509N	1.000	73	1.4%	60	16.7%	10	40%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
KLHL32	114792	genome.wustl.edu	37	6	97533123	97533123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052904.3	+1	validated	p.R178H	1.000	147	0%	109	57.8%	2	0%	benign(0.091)	deleterious(0.03)	neutral(0.371)	HMMPfam_BACK
COQ3	51805	genome.wustl.edu	37	6	99828081	99828081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017421.3	-1	validated	p.R124G	1.000	101	0%	81	35.8%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PNISR	25957	genome.wustl.edu	37	6	99857170	99857170	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015491.1	-1	validated	p.W184*	1.000	337	0%	238	42.9%	33	39.3%	-	-	-	NULL
SIM1	6492	genome.wustl.edu	37	6	100911316	100911316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.R10Q	1.000	500	0%	406	51.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_HLH,HMMSmart_HLH
PRDM1	639	genome.wustl.edu	37	6	106553745	106553745	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001198.3	+1	reviewed	p.N570	0.617	53	0%	44	54.5%	14	50%	-	-	-	superfamily_SSF57667
SEC63	11231	genome.wustl.edu	37	6	108197771	108197771	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007214.4	-1	reviewed	p.E677	1.000	379	0%	280	43.9%	86	52.3%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
FIG4	9896	genome.wustl.edu	37	6	110112620	110112620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014845.5	+1	reviewed	p.T741M	1.000	39	0%	41	41.5%	22	31.8%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
DDO	8528	genome.wustl.edu	37	6	110734612	110734612	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003649.2	-1	reviewed	p.T46	0.060	99	0%	78	55.1%	0	-	-	-	-	HMMPfam_DAO,superfamily_Nucleotide-binding domain
CDK19	23097	genome.wustl.edu	37	6	110942435	110942435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015076.3	-1	reviewed	p.G417R	0.820	49	0%	35	37.1%	9	11.1%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ROS1	6098	genome.wustl.edu	37	6	117631392	117631392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.R2096W	0.993	130	0%	109	46.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
HEY2	23493	genome.wustl.edu	37	6	126080483	126080483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012259.2	+1	reviewed	p.H183Q	0.954	29	0%	34	47.1%	101	71.2%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	NULL
THEMIS	387357	genome.wustl.edu	37	6	128150873	128150873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010923.2	-1	reviewed	p.A153T	0.984	249	0%	153	20.9%	0	-	benign(0.004)	tolerated(0.57)	neutral(0.006)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129573424	129573424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.M694V	1.000	132	0%	100	45%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB
CTAGE9	643854	genome.wustl.edu	37	6	132032036	132032036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145659.1	-1	provisional	p.S41L	0.000	1115	0%	912	31.1%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
MOXD1	26002	genome.wustl.edu	37	6	132694010	132694010	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015529.2	-1	validated	p.L180	0.003	175	0%	127	42.5%	1	0%	-	-	-	HMMPfam_Cu2_monooxygen,superfamily_PHM/PNGase F
TAAR1	134864	genome.wustl.edu	37	6	132966642	132966642	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138327.1	-1	provisional	p.G167	0.005	126	0%	72	44.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
HBS1L	10767	genome.wustl.edu	37	6	135371730	135371730	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006620.3	-1	reviewed	p.S33	0.027	69	0%	60	23.3%	41	7.3%	-	-	-	HMMPfam_DUF1916
BCLAF1	9774	genome.wustl.edu	37	6	136593180	136593180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014739.2	-1	reviewed	p.T666A	1.000	274	0%	219	15.1%	68	26.4%	possibly_damaging(0.478)	tolerated(0.5)	neutral(0.168)	NULL
REPS1	85021	genome.wustl.edu	37	6	139251114	139251114	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415951	-1	known	p.G131*	1.000	188	0%	113	46.9%	17	5.8%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
HECA	51696	genome.wustl.edu	37	6	139487597	139487597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016217.2	+1	reviewed	p.R150C	1.000	44	0%	22	50%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149826641	149826641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139126.2	-1	reviewed	p.R476Q	1.000	672	0%	575	46.6%	35	45.7%	unknown(0)	-	-	NULL
LRP11	84918	genome.wustl.edu	37	6	150174173	150174173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032832.5	-1	validated	p.A246V	0.997	63	0%	53	43.4%	9	11.1%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00089
LRP11	84918	genome.wustl.edu	37	6	150174287	150174287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032832.5	-1	validated	p.A208V	1.000	67	0%	38	52.6%	3	0%	benign(0.073)	tolerated(0.39)	neutral(0.021)	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158497732	158497732	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003898.3	+1	reviewed	p.Y789	1.000	57	0%	47	61.7%	1	0%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
TULP4	56995	genome.wustl.edu	37	6	158922878	158922878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020245.3	+1	validated	p.T728M	0.023	106	0%	75	45.3%	15	40%	benign(0.142)	tolerated(0.13)	neutral(0.265)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159660852	159660852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.T1495M	0.000	195	0%	176	38.1%	0	-	unknown(0)	tolerated(0.07)	-	NULL
PNLDC1	154197	genome.wustl.edu	37	6	160230078	160230078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173516.1	+1	provisional	p.R213H	0.997	237	0%	160	20.6%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
IGF2R	3482	genome.wustl.edu	37	6	160467666	160467666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.Q680	0.994	196	0%	126	40.5%	23	56.5%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
PLG	5340	genome.wustl.edu	37	6	161160209	161160209	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.R663*	0.001	325	0%	223	43%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PACRG	135138	genome.wustl.edu	37	6	163235240	163235240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152410.2	+1	reviewed	p.R73Q	1.000	184	0%	110	41.8%	0	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_ParcG
RPS6KA2	6196	genome.wustl.edu	37	6	166831775	166831775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006932.1	-1	reviewed	p.I634F	0.996	111	0%	83	44.6%	14	28.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FRMD1	79981	genome.wustl.edu	37	6	168465705	168465705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024919.3	-1	validated	p.H165L	1.000	43	0%	36	13.9%	0	-	benign(0.096)	deleterious(0.01)	neutral(0.413)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
ADAP1	11033	genome.wustl.edu	37	7	943775	943775	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453823	-1	known	p.M155T	0.797	136	0%	82	18.3%	30	20%	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
IQCE	23288	genome.wustl.edu	37	7	2617926	2617926	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152558.3	+1	validated	p.R172	0.721	84	0%	63	44.4%	12	66.6%	-	-	-	NULL
GNA12	2768	genome.wustl.edu	37	7	2770892	2770892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007353.2	-1	validated	p.E357K	1.000	165	0%	115	49.6%	49	57.1%	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	HMMPfam_G-alpha,superfamily_SSF52540
KIAA0415	9907	genome.wustl.edu	37	7	4825938	4825938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014855.1	+1	validated	p.P397L	0.969	79	0%	66	48.5%	32	53.1%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
RADIL	55698	genome.wustl.edu	37	7	4875989	4875989	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018059.4	-1	validated	p.H261	0.917	27	0%	26	38.5%	0	-	-	-	-	superfamily_SMAD/FHA domain
WIPI2	26100	genome.wustl.edu	37	7	5270528	5270528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015610.3	+1	validated	p.R439C	1.000	85	0%	77	16.9%	132	9%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
SLC29A4	222962	genome.wustl.edu	37	7	5340114	5340114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040661.1	+1	reviewed	p.R424H	0.998	51	0%	39	46.2%	45	37.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nucleoside_tran,superfamily_MFS general substrate transporter
TNRC18	84629	genome.wustl.edu	37	7	5347800	5347800	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080495.2	-1	provisional	p.A2948	0.989	71	0%	44	40.9%	176	43.7%	-	-	-	HMMSmart_SM00439
RNF216	54476	genome.wustl.edu	37	7	5781075	5781075	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207111.2	-1	reviewed	p.S191	0.000	370	0%	314	15.6%	14	50%	-	-	-	NULL
RSPH10B	222967	genome.wustl.edu	37	7	5966040	5966040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173565.3	-1	validated	p.P858T	0.003	1308	0%	1056	9.2%	1	0%	unknown(0)	tolerated(0.12)	-	NULL
ZNF853	54753	genome.wustl.edu	37	7	6662274	6662274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017560.1	+1	provisional	p.S551N	1.000	18	0%	13	61.5%	19	68.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL28A1	340267	genome.wustl.edu	37	7	7571300	7571300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037763.2	-1	validated	p.K120N	0.655	153	0%	111	49.5%	0	-	benign(0.406)	deleterious(0.04)	deleterious(0.479)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ENSG00000248675	0	genome.wustl.edu	37	7	10492277	10492277	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510654	-1	known	NULL	0.995	262	0%	178	44.4%	0	-	-	-	-	-
DGKB	1607	genome.wustl.edu	37	7	14217690	14217690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.R738W	0.081	90	0%	70	42.9%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_DAGK_acc,HMMSmart_SM00045
AGR2	10551	genome.wustl.edu	37	7	16841402	16841402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006408.3	-1	validated	p.S7P	1.000	351	0.3%	289	39.1%	147	65.9%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
HDAC9	9734	genome.wustl.edu	37	7	18875116	18875116	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178425.2	+1	reviewed	p.Q831	1.000	153	0%	85	38.8%	0	-	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
RAPGEF5	9771	genome.wustl.edu	37	7	22165271	22165271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012294.3	-1	validated	p.M676I	1.000	297	0%	222	41%	5	60%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RAPGEF5	9771	genome.wustl.edu	37	7	22184733	22184733	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000258735	-1	known	e9-1	0.004	193	0%	130	46.9%	5	60%	-	-	-	-
C7orf46	340277	genome.wustl.edu	37	7	23737908	23737908	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199136.3	+1	validated	p.T245	0.000	240	0%	163	39.9%	7	42.8%	-	-	-	NULL
STK31	56164	genome.wustl.edu	37	7	23830457	23830457	+	Silent	SNP	G	G	A	rs138551298	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031414.3	+1	reviewed	p.S884	0.998	293	0%	250	48.4%	0	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HOXA1	3198	genome.wustl.edu	37	7	27135378	27135378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005522.4	-1	reviewed	p.R52C	1.000	11	0%	20	55%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CREB5	9586	genome.wustl.edu	37	7	28547316	28547316	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182898.2	+1	reviewed	p.H84	0.258	118	0%	94	43.6%	0	-	-	-	-	NULL
NOD1	10392	genome.wustl.edu	37	7	30491780	30491780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006092.2	-1	reviewed	p.T418M	0.000	66	0%	47	66%	6	50%	possibly_damaging(0.87)	deleterious(0.03)	deleterious(0.703)	NULL
DPY19L1	23333	genome.wustl.edu	37	7	34981459	34981459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015283.1	-1	validated	p.A463V	0.979	202	0%	137	41.6%	6	16.6%	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_DUF2211
DPY19L1	23333	genome.wustl.edu	37	7	35051040	35051040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015283.1	-1	validated	p.R118Q	1.000	101	0%	65	40%	17	52.9%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_DUF2211
AMPH	273	genome.wustl.edu	37	7	38502604	38502604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001635.2	-1	reviewed	p.A287T	0.995	413	0%	302	52%	0	-	probably_damaging(0.985)	tolerated(0.12)	deleterious(0.693)	NULL
POU6F2	11281	genome.wustl.edu	37	7	39472880	39472880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007252.3	+1	reviewed	p.Q411*	1.000	59	0%	61	37.7%	1	0%	-	-	-	NULL
RALA	5898	genome.wustl.edu	37	7	39736420	39736420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005402.2	+1	reviewed	p.V154M	1.000	129	0%	88	28.4%	51	45%	probably_damaging(0.989)	tolerated(0.24)	deleterious(0.477)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
INHBA	3624	genome.wustl.edu	37	7	41739857	41739857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002192.2	-1	reviewed	p.A39V	1.000	75	0%	43	51.2%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
URGCP	55665	genome.wustl.edu	37	7	43917578	43917578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077663.1	-1	validated	p.R495M	0.846	185	0%	131	55%	20	50%	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	NULL
ZMIZ2	83637	genome.wustl.edu	37	7	44805066	44805066	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031449.3	+1	validated	p.H710	1.000	37	0%	18	50%	133	40.6%	-	-	-	NULL
NACAD	23148	genome.wustl.edu	37	7	45121204	45121204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000258775	-1	known	p.R1418Q	0.937	156	0%	111	48.6%	1	100%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_NAC
NACAD	23148	genome.wustl.edu	37	7	45124638	45124638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000258775	-1	known	p.R381W	1.000	44	0%	21	61.9%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNS3	64759	genome.wustl.edu	37	7	47408605	47408605	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022748.10	-1	validated	p.D546	0.001	44	0%	44	34.1%	16	56.2%	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47945516	47945516	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.N482	0.001	157	0%	113	43.4%	0	-	-	-	-	NULL
VOPP1	81552	genome.wustl.edu	37	7	55560040	55560040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030796.3	-1	validated	p.P88L	0.944	83	0%	34	58.8%	29	65.5%	unknown(0)	deleterious(0.01)	-	NULL
SEPT14	346288	genome.wustl.edu	37	7	55910722	55910722	+	Silent	SNP	G	G	A	rs185926188	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207366.2	-1	validated	p.R157	0.000	260	0%	168	39.9%	0	-	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF713	349075	genome.wustl.edu	37	7	56007670	56007670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182633.1	+1	provisional	p.R422C	0.001	37	0%	29	37.9%	2	100%	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
ZNF107	51427	genome.wustl.edu	37	7	64167949	64167949	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013746.1	+1	validated	p.R423*	0.000	66	0%	48	22.9%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC442572	442572	genome.wustl.edu	37	7	66746569	66746569	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_499314.5	+1	model	p.H196	0.620	101	0%	93	36.6%	0	-	-	-	-	NULL
LIMK1	3984	genome.wustl.edu	37	7	73510978	73510978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002314.2	+1	reviewed	p.S60L	0.594	79	0%	51	43.1%	27	40.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LIMK1	3984	genome.wustl.edu	37	7	73520260	73520260	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002314.2	+1	reviewed	p.R222	0.992	94	0%	55	41.8%	23	34.7%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
GTF2IRD2B	389524	genome.wustl.edu	37	7	74524818	74524820	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003795.2	+1	reviewed	p.V23in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DTX2	113878	genome.wustl.edu	37	7	76112259	76112259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102594.1	+1	validated	p.A235T	0.005	185	0%	103	33%	26	53.8%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76797069	76797069	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020879.2	+1	validated	p.V28	0.004	770	0%	631	21.4%	1	0%	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77552019	77552019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127357.1	+1	validated	p.R314H	0.944	114	0%	107	48.6%	10	50%	possibly_damaging(0.888)	deleterious(0.03)	deleterious(0.712)	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81601173	81601173	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443883	-1	known	p.R198Q	0.138	108	0%	65	32.3%	0	-	-	-	-	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81746397	81746397	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.H163	0.995	289	0%	233	51.1%	0	-	-	-	-	HMMPfam_VWA_N
PCLO	27445	genome.wustl.edu	37	7	82467535	82467535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.G4741C	1.000	205	0%	109	39.4%	2	50%	unknown(0)	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
GRM3	2913	genome.wustl.edu	37	7	86394555	86394555	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000840.2	+1	reviewed	p.E32*	1.000	218	0%	152	52.6%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
DMTF1	9988	genome.wustl.edu	37	7	86815218	86815218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142327.1	+1	reviewed	p.R375C	1.000	481	0.4%	318	46.2%	18	38.8%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMSmart_SM00717
ENSG00000240720	0	genome.wustl.edu	37	7	91779878	91779878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.R750C	0.000	298	0%	207	46.4%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
COL1A2	1278	genome.wustl.edu	37	7	94027072	94027072	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000089.3	+1	reviewed	e2+2	0.999	101	0%	78	16.7%	0	-	-	-	-	-
COL1A2	1278	genome.wustl.edu	37	7	94058560	94058560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000089.3	+1	reviewed	p.R1258C	1.000	139	0%	136	47.1%	194	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COLFI,HMMSmart_SM00038
TMEM130	222865	genome.wustl.edu	37	7	98453690	98453690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134450.1	-1	validated	p.R223M	0.041	108	0%	75	58.7%	0	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	superfamily_PKD domain
SMURF1	57154	genome.wustl.edu	37	7	98633252	98633252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020429.1	-1	reviewed	p.V659M	1.000	122	0%	90	53.3%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
SMURF1	57154	genome.wustl.edu	37	7	98648573	98648573	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020429.1	-1	reviewed	p.Y283	0.977	80	0%	52	34.6%	0	-	-	-	-	NULL
PTCD1	26024	genome.wustl.edu	37	7	99032678	99032678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015545.2	-1	validated	p.T63M	0.000	49	0%	42	42.9%	16	56.2%	probably_damaging(0.983)	tolerated(0.53)	neutral(0.436)	NULL
ZNF394	84124	genome.wustl.edu	37	7	99091338	99091338	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032164.2	-1	provisional	p.S500	0.000	430	0%	314	43%	10	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZKSCAN5	23660	genome.wustl.edu	37	7	99128789	99128789	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014569.3	+1	reviewed	p.Y479	0.389	80	0%	70	28.6%	6	66.6%	-	-	-	NULL
ZNF498	221785	genome.wustl.edu	37	7	99227337	99227337	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145115.2	+1	validated	p.R443	0.009	51	0%	27	40.7%	17	41.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CYP3A5	1577	genome.wustl.edu	37	7	99270241	99270241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000777.2	-1	reviewed	p.L94	0.978	241	0%	149	41.6%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
MCM7	4176	genome.wustl.edu	37	7	99691962	99691962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005916.3	-1	reviewed	p.R561H	1.000	46	0%	37	35.1%	230	31.3%	probably_damaging(0.973)	tolerated(0.23)	neutral(0.456)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
GIGYF1	64599	genome.wustl.edu	37	7	100284396	100284396	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022574.4	-1	validated	p.H190	0.671	65	0%	49	34.7%	14	64.2%	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100346071	100346071	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.P409	0.000	109	0%	53	45.3%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
SLC12A9	56996	genome.wustl.edu	37	7	100457557	100457557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020246.2	+1	validated	p.P343H	1.000	140	0%	86	36%	41	58.5%	benign(0.046)	deleterious(0.01)	neutral(0.408)	HMMPfam_AA_permease
SRRT	51593	genome.wustl.edu	37	7	100479744	100479744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015908.5	+1	validated	p.L157I	0.346	238	0%	137	48.2%	73	43.8%	benign(0.224)	tolerated(0.27)	neutral(0.056)	NULL
ACHE	43	genome.wustl.edu	37	7	100491461	100491461	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015831.2	-1	reviewed	p.N131	0.892	92	0%	46	41.3%	1	0%	-	-	-	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_SSF53474
CUX1	1523	genome.wustl.edu	37	7	101821817	101821817	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.I299	0.572	44	0%	26	65.4%	56	55.3%	-	-	-	NULL
SLC26A5	375611	genome.wustl.edu	37	7	103053516	103053516	+	Silent	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198999.2	-1	reviewed	p.G112	0.998	174	0.6%	104	37.5%	0	-	-	-	-	PatternScan_SLC26A
RELN	5649	genome.wustl.edu	37	7	103138295	103138295	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.G2974	0.997	122	0%	91	36.3%	0	-	-	-	-	superfamily_Sialidase
SLC26A4	5172	genome.wustl.edu	37	7	107342475	107342475	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000441.1	+1	reviewed	p.D669	0.959	155	0%	121	10.7%	0	-	-	-	-	HMMPfam_STAS,superfamily_STAS
DOCK4	9732	genome.wustl.edu	37	7	111372325	111372325	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445943	-1	known	p.R1837*	0.654	120	0%	97	35.1%	2	50%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
AASS	10157	genome.wustl.edu	37	7	121756712	121756712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005763.3	-1	reviewed	p.R290H	1.000	85	0%	70	44.3%	1	100%	possibly_damaging(0.841)	tolerated(0.18)	neutral(0.378)	HMMPfam_AlaDh_PNT_C
SLC13A1	6561	genome.wustl.edu	37	7	122768983	122768983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022444.3	-1	validated	p.T350I	1.000	134	0%	108	15.7%	0	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	HMMPfam_Na_sulph_symp
FLNC	2318	genome.wustl.edu	37	7	128484110	128484110	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.G994	0.156	68	0%	45	44.4%	1	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
NRF1	4899	genome.wustl.edu	37	7	129394914	129394914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040110.1	+1	reviewed	p.G469S	1.000	74	0%	61	47.5%	18	44.4%	possibly_damaging(0.738)	tolerated(0.29)	neutral(0.299)	HMMPfam_Nrf1_activ_bdg
C7orf45	136263	genome.wustl.edu	37	7	129855957	129855957	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145268.3	+1	validated	p.R128*	0.656	218	0%	181	27.6%	0	-	-	-	-	NULL
CPA5	93979	genome.wustl.edu	37	7	130007767	130007767	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127441.1	+1	validated	p.A353	0.025	181	0%	118	44.1%	0	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
PLXNA4	91584	genome.wustl.edu	37	7	131895762	131895762	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.S746	0.021	74	0%	47	53.2%	0	-	-	-	-	NULL
CNOT4	4850	genome.wustl.edu	37	7	135078791	135078791	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013316.2	-1	validated	p.A499	1.000	157	0%	88	50%	19	42.1%	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135327969	135327969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015135.2	+1	validated	p.R1808C	1.000	250	0%	160	50%	52	34.6%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
CHRM2	1129	genome.wustl.edu	37	7	136700641	136700641	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000739.2	+1	reviewed	p.T343	0.002	121	0%	94	38.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DGKI	9162	genome.wustl.edu	37	7	137269964	137269964	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004717.2	-1	reviewed	p.G518	0.993	239	0%	215	45.6%	0	-	-	-	-	NULL
HIPK2	28996	genome.wustl.edu	37	7	139281657	139281657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022740.4	-1	validated	p.A492V	1.000	111	0%	70	55.7%	5	0%	-	-	-	NULL
HIPK2	28996	genome.wustl.edu	37	7	139416550	139416550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000263551	-1	known	p.V95A	0.994	385	0%	278	42.8%	3	100%	possibly_damaging(0.76)	tolerated(0.23)	neutral(0.323)	NULL
TBXAS1	6916	genome.wustl.edu	37	7	139636080	139636080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001061.4	+1	reviewed	p.A143T	0.761	171	0%	128	11.7%	0	-	benign(0.025)	tolerated(1)	neutral(0.001)	HMMPfam_p450,superfamily_Cytochrome P450
RAB19	401409	genome.wustl.edu	37	7	140125813	140125813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008749.2	+1	validated	p.V220M	0.497	82	0%	61	31.1%	4	50%	benign(0)	tolerated(0.99)	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
MGAM	8972	genome.wustl.edu	37	7	141754679	141754679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.E1095D	0.781	246	0%	183	46.4%	0	-	benign(0.113)	tolerated(0.61)	neutral(0.013)	NULL
KEL	3792	genome.wustl.edu	37	7	142655048	142655048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000420.2	-1	reviewed	p.R180C	0.002	136	0%	108	42.6%	0	-	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
KEL	3792	genome.wustl.edu	37	7	142655451	142655451	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460479	-1	known	p.H166Y	1.000	161	0.6%	116	44%	0	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZYX	7791	genome.wustl.edu	37	7	143085432	143085432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010972.1	+1	reviewed	p.E382K	0.938	36	0%	33	42.4%	112	27.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
CNTNAP2	26047	genome.wustl.edu	37	7	147259300	147259300	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.P616	0.986	246	0%	195	15.9%	0	-	-	-	-	superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases
ZNF786	136051	genome.wustl.edu	37	7	148767621	148767621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152411.3	-1	validated	p.A748V	0.010	283	0.7%	213	24.4%	20	30%	possibly_damaging(0.836)	tolerated(0.36)	neutral(0.340)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF786	136051	genome.wustl.edu	37	7	148769134	148769134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152411.3	-1	validated	p.V244M	0.002	28	0%	12	41.7%	13	61.5%	possibly_damaging(0.653)	deleterious(0.02)	deleterious(0.613)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF425	155054	genome.wustl.edu	37	7	148801430	148801430	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001661.2	-1	validated	p.S511	0.000	16	0%	12	50%	10	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF777	27153	genome.wustl.edu	37	7	149153005	149153005	+	Missense_Mutation	SNP	C	C	T	rs181242161	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015694.2	-1	validated	p.V37I	0.004	246	0%	179	43%	17	35.2%	benign(0)	tolerated(0.99)	-	NULL
SSPO	23145	genome.wustl.edu	37	7	149491936	149491936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.S2046N	0.003	88	0%	47	40.4%	0	-	-	-	-	NULL
SSPO	23145	genome.wustl.edu	37	7	149509485	149509485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.R3295W	0.374	15	0%	12	58.3%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ABCB8	11194	genome.wustl.edu	37	7	150732674	150732674	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007188.3	+1	reviewed	p.R258*	1.000	25	0%	27	55.6%	29	10.3%	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
CHPF2	54480	genome.wustl.edu	37	7	150932235	150932235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019015.1	+1	provisional	p.R122H	1.000	62	0%	46	41.3%	50	38%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
GALNT11	63917	genome.wustl.edu	37	7	151818003	151818003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022087.2	+1	validated	p.R549W	0.844	98	0%	73	45.2%	44	36.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MLL3	58508	genome.wustl.edu	37	7	151921189	151921189	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.C1078	0.995	194	0%	122	45.1%	6	33.3%	-	-	-	NULL
HTR5A	3361	genome.wustl.edu	37	7	154863212	154863212	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024012.2	+1	reviewed	p.A201	1.000	123	0%	82	47.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RBM33	155435	genome.wustl.edu	37	7	155457912	155457912	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053043.2	+1	validated	p.S29	0.991	241	0%	157	37.6%	6	33.3%	-	-	-	NULL
UBE3C	9690	genome.wustl.edu	37	7	156963054	156963054	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014671.2	+1	validated	p.G84	0.885	296	0.3%	198	47%	23	43.4%	-	-	-	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1905109	1905109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.A1239T	0.000	73	0%	64	60.9%	4	50%	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
CSMD1	64478	genome.wustl.edu	37	8	2815273	2815273	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.T3254	0.086	183	0%	124	49.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	4277528	4277528	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.W121*	1.000	178	0%	108	50%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	4495011	4495011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.Y52C	0.998	160	0%	113	48.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ANGPT2	285	genome.wustl.edu	37	8	6366542	6366542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001147.2	-1	reviewed	p.S414N	1.000	514	0%	424	48.1%	16	0%	possibly_damaging(0.583)	tolerated(0.16)	neutral(0.260)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
PPP1R3B	79660	genome.wustl.edu	37	8	8998590	8998590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024607.2	-1	validated	p.T191M	1.000	301	0%	263	44.1%	5	40%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CBM_21
MSR1	4481	genome.wustl.edu	37	8	15978081	15978081	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138715.2	-1	reviewed	p.S356	0.000	43	0%	30	40%	0	-	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
ASAH1	427	genome.wustl.edu	37	8	17930774	17930774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127505.1	-1	reviewed	p.A62V	0.002	135	0%	110	40.9%	0	-	unknown(0)	tolerated(0.24)	-	NULL
HR	55806	genome.wustl.edu	37	8	21976493	21976493	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005144.4	-1	reviewed	p.D1061	0.998	25	0.000	9	0.556	37	24.3%	-	-	-	HMMSmart_SM00558
NEFM	4741	genome.wustl.edu	37	8	24771945	24771945	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005382.2	+1	reviewed	p.A213	0.907	33	0%	27	51.9%	0	-	-	-	-	HMMPfam_Filament
NEFM	4741	genome.wustl.edu	37	8	24775778	24775778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005382.2	+1	reviewed	p.G804W	1.000	277	0%	154	40.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DPYSL2	1808	genome.wustl.edu	37	8	26509877	26509877	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001386.4	+1	validated	p.T462	0.294	158	0%	125	46.4%	6	0%	-	-	-	NULL
ADRA1A	148	genome.wustl.edu	37	8	26721921	26721921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033303.3	-1	reviewed	p.A189V	0.997	46	0%	25	44%	0	-	benign(0.017)	tolerated(0.07)	neutral(0.320)	HMMPfam_7tm_1,superfamily_SSF81321
CHRNA2	1135	genome.wustl.edu	37	8	27321501	27321501	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000742.3	-1	reviewed	p.G153	0.997	153	0%	83	50.6%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
WHSC1L1	54904	genome.wustl.edu	37	8	38146045	38146045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023034.1	-1	reviewed	p.R1154Q	0.995	197	0%	157	49%	8	62.5%	benign(0.242)	tolerated(0.31)	neutral(0.052)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
TACC1	6867	genome.wustl.edu	37	8	38693782	38693782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006283.2	+1	reviewed	p.V606M	0.998	171	0.6%	122	47.5%	1	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_TACC
GOLGA7	51125	genome.wustl.edu	37	8	41355115	41355115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002296.1	+1	validated	p.E67K	1.000	234	0%	194	44.8%	46	65.2%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Erf4
AGPAT6	137964	genome.wustl.edu	37	8	41476220	41476220	+	Silent	SNP	C	C	T	rs192754152	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178819.3	+1	validated	p.G357	0.745	234	0%	156	12.8%	75	8%	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41575150	41575150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142446.1	-1	reviewed	p.R459Q	1.000	40	0%	40	52.5%	0	-	possibly_damaging(0.93)	tolerated(0.19)	neutral(0.426)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KAT6A	7994	genome.wustl.edu	37	8	41791087	41791087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	p.S1551G	1.000	187	0%	120	51.7%	25	36%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
IKBKB	3551	genome.wustl.edu	37	8	42166539	42166539	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001556.1	+1	validated	p.Q230*	1.000	58	0%	32	40.6%	5	0%	-	-	-	superfamily_Kinase_like
IKBKB	3551	genome.wustl.edu	37	8	42176889	42176889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001556.1	+1	validated	p.S489N	1.000	175	0%	126	37.3%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKDC	5591	genome.wustl.edu	37	8	48711895	48711895	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081640.1	-1	validated	p.R3391Q	0.000	80	0%	64	37.5%	92	46.7%	-	-	-	NULL
RP1	6101	genome.wustl.edu	37	8	55534071	55534071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.A182V	1.000	81	0%	41	43.9%	0	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837
TGS1	96764	genome.wustl.edu	37	8	56717540	56717540	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024831.6	+1	validated	p.D696	0.998	274	0%	206	51%	29	65.5%	-	-	-	HMMPfam_Methyltransf_15,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MOS	4342	genome.wustl.edu	37	8	57026041	57026041	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005372.1	-1	validated	p.C167	0.001	39	0%	47	46.8%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
SULF1	23213	genome.wustl.edu	37	8	70517160	70517160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.P457L	1.000	138	0%	95	47.4%	8	0%	benign(0.009)	tolerated(1)	neutral(0.001)	superfamily_Alkaline_phosphatase_core
PAG1	55824	genome.wustl.edu	37	8	81897531	81897531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018440.3	-1	reviewed	p.Q119R	1.000	97	0%	52	42.3%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
E2F5	1875	genome.wustl.edu	37	8	86118439	86118439	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001951.3	+1	reviewed	p.I178	1.000	351	0.3%	270	41.1%	35	54.2%	unknown(0)	-	-	NULL
RUNX1T1	862	genome.wustl.edu	37	8	93003989	93003989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175634.1	-1	reviewed	p.P290H	1.000	617	0%	414	51.4%	0	-	possibly_damaging(0.822)	tolerated(0.38)	neutral(0.329)	NULL
CDH17	1015	genome.wustl.edu	37	8	95182742	95182742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144663.1	-1	reviewed	p.G317R	0.010	155	0%	115	47.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PTDSS1	9791	genome.wustl.edu	37	8	97345750	97345750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014754.1	+1	provisional	p.R460W	1.000	170	0.6%	123	39%	72	52.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MATN2	4147	genome.wustl.edu	37	8	99039801	99039801	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002380.3	+1	reviewed	p.S700	1.000	127	0.8%	100	14%	8	37.5%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
UBR5	51366	genome.wustl.edu	37	8	103326031	103326031	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	e16+1	1.000	209	0%	146	47.9%	1	100%	-	-	-	-
UBR5	51366	genome.wustl.edu	37	8	103373430	103373430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.P38T	1.000	157	0%	93	45.2%	12	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104924285	104924285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.P566H	1.000	146	0%	132	46.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_PDZ domain-like
RAD21	5885	genome.wustl.edu	37	8	117859852	117859852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.A595T	1.000	233	0%	177	49.7%	130	37.6%	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	HMMPfam_Rad21_Rec8
COL14A1	7373	genome.wustl.edu	37	8	121220601	121220601	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	e10+1	1.000	163	0%	124	41.9%	0	-	-	-	-	-
WDYHV1	55093	genome.wustl.edu	37	8	124440226	124440226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018024.1	+1	provisional	p.E49V	1.000	215	0%	124	47.6%	12	50%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_WDYHV
ADCY8	114	genome.wustl.edu	37	8	131880138	131880138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.V722I	1.000	189	0%	142	48.6%	0	-	benign(0.063)	tolerated(0.62)	neutral(0.008)	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133152342	133152342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004519.2	-1	reviewed	p.A517T	0.987	88	0%	46	37%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_KCNQ_channel
TG	7038	genome.wustl.edu	37	8	133980200	133980200	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.L1950	0.570	113	0%	91	39.6%	0	-	-	-	-	NULL
NDRG1	10397	genome.wustl.edu	37	8	134274294	134274294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135242.1	-1	reviewed	p.A108T	0.002	80	0%	51	31.4%	77	36.3%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
SLC45A4	57210	genome.wustl.edu	37	8	142228405	142228405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080431.1	-1	provisional	p.A394V	1.000	20	0%	14	50%	11	72.7%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
GML	2765	genome.wustl.edu	37	8	143921919	143921919	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002066.2	+1	validated	p.R22	0.000	164	0%	111	44.1%	0	-	-	-	-	NULL
ZNF696	79943	genome.wustl.edu	37	8	144378625	144378625	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030895.2	+1	validated	p.H260	0.046	39	0%	16	75%	5	80%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667
TOP1MT	116447	genome.wustl.edu	37	8	144397939	144397939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052963.1	-1	reviewed	p.A504V	0.975	100	0%	62	37.1%	45	46.6%	possibly_damaging(0.835)	tolerated(0.21)	neutral(0.362)	superfamily_Topismrse_insert,superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,HMMPfam_Topoisom_I
ZC3H3	23144	genome.wustl.edu	37	8	144523150	144523150	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015117.2	-1	validated	p.S816	0.001	13	0%	10	60%	19	68.4%	-	-	-	NULL
PLEC	5339	genome.wustl.edu	37	8	144991319	144991319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.A4361T	0.986	51	0%	31	48.4%	400	45.2%	probably_damaging(0.974)	-	-	superfamily_Plakin repeat
PARP10	84875	genome.wustl.edu	37	8	145057153	145057153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032789.3	-1	validated	p.R835W	0.005	31	0%	23	39.1%	53	58.4%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_PARP,superfamily_SSF56399
KIFC2	90990	genome.wustl.edu	37	8	145697603	145697603	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301331	+1	known	e8+2	0.999	55	1.8%	28	14.3%	14	7.1%	-	-	-	-
KANK1	23189	genome.wustl.edu	37	9	712209	712209	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.H481	0.880	137	0%	91	45.1%	0	-	-	-	-	superfamily_ANK
KANK1	23189	genome.wustl.edu	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.E1035	1.000	145	0%	109	48.6%	1	100%	-	-	-	superfamily_ANK
JAK2	3717	genome.wustl.edu	37	9	5072537	5072537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.V563I	0.002	138	0%	115	39.1%	4	25%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,superfamily_SSF55550
ADAMTSL1	92949	genome.wustl.edu	37	9	18675894	18675894	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000276935	+1	known	p.I163T	1.000	359	0%	265	28.3%	0	-	-	-	-	superfamily_TSP-1 type 1 repeat
RRAGA	10670	genome.wustl.edu	37	9	19049840	19049840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006570.4	+1	validated	p.W61C	1.000	50	0%	37	59.5%	58	5.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MTAP	4507	genome.wustl.edu	37	9	21854712	21854712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002451.3	+1	reviewed	p.S178N	1.000	79	0%	49	57.1%	52	48%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
ACO1	48	genome.wustl.edu	37	9	32418179	32418179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.R153Q	1.000	175	0%	131	49.6%	15	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
CHMP5	51510	genome.wustl.edu	37	9	33276512	33276512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016410.4	+1	validated	p.L149P	1.000	290	0%	214	10.7%	136	10.2%	benign(0.016)	deleterious(0.03)	neutral(0.365)	HMMPfam_Snf7
NFX1	4799	genome.wustl.edu	37	9	33303215	33303215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002504.3	+1	reviewed	p.A407T	1.000	400	0%	277	44.4%	32	46.8%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,superfamily_RING/U-box
FAM219A	203259	genome.wustl.edu	37	9	34402331	34402331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434789	-1	known	p.T133I	0.408	126	0%	76	56.6%	0	-	unknown(0)	-	-	NULL
RUSC2	9853	genome.wustl.edu	37	9	35555066	35555066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135999.1	+1	validated	p.T675I	0.979	63	0%	52	46.2%	0	-	benign(0.022)	deleterious(0.02)	neutral(0.384)	NULL
TLN1	7094	genome.wustl.edu	37	9	35714252	35714252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006289.3	-1	reviewed	p.R1035Q	1.000	67	0%	55	16.4%	53	16.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SSF109885
GNE	10020	genome.wustl.edu	37	9	36219880	36219880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128227.1	-1	reviewed	p.A622T	1.000	213	0%	153	43.1%	0	-	benign(0.358)	deleterious(0)	deleterious(0.558)	HMMPfam_ROK,superfamily_SSF53067
RNF38	152006	genome.wustl.edu	37	9	36376031	36376031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022781.4	-1	reviewed	p.P86S	1.000	489	0%	383	42.8%	14	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PAX5	5079	genome.wustl.edu	37	9	36966527	36966527	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377849	-1	known	e7-2	0.003	116	0%	80	42.5%	0	-	-	-	-	-
GRHPR	9380	genome.wustl.edu	37	9	37424938	37424938	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012203.1	+1	reviewed	p.S60	0.048	53	0%	23	34.8%	148	45.2%	-	-	-	HMMPfam_2-Hacid_dh,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
FRMPD1	22844	genome.wustl.edu	37	9	37729769	37729769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.I219	0.598	90	0%	68	39.7%	3	33.3%	-	-	-	HMMSmart_B41
SHB	6461	genome.wustl.edu	37	9	37919912	37919912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003028.2	-1	validated	p.P479L	1.000	296	0%	183	48.1%	16	62.5%	possibly_damaging(0.559)	tolerated(0.07)	deleterious(0.510)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ANKRD18A	253650	genome.wustl.edu	37	9	38577872	38577872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399703	-1	known	p.H841Y	0.513	26	0%	14	57.1%	0	-	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	NULL
APBA1	320	genome.wustl.edu	37	9	72131801	72131801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001163.3	-1	reviewed	p.A109V	0.020	14	0%	13	53.8%	0	-	benign(0)	tolerated(1)	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73164504	73164504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.R1209W	0.957	269	0%	192	45.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73233887	73233887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.V740M	1.000	72	0%	56	55.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74332877	74332877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.V796I	0.960	230	0%	179	49.2%	18	61.1%	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_Pectin lyase-like
ANXA1	301	genome.wustl.edu	37	9	75775279	75775279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000700.1	+1	reviewed	p.R124H	0.041	127	0%	113	26.5%	1139	23%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_Annexin,HMMPfam_Annexin
RORB	6096	genome.wustl.edu	37	9	77257359	77257359	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006914.3	+1	reviewed	p.Q89*	1.000	99	0%	58	53.4%	0	-	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PCSK5	5125	genome.wustl.edu	37	9	78803534	78803534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006200.3	+1	reviewed	p.R775W	0.045	104	0%	88	13.6%	2	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
FOXB2	442425	genome.wustl.edu	37	9	79634636	79634636	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013735.1	+1	provisional	p.T22	0.997	45	0%	38	34.2%	0	-	-	-	-	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,superfamily_SSF46785
VPS13A	23230	genome.wustl.edu	37	9	79829247	79829247	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.D233	0.000	163	0%	141	35.5%	3	33.3%	-	-	-	NULL
PSAT1	29968	genome.wustl.edu	37	9	80916876	80916876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058179.2	+1	reviewed	p.S43N	1.000	459	0%	386	45.3%	47	63.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
AGTPBP1	23287	genome.wustl.edu	37	9	88270211	88270211	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376081	-1	known	p.W229*	1.000	80	0%	82	23.2%	5	40%	-	-	-	superfamily_ARM-type_fold
NAA35	60560	genome.wustl.edu	37	9	88576932	88576932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024635.3	+1	validated	p.T118M	1.000	165	0%	124	37.9%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mak10
SYK	6850	genome.wustl.edu	37	9	93636536	93636536	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003177.5	+1	reviewed	p.P322	0.397	193	0%	151	48.3%	34	44.1%	-	-	-	NULL
SYK	6850	genome.wustl.edu	37	9	93657854	93657854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003177.5	+1	reviewed	p.R627H	1.000	96	0%	51	45.1%	46	65.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00220
NFIL3	4783	genome.wustl.edu	37	9	94172745	94172745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005384.2	-1	validated	p.R91H	0.875	278	0%	233	44.6%	19	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2
ROR2	4920	genome.wustl.edu	37	9	94493204	94493204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004560.2	-1	reviewed	p.V391I	0.976	56	0%	44	52.3%	5	60%	benign(0)	tolerated(1)	-	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
C9orf129	445577	genome.wustl.edu	37	9	96097784	96097784	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098808.1	-1	provisional	p.L79	1.000	246	0%	170	44.1%	2	0%	-	-	-	NULL
FAM120A	23196	genome.wustl.edu	37	9	96320198	96320198	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014612.3	+1	validated	p.P858	0.405	65	0%	45	20%	160	11.8%	-	-	-	NULL
HSD17B3	3293	genome.wustl.edu	37	9	99003166	99003166	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000197.1	-1	reviewed	p.S232	0.000	256	0%	200	47.5%	3	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
C9orf174	100499483	genome.wustl.edu	37	9	100124122	100124122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.R1215C	1.000	102	0%	65	52.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSTD2	158427	genome.wustl.edu	37	9	100367864	100367864	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139246.4	-1	validated	p.Y338	0.991	150	0%	102	32.4%	10	30%	-	-	-	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
ANKS6	203286	genome.wustl.edu	37	9	101546320	101546320	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173551.3	-1	provisional	p.Q343*	1.000	69	0%	54	51.9%	17	41.1%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GRIN3A	116443	genome.wustl.edu	37	9	104432714	104432714	+	Silent	SNP	T	T	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.R660	1.000	63	0%	61	45.9%	0	-	-	-	-	HMMSmart_PBPe,superfamily_SSF53850
OR13C3	138803	genome.wustl.edu	37	9	107298632	107298632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001961.1	-1	provisional	p.A155T	1.000	216	0%	154	48.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SLC44A1	23446	genome.wustl.edu	37	9	108110729	108110729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080546.3	+1	validated	p.A166V	1.000	270	0%	215	45.6%	46	58.6%	benign(0.011)	tolerated(0.13)	neutral(0.253)	NULL
KLF4	9314	genome.wustl.edu	37	9	110251328	110251328	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004235.4	-1	validated	p.Q3	1.000	36	0%	21	42.9%	18	66.6%	-	-	-	NULL
ACTL7B	10880	genome.wustl.edu	37	9	111617774	111617774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006686.3	-1	reviewed	p.A146V	0.998	28	0%	11	36.4%	0	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
IKBKAP	8518	genome.wustl.edu	37	9	111641821	111641821	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003640.3	-1	reviewed	p.H1159	0.001	131	1.5%	114	41.2%	31	38.7%	-	-	-	NULL
PTPN3	5774	genome.wustl.edu	37	9	112143964	112143964	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002829.3	-1	reviewed	p.R878*	1.000	264	0%	183	39.3%	18	44.4%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112918708	112918708	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.L1035	1.000	143	0%	114	50.9%	3	0%	-	-	-	NULL
LPAR1	1902	genome.wustl.edu	37	9	113703894	113703894	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001401.3	-1	reviewed	p.P200	0.994	225	0%	174	14.4%	16	12.5%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIF12	113220	genome.wustl.edu	37	9	116858707	116858707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138424.1	-1	provisional	p.R95Q	1.000	292	0%	212	49.1%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
COL27A1	85301	genome.wustl.edu	37	9	117044776	117044776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032888.2	+1	validated	p.V1271I	0.986	105	0%	88	31.8%	4	50%	unknown(0)	tolerated(0.54)	-	HMMPfam_Collagen
COL27A1	85301	genome.wustl.edu	37	9	117071681	117071681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032888.2	+1	validated	p.R1787C	1.000	67	0%	54	40.7%	11	9%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_COLFI,HMMSmart_SM00038
TRIM32	22954	genome.wustl.edu	37	9	119460193	119460193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.G58C	1.000	141	0%	94	52.1%	13	38.4%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
FBXW2	26190	genome.wustl.edu	37	9	123526843	123526843	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012164.3	-1	reviewed	p.H453	0.996	125	0%	92	39.1%	41	41.4%	-	-	-	NULL
CNTRL	11064	genome.wustl.edu	37	9	123919844	123919844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.A1488T	0.968	196	0%	173	52%	10	40%	benign(0.1)	tolerated(0.75)	neutral(0.009)	NULL
CRB2	286204	genome.wustl.edu	37	9	126133465	126133465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173689.5	+1	validated	p.A682T	0.000	72	0%	47	46.8%	0	-	possibly_damaging(0.876)	tolerated(0.21)	neutral(0.385)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
DENND1A	57706	genome.wustl.edu	37	9	126144711	126144711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020946.1	-1	validated	p.R677Q	0.000	45	0%	32	18.8%	11	9%	benign(0.014)	tolerated(0.97)	neutral(0.001)	NULL
PBX3	5090	genome.wustl.edu	37	9	128725337	128725337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006195.5	+1	validated	p.D390G	1.000	286	0%	202	23.8%	0	-	-	-	-	NULL
ZBTB34	403341	genome.wustl.edu	37	9	129642962	129642962	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099270.1	+1	validated	p.D424	0.998	173	0%	108	14.8%	5	20%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LRSAM1	90678	genome.wustl.edu	37	9	130223491	130223491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005373.1	+1	validated	p.R121C	0.327	115	0%	77	41.6%	28	50%	possibly_damaging(0.896)	deleterious(0.05)	deleterious(0.699)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
NAIF1	203245	genome.wustl.edu	37	9	130826012	130826012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197956.3	-1	validated	p.A227T	1.000	180	0%	108	41.7%	21	52.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTGES2	80142	genome.wustl.edu	37	9	130886024	130886024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025072.5	-1	reviewed	p.E215K	0.998	164	0%	96	46.9%	179	54.1%	benign(0.278)	tolerated(0.31)	neutral(0.057)	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131344985	131344985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.R555C	1.000	194	0%	125	48.8%	43	51.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131395575	131395575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.D2466N	1.000	74	1.4%	55	20%	372	24.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_efhand_Ca_insen,superfamily_SSF47473
PKN3	29941	genome.wustl.edu	37	9	131476567	131476567	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013355.3	+1	validated	p.P468	0.868	74	0%	52	40.4%	6	33.3%	-	-	-	NULL
PKN3	29941	genome.wustl.edu	37	9	131479176	131479176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013355.3	+1	validated	p.E653D	0.998	212	0%	163	48.5%	5	60%	benign(0.01)	tolerated(0.74)	neutral(0.002)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZER1	10444	genome.wustl.edu	37	9	131497624	131497624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006336.2	-1	provisional	p.V710A	1.000	223	0%	139	43.9%	46	41.3%	possibly_damaging(0.94)	deleterious(0.04)	deleterious(0.734)	superfamily_ARM-type_fold
ZER1	10444	genome.wustl.edu	37	9	131517694	131517694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006336.2	-1	provisional	p.V51I	1.000	99	0%	60	45%	42	33.3%	possibly_damaging(0.583)	tolerated(0.14)	neutral(0.450)	NULL
FUBP3	8939	genome.wustl.edu	37	9	133506104	133506104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003934.1	+1	validated	p.R403W	1.000	65	0%	48	52.1%	82	41.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
LAMC3	10319	genome.wustl.edu	37	9	133945221	133945221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006059.3	+1	reviewed	p.A1018V	0.004	18	0%	13	38.5%	8	0%	benign(0.134)	tolerated(0.24)	neutral(0.049)	NULL
LAMC3	10319	genome.wustl.edu	37	9	133952640	133952640	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006059.3	+1	reviewed	p.A1232	0.001	49	0%	33	60.6%	18	22.2%	-	-	-	NULL
FAM78A	286336	genome.wustl.edu	37	9	134151420	134151420	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033387.3	-1	validated	p.P49	1.000	94	0%	62	32.3%	1	0%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135202738	135202738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.C1416Y	0.000	474	0%	351	49.9%	15	53.3%	benign(0.267)	deleterious(0)	deleterious(0.473)	NULL
TTF1	7270	genome.wustl.edu	37	9	135276897	135276897	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.R438*	0.001	271	0%	258	46.9%	8	0%	-	-	-	NULL
OBP2B	29989	genome.wustl.edu	37	9	136083954	136083954	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014581.2	-1	validated	p.V36	0.000	193	0%	125	39.2%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
REXO4	57109	genome.wustl.edu	37	9	136279834	136279834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020385.2	-1	validated	p.E175K	0.002	382	0%	290	42.8%	44	43.1%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136323210	136323210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139025.3	+1	reviewed	p.Y1357	0.451	80	0%	46	45.7%	8	62.5%	-	-	-	superfamily_Spermadhesin CUB domain
SARDH	1757	genome.wustl.edu	37	9	136568115	136568115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134707.1	-1	reviewed	p.R531C	0.000	32	0%	25	44%	1	0%	possibly_damaging(0.643)	deleterious(0.05)	deleterious(0.571)	superfamily_SSF103025
VAV2	7410	genome.wustl.edu	37	9	136643935	136643935	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.T613	0.840	68	0%	41	41.5%	31	45.1%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
RXRA	6256	genome.wustl.edu	37	9	137321072	137321072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002957.4	+1	reviewed	p.G343	0.998	32	0%	15	46.7%	27	0%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
PPP1R26	9858	genome.wustl.edu	37	9	138376468	138376468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014811.3	+1	validated	p.V38M	0.000	38	0%	19	47.4%	24	54.1%	possibly_damaging(0.525)	tolerated(0.08)	deleterious(0.477)	NULL
ABCA2	20	genome.wustl.edu	37	9	139911708	139911708	+	Silent	SNP	G	G	A	rs143432283	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479446	-1	known	p.T181M	0.806	38	0%	30	40%	46	36.9%	-	-	-	NULL
FAM166A	401565	genome.wustl.edu	37	9	140139876	140139876	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001710.1	-1	predicted	p.P135	0.017	229	0%	149	43.6%	0	-	-	-	-	NULL
COBRA1	25920	genome.wustl.edu	37	9	140166607	140166607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015456.3	+1	validated	p.D474N	0.993	128	0%	112	48.2%	126	54.7%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	HMMPfam_COBRA1
PNPLA7	375775	genome.wustl.edu	37	9	140357285	140357285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.A1115V	1.000	101	0%	83	47%	4	50%	probably_damaging(1)	tolerated(0.62)	deleterious(0.504)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
CACNA1B	774	genome.wustl.edu	37	9	140991061	140991061	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413253	+1	known	p.V105M	0.988	281	0%	189	46.6%	0	-	-	-	-	NULL
ADARB2	105	genome.wustl.edu	37	10	1406015	1406015	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018702.2	-1	reviewed	p.G95	0.028	11	0.000	7	0.571	0	-	-	-	-	NULL
ITIH2	3698	genome.wustl.edu	37	10	7774308	7774308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.T552M	0.831	147	0%	98	46.9%	0	-	benign(0.038)	tolerated(0.14)	neutral(0.252)	NULL
DHTKD1	55526	genome.wustl.edu	37	10	12131229	12131229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018706.5	+1	validated	p.P321L	1.000	77	0%	55	43.6%	16	37.5%	benign(0.01)	tolerated(0.77)	neutral(0.002)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
SEPHS1	22929	genome.wustl.edu	37	10	13371764	13371764	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012247.3	-1	reviewed	p.D195	0.965	164	0%	110	46.4%	109	47.7%	-	-	-	HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like
FAM171A1	221061	genome.wustl.edu	37	10	15255016	15255016	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.H857	0.000	216	0%	164	43.3%	34	58.8%	-	-	-	HMMPfam_UPF0560
C10orf140	387640	genome.wustl.edu	37	10	21805750	21805750	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207371.3	-1	validated	p.P334	1.000	10	0%	11	54.5%	0	-	-	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24508641	24508641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.R53C	0.370	108	0%	64	46.9%	7	42.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26286168	26286168	+	Silent	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.G163	1.000	140	0%	91	53.8%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ARHGAP12	94134	genome.wustl.edu	37	10	32197565	32197565	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018287.5	-1	provisional	p.T73	0.007	292	0%	213	25.8%	10	50%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain
ZNF25	219749	genome.wustl.edu	37	10	38241416	38241416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145011.2	-1	provisional	p.T337I	1.000	191	0%	136	24.3%	2	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_C2H2 and C2HC zinc fingers
ZNF22	7570	genome.wustl.edu	37	10	45499134	45499134	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006963.4	+1	validated	p.T106	0.011	141	0%	126	49.2%	21	38%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
RBP3	5949	genome.wustl.edu	37	10	48390467	48390467	+	Silent	SNP	G	G	A	rs184452710	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002900.2	-1	reviewed	p.S137	0.693	69	0%	45	51.1%	0	-	-	-	-	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
ARHGAP22	58504	genome.wustl.edu	37	10	49687663	49687663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417912	-1	known	p.S156L	0.999	33	0%	17	41.2%	0	-	possibly_damaging(0.767)	-	-	NULL
PARG	8505	genome.wustl.edu	37	10	51087830	51087830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003631.2	-1	reviewed	p.S626L	1.000	408	0%	324	9.3%	12	0%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_PARG_cat
ZWINT	11130	genome.wustl.edu	37	10	58119846	58119846	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007057.3	-1	reviewed	p.L63	0.980	46	0%	34	35.3%	57	50.8%	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61828706	61828706	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.T3978S	0.999	264	0%	182	47.8%	0	-	benign(0)	-	-	NULL
MYPN	84665	genome.wustl.edu	37	10	69955232	69955232	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.L1034*	1.000	135	0%	102	21.6%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SLC29A3	55315	genome.wustl.edu	37	10	73121833	73121833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373189	+1	known	p.R299H	0.021	151	0%	108	44.4%	3	33.3%	possibly_damaging(0.93)	tolerated(0.54)	neutral(0.384)	HMMPfam_Nucleoside_tran
SLC29A3	55315	genome.wustl.edu	37	10	73122211	73122211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373189	+1	known	p.S425N	1.000	63	0%	42	33.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nucleoside_tran
CDH23	64072	genome.wustl.edu	37	10	73337743	73337743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.V276I	0.996	128	0%	95	47.4%	0	-	benign(0.156)	tolerated(0.38)	neutral(0.032)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73569705	73569705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.L2951M	1.000	67	0%	38	13.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73571145	73571145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.Q3051*	1.000	83	0%	62	41.9%	0	-	-	-	-	NULL
PLA2G12B	84647	genome.wustl.edu	37	10	74714386	74714386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032562.2	-1	validated	p.Q20*	0.257	61	0%	42	59.5%	0	-	-	-	-	HMMPfam_PLA2G12
MSS51	118490	genome.wustl.edu	37	10	75184361	75184361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024593.1	-1	validated	p.C445R	0.053	374	0%	283	42.4%	1	100%	possibly_damaging(0.55)	tolerated(0.14)	neutral(0.436)	NULL
SEC24C	9632	genome.wustl.edu	37	10	75529404	75529404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004922.2	+1	reviewed	p.K865N	1.000	168	0%	100	44%	128	46.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
DUSP13	51207	genome.wustl.edu	37	10	76865549	76865549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007271.1	-1	reviewed	p.R149W	0.014	30	0%	19	47.4%	0	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
ZNF503	84858	genome.wustl.edu	37	10	77159047	77159047	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032772.4	-1	validated	p.P467	0.033	24	0%	11	45.5%	102	50%	-	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78651292	78651292	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372403	-1	known	p.R1004Q	0.006	58	0%	46	41.3%	0	-	-	-	-	NULL
GRID1	2894	genome.wustl.edu	37	10	87966252	87966252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017551.2	-1	reviewed	p.L130P	1.000	102	0%	95	33.7%	0	-	benign(0.01)	tolerated(0.15)	neutral(0.241)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
MARCH5	54708	genome.wustl.edu	37	10	94071050	94071050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017824.4	+1	validated	p.C65Y	1.000	169	0%	105	51.4%	69	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00744,HMMPfam_zf-C3HC4
PDE6C	5146	genome.wustl.edu	37	10	95381757	95381757	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006204.3	+1	reviewed	p.A264	0.000	306	0%	250	49.2%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
FRA10AC1	118924	genome.wustl.edu	37	10	95447190	95447190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145246.4	-1	reviewed	p.R161Q	1.000	57	0%	56	30.4%	17	23.5%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Fra10Ac1
TBC1D12	23232	genome.wustl.edu	37	10	96269905	96269905	+	Missense_Mutation	SNP	G	G	A	rs189620911	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015188.1	+1	validated	p.R553H	1.000	301	0%	225	41.8%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
ALDH18A1	5832	genome.wustl.edu	37	10	97369966	97369966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002860.3	-1	reviewed	p.R732C	1.000	128	0%	91	42.9%	166	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ALDH-like
TCTN3	26123	genome.wustl.edu	37	10	97440280	97440280	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015631.5	-1	validated	p.P513	0.982	198	0%	148	49.3%	74	45.9%	-	-	-	NULL
SLIT1	6585	genome.wustl.edu	37	10	98802763	98802763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003061.2	-1	validated	p.R687W	0.997	82	0%	46	43.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00082,superfamily_L domain-like
ANKRD2	26287	genome.wustl.edu	37	10	99338110	99338110	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020349.2	+1	validated	p.D128	0.926	25	0%	30	36.7%	0	-	-	-	-	superfamily_Ankyrin repeat
C10orf62	414157	genome.wustl.edu	37	10	99349900	99349900	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009997.2	+1	validated	p.H82	0.000	58	0%	47	46.8%	0	-	-	-	-	NULL
DNMBP	23268	genome.wustl.edu	37	10	101657918	101657918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015221.2	-1	validated	p.P949T	0.999	357	0%	224	40.2%	2	50%	probably_damaging(0.976)	tolerated(0.42)	neutral(0.432)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CWF19L1	55280	genome.wustl.edu	37	10	102019994	102019994	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018294.4	-1	validated	p.A90	0.990	268	0%	190	41.6%	21	61.9%	-	-	-	NULL
FAM178A	55719	genome.wustl.edu	37	10	102716272	102716272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136123.1	+1	validated	p.A1132V	1.000	341	0%	238	10.9%	19	15.7%	possibly_damaging(0.636)	deleterious(0.03)	deleterious(0.587)	NULL
MGEA5	10724	genome.wustl.edu	37	10	103559087	103559087	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012215.3	-1	validated	p.G441*	1.000	346	0%	296	45.9%	44	18.1%	-	-	-	NULL
NFKB2	4791	genome.wustl.edu	37	10	104160960	104160960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077494.1	+1	validated	p.E699K	1.000	174	0%	150	50.7%	39	48.7%	probably_damaging(0.98)	tolerated(0.24)	neutral(0.461)	HMMPfam_Ank,superfamily_Ankyrin repeat
PSD	5662	genome.wustl.edu	37	10	104164743	104164743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002779.3	-1	provisional	p.L823M	0.962	78	0%	46	21.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PDCD11	22984	genome.wustl.edu	37	10	105194617	105194617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014976.1	+1	validated	p.E1244K	0.001	67	0%	49	38.8%	37	51.3%	benign(0)	tolerated(0.92)	-	superfamily_Nucleic_acid_OB,HMMSmart_S1
COL17A1	1308	genome.wustl.edu	37	10	105812833	105812833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000494.3	-1	reviewed	p.R632H	0.935	126	0%	83	37.3%	0	-	unknown(0)	deleterious(0.04)	-	NULL
COL17A1	1308	genome.wustl.edu	37	10	105812855	105812855	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000494.3	-1	reviewed	p.R625*	0.992	88	0%	62	48.4%	0	-	-	-	-	HMMPfam_Collagen
WDR96	80217	genome.wustl.edu	37	10	105922111	105922111	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434629	-1	known	p.S460L	0.000	251	0%	221	52.9%	0	-	-	-	-	NULL
SORCS1	114815	genome.wustl.edu	37	10	108447997	108447997	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.Q505*	1.000	145	0%	92	38%	0	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
NHLRC2	374354	genome.wustl.edu	37	10	115662298	115662298	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198514.2	+1	provisional	p.V480	0.324	181	0%	114	14%	11	36.3%	-	-	-	HMMPfam_NHL,superfamily_NHL repeat
WDR11	55717	genome.wustl.edu	37	10	122619655	122619655	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018117.11	+1	reviewed	p.R129	0.669	302	0%	230	45.2%	37	45.9%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
TACC2	10579	genome.wustl.edu	37	10	123842396	123842396	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491540	+1	known	p.G141S	0.000	39	2.6%	25	36%	2	0%	-	-	-	NULL
OAT	4942	genome.wustl.edu	37	10	126090306	126090306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000274.3	-1	reviewed	p.A335T	0.996	82	1.2%	50	56%	19	42.1%	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
C10orf137	26098	genome.wustl.edu	37	10	127452006	127452006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015608.2	+1	validated	p.A1194T	0.000	90	0%	71	56.3%	10	60%	unknown(0)	tolerated(0.63)	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	129217983	129217983	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.I1627	0.420	116	0%	108	46.3%	23	21.7%	-	-	-	superfamily_Cytochrome_c
DOCK1	1793	genome.wustl.edu	37	10	129245729	129245729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.V1874M	0.989	100	0%	67	23.9%	33	21.2%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PWWP2B	170394	genome.wustl.edu	37	10	134219444	134219444	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138499.3	+1	validated	p.C480	0.995	123	0%	78	23.1%	51	29.4%	-	-	-	superfamily_SSF63748
NKX6-2	84504	genome.wustl.edu	37	10	134598638	134598638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177400.2	-1	validated	p.R206W	1.000	82	0%	41	43.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_HOX,superfamily_Homeodomain_like
MTG1	92170	genome.wustl.edu	37	10	135215055	135215055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138384.2	+1	validated	p.G178	0.933	148	0%	97	53.6%	27	11.1%	-	-	-	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATHL1	80162	genome.wustl.edu	37	11	292048	292048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025092.4	+1	validated	p.R327C	0.709	47	0%	46	58.7%	40	10%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
ATHL1	80162	genome.wustl.edu	37	11	294187	294187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025092.4	+1	validated	p.T600M	0.964	113	0%	74	41.9%	30	16.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
HRAS	3265	genome.wustl.edu	37	11	533881	533881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130442.1	-1	reviewed	p.A59T	0.997	69	0%	46	56.5%	119	49.5%	benign(0.153)	deleterious(0.01)	neutral(0.419)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PHRF1	57661	genome.wustl.edu	37	11	607498	607498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020901.2	+1	validated	p.R680M	1.000	51	0%	36	41.7%	33	54.5%	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
MUC6	4588	genome.wustl.edu	37	11	1026400	1026400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005961.2	-1	validated	p.E825K	0.757	45	0%	40	40%	0	-	unknown(0)	deleterious(0.03)	-	superfamily_Serine proterase inhibitors
MUC2	4583	genome.wustl.edu	37	11	1102462	1102462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002457.2	+1	reviewed	p.E2612K	0.011	99	0%	60	48.3%	6	33.3%	unknown(0)	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
MUC5B	727897	genome.wustl.edu	37	11	1268289	1268289	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T3396	0.000	808	0%	578	39.1%	34	50%	-	-	-	NULL
CTSD	1509	genome.wustl.edu	37	11	1775240	1775240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001909.3	-1	reviewed	p.P319L	0.998	29	0%	12	50%	651	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Asp,superfamily_Pept_Aspartic
TRPM5	29850	genome.wustl.edu	37	11	2432667	2432667	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014555.3	-1	validated	p.D899	0.975	18	0%	19	36.8%	0	-	-	-	-	HMMPfam_Ion_trans
SLC22A18	5002	genome.wustl.edu	37	11	2946347	2946347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183233.2	+1	reviewed	p.V399M	0.779	39	0%	29	41.4%	18	72.2%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	superfamily_MFS_gen_substrate_transporter
PHLDA2	7262	genome.wustl.edu	37	11	2950345	2950345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003311.3	-1	reviewed	p.C84G	1.000	33	0%	25	28%	27	14.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MRGPRG	386746	genome.wustl.edu	37	11	3239726	3239726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000332314	-1	known	p.S106	0.000	16	0%	11	36.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ART1	417	genome.wustl.edu	37	11	3681250	3681250	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004314.2	+1	reviewed	p.S167	0.000	28	0%	24	45.8%	0	-	-	-	-	HMMPfam_ART,superfamily_SSF56399
OR52K1	390036	genome.wustl.edu	37	11	4510858	4510858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005171.2	+1	validated	p.C243Y	0.976	609	0.2%	413	43.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52I2	143502	genome.wustl.edu	37	11	4609001	4609001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005170.2	+1	validated	p.P320L	0.176	287	0.3%	224	41.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR51B4	79339	genome.wustl.edu	37	11	5322363	5322363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033179.2	-1	validated	p.T272A	0.381	144	0.7%	108	16.7%	0	-	benign(0.052)	deleterious(0)	neutral(0.448)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B4	79339	genome.wustl.edu	37	11	5322899	5322899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033179.2	-1	validated	p.A93V	0.000	184	0%	133	51.9%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM5	85363	genome.wustl.edu	37	11	5701053	5701053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033034.2	-1	reviewed	p.R119W	0.192	334	0%	269	46.5%	25	52%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-B_box,HMMSmart_SM00336
OR52N5	390075	genome.wustl.edu	37	11	5799344	5799344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001922.2	-1	validated	p.R174H	0.960	139	0%	106	94.3%	0	-	benign(0.041)	deleterious(0.02)	neutral(0.386)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCKBR	887	genome.wustl.edu	37	11	6291009	6291009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176875.2	+1	reviewed	p.V88I	0.996	134	0%	70	38.6%	0	-	probably_damaging(0.958)	tolerated(0.16)	neutral(0.461)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PRKCDBP	112464	genome.wustl.edu	37	11	6340770	6340770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145040.2	-1	reviewed	p.A137T	0.992	5	0.000	10	0.600	18	38.8%	probably_damaging(0.979)	tolerated(0.21)	neutral(0.466)	NULL
HPX	3263	genome.wustl.edu	37	11	6453232	6453232	+	Missense_Mutation	SNP	C	C	T	rs150117990	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000613.2	-1	reviewed	p.R284H	1.000	67	0%	63	50.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
DNHD1	144132	genome.wustl.edu	37	11	6588164	6588164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.R3809C	0.000	89	0%	59	44.1%	4	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ILK	3611	genome.wustl.edu	37	11	6629701	6629701	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014794.1	+1	reviewed	p.G111	0.824	236	0%	125	41.6%	104	46.1%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
DCHS1	8642	genome.wustl.edu	37	11	6661587	6661587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.V420I	1.000	57	0%	48	52.1%	0	-	benign(0.046)	tolerated(0.9)	neutral(0.003)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR2AG2	338755	genome.wustl.edu	37	11	6789245	6789245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004490.1	-1	provisional	p.T315M	0.001	210	0%	149	46.3%	0	-	benign(0.08)	deleterious(0.01)	neutral(0.411)	NULL
INSC	387755	genome.wustl.edu	37	11	15260582	15260582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031853.3	+1	provisional	p.R499Q	1.000	94	0%	77	53.2%	0	-	possibly_damaging(0.914)	tolerated(0.58)	neutral(0.371)	HMMSmart_SM00185,superfamily_ARM repeat
KCNJ11	3767	genome.wustl.edu	37	11	17409396	17409396	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000525.3	-1	reviewed	p.C81	1.000	96	0%	78	52.6%	1	100%	-	-	-	HMMPfam_IRK,superfamily_SSF81324
IGSF22	283284	genome.wustl.edu	37	11	18735548	18735548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173588.3	-1	validated	p.T649M	0.211	133	0%	72	50%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
PTPN5	84867	genome.wustl.edu	37	11	18762242	18762242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006906.1	-1	validated	p.R275C	0.994	66	0%	44	38.6%	0	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	superfamily_(Phosphotyrosine protein) phosphatases II
NAV2	89797	genome.wustl.edu	37	11	20114680	20114680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.R1954W	1.000	546	0%	372	49.7%	16	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DBX1	120237	genome.wustl.edu	37	11	20177891	20177891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029865.1	-1	provisional	p.R340W	0.979	22	0%	24	37.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
METTL15	196074	genome.wustl.edu	37	11	28232709	28232709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113528.1	+1	validated	p.A124V	0.993	234	0%	192	47.4%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Methyltransf_5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
WT1	7490	genome.wustl.edu	37	11	32413565	32413565	+	Missense_Mutation	SNP	C	C	A	rs121907903		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024426.3	-1	reviewed	p.R462L	1.000	286	0%	189	49.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EIF3M	10480	genome.wustl.edu	37	11	32605475	32605475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006360.3	+1	provisional	p.Q14H	1.000	62	0%	42	26.2%	178	11.7%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
NAT10	55226	genome.wustl.edu	37	11	34135344	34135344	+	Missense_Mutation	SNP	C	C	T	rs149812318	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024662.2	+1	validated	p.R152W	0.719	261	0%	197	42.6%	42	35.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1726
PDHX	8050	genome.wustl.edu	37	11	35016594	35016594	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003477.2	+1	reviewed	p.L461	0.976	192	0%	145	51%	35	51.4%	-	-	-	HMMPfam_2-oxoacid_dh,superfamily_SSF52777
LDLRAD3	143458	genome.wustl.edu	37	11	36103272	36103272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174902.2	+1	provisional	p.R88H	1.000	172	0%	97	51.5%	10	50%	probably_damaging(0.953)	tolerated(0.22)	neutral(0.439)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
TTC17	55761	genome.wustl.edu	37	11	43469611	43469611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018259.5	+1	validated	p.R909C	1.000	80	0%	58	51.7%	33	39.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48452
MAPK8IP1	9479	genome.wustl.edu	37	11	45924221	45924221	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005456.2	+1	reviewed	p.P301	0.090	14	0%	13	53.8%	91	48.3%	-	-	-	NULL
DGKZ	8525	genome.wustl.edu	37	11	46397884	46397884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105540.1	+1	reviewed	p.D888N	0.986	124	0%	111	38.7%	33	63.6%	benign(0.268)	tolerated(0.26)	neutral(0.062)	NULL
CHRM4	1132	genome.wustl.edu	37	11	46407624	46407624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000741.2	-1	reviewed	p.V162M	0.988	185	0%	109	53.2%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGAP1	392	genome.wustl.edu	37	11	46701781	46701781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004308.2	-1	provisional	p.R291Q	0.788	101	0%	67	10.4%	60	1.6%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
NUP160	23279	genome.wustl.edu	37	11	47800667	47800667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015231.1	-1	validated	p.R1434Q	1.000	231	0%	167	46.1%	83	45.7%	unknown(0)	-	-	NULL
OR4X1	390113	genome.wustl.edu	37	11	48285974	48285974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004726.1	+1	provisional	p.A188T	0.022	279	0.4%	192	45.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4C16	219428	genome.wustl.edu	37	11	55339882	55339882	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004701.2	+1	validated	p.S93	0.000	334	0%	278	46%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPRYD5	84767	genome.wustl.edu	37	11	55653151	55653151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032681.3	+1	validated	p.R83W	0.002	72	0%	40	52.5%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	superfamily_RING/U-box
PRG3	10394	genome.wustl.edu	37	11	57147100	57147100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006093.3	-1	validated	p.S81L	0.015	150	0%	98	38.8%	0	-	benign(0.012)	deleterious(0.02)	neutral(0.384)	NULL
CTNND1	1500	genome.wustl.edu	37	11	57583393	57583393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.E939K	1.000	250	0%	194	48.5%	1	0%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	NULL
ZFP91	80829	genome.wustl.edu	37	11	58378437	58378437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053023.3	+1	reviewed	p.E211A	1.000	201	0%	149	46.3%	36	47.2%	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
OR4D9	390199	genome.wustl.edu	37	11	59282859	59282859	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004711.1	+1	provisional	p.A158	0.001	188	0%	145	46.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OSBP	5007	genome.wustl.edu	37	11	59361520	59361520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002556.2	-1	reviewed	p.R507Q	0.993	127	0%	96	28.1%	54	22.2%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_Oxysterol_BP
MRPL16	54948	genome.wustl.edu	37	11	59573897	59573897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017840.3	-1	reviewed	p.R227W	0.994	471	0%	341	44%	94	47.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CD5	921	genome.wustl.edu	37	11	60891392	60891392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014207.3	+1	validated	p.T421M	0.185	81	0%	83	24.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DAGLA	747	genome.wustl.edu	37	11	61491044	61491044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006133.1	+1	validated	p.R183L	1.000	74	0%	55	58.2%	0	-	possibly_damaging(0.633)	tolerated(0.14)	deleterious(0.471)	NULL
RAB3IL1	5866	genome.wustl.edu	37	11	61672275	61672275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013401.2	-1	provisional	p.R246M	1.000	76	0%	47	42.6%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
INCENP	3619	genome.wustl.edu	37	11	61897376	61897376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040694.1	+1	validated	p.R126H	0.952	25	0.000	9	0.667	28	57.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TUT1	64852	genome.wustl.edu	37	11	62348917	62348917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022830.2	-1	reviewed	p.R177Q	1.000	58	0%	40	57.5%	32	62.5%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	superfamily_Nucleotidyltransferase
TUT1	64852	genome.wustl.edu	37	11	62358996	62358996	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000476907	-1	known	p.Q26*	0.009	86	0%	65	53.8%	5	40%	-	-	-	NULL
EML3	256364	genome.wustl.edu	37	11	62373584	62373584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153265.2	-1	validated	p.R536H	1.000	58	0%	44	54.5%	6	50%	possibly_damaging(0.685)	tolerated(0.06)	deleterious(0.567)	HMMSmart_SM00320,superfamily_WD40 repeat-like
GANAB	23193	genome.wustl.edu	37	11	62402392	62402392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198335.2	-1	validated	p.R154Q	0.002	179	0%	125	48.8%	227	47.1%	benign(0.012)	tolerated(0.49)	neutral(0.011)	NULL
TAF6L	10629	genome.wustl.edu	37	11	62546361	62546361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006473.2	+1	reviewed	p.L153V	1.000	161	0%	102	12.7%	18	22.2%	possibly_damaging(0.737)	deleterious(0.01)	deleterious(0.675)	NULL
CHRM1	1128	genome.wustl.edu	37	11	62677245	62677245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000738.2	-1	reviewed	p.R443H	1.000	147	0%	79	51.9%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Family A G protein-coupled receptor-like
PLCB3	5331	genome.wustl.edu	37	11	64028887	64028887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.E583K	1.000	98	0%	45	51.1%	44	52.2%	benign(0.03)	deleterious(0.05)	neutral(0.347)	superfamily_PLC-like phosphodiesterases
PLCB3	5331	genome.wustl.edu	37	11	64033989	64033989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.R1127W	0.195	106	0.9%	71	53.5%	49	46.9%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_PLC-beta_C
BAD	572	genome.wustl.edu	37	11	64039220	64039220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394531	-1	known	p.R128K	0.518	28	0%	21	57.1%	57	45.6%	unknown(0)	-	-	HMMPfam_Bcl-2_BAD
GPR137	56834	genome.wustl.edu	37	11	64055278	64055278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020155.3	+1	validated	p.R165W	0.818	46	0%	44	34.1%	23	43.4%	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
NRXN2	9379	genome.wustl.edu	37	11	64410186	64410186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138734.1	-1	reviewed	p.A31T	0.885	29	0%	21	71.4%	0	-	-	-	-	NULL
SF1	7536	genome.wustl.edu	37	11	64536711	64536711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004630.3	-1	reviewed	p.R255W	0.989	185	0%	127	49.6%	235	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
CDCA5	113130	genome.wustl.edu	37	11	64847073	64847073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080668.3	-1	validated	p.R144C	0.993	37	0%	43	53.5%	24	45.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sororin
ZFPL1	7542	genome.wustl.edu	37	11	64852274	64852274	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006782.3	+1	validated	e1+2	1.000	73	0%	38	34.2%	10	90%	-	-	-	-
ZFPL1	7542	genome.wustl.edu	37	11	64855520	64855520	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006782.3	+1	validated	p.A289	0.991	37	0%	24	37.5%	56	26.7%	-	-	-	NULL
LOC100131416	100131416	genome.wustl.edu	37	11	64878804	64878804	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716064.2	-1	model	p.R122*	0.009	60	0%	38	34.2%	113	61.9%	benign(0.025)	-	-	NULL
EHBP1L1	254102	genome.wustl.edu	37	11	65346592	65346592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099409.1	+1	validated	p.R50C	1.000	77	0%	37	67.6%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CATSPER1	117144	genome.wustl.edu	37	11	65793402	65793402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.G150D	0.000	94	0%	60	50%	0	-	possibly_damaging(0.778)	deleterious(0.01)	deleterious(0.697)	NULL
KLC2	64837	genome.wustl.edu	37	11	66030471	66030471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134775.1	+1	validated	p.V239A	1.000	48	0%	46	56.5%	37	32.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Rab5-bind,PatternScan_KINESIN_LIGHT,superfamily_SSF48452
KLC2	64837	genome.wustl.edu	37	11	66034015	66034015	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394065	+1	known	p.A474	0.000	18	0%	15	53.3%	0	-	-	-	-	NULL
YIF1A	10897	genome.wustl.edu	37	11	66053209	66053209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020470.2	-1	validated	p.V150M	1.000	76	1.3%	38	50%	107	53.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_YIF1
NPAS4	266743	genome.wustl.edu	37	11	66188767	66188767	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178864.3	+1	validated	p.Y39	1.000	41	0%	23	47.8%	0	-	-	-	-	NULL
ACTN3	89	genome.wustl.edu	37	11	66325542	66325542	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104.1	+1	reviewed	p.G391	1.000	53	0%	43	46.5%	0	-	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
PC	5091	genome.wustl.edu	37	11	66619313	66619313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.R644W	0.999	95	0%	71	45.1%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMGL-like,superfamily_SSF51569
PC	5091	genome.wustl.edu	37	11	66620053	66620053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.P561L	0.263	69	0%	37	51.4%	5	60%	benign(0.04)	deleterious(0)	neutral(0.447)	superfamily_SSF51569
C11orf86	254439	genome.wustl.edu	37	11	66742874	66742874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136485.1	+1	predicted	p.R14Q	0.047	16	0%	16	68.8%	0	-	probably_damaging(0.986)	tolerated(0.25)	deleterious(0.471)	NULL
KDM2A	22992	genome.wustl.edu	37	11	67017760	67017760	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012308.2	+1	reviewed	p.R753	0.143	57	0%	36	55.6%	43	48.8%	-	-	-	NULL
ADRBK1	156	genome.wustl.edu	37	11	67049973	67049973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001619.3	+1	reviewed	p.W374R	1.000	130	0%	93	45.2%	59	52.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SSH3	54961	genome.wustl.edu	37	11	67072333	67072333	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376757	+1	known	p.Q16*	0.000	94	0%	54	44.4%	41	41.4%	benign(0)	deleterious(0.05)	neutral(0.345)	HMMSmart_SM00195
RAD9A	5883	genome.wustl.edu	37	11	67163283	67163283	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004584.2	+1	reviewed	p.H182	1.000	64	0%	51	51%	17	52.9%	-	-	-	HMMPfam_Rad9
PITPNM1	9600	genome.wustl.edu	37	11	67261304	67261304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004910.2	-1	validated	p.D1005N	1.000	17	0%	10	60%	70	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBX10	347853	genome.wustl.edu	37	11	67399304	67399304	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005995.3	-1	provisional	p.L310	0.954	299	0%	197	40.1%	0	-	-	-	-	NULL
UNC93B1	81622	genome.wustl.edu	37	11	67764105	67764105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000227471	-1	known	p.E352K	1.000	77	0%	60	48.3%	57	49.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TCIRG1	10312	genome.wustl.edu	37	11	67811044	67811044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006019.2	+1	reviewed	p.P213S	0.336	39	0%	21	33.3%	19	36.8%	benign(0.008)	tolerated(0.22)	neutral(0.042)	HMMPfam_V_ATPase_I
MTL5	9633	genome.wustl.edu	37	11	68506227	68506227	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004923.3	-1	reviewed	p.N286	0.000	190	0%	139	47.5%	5	20%	-	-	-	NULL
MRGPRF	116535	genome.wustl.edu	37	11	68772956	68772956	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098515.1	-1	validated	p.Y274	0.992	67	0%	27	44.4%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SHANK2	22941	genome.wustl.edu	37	11	70333710	70333710	+	Silent	SNP	C	C	T	rs141694314	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012309.3	-1	reviewed	p.P301	0.968	285	0%	168	45.8%	1	0%	-	-	-	NULL
ARAP1	116985	genome.wustl.edu	37	11	72422184	72422184	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040118.2	-1	reviewed	p.D365	0.022	123	0%	94	36.2%	21	57.1%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP1	116985	genome.wustl.edu	37	11	72437998	72437998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040118.2	-1	reviewed	p.R59H	0.996	47	0%	40	42.5%	9	55.5%	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
GDPD5	81544	genome.wustl.edu	37	11	75146607	75146607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030792.6	-1	validated	p.G588D	0.000	45	0%	34	52.9%	15	26.6%	benign(0)	tolerated(0.91)	-	NULL
LRRC32	2615	genome.wustl.edu	37	11	76371492	76371492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128922.1	-1	reviewed	p.A382V	0.000	22	0%	13	76.9%	3	33.3%	benign(0.001)	tolerated(0.3)	neutral(0.029)	superfamily_SSF52058
MYO7A	4647	genome.wustl.edu	37	11	76900500	76900500	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000260.3	+1	reviewed	p.S1205	0.001	146	0%	78	39.7%	0	-	-	-	-	HMMPfam_MyTH4,HMMSmart_SM00139
ALG8	79053	genome.wustl.edu	37	11	77824999	77824999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024079.4	-1	reviewed	p.R237H	0.928	324	0%	244	13.9%	47	2.1%	benign(0.067)	tolerated(0.09)	neutral(0.301)	HMMPfam_Alg6_Alg8
ODZ4	26011	genome.wustl.edu	37	11	78369590	78369590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.H2608R	1.000	77	0%	51	43.1%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78380658	78380658	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.R2244	1.000	233	0%	156	42.3%	0	-	-	-	-	NULL
C11orf82	220042	genome.wustl.edu	37	11	82641316	82641316	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145018.3	+1	validated	p.T131	1.000	220	0.5%	169	43.2%	0	-	-	-	-	NULL
ANKRD42	338699	genome.wustl.edu	37	11	82921384	82921384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182603.2	+1	validated	p.R97W	0.996	242	0%	166	53.6%	7	28.5%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PICALM	8301	genome.wustl.edu	37	11	85711816	85711816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007166.2	-1	validated	p.R342C	1.000	150	0%	119	47.9%	57	36.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
EED	8726	genome.wustl.edu	37	11	85988132	85988132	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003797.2	+1	reviewed	p.S359	1.000	385	0%	352	42.9%	33	45.4%	-	-	-	superfamily_WD40 repeat-like
FZD4	8322	genome.wustl.edu	37	11	86662486	86662486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012193.2	-1	reviewed	p.G438W	1.000	229	0%	179	22.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
GRM5	2915	genome.wustl.edu	37	11	88780513	88780513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.S176R	1.000	91	0%	72	41.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_Periplasmic binding protein-like I
ENSG00000204455	0	genome.wustl.edu	37	11	89595824	89595824	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311917	+1	known	p.E385	0.000	414	0%	289	22.1%	0	-	-	-	-	HMMPfam_SPRY
ENSG00000214391	0	genome.wustl.edu	37	11	90016135	90016135	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318973	+1	known	p.R104	1.000	354	0%	243	13.6%	675	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
KDELC2	143888	genome.wustl.edu	37	11	108361813	108361813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153705.4	-1	validated	p.R95M	1.000	192	0%	150	37.3%	1	100%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
DDX10	1662	genome.wustl.edu	37	11	108535928	108535928	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004398.2	+1	reviewed	p.P16	0.998	42	0%	47	61.7%	7	71.4%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZC3H12C	85463	genome.wustl.edu	37	11	110007998	110007998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033390.1	+1	validated	p.T211M	0.962	124	0%	105	54.3%	0	-	benign(0.32)	tolerated(0.11)	neutral(0.372)	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110451320	110451320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020809.2	-1	validated	p.G784C	0.000	81	0%	71	14.1%	1	0%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
BTG4	54766	genome.wustl.edu	37	11	111368030	111368030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017589.2	-1	reviewed	p.S139L	0.003	197	0%	144	50%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
IL10RA	3587	genome.wustl.edu	37	11	117869687	117869687	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001558.3	+1	reviewed	p.L356	0.000	67	0%	41	41.5%	1	0%	-	-	-	NULL
UBE4A	9354	genome.wustl.edu	37	11	118261413	118261413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004788.2	+1	reviewed	p.R944H	1.000	241	0%	180	42.2%	27	59.2%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Ufd2P_core
PHLDB1	23187	genome.wustl.edu	37	11	118501973	118501973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144758.1	+1	validated	p.R626Q	1.000	33	0%	22	40.9%	22	59%	possibly_damaging(0.745)	tolerated(0.07)	deleterious(0.593)	NULL
C2CD2L	9854	genome.wustl.edu	37	11	118983560	118983560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014807.3	+1	validated	p.R455W	1.000	69	0%	60	55%	22	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCG4	64137	genome.wustl.edu	37	11	119029419	119029419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142505.1	+1	reviewed	p.M440I	1.000	169	0%	125	44%	1	100%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	HMMPfam_ABC2_membrane
PVRL1	5818	genome.wustl.edu	37	11	119535724	119535724	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002855.4	-1	reviewed	p.G429	0.998	14	0%	15	33.3%	25	80%	-	-	-	NULL
PVRL1	5818	genome.wustl.edu	37	11	119535730	119535732	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002855.4	-1	reviewed	p.K427in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DDX25	29118	genome.wustl.edu	37	11	125775165	125775165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013264.3	+1	reviewed	p.R41Q	0.021	183	0%	132	45.5%	0	-	probably_damaging(0.974)	tolerated(0.33)	neutral(0.440)	NULL
SRPR	6734	genome.wustl.edu	37	11	126135230	126135230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003139.3	-1	reviewed	p.R415H	1.000	80	0%	45	51.1%	149	39.5%	benign(0.001)	tolerated(0.23)	neutral(0.042)	superfamily_SSF52540
NFRKB	4798	genome.wustl.edu	37	11	129739725	129739725	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006165.3	-1	validated	p.G1090	0.906	97	0%	70	40%	40	40%	-	-	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129755399	129755399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006165.3	-1	validated	p.R204C	1.000	57	0%	36	63.9%	23	69.5%	unknown(0)	deleterious(0)	-	NULL
GLB1L3	112937	genome.wustl.edu	37	11	134147689	134147689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.L82P	0.878	126	0%	88	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
KDM5A	5927	genome.wustl.edu	37	12	459827	459827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.P423L	1.000	210	0%	165	43.6%	9	55.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ERC1	23085	genome.wustl.edu	37	12	1219383	1219383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.R396H	1.000	299	0%	219	50.7%	14	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cast
CACNA1C	775	genome.wustl.edu	37	12	2716175	2716175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.G1099W	1.000	119	0%	85	48.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FKBP4	2288	genome.wustl.edu	37	12	2909014	2909014	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002014.3	+1	reviewed	e6-2	0.999	384	0%	281	43.1%	0	-	-	-	-	-
KCNA6	3742	genome.wustl.edu	37	12	4920229	4920229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.L341H	1.000	86	0%	66	37.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNA6	3742	genome.wustl.edu	37	12	4920724	4920724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.R506Q	0.771	144	0%	71	26.8%	0	-	benign(0.003)	tolerated(0.33)	neutral(0.024)	NULL
NTF3	4908	genome.wustl.edu	37	12	5603411	5603411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102654.1	+1	reviewed	p.A24T	1.000	211	0.5%	136	46.3%	0	-	possibly_damaging(0.792)	tolerated(0.34)	neutral(0.320)	NULL
VWF	7450	genome.wustl.edu	37	12	6128410	6128410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.R1392W	0.000	67	0%	53	45.3%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PLEKHG6	55200	genome.wustl.edu	37	12	6427966	6427966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144856.1	+1	validated	p.R444H	0.864	348	0%	221	47.5%	9	22.2%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
IFFO1	25900	genome.wustl.edu	37	12	6664575	6664575	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039670.1	-1	validated	p.P207	0.947	94	0%	74	56.8%	0	-	-	-	-	NULL
GNB3	2784	genome.wustl.edu	37	12	6954872	6954872	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002075.2	+1	reviewed	p.T274	0.006	68	0%	41	43.9%	4	50%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CD163L1	283316	genome.wustl.edu	37	12	7559293	7559293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.A308T	0.136	428	0%	288	50%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
SLC2A14	144195	genome.wustl.edu	37	12	7966968	7966968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153449.2	-1	provisional	p.G503S	0.000	294	0%	217	79.3%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
A2ML1	144568	genome.wustl.edu	37	12	8998798	8998798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144670.3	+1	validated	p.E555K	0.787	391	0.3%	309	46.6%	1	100%	possibly_damaging(0.643)	deleterious(0.01)	deleterious(0.631)	HMMPfam_A2M_N_2
CLEC1B	51266	genome.wustl.edu	37	12	10150920	10150920	+	Missense_Mutation	SNP	C	C	T	rs150507224	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016509.3	-1	validated	p.V42M	0.059	368	0.8%	308	42.2%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
STYK1	55359	genome.wustl.edu	37	12	10782093	10782093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018423.2	-1	validated	p.R211Q	1.000	83	0%	70	48.6%	0	-	possibly_damaging(0.482)	tolerated(0.16)	neutral(0.220)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TAS2R50	259296	genome.wustl.edu	37	12	11139402	11139402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176890.2	-1	validated	p.G20R	0.057	66	0%	53	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
LRP6	4040	genome.wustl.edu	37	12	12302006	12302006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002336.2	-1	reviewed	p.R1026C	1.000	303	0%	231	43.3%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
GRIN2B	2904	genome.wustl.edu	37	12	13722885	13722885	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.C746	1.000	34	0%	36	52.8%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
ATF7IP	55729	genome.wustl.edu	37	12	14587305	14587305	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.P531	1.000	273	0%	214	23.4%	13	7.6%	-	-	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14589100	14589100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.R569H	0.996	299	0%	223	45.7%	9	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PDE3A	5139	genome.wustl.edu	37	12	20769231	20769231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.S446L	1.000	180	0%	115	40%	4	75%	possibly_damaging(0.616)	deleterious(0.01)	deleterious(0.620)	NULL
SLCO1B3	28234	genome.wustl.edu	37	12	21011428	21011428	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019844.2	+1	validated	p.P94	0.870	617	0.2%	469	41.4%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
GYS2	2998	genome.wustl.edu	37	12	21693497	21693497	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.I552	0.943	149	0%	95	42.1%	0	-	-	-	-	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
FGD4	121512	genome.wustl.edu	37	12	32791771	32791771	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266482	+1	known	p.G447	0.000	179	0%	151	45%	0	-	-	-	-	NULL
KIF21A	55605	genome.wustl.edu	37	12	39752122	39752122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017641.3	-1	validated	p.T358M	1.000	467	0%	355	49%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
DBX2	440097	genome.wustl.edu	37	12	45410277	45410277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004329.2	-1	validated	p.G271D	0.004	169	0%	129	45.7%	0	-	possibly_damaging(0.68)	deleterious(0.03)	deleterious(0.607)	NULL
ARID2	196528	genome.wustl.edu	37	12	46245258	46245258	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152641.2	+1	validated	p.Q1118*	1.000	114	0%	91	50.5%	18	11.1%	-	-	-	NULL
RND1	27289	genome.wustl.edu	37	12	49251932	49251932	+	Silent	SNP	C	C	T	rs145827381	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014470.3	-1	validated	p.T182	0.274	281	0%	226	46.5%	2	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000246003	0	genome.wustl.edu	37	12	49690329	49690329	+	RNA	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501178	-1	known	NULL	0.000	190	0%	124	48.4%	0	-	-	-	-	-
ANKRD33	341405	genome.wustl.edu	37	12	52285057	52285057	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182608.3	+1	validated	p.Q443*	0.655	142	0%	94	45.7%	0	-	-	-	-	NULL
ACVRL1	94	genome.wustl.edu	37	12	52310000	52310000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000020.2	+1	reviewed	p.R410H	0.999	116	0%	59	44.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
KRT75	9119	genome.wustl.edu	37	12	52827658	52827658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004693.2	-1	reviewed	p.R144Q	0.211	405	0%	271	45.4%	0	-	possibly_damaging(0.525)	tolerated(0.62)	neutral(0.181)	NULL
KRT6A	3853	genome.wustl.edu	37	12	52882317	52882317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005554.3	-1	reviewed	p.A407T	0.785	204	0%	171	43.9%	226	42%	benign(0.032)	tolerated(0.47)	neutral(0.012)	HMMPfam_Filament
KRT3	3850	genome.wustl.edu	37	12	53184087	53184087	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057088.2	-1	reviewed	p.Y542*	0.003	90	0%	66	48.5%	0	-	-	-	-	NULL
KRT3	3850	genome.wustl.edu	37	12	53185493	53185493	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057088.2	-1	reviewed	p.I432	0.024	429	0%	270	51.9%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
TENC1	23371	genome.wustl.edu	37	12	53456938	53456938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015319.2	+1	reviewed	p.R1307W	1.000	57	0%	46	56.5%	10	30%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729
ESPL1	9700	genome.wustl.edu	37	12	53664581	53664581	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012291.4	+1	validated	p.T456	1.000	174	0%	115	47.8%	5	40%	-	-	-	NULL
MAP3K12	7786	genome.wustl.edu	37	12	53878849	53878849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006301.2	-1	reviewed	p.R344H	1.000	240	0%	160	48.1%	5	20%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	superfamily_Kinase_like,HMMPfam_Pkinase
CALCOCO1	57658	genome.wustl.edu	37	12	54109663	54109663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020898.2	-1	validated	p.G392S	0.830	99	0%	61	37.7%	37	48.6%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_CALCOCO1
CALCOCO1	57658	genome.wustl.edu	37	12	54119005	54119005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020898.2	-1	validated	p.R8W	1.000	241	0%	154	45.5%	43	55.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NFE2	4778	genome.wustl.edu	37	12	54686463	54686463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136023.1	-1	provisional	p.R273W	0.932	34	0%	20	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1
OR6C1	390321	genome.wustl.edu	37	12	55714600	55714600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005182.1	+1	provisional	p.T73A	1.000	176	0%	146	46.6%	0	-	benign(0.262)	deleterious(0.02)	neutral(0.411)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ESYT1	23344	genome.wustl.edu	37	12	56525270	56525270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015292.2	+1	validated	p.V242I	0.297	303	0%	197	44.7%	66	45.4%	possibly_damaging(0.706)	tolerated(0.24)	neutral(0.291)	NULL
HSD17B6	8630	genome.wustl.edu	37	12	57167813	57167813	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003725.2	+1	reviewed	p.A59	0.596	133	0%	97	38.1%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
MYO1A	4640	genome.wustl.edu	37	12	57422573	57422573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005379.2	-1	reviewed	p.K1033R	1.000	241	0.4%	172	44.2%	0	-	possibly_damaging(0.848)	tolerated(0.16)	neutral(0.385)	HMMPfam_Myosin_TH1
INHBE	83729	genome.wustl.edu	37	12	57850554	57850554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031479.3	+1	validated	p.L326I	1.000	216	0%	140	43.6%	0	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
MARS	4141	genome.wustl.edu	37	12	57894208	57894208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004990.2	+1	reviewed	p.R399H	1.000	260	0%	145	34.5%	73	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1g,superfamily_SSF52374
OS9	10956	genome.wustl.edu	37	12	58090147	58090147	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006812.3	+1	reviewed	p.A190	0.971	179	0%	108	52.8%	151	47.6%	-	-	-	superfamily_Mannose 6-phosphate receptor domain
OS9	10956	genome.wustl.edu	37	12	58114213	58114213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006812.3	+1	reviewed	p.R597H	0.927	263	0%	189	47.6%	174	41.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
AGAP2	116986	genome.wustl.edu	37	12	58125404	58125404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122772.1	-1	validated	p.E659K	0.999	139	0.7%	120	42.5%	1	0%	possibly_damaging(0.945)	tolerated(0.27)	neutral(0.423)	NULL
AVIL	10677	genome.wustl.edu	37	12	58201264	58201264	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006576.3	-1	reviewed	p.H447	0.378	100	0%	113	46%	2	50%	-	-	-	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
PPM1H	57460	genome.wustl.edu	37	12	63195669	63195669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020700.1	-1	validated	p.R228H	1.000	22	0%	22	22.7%	4	25%	probably_damaging(0.997)	tolerated(0.3)	deleterious(0.495)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
LRRC10	376132	genome.wustl.edu	37	12	70003888	70003888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201550.2	-1	provisional	p.T244M	0.937	141	0%	107	57%	0	-	possibly_damaging(0.871)	deleterious(0)	deleterious(0.783)	NULL
BEST3	144453	genome.wustl.edu	37	12	70048916	70048916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032735.2	-1	validated	p.P593L	0.985	126	0%	106	41.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72029253	72029253	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144982.4	-1	validated	p.S736	1.000	313	0%	240	47.5%	7	14.2%	-	-	-	NULL
TMEM19	55266	genome.wustl.edu	37	12	72091182	72091182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018279.3	+1	validated	p.A169T	1.000	237	0%	162	46.9%	15	40%	probably_damaging(0.998)	tolerated(0.37)	deleterious(0.493)	HMMPfam_DUF92
PTPRQ	374462	genome.wustl.edu	37	12	80943267	80943267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.Q1347*	0.001	180	0%	129	16.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TMTC2	160335	genome.wustl.edu	37	12	83251240	83251240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152588.1	+1	provisional	p.A179T	0.998	147	0.7%	122	40.2%	15	46.6%	benign(0.048)	tolerated(0.07)	neutral(0.322)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85497838	85497838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.S1089N	1.000	137	0%	97	43.3%	0	-	probably_damaging(0.98)	tolerated(0.05)	deleterious(0.769)	HMMSmart_SM00369,superfamily_RNI-like
POC1B	282809	genome.wustl.edu	37	12	89860666	89860666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172240.1	-1	provisional	p.H305Y	0.001	394	0%	377	47.7%	29	58.6%	benign(0.052)	tolerated(0.11)	neutral(0.275)	NULL
METAP2	10988	genome.wustl.edu	37	12	95868078	95868078	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006838.3	+1	reviewed	p.K41	1.000	161	0%	92	40.2%	55	52.7%	-	-	-	NULL
LTA4H	4048	genome.wustl.edu	37	12	96400102	96400102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000895.1	-1	provisional	p.T507M	0.995	254	0.4%	219	44.7%	222	52.2%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_Leuk-A4-hydro_C,superfamily_ARM repeat
C12orf63	374467	genome.wustl.edu	37	12	97073407	97073407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	p.V290M	0.997	145	0%	95	50.5%	0	-	unknown(0)	deleterious(0.01)	-	NULL
NEDD1	121441	genome.wustl.edu	37	12	97330475	97330475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135175.1	+1	validated	p.R276Q	1.000	99	0%	101	40.6%	13	46.1%	probably_damaging(1)	tolerated(0.48)	deleterious(0.510)	HMMSmart_SM00320,superfamily_WD40 repeat-like
UHRF1BP1L	23074	genome.wustl.edu	37	12	100441380	100441380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.P1337S	0.977	230	0%	148	39.2%	12	58.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102158602	102158602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.V698A	0.532	111	0%	75	46.7%	19	52.6%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	NULL
STAB2	55576	genome.wustl.edu	37	12	104111599	104111599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.L1555F	0.337	232	0%	156	46.2%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	superfamily_SSF57196
TCP11L2	255394	genome.wustl.edu	37	12	106715429	106715429	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152772.1	+1	provisional	p.R194*	0.802	284	0%	211	40.3%	4	0%	-	-	-	HMMPfam_Tcp11
POLR3B	55703	genome.wustl.edu	37	12	106890563	106890563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	p.A951T	1.000	233	0%	164	47%	15	60%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR3B	55703	genome.wustl.edu	37	12	106890685	106890685	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	p.S991	0.017	282	0%	185	50.3%	12	33.3%	-	-	-	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
RFX4	5992	genome.wustl.edu	37	12	107125982	107125982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213594.1	+1	reviewed	p.R476W	1.000	143	0%	127	50.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASCL4	121549	genome.wustl.edu	37	12	108169003	108169003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203436.2	+1	validated	p.T4M	0.000	50	0%	36	52.8%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
SART3	9733	genome.wustl.edu	37	12	108931364	108931364	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014706.3	-1	reviewed	p.F403	0.809	182	0%	128	42.2%	23	52.1%	-	-	-	HMMSmart_SM00386,superfamily_TPR-like
ACACB	32	genome.wustl.edu	37	12	109629663	109629663	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.P769	0.231	251	0%	185	37.3%	1	0%	-	-	-	NULL
FOXN4	121643	genome.wustl.edu	37	12	109725720	109725720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213596.2	-1	validated	p.L133M	0.994	24	0%	11	45.5%	2	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
MYO1H	283446	genome.wustl.edu	37	12	109876413	109876413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101421.3	+1	provisional	p.R755Q	0.994	135	0%	106	45.3%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GIT2	9815	genome.wustl.edu	37	12	110421484	110421484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057169.3	-1	reviewed	p.V141M	1.000	156	0%	151	45.7%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LOC100287839	100287839	genome.wustl.edu	37	12	112605307	112605307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343213.1	+1	model	p.V261I	0.049	90	0%	40	42.5%	18	50%	-	-	-	NULL
RPL6	6128	genome.wustl.edu	37	12	112843167	112843167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000970.3	-1	reviewed	p.T243M	1.000	42	0%	26	38.5%	1109	45.1%	possibly_damaging(0.668)	deleterious(0)	deleterious(0.681)	HMMPfam_Ribosomal_L6e
TPCN1	53373	genome.wustl.edu	37	12	113705711	113705711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143819.1	+1	validated	p.R232C	1.000	172	0%	126	42.1%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MED13L	23389	genome.wustl.edu	37	12	116399188	116399188	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.Q2172	1.000	120	0%	89	48.3%	15	60%	-	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120128209	120128209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.R1936H	1.000	32	0%	36	55.6%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CIT	11113	genome.wustl.edu	37	12	120151298	120151298	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.L1446	1.000	116	0%	53	47.2%	3	66.6%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CIT	11113	genome.wustl.edu	37	12	120271915	120271915	+	Missense_Mutation	SNP	C	C	T	rs35593907		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.V212I	0.856	154	0%	126	33.3%	4	75%	benign(0.111)	tolerated(0.16)	neutral(0.068)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RNF10	9921	genome.wustl.edu	37	12	121001190	121001190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014868.4	+1	reviewed	p.T432M	0.003	254	0%	131	50.4%	117	50.4%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
ANAPC5	51433	genome.wustl.edu	37	12	121773498	121773498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016237.4	-1	reviewed	p.R263H	1.000	201	0.5%	209	46.4%	101	56.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_TPR-like
SETD1B	23067	genome.wustl.edu	37	12	122260949	122260949	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.A1445	0.001	6	0.000	13	0.538	20	60%	-	-	-	NULL
SETD1B	23067	genome.wustl.edu	37	12	122263261	122263261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.A1733T	0.001	53	0%	47	44.7%	44	50%	unknown(0)	-	-	NULL
VPS33A	65082	genome.wustl.edu	37	12	122724464	122724464	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022916.4	-1	validated	p.T375	0.608	174	0.6%	151	40.4%	13	23%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
VPS33A	65082	genome.wustl.edu	37	12	122729240	122729240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022916.4	-1	validated	p.T282M	1.000	185	0%	117	43.6%	18	55.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sec1,superfamily_Sec1-like
VPS33A	65082	genome.wustl.edu	37	12	122735567	122735567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022916.4	-1	validated	p.T188M	1.000	75	0%	53	60.4%	23	47.8%	probably_damaging(0.976)	tolerated(0.13)	deleterious(0.670)	HMMPfam_Sec1,superfamily_Sec1-like
HIP1R	9026	genome.wustl.edu	37	12	123346288	123346288	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003959.1	+1	validated	p.L1065	0.000	156	0%	87	55.2%	44	56.8%	-	-	-	NULL
PITPNM2	57605	genome.wustl.edu	37	12	123470878	123470878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020845.2	-1	validated	p.A1249V	1.000	4	0.000	7	0.857	2	0%	benign(0.157)	tolerated(0.14)	neutral(0.264)	NULL
PITPNM2	57605	genome.wustl.edu	37	12	123519086	123519086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020845.2	-1	validated	p.R18C	1.000	128	0%	77	55.8%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_IP_trans,superfamily_Bet v1-like
SBNO1	55206	genome.wustl.edu	37	12	123795629	123795629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018183.3	-1	validated	p.R1089C	1.000	214	0%	193	15%	6	16.6%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
SNRNP35	11066	genome.wustl.edu	37	12	123950394	123950394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_180699.2	+1	reviewed	p.R108C	1.000	115	0%	95	46.3%	40	50%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TCTN2	79867	genome.wustl.edu	37	12	124189110	124189110	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024809.3	+1	validated	p.P548	0.000	87	0%	71	50.7%	25	48%	-	-	-	NULL
FZD10	11211	genome.wustl.edu	37	12	130648605	130648605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007197.2	+1	reviewed	p.R373H	1.000	85	0%	56	51.8%	8	75%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Frizzled
FBRSL1	57666	genome.wustl.edu	37	12	133149178	133149178	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142641.1	+1	validated	p.F518	1.000	204	0%	140	45%	66	33.3%	-	-	-	NULL
FBRSL1	57666	genome.wustl.edu	37	12	133158343	133158343	+	Silent	SNP	G	G	A	rs184339754	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142641.1	+1	validated	p.P686	0.570	19	0%	10	60%	107	44.8%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133214683	133214683	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.Y1865	0.968	216	0%	135	47.4%	29	58.6%	-	-	-	HMMPfam_DUF1744
GOLGA3	2802	genome.wustl.edu	37	12	133350753	133350753	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005895.3	-1	reviewed	p.Q1433*	1.000	95	0%	79	54.4%	23	56.5%	-	-	-	NULL
GOLGA3	2802	genome.wustl.edu	37	12	133354393	133354393	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005895.3	-1	reviewed	e18-2	1.000	45	0%	21	23.8%	0	-	-	-	-	-
PARP4	143	genome.wustl.edu	37	13	25075900	25075900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006437.3	-1	reviewed	p.V69I	0.004	278	0%	213	44.1%	28	42.8%	benign(0.003)	tolerated(1)	-	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
LNX2	222484	genome.wustl.edu	37	13	28127483	28127483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.A547V	0.323	105	0%	80	55%	19	36.8%	benign(0)	tolerated(1)	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PDX1	3651	genome.wustl.edu	37	13	28498640	28498640	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000209.3	+1	reviewed	p.G218	0.000	28	0%	23	26.1%	0	-	-	-	-	NULL
FLT3	2322	genome.wustl.edu	37	13	28588590	28588590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.A953V	0.992	193	0%	149	52.3%	0	-	possibly_damaging(0.712)	tolerated(0.11)	deleterious(0.529)	NULL
FLT3	2322	genome.wustl.edu	37	13	28608477	28608477	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004119.2	-1	reviewed	p.I555	0.546	171	0%	119	38.7%	0	-	-	-	-	NULL
MTUS2	23281	genome.wustl.edu	37	13	29599559	29599559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.R252C	0.000	58	0%	60	51.7%	0	-	benign(0.007)	tolerated(0.16)	neutral(0.059)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31719803	31719803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006644.2	-1	validated	p.T494M	0.993	301	0%	218	15.1%	63	19%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
TRPC4	7223	genome.wustl.edu	37	13	38320455	38320455	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.H172	0.830	89	0%	69	39.1%	0	-	-	-	-	NULL
FOXO1	2308	genome.wustl.edu	37	13	41134954	41134954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002015.3	-1	reviewed	p.R225H	1.000	109	0%	88	19.3%	11	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
EPSTI1	94240	genome.wustl.edu	37	13	43500494	43500494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002264.1	-1	validated	p.C212Y	0.000	282	0%	232	43.1%	1	0%	benign(0.158)	tolerated(0.17)	neutral(0.073)	NULL
ENOX1	55068	genome.wustl.edu	37	13	43896621	43896621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127615.1	-1	validated	p.Q387R	1.000	284	0%	216	48.6%	0	-	benign(0.032)	tolerated(0.24)	neutral(0.039)	NULL
CCDC122	160857	genome.wustl.edu	37	13	44433853	44433853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144974.3	-1	validated	p.M170I	0.047	381	0.8%	285	47.7%	6	50%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
CPB2	1361	genome.wustl.edu	37	13	46658462	46658462	+	Missense_Mutation	SNP	G	G	A	rs186705993	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001872.3	-1	reviewed	p.P56L	1.000	214	0.5%	141	44%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
RCBTB1	55213	genome.wustl.edu	37	13	50125487	50125487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018191.3	-1	reviewed	p.A277T	0.292	249	0%	179	47.5%	22	31.8%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
ATP7B	540	genome.wustl.edu	37	13	52549277	52549277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000053.2	-1	reviewed	p.R27C	0.001	152	0%	137	48.2%	2	100%	possibly_damaging(0.656)	deleterious(0)	deleterious(0.675)	NULL
NEK5	341676	genome.wustl.edu	37	13	52686429	52686429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199289.1	-1	provisional	p.R96Q	0.089	363	0%	256	46.9%	0	-	probably_damaging(0.99)	tolerated(0.24)	deleterious(0.479)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CKAP2	26586	genome.wustl.edu	37	13	53035753	53035753	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098525.1	+1	validated	p.R265	0.002	163	0%	145	17.2%	31	16.1%	-	-	-	NULL
PCDH8	5100	genome.wustl.edu	37	13	53422332	53422332	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002590.2	-1	reviewed	p.D80	1.000	42	0%	12	50%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
DACH1	1602	genome.wustl.edu	37	13	72204836	72204836	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080759.4	-1	reviewed	p.A326	1.000	167	0%	146	52.7%	0	-	-	-	-	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75930296	75930296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014832.2	-1	validated	p.A421V	1.000	108	0%	89	42.7%	6	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88328572	88328572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015567.1	+1	validated	p.P310L	0.998	26	0%	24	25%	17	11.7%	benign(0.152)	deleterious(0)	neutral(0.458)	NULL
DOCK9	23348	genome.wustl.edu	37	13	99446889	99446889	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400228	-1	known	p.G667S	0.000	105	0%	69	46.4%	24	45.8%	-	-	-	NULL
DOCK9	23348	genome.wustl.edu	37	13	99498279	99498279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400224	-1	known	p.R54Q	1.000	259	0%	199	46.2%	4	75%	probably_damaging(0.994)	tolerated(0.15)	deleterious(0.693)	NULL
TPP2	7174	genome.wustl.edu	37	13	103257238	103257238	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.G87	0.767	372	0%	212	40.1%	11	54.5%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
TPP2	7174	genome.wustl.edu	37	13	103298646	103298646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.P799L	1.000	214	0%	164	48.2%	31	41.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TPP2	7174	genome.wustl.edu	37	13	103317180	103317180	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.A1079	0.986	198	0%	129	36.4%	34	44.1%	-	-	-	NULL
DAOA	267012	genome.wustl.edu	37	13	106142150	106142150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454325	+1	known	p.T33I	0.000	158	0%	147	42.2%	0	-	-	-	-	NULL
F10	2159	genome.wustl.edu	37	13	113783880	113783880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000504.3	+1	reviewed	p.C62Y	0.997	116	0%	90	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gla,HMMSmart_SM00069,PatternScan_GLA_1,superfamily_GLA-domain
CUL4A	8451	genome.wustl.edu	37	13	113887602	113887602	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008895.1	+1	validated	p.A208	0.038	101	0%	88	17%	67	19.4%	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
TMCO3	55002	genome.wustl.edu	37	13	114150081	114150081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017905.4	+1	validated	p.R62H	0.958	95	0%	50	48%	12	41.6%	benign(0.083)	deleterious(0.01)	neutral(0.412)	NULL
ATP4B	496	genome.wustl.edu	37	13	114309166	114309166	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000705.3	-1	reviewed	p.P68	0.101	143	0%	94	46.8%	0	-	-	-	-	HMMPfam_Na_K-ATPase
SALL2	6297	genome.wustl.edu	37	14	21991702	21991702	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.N720	0.751	93	0%	73	41.1%	13	38.4%	unknown(0)	-	-	NULL
SALL2	6297	genome.wustl.edu	37	14	21991838	21991838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.R675H	0.980	77	0%	51	33.3%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RBM23	55147	genome.wustl.edu	37	14	23375503	23375503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077351.1	-1	reviewed	p.R101H	0.997	93	0%	81	59.3%	63	46%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
SLC22A17	51310	genome.wustl.edu	37	14	23817481	23817481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397263	-1	known	p.A201V	1.000	87	0%	57	49.1%	0	-	-	-	-	NULL
IL25	64806	genome.wustl.edu	37	14	23844844	23844844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022789.3	+1	reviewed	p.D97Y	1.000	68	0%	46	32.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_IL17,superfamily_Cystine-knot cytokines
MYH7	4625	genome.wustl.edu	37	14	23884476	23884476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.A1763T	1.000	231	0%	151	53%	0	-	benign(0.33)	tolerated(0.07)	neutral(0.422)	HMMPfam_Myosin_tail_1
PSME2	5721	genome.wustl.edu	37	14	24612871	24612871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002818.2	-1	reviewed	p.R188W	1.000	178	0%	114	51.8%	242	47.1%	benign(0.1)	deleterious(0.03)	neutral(0.372)	HMMPfam_PA28_beta,superfamily_Prot_act_regA
RNF31	55072	genome.wustl.edu	37	14	24620062	24620062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.R485W	1.000	55	1.8%	50	56%	30	56.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRF9	10379	genome.wustl.edu	37	14	24633981	24633981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006084.4	+1	validated	p.R270C	0.864	43	0%	27	63%	90	48.8%	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	superfamily_SMAD_FHA,HMMPfam_IRF-3
TINF2	26277	genome.wustl.edu	37	14	24711189	24711189	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099274.1	-1	reviewed	p.E68	0.839	104	0%	63	41.3%	29	55.1%	-	-	-	NULL
RABGGTA	5875	genome.wustl.edu	37	14	24738314	24738314	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004581.3	-1	validated	p.W229*	1.000	365	0%	255	45.5%	22	22.7%	-	-	-	HMMPfam_PPTA,superfamily_Prenyl_trans
RPL36AL	6166	genome.wustl.edu	37	14	50085653	50085653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001.3	-1	reviewed	p.R57Q	1.000	138	0.7%	104	44.2%	497	43.8%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Ribosomal_L44,superfamily_Ribosomal_zn-bd
ATL1	51062	genome.wustl.edu	37	14	51094836	51094836	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015915.4	+1	reviewed	p.R403*	1.000	300	0%	245	12.2%	6	33.3%	-	-	-	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
TRIM9	114088	genome.wustl.edu	37	14	51467459	51467459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.T469M	0.365	141	0%	113	48.7%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FBXO34	55030	genome.wustl.edu	37	14	55818336	55818336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017943.3	+1	validated	p.E410K	0.969	162	0%	129	46.5%	33	36.3%	possibly_damaging(0.907)	tolerated(0.15)	deleterious(0.601)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58605624	58605624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.A151	0.000	92	0%	84	45.2%	2	100%	-	-	-	NULL
GPHB5	122876	genome.wustl.edu	37	14	63779733	63779733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314140	-1	known	p.P100L	1.000	240	0%	200	50.5%	0	-	-	-	-	HMMSmart_SM00068,HMMPfam_Cys_knot,superfamily_Cystine-knot cytokines
SYNE2	23224	genome.wustl.edu	37	14	64692053	64692053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.R6845W	0.001	28	0%	21	42.9%	40	40%	unknown(0)	-	-	NULL
ZBTB1	22890	genome.wustl.edu	37	14	64990104	64990104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123329.1	+1	validated	p.H628Y	1.000	162	0%	145	13.1%	44	6.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAX	4149	genome.wustl.edu	37	14	65568337	65568337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441116	-1	known	p.K5E	1.000	29	0%	26	50%	0	-	unknown(0)	-	-	NULL
RDH12	145226	genome.wustl.edu	37	14	68200555	68200555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152443.2	+1	reviewed	p.R314Q	1.000	116	0%	60	53.3%	1	0%	benign(0.001)	tolerated(0.42)	neutral(0.014)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68265084	68265084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.R632Q	0.000	150	0%	102	44.1%	2	0%	benign(0.018)	tolerated(0.52)	neutral(0.009)	NULL
DCAF5	8816	genome.wustl.edu	37	14	69619523	69619523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003861.2	-1	validated	p.A58V	1.000	65	0%	43	37.2%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZFYVE1	53349	genome.wustl.edu	37	14	73437703	73437703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021260.1	-1	reviewed	p.G741R	1.000	70	0%	56	51.8%	13	76.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
TMED10	10972	genome.wustl.edu	37	14	75643278	75643278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006827.5	-1	reviewed	p.S2F	1.000	42	0%	54	37%	155	36.7%	unknown(0)	deleterious(0)	-	NULL
ISM2	145501	genome.wustl.edu	37	14	77948807	77948807	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199296.2	-1	reviewed	p.S277	0.029	491	0%	394	44.4%	0	-	-	-	-	NULL
ALKBH1	8846	genome.wustl.edu	37	14	78142127	78142127	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006020.2	-1	reviewed	p.A204	0.080	210	0%	135	48.1%	11	36.3%	-	-	-	NULL
DIO2	1734	genome.wustl.edu	37	14	80669200	80669200	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007023.2	-1	reviewed	p.N254	0.999	141	0%	88	37.5%	2	50%	-	-	-	HMMPfam_T4_deiodinase
FLRT2	23768	genome.wustl.edu	37	14	86088573	86088573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013231.4	+1	reviewed	p.R239C	0.997	69	0%	60	50%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
ZC3H14	79882	genome.wustl.edu	37	14	89061406	89061406	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207662.3	+1	validated	p.S112	0.987	84	0%	78	47.4%	0	-	-	-	-	NULL
C14orf49	161176	genome.wustl.edu	37	14	95905457	95905457	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152592.3	-1	validated	p.S763	0.000	203	0%	134	43.3%	0	-	-	-	-	NULL
C14orf49	161176	genome.wustl.edu	37	14	95918710	95918710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152592.3	-1	validated	p.A383V	0.000	80	0%	40	40%	0	-	benign(0.248)	tolerated(0.1)	neutral(0.311)	NULL
BCL11B	64919	genome.wustl.edu	37	14	99642348	99642348	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138576.2	-1	reviewed	p.A275	0.998	21	0%	11	54.5%	0	-	-	-	-	NULL
CCNK	8812	genome.wustl.edu	37	14	99959123	99959123	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099402.1	+1	reviewed	p.Q37*	0.957	115	0%	96	49%	52	53.8%	-	-	-	superfamily_Cyclin-like
WARS	7453	genome.wustl.edu	37	14	100820897	100820897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004184.3	-1	reviewed	p.M143I	1.000	84	0%	65	24.6%	153	20.9%	benign(0.008)	tolerated(0.07)	neutral(0.319)	superfamily_Nucleotidylyl transferase
BEGAIN	57596	genome.wustl.edu	37	14	101005566	101005566	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020836.3	-1	validated	p.Y174	0.967	31	0%	25	52%	1	100%	-	-	-	NULL
RTL1	388015	genome.wustl.edu	37	14	101347456	101347456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.V1224I	0.987	30	0%	34	47.1%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102510224	102510224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R4176C	1.000	138	0%	100	47%	329	50.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
TECPR2	9895	genome.wustl.edu	37	14	102918873	102918873	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.A1183	0.063	5	0.000	12	0.667	12	25%	-	-	-	HMMPfam_Hyd_WA,HMMSmart_TECPR
KIAA0284	283638	genome.wustl.edu	37	14	105356024	105356024	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112726.1	+1	validated	p.T1269	0.944	101	0%	54	50%	61	52.4%	-	-	-	NULL
KIAA0284	283638	genome.wustl.edu	37	14	105359982	105359982	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112726.1	+1	validated	p.T1387	0.002	24	0%	21	57.1%	78	53.8%	-	-	-	NULL
NUDT14	256281	genome.wustl.edu	37	14	105644038	105644038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177533.3	-1	validated	p.T39M	0.997	94	0%	64	40.6%	38	50%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
ENSG00000215407	0	genome.wustl.edu	37	15	20450277	20450277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.R349W	0.913	154	0%	135	15.6%	10	0%	-	-	-	HMMPfam_BRO1
LOC642131	642131	genome.wustl.edu	37	15	22472820	22472820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716834.1	-1	model	p.R158W	0.001	58	0%	48	35.4%	0	-	-	-	-	NULL
GOLGA8E	390535	genome.wustl.edu	37	15	23443503	23443503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450934	+1	known	p.R201C	0.013	467	0%	319	41.7%	0	-	-	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25924908	25924908	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.P1360	0.001	33	0%	23	52.2%	2	50%	-	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25959081	25959081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.A695V	1.000	25	0%	25	56%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56784
ENSG00000221138	0	genome.wustl.edu	37	15	33256249	33256249	+	RNA	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408211	-1	novel	NULL	0.013	225	0.4%	135	37.8%	0	-	-	-	-	-
RYR3	6263	genome.wustl.edu	37	15	33926871	33926871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.R1038W	0.989	318	0%	214	50%	0	-	probably_damaging(1)	-	-	HMMPfam_RyR
RYR3	6263	genome.wustl.edu	37	15	33954940	33954940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.V1737M	0.999	432	0%	329	46.5%	0	-	probably_damaging(0.99)	-	-	NULL
C15orf41	84529	genome.wustl.edu	37	15	36950061	36950061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130010.1	+1	validated	p.R101W	1.000	268	0%	207	50.7%	3	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
FAM98B	283742	genome.wustl.edu	37	15	38776701	38776701	+	Silent	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173611.2	+1	validated	p.G381	0.002	85	0%	45	48.9%	1	100%	-	-	-	NULL
THBS1	7057	genome.wustl.edu	37	15	39874866	39874866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003246.2	+1	reviewed	p.D180	0.019	22	0%	26	53.8%	7	28.5%	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
EIF2AK4	440275	genome.wustl.edu	37	15	40259646	40259646	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013703.2	+1	validated	p.I373	0.011	145	0%	89	46.1%	20	45%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BAHD1	22893	genome.wustl.edu	37	15	40751595	40751595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014952.3	+1	validated	p.R311H	0.293	30	0%	18	61.1%	23	47.8%	possibly_damaging(0.597)	deleterious(0)	deleterious(0.651)	NULL
LOC100288995	100288995	genome.wustl.edu	37	15	41222926	41222926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343338.1	-1	model	p.A443V	0.966	69	0%	62	48.4%	0	-	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	41988691	41988691	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.R495*	0.974	77	0%	52	51.9%	6	66.6%	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42003134	42003134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.V891I	0.913	153	0%	143	23.1%	3	66.6%	benign(0.368)	deleterious(0)	deleterious(0.561)	NULL
JMJD7	100137047	genome.wustl.edu	37	15	42129054	42129054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114632.1	+1	validated	p.R260C	0.607	47	0%	36	58.3%	38	28.9%	benign(0.002)	deleterious(0)	neutral(0.445)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
SPTBN5	51332	genome.wustl.edu	37	15	42165718	42165718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.A1625V	0.780	189	0%	115	53%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
VPS39	23339	genome.wustl.edu	37	15	42479524	42479524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015289.2	-1	reviewed	p.A160V	1.000	305	0%	159	38.4%	13	38.4%	benign(0.018)	tolerated(0.2)	neutral(0.050)	HMMPfam_CNH
STARD9	57519	genome.wustl.edu	37	15	42978184	42978184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.A1384T	0.976	88	0%	69	50.7%	0	-	benign(0.358)	-	-	NULL
CDAN1	146059	genome.wustl.edu	37	15	43017735	43017735	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138477.2	-1	reviewed	p.L1134	0.997	34	0%	27	63%	17	35.2%	-	-	-	NULL
EPB42	2038	genome.wustl.edu	37	15	43498575	43498575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000119.2	-1	reviewed	p.A554V	0.128	177	0.6%	128	21.9%	0	-	probably_damaging(0.953)	tolerated(0.53)	neutral(0.404)	HMMPfam_Transglut_C,superfamily_Transglut_C
TGM7	116179	genome.wustl.edu	37	15	43579540	43579540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052955.2	-1	validated	p.A268V	0.394	58	0%	45	40%	0	-	possibly_damaging(0.95)	tolerated(0.12)	deleterious(0.654)	superfamily_SSF54001
TP53BP1	7158	genome.wustl.edu	37	15	43701225	43701225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141980.1	-1	validated	p.L1824F	1.000	220	0%	161	41%	64	65.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
FRMD5	84978	genome.wustl.edu	37	15	44180392	44180392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032892.3	-1	validated	p.E289K	1.000	327	0%	272	51.8%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FERM_C,superfamily_PH domain-like
CASC4	113201	genome.wustl.edu	37	15	44705545	44705545	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138423.2	+1	reviewed	p.R418*	1.000	138	0%	95	45.3%	47	29.7%	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44867134	44867134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.C1991Y	1.000	240	0%	160	46.3%	41	51.2%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
C15orf33	196951	genome.wustl.edu	37	15	49620867	49620867	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152647.2	-1	validated	p.S475	0.010	230	0%	226	42.9%	1	0%	-	-	-	NULL
TRPM7	54822	genome.wustl.edu	37	15	50926583	50926585	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017672.4	-1	reviewed	p.E334in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TRPM7	54822	genome.wustl.edu	37	15	50931740	50931740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017672.4	-1	reviewed	p.A181T	1.000	278	0%	199	44.7%	7	57.1%	probably_damaging(1)	tolerated(0.53)	deleterious(0.507)	NULL
WDR72	256764	genome.wustl.edu	37	15	53907651	53907651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.P918S	1.000	52	0%	17	23.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALDH1A2	8854	genome.wustl.edu	37	15	58306108	58306108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003888.2	-1	reviewed	p.R104H	0.282	203	0%	162	40.7%	0	-	possibly_damaging(0.837)	tolerated(0.06)	deleterious(0.642)	HMMPfam_Aldedh,superfamily_ALDH-like
SLTM	79811	genome.wustl.edu	37	15	59180686	59180686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024755.2	-1	validated	p.G758E	1.000	327	0%	245	45.7%	70	54.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
HERC1	8925	genome.wustl.edu	37	15	63921015	63921015	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	e69-1	1.000	172	0%	107	12.1%	0	-	-	-	-	-
HERC1	8925	genome.wustl.edu	37	15	63982784	63982784	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.L1965	0.955	98	0%	56	46.4%	3	100%	-	-	-	NULL
ZNF609	23060	genome.wustl.edu	37	15	64792055	64792055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015042.1	+1	provisional	p.A146V	0.996	173	0%	152	53.9%	5	0%	benign(0.042)	deleterious(0.02)	neutral(0.386)	NULL
ZNF609	23060	genome.wustl.edu	37	15	64968078	64968078	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015042.1	+1	provisional	p.Q1009*	1.000	199	0%	142	46.5%	10	20%	-	-	-	NULL
RBPMS2	348093	genome.wustl.edu	37	15	65041232	65041232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194272.1	-1	provisional	p.A129T	0.941	490	0%	320	41.9%	15	20%	benign(0.003)	tolerated(0.24)	neutral(0.037)	NULL
PIF1	80119	genome.wustl.edu	37	15	65113607	65113607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025049.2	-1	validated	p.M310I	1.000	62	0%	44	50%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LCTL	197021	genome.wustl.edu	37	15	66853342	66853342	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207338.2	-1	validated	e6+2	1.000	65	0%	52	55.8%	0	-	-	-	-	-
IQCH	64799	genome.wustl.edu	37	15	67664608	67664608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031715.2	+1	validated	p.V305I	0.001	309	0%	232	45.7%	3	33.3%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
PAQR5	54852	genome.wustl.edu	37	15	69682074	69682074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104554.1	+1	validated	p.A156V	1.000	115	0%	104	43.3%	0	-	benign(0.293)	deleterious(0.02)	deleterious(0.474)	HMMPfam_HlyIII
THSD4	79875	genome.wustl.edu	37	15	72023520	72023520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024817.2	+1	provisional	p.A532T	0.921	114	0%	99	34.3%	1	100%	benign(0.005)	tolerated(0.37)	neutral(0.019)	NULL
GRAMD2	196996	genome.wustl.edu	37	15	72462232	72462232	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012642.2	-1	validated	p.S30	0.000	406	0%	286	55.2%	0	-	-	-	-	NULL
LOC100287646	100287646	genome.wustl.edu	37	15	74315550	74315550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343353.1	-1	model	p.R113C	0.000	10	0%	10	70%	44	47.7%	-	-	-	NULL
CLK3	1198	genome.wustl.edu	37	15	74919993	74919993	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130028.1	+1	reviewed	p.P490	0.172	137	0%	102	15.7%	42	14.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CSK	1445	genome.wustl.edu	37	15	75090958	75090958	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127190.1	+1	validated	p.A6	0.982	17	0%	13	30.8%	119	43.6%	-	-	-	NULL
SIN3A	25942	genome.wustl.edu	37	15	75684744	75684744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.R897Q	1.000	307	0%	237	48.5%	32	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SIN3A	25942	genome.wustl.edu	37	15	75685065	75685065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.A790V	1.000	226	0%	181	47%	50	56%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
LINGO1	84894	genome.wustl.edu	37	15	77906661	77906661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032808.5	-1	validated	p.A530T	1.000	178	0%	109	46.8%	1	0%	possibly_damaging(0.659)	tolerated(0.86)	neutral(0.233)	NULL
IREB2	3658	genome.wustl.edu	37	15	78786397	78786397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004136.2	+1	validated	p.T824M	1.000	122	0%	94	45.7%	26	50%	probably_damaging(0.985)	tolerated(0.09)	deleterious(0.728)	HMMPfam_Aconitase_C,superfamily_Aconitase
PSMA4	5685	genome.wustl.edu	37	15	78841246	78841246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102667.1	+1	validated	p.R249H	0.995	180	0%	158	44.9%	262	43.1%	unknown(0)	tolerated(0.11)	-	NULL
ANKRD34C	390616	genome.wustl.edu	37	15	79585779	79585779	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343327.1	+1	model	p.A51	0.346	204	0%	177	45.2%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
AP3B2	8120	genome.wustl.edu	37	15	83346515	83346515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004644.3	-1	validated	p.T429I	0.998	75	0%	67	29.9%	2	50%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
FSD2	123722	genome.wustl.edu	37	15	83455654	83455654	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007122.2	-1	provisional	p.C163W	0.999	165	0%	130	44.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOC727963	727963	genome.wustl.edu	37	15	84748624	84748624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343381.1	+1	model	p.A10V	0.001	17	0%	21	61.9%	0	-	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85403056	85403056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.V1541I	0.001	24	0%	21	66.7%	1	100%	benign(0.365)	deleterious(0.03)	deleterious(0.480)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
KLHL25	64410	genome.wustl.edu	37	15	86311930	86311930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022480.3	-1	validated	p.A371V	0.995	27	0%	20	60%	3	66.6%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
RHCG	51458	genome.wustl.edu	37	15	90026303	90026303	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016321.1	-1	provisional	p.L173	0.510	96	0%	47	55.3%	0	-	-	-	-	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
WDR93	56964	genome.wustl.edu	37	15	90286572	90286572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020212.1	+1	provisional	p.R671W	0.338	113	0%	63	42.9%	2	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
C15orf38	348110	genome.wustl.edu	37	15	90451599	90451599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182616.2	-1	validated	p.R72C	0.997	250	0%	162	48.1%	46	36.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0552
MAN2A2	4122	genome.wustl.edu	37	15	91455311	91455311	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006122.2	+1	validated	p.G716	0.386	41	2.4%	22	54.5%	36	36.1%	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
LOC100131297	100131297	genome.wustl.edu	37	15	91575038	91575038	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343384.1	-1	model	e3-1	0.825	11	0%	10	60%	0	-	-	-	-	-
IGF1R	3480	genome.wustl.edu	37	15	99478204	99478204	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000875.3	+1	reviewed	p.N1036	0.990	355	0%	258	47.7%	45	46.6%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
IGF1R	3480	genome.wustl.edu	37	15	99500432	99500432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000875.3	+1	reviewed	p.E1289K	1.000	90	0%	59	42.4%	58	55.1%	benign(0.051)	tolerated(0.11)	neutral(0.275)	NULL
PGPEP1L	145814	genome.wustl.edu	37	15	99512702	99512702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102612.2	-1	validated	p.R108H	0.000	74	0%	54	31.5%	0	-	possibly_damaging(0.789)	tolerated(0.27)	neutral(0.330)	superfamily_Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
SYNM	23336	genome.wustl.edu	37	15	99672618	99672618	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145728.2	+1	reviewed	p.C1351Y	0.000	87	0%	64	46.9%	0	-	-	-	-	NULL
ENSG00000214394	0	genome.wustl.edu	37	15	100332812	100332812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398270	+1	known	p.C114R	1.000	115	0%	62	48.4%	0	-	-	-	-	NULL
ALDH1A3	220	genome.wustl.edu	37	15	101427864	101427864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000693.2	+1	reviewed	p.R98W	0.576	26	0%	22	36.4%	0	-	benign(0.058)	deleterious(0.04)	neutral(0.352)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
LRRK1	79705	genome.wustl.edu	37	15	101606097	101606097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.M1819V	1.000	96	0%	71	15.5%	9	33.3%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CHSY1	22856	genome.wustl.edu	37	15	101775565	101775565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000254190	-1	known	p.R180C	0.948	129	0%	60	38.3%	25	52%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
RHBDF1	64285	genome.wustl.edu	37	16	111823	111823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022450.3	-1	validated	p.R394H	1.000	63	0%	38	47.4%	35	42.8%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
RHBDF1	64285	genome.wustl.edu	37	16	113635	113635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022450.3	-1	validated	p.E138K	1.000	59	0%	39	46.2%	34	35.2%	possibly_damaging(0.928)	deleterious(0.02)	deleterious(0.758)	NULL
ARHGDIG	398	genome.wustl.edu	37	16	332337	332337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001176.3	+1	validated	p.K126N	1.000	135	0%	88	44.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rho_GDI,superfamily_Ig_E-set
DECR2	26063	genome.wustl.edu	37	16	457490	457490	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429116	+1	known	p.A22T	0.007	121	0%	87	44.8%	29	55.1%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
C16orf11	146325	genome.wustl.edu	37	16	615240	615240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145270.1	+1	predicted	p.A550V	0.000	12	0.000	9	0.444	1	100%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
C16orf11	146325	genome.wustl.edu	37	16	618031	618031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000293874	+1	known	p.P743L	0.000	59	0%	35	40%	1	100%	-	-	-	superfamily_NHL repeat
ENSG00000245986	0	genome.wustl.edu	37	16	785008	785008	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502230	+1	known	NULL	0.000	12	0%	11	63.6%	0	-	-	-	-	-
BAIAP3	8938	genome.wustl.edu	37	16	1397753	1397753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003933.3	+1	reviewed	p.E1021K	1.000	25	0%	16	50%	3	33.3%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CLCN7	1186	genome.wustl.edu	37	16	1506160	1506160	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001287.4	-1	reviewed	p.S290	0.021	20	0%	16	31.2%	36	52.7%	-	-	-	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
CRAMP1L	57585	genome.wustl.edu	37	16	1718027	1718027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020825.3	+1	validated	p.P1056L	0.987	142	0%	92	48.9%	14	57.1%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
C16orf73	254528	genome.wustl.edu	37	16	1894913	1894913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152764.2	-1	validated	p.T277M	0.385	175	0%	116	43.1%	0	-	benign(0.019)	tolerated(0.11)	neutral(0.273)	superfamily_Nucleic_acid_OB
MSRB1	51734	genome.wustl.edu	37	16	1990821	1990821	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016332.2	-1	reviewed	p.R93*	0.998	81	0%	58	37.9%	41	43.9%	-	-	-	HMMPfam_SelR,superfamily_Mss4-like
RNF151	146310	genome.wustl.edu	37	16	2018738	2018738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174903.4	+1	provisional	p.R184W	0.011	11	0%	12	58.3%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	superfamily_Traf_like
TBL3	10607	genome.wustl.edu	37	16	2024810	2024810	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006453.2	+1	reviewed	p.Y142	0.781	65	0%	39	17.9%	106	16%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PKD1	5310	genome.wustl.edu	37	16	2168071	2168071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009944.2	-1	reviewed	p.G308R	0.974	23	0%	13	30.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain
TRAF7	84231	genome.wustl.edu	37	16	2222300	2222300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032271.2	+1	validated	p.A195V	0.000	30	0%	27	51.9%	99	58.5%	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_TRAF domain-like,superfamily_RING/U-box
C16orf59	80178	genome.wustl.edu	37	16	2511057	2511057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025108.2	+1	validated	p.T146M	0.000	44	0%	30	46.7%	15	73.3%	probably_damaging(0.969)	tolerated(0.09)	deleterious(0.708)	NULL
C16orf59	80178	genome.wustl.edu	37	16	2511087	2511087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025108.2	+1	validated	p.R156Q	0.000	41	0%	25	32%	13	23%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
PRSS21	10942	genome.wustl.edu	37	16	2867870	2867870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006799.2	+1	reviewed	p.P54S	1.000	20	0%	14	35.7%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
OR2C1	4993	genome.wustl.edu	37	16	3406466	3406466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012368.2	+1	validated	p.G176R	0.889	87	0%	57	38.6%	0	-	benign(0.299)	deleterious(0)	deleterious(0.537)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLX4	84464	genome.wustl.edu	37	16	3639255	3639255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.A1462T	0.000	38	0%	34	55.9%	5	80%	benign(0.355)	tolerated(0.5)	neutral(0.122)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3828110	3828110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.R672H	1.000	175	0%	122	52.5%	25	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPL	5493	genome.wustl.edu	37	16	4935120	4935120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.R1179Q	1.000	166	0%	107	10.3%	68	16.1%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	NULL
PPL	5493	genome.wustl.edu	37	16	4943353	4943353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.G504E	1.000	30	0%	20	50%	30	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SEC14L5	9717	genome.wustl.edu	37	16	5055945	5055945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014692.1	+1	validated	p.R445W	1.000	140	0.7%	118	44.1%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
CLEC16A	23274	genome.wustl.edu	37	16	11136200	11136200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015226.2	+1	validated	p.V584M	1.000	73	0%	38	57.9%	19	52.6%	benign(0.422)	tolerated(0.1)	neutral(0.423)	PatternScan_C_TYPE_LECTIN_1
LITAF	9516	genome.wustl.edu	37	16	11643568	11643568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381810	-1	known	p.R138C	0.316	67	0%	59	57.6%	63	47.6%	benign(0.023)	tolerated(0.08)	neutral(0.301)	NULL
NOMO1	23420	genome.wustl.edu	37	16	14976505	14976505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.R1028W	1.000	288	0%	199	30.7%	94	20.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Carboxypeptidase regulatory domain
MYH11	4629	genome.wustl.edu	37	16	15835445	15835445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.R919W	1.000	114	0%	71	45.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYH11	4629	genome.wustl.edu	37	16	15841973	15841973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.V711A	1.000	44	0%	34	55.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ABCC6	368	genome.wustl.edu	37	16	16313417	16313417	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001171.5	-1	reviewed	p.S156	0.000	120	0%	78	47.4%	0	-	-	-	-	NULL
SMG1	23049	genome.wustl.edu	37	16	18828693	18828693	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.R3332*	1.000	194	0%	138	49.3%	17	29.4%	-	-	-	NULL
SMG1	23049	genome.wustl.edu	37	16	18846251	18846251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.A2765T	1.000	229	0%	165	23.6%	10	30%	probably_damaging(0.957)	tolerated(0.37)	neutral(0.420)	NULL
UMOD	7369	genome.wustl.edu	37	16	20352615	20352615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008389.1	-1	reviewed	p.R459W	0.966	114	0%	78	39.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
DNAH3	55567	genome.wustl.edu	37	16	21053361	21053361	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.P1542	0.867	187	0%	132	48.5%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHP2	63928	genome.wustl.edu	37	16	23767433	23767433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022097.2	+1	provisional	p.R91C	1.000	182	0%	142	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_EF-hand
PRKCB	5579	genome.wustl.edu	37	16	24166145	24166145	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002738.6	+1	reviewed	p.F402	1.000	162	0%	119	49.6%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TNRC6A	27327	genome.wustl.edu	37	16	24788637	24788637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.P183S	1.000	149	0%	104	30.8%	8	75%	possibly_damaging(0.833)	tolerated(0.25)	neutral(0.354)	NULL
ZKSCAN2	342357	genome.wustl.edu	37	16	25251797	25251797	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012981.4	-1	validated	p.Y748	0.226	181	0%	107	43%	3	66.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NSMCE1	197370	genome.wustl.edu	37	16	27268779	27268779	+	Missense_Mutation	SNP	G	G	A	rs7195194	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145080.3	-1	validated	p.T38M	0.898	86	0%	46	47.8%	133	43.6%	benign(0.371)	deleterious(0.03)	deleterious(0.482)	HMMPfam_SMC_Nse1
GTF3C1	2975	genome.wustl.edu	37	16	27506763	27506763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.R801W	0.996	68	0%	48	52.1%	28	53.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27709761	27709761	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.N351	0.111	23	0%	15	73.3%	3	100%	-	-	-	NULL
GSG1L	146395	genome.wustl.edu	37	16	27895832	27895832	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109763.1	-1	validated	p.F175	0.983	157	0%	129	38%	0	-	-	-	-	NULL
APOBR	55911	genome.wustl.edu	37	16	28507978	28507978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018690.2	+1	reviewed	p.A530V	0.001	24	0%	22	36.4%	2	0%	possibly_damaging(0.922)	tolerated(0.13)	deleterious(0.624)	NULL
ATP2A1	487	genome.wustl.edu	37	16	28895953	28895953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173201.2	+1	reviewed	p.R174Q	1.000	91	0%	53	39.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP2A1	487	genome.wustl.edu	37	16	28913518	28913518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173201.2	+1	reviewed	p.A779T	1.000	90	0%	58	48.3%	2	50%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_Calcium ATPase transmembrane domain M
CDIPT	10423	genome.wustl.edu	37	16	29873949	29873949	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006319.3	-1	validated	p.L46	0.971	161	0%	107	49.5%	103	40.7%	-	-	-	HMMPfam_CDP-OH_P_transf
ASPHD1	253982	genome.wustl.edu	37	16	29912388	29912388	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181718.3	+1	validated	p.A32	0.001	271	0%	201	45.3%	0	-	-	-	-	NULL
HIRIP3	8479	genome.wustl.edu	37	16	30005349	30005349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003609.2	-1	reviewed	p.E373K	0.006	205	0%	140	41.4%	19	73.6%	possibly_damaging(0.936)	tolerated(0.27)	neutral(0.415)	NULL
INO80E	283899	genome.wustl.edu	37	16	30012264	30012264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173618.1	+1	provisional	p.P100L	0.957	45	0%	36	44.4%	65	44.6%	possibly_damaging(0.774)	deleterious(0.02)	deleterious(0.671)	NULL
TBX6	6911	genome.wustl.edu	37	16	30102201	30102201	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004608.3	-1	reviewed	p.P77	0.000	106	0%	93	33.3%	1	0%	-	-	-	NULL
ITGAL	3683	genome.wustl.edu	37	16	30495249	30495249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002209.2	+1	reviewed	p.A275V	0.000	74	0%	41	56.1%	2	0%	benign(0.023)	tolerated(0.29)	neutral(0.030)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
SRCAP	10847	genome.wustl.edu	37	16	30740311	30740311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.R1895W	0.824	84	0%	52	51.9%	28	50%	unknown(0)	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30780579	30780579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.R774W	1.000	271	0%	180	39.4%	104	45.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARMC5	79798	genome.wustl.edu	37	16	31477235	31477235	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105247.1	+1	validated	p.T643	0.448	87	0%	78	14.1%	14	0%	-	-	-	superfamily_ARM repeat
SNX20	124460	genome.wustl.edu	37	16	50707444	50707444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182854.2	-1	validated	p.R275H	0.970	6	0.000	8	0.625	1	0%	benign(0.091)	tolerated(0.21)	neutral(0.050)	NULL
BBS2	583	genome.wustl.edu	37	16	56540102	56540102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031885.3	-1	reviewed	p.R216Q	1.000	137	0%	98	19.4%	39	15.3%	possibly_damaging(0.933)	tolerated(0.25)	neutral(0.416)	superfamily_WD40 repeat-like
NLRC5	84166	genome.wustl.edu	37	16	57063977	57063977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.V800I	0.000	164	0%	115	51.3%	17	23.5%	benign(0.022)	tolerated(0.37)	neutral(0.020)	superfamily_RNI-like
NLRC5	84166	genome.wustl.edu	37	16	57067575	57067575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.T846M	0.001	251	0%	189	47.1%	12	33.3%	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	superfamily_RNI-like
RSPRY1	89970	genome.wustl.edu	37	16	57238814	57238814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133368.1	+1	provisional	p.R82W	0.998	176	0%	143	39.2%	33	30.3%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
CNGB1	1258	genome.wustl.edu	37	16	57931439	57931439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001297.4	-1	reviewed	p.A1035V	1.000	46	0%	41	58.5%	0	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_cNMP_binding,HMMSmart_SM00100,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like
CDH11	1009	genome.wustl.edu	37	16	65032562	65032562	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.P142	0.000	202	0%	143	44.8%	6	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CES4A	283848	genome.wustl.edu	37	16	67034660	67034660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173815.4	+1	validated	p.A127V	0.000	12	0%	11	36.4%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_COesterase,superfamily_SSF53474
HSF4	3299	genome.wustl.edu	37	16	67199862	67199862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040667.2	+1	reviewed	p.R125H	0.969	3	0.000	6	0.667	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_HSF_DNA-bind
ELMO3	79767	genome.wustl.edu	37	16	67237673	67237673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024712.3	+1	reviewed	p.R739C	1.000	40	0%	21	52.4%	38	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTRL	1506	genome.wustl.edu	37	16	67964349	67964349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001907.1	-1	provisional	p.T154M	0.001	272	0%	188	45.2%	3	100%	possibly_damaging(0.851)	tolerated(0.25)	neutral(0.364)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PLA2G15	23659	genome.wustl.edu	37	16	68289850	68289850	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012320.3	+1	reviewed	p.A228	0.162	38	0%	38	34.2%	9	11.1%	-	-	-	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases
HAS3	3038	genome.wustl.edu	37	16	69143517	69143517	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005329.2	+1	reviewed	p.A73	0.000	53	0%	33	42.4%	0	-	-	-	-	NULL
HAS3	3038	genome.wustl.edu	37	16	69143728	69143728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005329.2	+1	reviewed	p.E144K	1.000	64	0%	48	56.2%	0	-	benign(0.02)	deleterious(0.02)	neutral(0.384)	superfamily_SSF53448
HAS3	3038	genome.wustl.edu	37	16	69152264	69152264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138612.1	+1	reviewed	p.G249W	0.970	188	0%	140	38.6%	234	44.8%	unknown(0)	deleterious(0)	-	superfamily_SSF53448
CIRH1A	84916	genome.wustl.edu	37	16	69170708	69170708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032830.2	+1	reviewed	p.A90V	0.745	321	0%	265	46.4%	51	54.9%	benign(0.055)	tolerated(0.16)	neutral(0.063)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ENSG00000226232	0	genome.wustl.edu	37	16	70010544	70010544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437824	-1	known	p.R245H	0.003	27	0%	21	47.6%	2	0%	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	HMMPfam_NPIP
COG4	25839	genome.wustl.edu	37	16	70514975	70514975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015386.2	-1	validated	p.R770C	1.000	42	0%	33	51.5%	87	43.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COG4	25839	genome.wustl.edu	37	16	70542361	70542361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015386.2	-1	validated	p.H337Y	1.000	504	0%	420	47.6%	51	47%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_COG4,HMMSmart_SM00762
MARVELD3	91862	genome.wustl.edu	37	16	71663374	71663374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017967.2	+1	validated	p.C191Y	1.000	146	0%	106	15.1%	25	12%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
MARVELD3	91862	genome.wustl.edu	37	16	71674489	71674489	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017967.2	+1	validated	p.S264	0.215	129	0.8%	76	55.3%	30	50%	-	-	-	HMMPfam_MARVEL
HP	3240	genome.wustl.edu	37	16	72090132	72090132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356967	+1	known	p.R3Q	0.000	375	0%	255	47.8%	1	0%	benign(0.142)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72830284	72830284	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.P2099	0.101	67	0%	48	35.4%	1	100%	-	-	-	NULL
RFWD3	55159	genome.wustl.edu	37	16	74695153	74695153	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018124.3	-1	validated	p.A65	0.000	91	0%	64	35.9%	27	37%	-	-	-	NULL
LDHD	197257	genome.wustl.edu	37	16	75148129	75148129	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153486.2	-1	reviewed	p.F211	0.000	38	0%	35	60%	3	66.6%	-	-	-	superfamily_FAD-binding domain
BCAR1	9564	genome.wustl.edu	37	16	75271174	75271174	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014567.3	-1	validated	p.Y234	0.600	24	0%	19	57.9%	34	47%	-	-	-	NULL
CMIP	80790	genome.wustl.edu	37	16	81712067	81712067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198390.2	+1	validated	p.R408C	1.000	23	0%	13	69.2%	41	43.9%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84211407	84211407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178452.4	+1	reviewed	p.T713M	0.000	131	0%	78	48.7%	3	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
ATP2C2	9914	genome.wustl.edu	37	16	84438810	84438810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014861.2	+1	validated	p.A96V	0.014	147	0%	71	40.8%	5	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
ATP2C2	9914	genome.wustl.edu	37	16	84456044	84456044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014861.2	+1	validated	p.P225S	1.000	170	0%	109	45%	3	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
USP10	9100	genome.wustl.edu	37	16	84797808	84797808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005153.2	+1	reviewed	p.V591I	0.898	201	0%	133	54.9%	91	37.3%	benign(0.291)	tolerated(0.32)	neutral(0.113)	HMMPfam_UCH,superfamily_SSF54001
ZC3H18	124245	genome.wustl.edu	37	16	88691668	88691668	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144604.3	+1	validated	p.R701*	1.000	87	0%	50	50%	25	20%	-	-	-	NULL
DPEP1	1800	genome.wustl.edu	37	16	89704334	89704334	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128141.1	+1	validated	p.G340	0.129	190	0%	111	51.4%	7	57.1%	-	-	-	HMMPfam_Peptidase_M19,superfamily_SSF51556
ZNF276	92822	genome.wustl.edu	37	16	89804413	89804413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113525.1	+1	validated	p.Q535R	1.000	74	0%	46	52.2%	42	52.3%	possibly_damaging(0.891)	deleterious(0.04)	deleterious(0.700)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FANCA	2175	genome.wustl.edu	37	16	89811383	89811383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000135.2	-1	reviewed	p.R1204W	0.003	101	0%	59	32.2%	20	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ABR	29	genome.wustl.edu	37	17	914004	914004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021962.2	-1	reviewed	p.T734M	1.000	103	0%	56	35.7%	35	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ABR	29	genome.wustl.edu	37	17	1028553	1028553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021962.2	-1	reviewed	p.V71I	0.979	68	0%	44	61.4%	0	-	benign(0.007)	tolerated(0.59)	neutral(0.004)	superfamily_DBL homology domain (DH-domain)
SLC43A2	124935	genome.wustl.edu	37	17	1494645	1494645	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152346.1	-1	provisional	p.K283	1.000	31	0%	28	39.3%	58	50%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RILP	83547	genome.wustl.edu	37	17	1550250	1550250	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031430.2	-1	validated	p.S326	0.434	183	0%	127	48%	4	50%	-	-	-	NULL
PRPF8	10594	genome.wustl.edu	37	17	1586951	1586951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.R49W	1.000	329	0%	242	48.8%	47	48.9%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TSR1	55720	genome.wustl.edu	37	17	2228042	2228042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018128.4	-1	validated	p.G701D	1.000	222	0%	181	41.4%	60	55%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_DUF663
SPATA22	84690	genome.wustl.edu	37	17	3352395	3352395	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032598.4	-1	validated	p.N126	1.000	350	0.3%	270	53.3%	0	-	-	-	-	NULL
CAMKK1	84254	genome.wustl.edu	37	17	3783678	3783678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172207.2	-1	reviewed	p.R291H	0.992	71	0%	29	62.1%	1	100%	benign(0.315)	deleterious(0.02)	deleterious(0.482)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RNF167	26001	genome.wustl.edu	37	17	4846728	4846728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015528.1	+1	provisional	p.R195H	1.000	245	0%	167	44.3%	180	50.5%	benign(0.212)	deleterious(0.01)	neutral(0.426)	NULL
CAMTA2	23125	genome.wustl.edu	37	17	4889221	4889221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015099.3	-1	validated	p.R30H	0.998	218	0%	162	48.1%	13	30.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC52A1	55065	genome.wustl.edu	37	17	4937350	4937350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104577.1	-1	validated	p.R145Q	0.997	281	0%	139	48.2%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
ZNF594	84622	genome.wustl.edu	37	17	5085816	5085816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032530.1	-1	validated	p.G579D	0.000	282	0%	200	47%	5	60%	probably_damaging(0.988)	tolerated(0.2)	deleterious(0.486)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DHX33	56919	genome.wustl.edu	37	17	5347610	5347610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020162.2	-1	reviewed	p.R680Q	0.998	153	0%	122	47.5%	28	53.5%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_DUF1605
NLRP1	22861	genome.wustl.edu	37	17	5486002	5486002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033004.3	-1	reviewed	p.R146C	0.000	91	0%	66	24.2%	9	0%	benign(0.377)	deleterious(0)	deleterious(0.565)	NULL
DLG4	1742	genome.wustl.edu	37	17	7094642	7094642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001365.3	-1	reviewed	p.R714H	1.000	297	0%	215	43.3%	14	50%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMSmart_GuKc,HMMPfam_Gua_kin_assoc_C,superfamily_SSF52540
SLC2A4	6517	genome.wustl.edu	37	17	7189779	7189779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042.2	+1	reviewed	p.A454V	1.000	442	0%	278	45.7%	0	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
ACAP1	9744	genome.wustl.edu	37	17	7245304	7245304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014716.3	+1	validated	p.R50H	0.110	117	0%	93	50.5%	1	0%	benign(0.013)	deleterious(0.02)	neutral(0.384)	NULL
POLR2A	5430	genome.wustl.edu	37	17	7402796	7402796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.V553I	1.000	227	0%	144	35.4%	52	67.3%	benign(0.106)	tolerated(0.19)	neutral(0.058)	HMMPfam_RNA_pol_Rpb1_3,superfamily_SSF64484
DNAH2	146754	genome.wustl.edu	37	17	7637955	7637955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.V303I	0.996	150	0%	102	51%	0	-	benign(0.081)	tolerated(1)	neutral(0.006)	HMMPfam_DHC_N1
GUCY2D	3000	genome.wustl.edu	37	17	7918754	7918754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000180.3	+1	reviewed	p.V960M	0.993	48	0%	21	57.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ALOX15B	247	genome.wustl.edu	37	17	7948582	7948582	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141.2	+1	reviewed	p.H292	0.077	103	0%	80	58.8%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
PIK3R5	23533	genome.wustl.edu	37	17	8791552	8791552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142633.1	-1	validated	p.R518C	0.933	63	0%	26	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3K_1B_p101
RCVRN	5957	genome.wustl.edu	37	17	9808123	9808123	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002903.2	-1	reviewed	p.I125	1.000	85	0%	70	40%	0	-	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
MYH4	4622	genome.wustl.edu	37	17	10352252	10352252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.L1432F	1.000	165	0%	108	42.6%	0	-	possibly_damaging(0.941)	deleterious(0.01)	deleterious(0.792)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10355525	10355525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.A1157	0.283	173	0%	176	14.2%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10398373	10398373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.A1781T	1.000	407	0%	317	49.8%	0	-	possibly_damaging(0.762)	tolerated(0.32)	neutral(0.306)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10544635	10544635	+	Missense_Mutation	SNP	G	G	A	rs121913618		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.R672C	1.000	172	0%	125	40.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
DNAH9	1770	genome.wustl.edu	37	17	11583091	11583091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.A1124V	0.000	258	0%	182	46.7%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_Spectrin repeat
DNAH9	1770	genome.wustl.edu	37	17	11687012	11687012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.V2590I	0.402	188	0%	112	38.4%	0	-	benign(0.388)	tolerated(0.14)	neutral(0.373)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDRT1	374286	genome.wustl.edu	37	17	15496744	15496744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006382.3	-1	provisional	p.R638Q	1.000	338	0%	316	43.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TRPV2	51393	genome.wustl.edu	37	17	16327007	16327007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016113.3	+1	reviewed	p.V284M	0.006	42	0%	38	50%	6	0%	benign(0.059)	tolerated(0.19)	neutral(0.054)	superfamily_ANK
ZNF624	57547	genome.wustl.edu	37	17	16526138	16526138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020787.2	-1	validated	p.R688*	0.980	353	0%	247	50.2%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MPRIP	23164	genome.wustl.edu	37	17	17046881	17046881	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015134.2	+1	validated	p.N349	0.003	67	0%	58	58.6%	34	38.2%	-	-	-	NULL
MPRIP	23164	genome.wustl.edu	37	17	17075165	17075165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015134.2	+1	validated	p.A766V	0.996	64	0%	49	36.7%	55	50.9%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
LOC100289519	100289519	genome.wustl.edu	37	17	17394889	17394889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343482.1	-1	model	p.T54M	0.000	29	0%	20	50%	15	26.6%	-	-	-	NULL
RAI1	10743	genome.wustl.edu	37	17	17701499	17701499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030665.3	+1	reviewed	p.A1746V	0.000	10	0.000	8	0.500	26	46.1%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
RAI1	10743	genome.wustl.edu	37	17	17701660	17701660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030665.3	+1	reviewed	p.D1800N	1.000	19	0.000	7	0.571	20	35%	probably_damaging(0.963)	tolerated(0.08)	deleterious(0.706)	NULL
SHMT1	6470	genome.wustl.edu	37	17	18250897	18250897	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004169.3	-1	reviewed	p.P144	0.000	156	0%	132	50%	62	50%	-	-	-	HMMPfam_SHMT,superfamily_PLP-dependent transferases
MAPK7	5598	genome.wustl.edu	37	17	19284025	19284025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002749.3	+1	reviewed	p.R168Q	1.000	129	0%	97	46.4%	15	40%	unknown(0)	deleterious(0)	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC47A1	55244	genome.wustl.edu	37	17	19470509	19470509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018242.2	+1	validated	p.A426V	0.008	234	0%	158	47.5%	2	50%	benign(0)	tolerated(1)	-	HMMPfam_MatE
SUPT6H	6830	genome.wustl.edu	37	17	27028130	27028130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.R1660W	0.997	281	0.4%	231	51.1%	111	46.8%	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	NULL
DHRS13	147015	genome.wustl.edu	37	17	27228199	27228199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144683.3	-1	validated	p.R164H	1.000	58	0%	34	41.2%	20	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
TP53I13	90313	genome.wustl.edu	37	17	27898960	27898960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138349.2	+1	provisional	p.R133Q	0.001	64	0%	49	44.9%	55	36.3%	benign(0.037)	tolerated(0.29)	neutral(0.031)	NULL
CORO6	84940	genome.wustl.edu	37	17	27943172	27943172	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032854.3	-1	validated	p.L362	1.000	90	0%	54	35.2%	0	-	-	-	-	HMMPfam_DUF1900
LRRC37B	114659	genome.wustl.edu	37	17	30348299	30348299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052888.2	+1	validated	p.P45H	0.006	168	0%	106	18.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TMEM98	26022	genome.wustl.edu	37	17	31263423	31263423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033504.1	+1	validated	p.S124N	0.993	170	0%	116	36.2%	199	48.2%	possibly_damaging(0.49)	tolerated(0.68)	neutral(0.165)	NULL
UNC45B	146862	genome.wustl.edu	37	17	33475287	33475287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173167.2	+1	validated	p.A2V	0.926	65	0%	40	52.5%	0	-	benign(0.424)	deleterious(0.03)	deleterious(0.502)	NULL
PIP4K2B	8396	genome.wustl.edu	37	17	36943126	36943126	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003559.4	-1	reviewed	p.D69	1.000	397	0%	298	42.6%	19	31.5%	-	-	-	HMMSmart_SM00330,superfamily_SAICAR synthase-like
MED1	5469	genome.wustl.edu	37	17	37571506	37571506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004774.3	-1	reviewed	p.L462M	1.000	87	0%	84	35.7%	19	52.6%	unknown(0)	tolerated(0.12)	-	NULL
ERBB2	2064	genome.wustl.edu	37	17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	rs121913470		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.L755S	1.000	282	0%	241	44.4%	267	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ERBB2	2064	genome.wustl.edu	37	17	37881332	37881332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.V842I	1.000	70	0%	56	51.8%	259	47.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
ERBB2	2064	genome.wustl.edu	37	17	37881620	37881620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.R897Q	1.000	215	0%	179	49.2%	307	48.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MED24	9862	genome.wustl.edu	37	17	38186053	38186053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014815.3	-1	reviewed	p.P405H	1.000	680	0%	412	42.7%	83	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRT23	25984	genome.wustl.edu	37	17	39081718	39081718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015515.3	-1	reviewed	p.R344C	0.339	511	0%	382	50.5%	24	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
JUP	3728	genome.wustl.edu	37	17	39913718	39913718	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.S665	0.114	153	0%	102	37.3%	558	47.4%	-	-	-	NULL
ACLY	47	genome.wustl.edu	37	17	40024982	40024982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001096.2	-1	reviewed	p.G1064E	1.000	349	0%	273	42.1%	154	50.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Citrate_synthase_core
DHX58	79132	genome.wustl.edu	37	17	40253879	40253879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024119.2	-1	validated	p.R646Q	0.006	78	0%	59	37.3%	16	43.7%	possibly_damaging(0.594)	deleterious(0.02)	deleterious(0.588)	NULL
DHX58	79132	genome.wustl.edu	37	17	40259722	40259722	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024119.2	-1	validated	p.A299	0.616	59	0%	42	38.1%	15	20%	-	-	-	superfamily_SSF52540
STAT5A	6776	genome.wustl.edu	37	17	40457694	40457694	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003152.3	+1	reviewed	p.L483	1.000	92	0%	39	17.9%	5	0%	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind
ATP6V0A1	535	genome.wustl.edu	37	17	40630566	40630566	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130020.1	+1	reviewed	p.R205*	1.000	175	0%	155	14.8%	14	0%	-	-	-	HMMPfam_V_ATPase_I
VAT1	10493	genome.wustl.edu	37	17	41168514	41168514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006373.3	-1	validated	p.R303Q	1.000	77	0%	48	41.7%	203	44.3%	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	superfamily_NAD(P)-binding Rossmann-fold domains
BRCA1	672	genome.wustl.edu	37	17	41244935	41244935	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007294.3	-1	reviewed	p.P871	0.991	124	0%	123	40.7%	7	28.5%	-	-	-	NULL
HDAC5	10014	genome.wustl.edu	37	17	42169645	42169645	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015053.1	-1	reviewed	p.S310	0.843	191	0%	126	85.7%	21	100%	-	-	-	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42478300	42478300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002909.1	-1	validated	p.R382Q	1.000	129	0%	81	95.1%	12	100%	unknown(0)	tolerated(0.36)	-	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42483365	42483365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002909.1	-1	validated	p.R183C	1.000	177	0%	112	95.5%	13	84.6%	unknown(0)	deleterious(0.01)	-	NULL
FZD2	2535	genome.wustl.edu	37	17	42635789	42635789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.R245C	1.000	50	0%	30	96.7%	27	100%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Frizzled
DBF4B	80174	genome.wustl.edu	37	17	42818788	42818788	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145663.1	+1	validated	p.A266	0.001	223	0%	165	15.8%	12	25%	-	-	-	NULL
KANSL1	284058	genome.wustl.edu	37	17	44111532	44111532	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.T887	0.743	364	0%	272	94.9%	35	100%	-	-	-	NULL
NPEPPS	9520	genome.wustl.edu	37	17	45663518	45663518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006310.3	+1	reviewed	p.A285V	1.000	208	0.5%	133	13.5%	36	22.2%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_Peptidase_M1,superfamily_SSF55486
IGF2BP1	10642	genome.wustl.edu	37	17	47122409	47122409	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006546.3	+1	reviewed	p.P459	0.985	363	0%	313	47.3%	0	-	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ZNF652	22834	genome.wustl.edu	37	17	47390147	47390147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145365.1	-1	validated	p.V321I	1.000	210	0%	155	16.1%	2	50%	probably_damaging(0.99)	tolerated(0.45)	neutral(0.454)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPOP	8405	genome.wustl.edu	37	17	47696461	47696461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007226.1	-1	reviewed	p.R121Q	1.000	187	0%	141	93.6%	28	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
KAT7	11143	genome.wustl.edu	37	17	47899044	47899044	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007067.3	+1	provisional	p.K426N	1.000	278	0%	236	91.5%	24	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
COL1A1	1277	genome.wustl.edu	37	17	48272099	48272099	+	Missense_Mutation	SNP	C	C	T	rs72648344		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.G482R	1.000	35	0%	26	92.3%	140	0.7%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
MYCBPAP	84073	genome.wustl.edu	37	17	48604688	48604688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032133.4	+1	validated	p.A780V	0.951	73	0%	65	55.4%	0	-	probably_damaging(0.978)	tolerated(0.54)	neutral(0.428)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48677100	48677100	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.R1190	0.325	49	0%	32	100%	0	-	-	-	-	NULL
MSI2	124540	genome.wustl.edu	37	17	55339543	55339543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138962.2	+1	reviewed	p.A101V	1.000	417	0%	330	50.6%	27	44.4%	benign(0.054)	tolerated(0.1)	neutral(0.290)	NULL
EPX	8288	genome.wustl.edu	37	17	56274530	56274530	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.N344	0.092	166	0%	110	48.2%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
EPX	8288	genome.wustl.edu	37	17	56277639	56277639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.R531S	0.931	90	0%	55	30.9%	0	-	possibly_damaging(0.927)	tolerated(0.52)	neutral(0.384)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
CLTC	1213	genome.wustl.edu	37	17	57760463	57760463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004859.3	+1	reviewed	p.G1294V	1.000	309	0.3%	212	50%	196	52%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
PPM1D	8493	genome.wustl.edu	37	17	58734161	58734161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003620.2	+1	reviewed	p.C407R	0.001	154	0%	119	26.1%	31	38.7%	benign(0.027)	deleterious(0)	neutral(0.446)	NULL
PSMC5	5705	genome.wustl.edu	37	17	61907825	61907825	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002805.4	+1	reviewed	p.P172	0.999	120	0%	95	14.7%	225	14.2%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ERN1	2081	genome.wustl.edu	37	17	62130262	62130262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001433.3	-1	reviewed	p.D711N	1.000	128	0%	104	52.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ERN1	2081	genome.wustl.edu	37	17	62144103	62144103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001433.3	-1	reviewed	p.S257F	1.000	116	0%	91	51.6%	0	-	probably_damaging(0.982)	tolerated(0.07)	deleterious(0.746)	NULL
HELZ	9931	genome.wustl.edu	37	17	65184512	65184512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014877.3	-1	validated	p.R362H	1.000	146	0%	111	21.6%	6	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIF19	124602	genome.wustl.edu	37	17	72342563	72342563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153209.3	+1	validated	p.R275H	1.000	77	0%	50	92%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
USH1G	124590	genome.wustl.edu	37	17	72916503	72916503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173477.2	-1	reviewed	p.A143V	1.000	46	0%	31	93.5%	0	-	possibly_damaging(0.642)	deleterious(0.04)	deleterious(0.574)	superfamily_ANK
TSEN54	283989	genome.wustl.edu	37	17	73518243	73518243	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207346.2	+1	reviewed	p.Q361*	0.000	16	0%	17	29.4%	52	5.7%	-	-	-	NULL
TSEN54	283989	genome.wustl.edu	37	17	73518349	73518349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207346.2	+1	reviewed	p.R396Q	0.000	2	0.000	5	1.000	43	95.3%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
ITGB4	3691	genome.wustl.edu	37	17	73746787	73746787	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000213.3	+1	reviewed	p.S1167	0.001	27	0%	27	29.6%	157	47.7%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MRPL38	64978	genome.wustl.edu	37	17	73895358	73895358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032478.3	-1	reviewed	p.R296Q	0.958	98	0%	59	50.8%	129	53.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PBP,superfamily_PEBP
UBE2O	63893	genome.wustl.edu	37	17	74392354	74392354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022066.3	-1	validated	p.K888N	1.000	140	0%	92	45.7%	22	40.9%	possibly_damaging(0.707)	tolerated(0.69)	neutral(0.257)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76548779	76548779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.G763C	1.000	267	0.4%	167	20.4%	0	-	possibly_damaging(0.77)	deleterious(0.04)	deleterious(0.635)	HMMPfam_DHC_N1
GAA	2548	genome.wustl.edu	37	17	78087028	78087028	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000152.3	+1	reviewed	p.P684	0.002	57	0%	41	41.5%	61	49.1%	-	-	-	HMMPfam_Glyco_hydro_31
CARD14	79092	genome.wustl.edu	37	17	78162327	78162327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024110.2	+1	reviewed	p.S276L	0.816	106	0%	77	49.4%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
SGSH	6448	genome.wustl.edu	37	17	78185891	78185891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000199.3	-1	reviewed	p.E310K	1.000	73	0%	50	52%	40	50%	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
LOC388428	388428	genome.wustl.edu	37	17	79152785	79152785	+	RNA	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027255.1	+1	validated	NULL	0.213	53	0%	48	60.4%	0	-	-	-	-	-
BAHCC1	57597	genome.wustl.edu	37	17	79422325	79422325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436173	+1	known	p.A1493V	0.112	38	0%	14	50%	7	28.5%	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	NULL
TSPAN10	83882	genome.wustl.edu	37	17	79612402	79612402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000328585	+1	known	p.G141C	1.000	57	0%	37	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tetraspannin,PatternScan_TM4_1
C17orf90	339229	genome.wustl.edu	37	17	79632418	79632418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039842.1	-1	predicted	p.P86L	0.964	37	0%	30	96.7%	93	95.6%	benign(0.022)	tolerated(0.17)	neutral(0.060)	NULL
GCGR	2642	genome.wustl.edu	37	17	79771366	79771366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400723	+1	known	p.R412Q	0.000	33	0%	21	57.1%	0	-	benign(0.098)	tolerated(0.32)	neutral(0.032)	superfamily_SSF81321
P4HB	5034	genome.wustl.edu	37	17	79805125	79805125	+	Silent	SNP	G	G	A	rs142657365	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439918	-1	known	p.R28*	0.000	222	0%	154	48.7%	389	49.6%	-	-	-	superfamily_Thioredoxin-like
ALYREF	10189	genome.wustl.edu	37	17	79847171	79847171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005782.3	-1	reviewed	p.A135V	0.993	207	0%	146	46.6%	383	45.1%	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PYCR1	5831	genome.wustl.edu	37	17	79892203	79892203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006907.2	-1	reviewed	p.R266W	0.995	37	0%	33	100%	57	98.2%	possibly_damaging(0.454)	deleterious(0.02)	deleterious(0.531)	NULL
STRA13	201254	genome.wustl.edu	37	17	79977781	79977781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144998.2	-1	validated	p.L14R	1.000	40	0%	23	60.9%	56	28.5%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_DUF2008
DUS1L	64118	genome.wustl.edu	37	17	80022090	80022090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022156.3	-1	validated	p.E86D	0.950	87	0%	62	41.9%	121	42.1%	benign(0.004)	tolerated(0.91)	-	HMMPfam_Dus,superfamily_SSF51395
HEXDC	284004	genome.wustl.edu	37	17	80398967	80398967	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173620.2	+1	validated	p.S359	0.000	102	0%	59	25.4%	11	81.8%	-	-	-	NULL
NDC80	10403	genome.wustl.edu	37	18	2573022	2573022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006101.2	+1	validated	p.R13H	1.000	201	0%	148	25.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ndc80_HEC
SMCHD1	23347	genome.wustl.edu	37	18	2694682	2694682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.R344Q	1.000	171	0%	138	46.4%	6	33.3%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2891856	2891856	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.R577	0.000	93	0%	83	44.6%	8	50%	-	-	-	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2909723	2909723	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.A910	0.023	211	0%	148	43.2%	7	14.2%	-	-	-	HMMPfam_C1q,superfamily_TNF_like
SLC35G4	646000	genome.wustl.edu	37	18	11644392	11644392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424015	+1	known	p.Q195*	0.217	113	0%	68	27.9%	0	-	-	-	-	NULL
CIDEA	1149	genome.wustl.edu	37	18	12264409	12264409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198289.2	+1	reviewed	p.N130S	1.000	200	0%	183	11.5%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_CIDE-N,HMMSmart_CAD,superfamily_SSF54277
GREB1L	80000	genome.wustl.edu	37	18	19034409	19034409	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142966.1	+1	provisional	p.A689	0.161	205	0%	171	55.6%	0	-	-	-	-	PatternScan_ASP_PROTEASE
TTC39C	125488	genome.wustl.edu	37	18	21708875	21708875	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135993.1	+1	validated	p.S482	0.988	648	0.2%	493	48.5%	20	35%	-	-	-	HMMPfam_Deme6,superfamily_TPR-like
ZNF521	25925	genome.wustl.edu	37	18	22804549	22804549	+	Silent	SNP	G	G	A	rs34380309	byCluster;byFrequency;by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.P1111	0.998	230	0%	156	43.6%	3	0%	-	-	-	NULL
DSG4	147409	genome.wustl.edu	37	18	28979343	28979343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.V372M	0.988	295	0%	209	43.5%	1	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
FAM59A	64762	genome.wustl.edu	37	18	29867059	29867059	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022751.1	-1	provisional	p.G501*	0.574	135	0%	89	48.3%	0	-	-	-	-	NULL
ZNF24	7572	genome.wustl.edu	37	18	32917479	32917479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006965.2	-1	validated	p.G275E	1.000	202	0%	178	41.6%	31	51.6%	possibly_damaging(0.884)	deleterious(0)	deleterious(0.789)	superfamily_SSF57667
RPRD1A	55197	genome.wustl.edu	37	18	33606960	33606960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018170.3	-1	provisional	p.A231V	1.000	182	0.5%	109	43.1%	52	30.7%	benign(0.171)	deleterious(0.02)	neutral(0.399)	NULL
FHOD3	80206	genome.wustl.edu	37	18	34289279	34289279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025135.2	+1	validated	p.S645P	1.000	65	0%	38	23.7%	0	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44140269	44140269	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441551	-1	known	p.R927*	0.017	166	0%	105	59%	0	-	-	-	-	NULL
PIAS2	9063	genome.wustl.edu	37	18	44470843	44470843	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004671.2	-1	validated	p.R67*	0.830	82	1.2%	60	45%	20	60%	-	-	-	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44560610	44560610	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016427.2	-1	reviewed	p.N342	0.000	87	0%	67	40.3%	0	-	-	-	-	NULL
HDHD2	84064	genome.wustl.edu	37	18	44641547	44641547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032124.4	-1	validated	p.R190W	1.000	146	0%	124	45.2%	46	56.5%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_Hydrolase,superfamily_HAD-like
RPL17	6139	genome.wustl.edu	37	18	47015859	47015859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000985.3	-1	reviewed	p.R126H	1.000	141	0%	160	57.5%	682	0%	benign(0.013)	deleterious(0)	neutral(0.445)	HMMPfam_Ribosomal_L22,superfamily_Ribosomal protein L22,PatternScan_RIBOSOMAL_L22
LIPG	9388	genome.wustl.edu	37	18	47095862	47095862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006033.2	+1	reviewed	p.A172V	1.000	97	0%	72	56.9%	11	72.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
MEX3C	51320	genome.wustl.edu	37	18	48703280	48703280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016626.4	-1	reviewed	p.S474N	1.000	159	0%	102	46.1%	66	60.6%	benign(0.205)	tolerated(0.3)	neutral(0.049)	NULL
DCC	1630	genome.wustl.edu	37	18	50994318	50994318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.A1225D	1.000	138	0%	85	42.4%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Neogenin_C
ZNF532	55205	genome.wustl.edu	37	18	56585747	56585747	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.G76	0.001	164	0%	104	43.3%	16	50%	-	-	-	NULL
ZNF532	55205	genome.wustl.edu	37	18	56646391	56646391	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.Y1085	0.997	86	0%	69	29%	13	0%	-	-	-	HMMSmart_ZnF_C2H2
SOCS6	9306	genome.wustl.edu	37	18	67992142	67992142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004232.3	+1	reviewed	p.R80W	1.000	135	0%	79	38%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM69C	125704	genome.wustl.edu	37	18	72103914	72103914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044369.2	-1	validated	p.P361H	0.000	57	0%	47	29.8%	1	0%	possibly_damaging(0.7)	tolerated(0.1)	deleterious(0.538)	NULL
ZNF516	9658	genome.wustl.edu	37	18	74091425	74091425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443185	-1	known	p.P882H	0.001	30	0%	18	50%	41	78%	possibly_damaging(0.684)	deleterious(0)	deleterious(0.689)	NULL
KCNG2	26251	genome.wustl.edu	37	18	77659090	77659090	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012283.1	+1	reviewed	p.C225	0.998	40	0%	17	47.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SHC2	25759	genome.wustl.edu	37	19	434832	434832	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012435.2	-1	validated	p.D329	0.682	46	0%	26	26.9%	3	33.3%	-	-	-	NULL
BSG	682	genome.wustl.edu	37	19	580728	580728	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001728.2	+1	reviewed	p.S246	0.001	68	0%	47	10.6%	1841	14.1%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
POLRMT	5442	genome.wustl.edu	37	19	619263	619263	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005035.3	-1	reviewed	p.R1034fs	0.025	-	-	-	-	-	-	-	-	-	HMMPfam_RNA_pol,superfamily_SSF56672
POLRMT	5442	genome.wustl.edu	37	19	624851	624851	+	Silent	SNP	G	G	A	rs189292153	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005035.3	-1	reviewed	p.A336	0.000	58	0%	40	60%	35	20%	-	-	-	NULL
C19orf21	126353	genome.wustl.edu	37	19	757198	757198	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173481.2	+1	predicted	p.S84	0.706	29	0%	11	54.5%	86	52.3%	-	-	-	NULL
PTBP1	5725	genome.wustl.edu	37	19	805011	805011	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002819.4	+1	reviewed	e8-2	0.977	73	0%	41	41.5%	3	100%	-	-	-	-
SBNO2	22904	genome.wustl.edu	37	19	1122968	1122968	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014963.2	-1	validated	p.T235	0.989	163	0%	92	26.1%	45	11.1%	-	-	-	NULL
MIDN	90007	genome.wustl.edu	37	19	1254454	1254454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177401.4	+1	validated	p.A225T	0.983	62	0%	37	59.5%	227	42.2%	benign(0.031)	tolerated(0.52)	neutral(0.010)	NULL
TCF3	6929	genome.wustl.edu	37	19	1621856	1621856	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003200.2	-1	validated	p.S312	0.008	13	0.000	9	0.444	155	49.6%	-	-	-	NULL
REXO1	57455	genome.wustl.edu	37	19	1819118	1819118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020695.3	-1	validated	p.R888H	0.828	18	0%	22	40.9%	34	41.1%	probably_damaging(0.96)	tolerated(0.36)	neutral(0.423)	NULL
KLF16	83855	genome.wustl.edu	37	19	1854498	1854498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031918.3	-1	validated	p.A240V	0.561	17	0%	16	50%	7	57.1%	unknown(0)	tolerated(0.12)	-	NULL
GNG7	2788	genome.wustl.edu	37	19	2515097	2515097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052847.2	-1	validated	p.R44W	0.999	106	0%	74	50%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like
TLE2	7089	genome.wustl.edu	37	19	3019708	3019708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003260.4	-1	validated	p.S120G	1.000	42	0%	24	50%	21	38%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_TLE_N
FSD1	79187	genome.wustl.edu	37	19	4317277	4317277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024333.2	+1	reviewed	p.A267S	1.000	152	0%	94	52.1%	0	-	probably_damaging(0.999)	tolerated(0.62)	deleterious(0.494)	superfamily_FN_III-like
UBXN6	80700	genome.wustl.edu	37	19	4446053	4446053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025241.2	-1	validated	p.C398Y	1.000	31	0%	20	30%	203	13.7%	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
UBXN6	80700	genome.wustl.edu	37	19	4454056	4454056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025241.2	-1	validated	p.A40T	0.041	251	0.4%	144	47.2%	75	52%	possibly_damaging(0.449)	tolerated(0.57)	neutral(0.153)	NULL
KDM4B	23030	genome.wustl.edu	37	19	5077430	5077430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015015.2	+1	validated	p.M243I	1.000	58	0%	41	43.9%	29	41.3%	possibly_damaging(0.548)	deleterious(0.01)	deleterious(0.592)	HMMSmart_SM00558,HMMPfam_JmjC
PTPRS	5802	genome.wustl.edu	37	19	5210566	5210566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.R1801C	1.000	160	0%	118	47.5%	152	49.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRS	5802	genome.wustl.edu	37	19	5240289	5240289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.T542M	0.399	30	0%	19	31.6%	60	50%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RFX2	5990	genome.wustl.edu	37	19	6002804	6002804	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000635.3	-1	reviewed	p.A526	0.107	88	0%	48	58.3%	3	100%	-	-	-	NULL
SLC25A23	79085	genome.wustl.edu	37	19	6442025	6442025	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024103.2	-1	validated	p.Y456	1.000	55	0%	29	48.3%	75	33.3%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
C3	718	genome.wustl.edu	37	19	6707176	6707176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.A719V	0.000	21	0%	27	55.6%	59	55.9%	benign(0.092)	tolerated(0.27)	neutral(0.041)	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,superfamily_Anaphylotoxins (complement system)
INSR	3643	genome.wustl.edu	37	19	7125350	7125350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.R1068W	1.000	79	0%	59	49.2%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ARHGEF18	23370	genome.wustl.edu	37	19	7505299	7505299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130955.1	+1	reviewed	p.G158D	1.000	39	0%	24	37.5%	16	12.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7593142	7593142	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020533.2	+1	reviewed	p.H292	0.707	71	0%	44	40.9%	24	50%	-	-	-	NULL
PNPLA6	10908	genome.wustl.edu	37	19	7614881	7614881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006702.4	+1	reviewed	p.A527V	0.995	71	0%	42	42.9%	40	45%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
CAMSAP3	57662	genome.wustl.edu	37	19	7680162	7680162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080429.2	+1	validated	p.Q949K	1.000	41	0%	37	21.6%	15	20%	possibly_damaging(0.794)	tolerated(0.28)	neutral(0.330)	NULL
STXBP2	6813	genome.wustl.edu	37	19	7707169	7707169	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006949.2	+1	reviewed	p.T248	0.810	77	0%	54	42.6%	116	49.1%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
HNRNPM	4670	genome.wustl.edu	37	19	8550657	8550657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005968.3	+1	validated	p.R449C	1.000	33	0%	19	52.6%	400	53.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMEM205	374882	genome.wustl.edu	37	19	11453601	11453601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145416.1	-1	validated	p.R154C	0.607	143	0%	94	37.2%	230	49.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CNN1	1264	genome.wustl.edu	37	19	11660463	11660463	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001299.4	+1	validated	p.S249	1.000	36	0%	19	42.1%	0	-	-	-	-	HMMPfam_Calponin,PatternScan_CALPONIN_1
ZNF823	55552	genome.wustl.edu	37	19	11833230	11833230	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080493.2	-1	validated	p.S373	0.000	322	0%	252	47.6%	8	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF700	90592	genome.wustl.edu	37	19	12060967	12060967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144566.1	+1	provisional	p.G710R	1.000	159	0%	106	49.1%	13	53.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637528	12637528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144976.3	-1	validated	p.R465Q	0.000	312	0.6%	205	44.9%	14	35.7%	possibly_damaging(0.922)	tolerated(1)	neutral(0.371)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DHPS	1725	genome.wustl.edu	37	19	12791010	12791010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001930.2	-1	reviewed	p.R113C	1.000	316	0%	238	40.8%	102	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain
ASNA1	439	genome.wustl.edu	37	19	12856259	12856259	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004317.2	+1	validated	p.S126	1.000	56	0%	45	53.3%	129	47.2%	-	-	-	HMMPfam_ArsA_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases
RFX1	5989	genome.wustl.edu	37	19	14076450	14076450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002918.4	-1	validated	p.R701W	1.000	91	0%	57	40.4%	32	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LPHN1	22859	genome.wustl.edu	37	19	14272342	14272342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008701.2	-1	reviewed	p.R436Q	1.000	123	0.8%	94	46.8%	26	46.1%	benign(0.005)	tolerated(0.05)	neutral(0.345)	NULL
CD97	976	genome.wustl.edu	37	19	14499567	14499567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078481.2	+1	reviewed	p.R43C	0.002	298	0%	188	46.8%	39	46.1%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMSmart_SM00181
BRD4	23476	genome.wustl.edu	37	19	15365050	15365050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058243.2	-1	reviewed	p.G691S	0.999	79	0%	46	56.5%	49	42.8%	possibly_damaging(0.948)	deleterious(0.04)	deleterious(0.740)	NULL
WIZ	58525	genome.wustl.edu	37	19	15538137	15538137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.P246L	0.323	32	0%	35	60%	65	35.3%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
OR10H2	26538	genome.wustl.edu	37	19	15839202	15839202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013939.2	+1	validated	p.V117I	0.868	378	0.3%	238	40.3%	0	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_7tm_1,superfamily_SSF81321
OR10H1	26539	genome.wustl.edu	37	19	15918845	15918845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013940.2	-1	validated	p.M1I	0.229	250	0%	159	49.7%	0	-	benign(0.183)	deleterious(0)	neutral(0.462)	superfamily_SSF81321
CYP4F11	57834	genome.wustl.edu	37	19	16038149	16038149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128932.1	-1	reviewed	p.G133V	1.000	174	0%	133	41.4%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_p450,superfamily_Cytochrome P450
CALR3	125972	genome.wustl.edu	37	19	16594786	16594786	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145046.3	-1	validated	p.P211	0.000	477	0%	377	47.2%	0	-	-	-	-	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl,superfamily_Calret_calnex_P
NWD1	284434	genome.wustl.edu	37	19	16910748	16910748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.G1036R	0.250	57	0%	48	45.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CPAMD8	27151	genome.wustl.edu	37	19	17004057	17004057	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443236	-1	known	p.R1898Q	0.010	64	0%	40	52.5%	1	0%	-	-	-	NULL
SLC27A1	376497	genome.wustl.edu	37	19	17615412	17615412	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198580.1	+1	provisional	p.F644	0.001	54	0%	45	46.7%	41	48.7%	-	-	-	NULL
B3GNT3	10331	genome.wustl.edu	37	19	17922515	17922515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014256.3	+1	reviewed	p.V235M	0.186	100	0%	74	47.3%	48	35.4%	possibly_damaging(0.78)	deleterious(0.01)	deleterious(0.697)	HMMPfam_Galactosyl_T
MAST3	23031	genome.wustl.edu	37	19	18254617	18254617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015016.1	+1	validated	p.S766L	0.000	46	0%	45	33.3%	5	60%	benign(0.039)	tolerated(0.2)	neutral(0.051)	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18376172	18376172	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145304.1	-1	validated	p.A726	0.000	150	0%	111	52.3%	4	50%	-	-	-	NULL
DDX49	54555	genome.wustl.edu	37	19	19038784	19038784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019070.4	+1	validated	p.A401V	0.777	169	0%	106	53.8%	113	41.5%	benign(0.056)	tolerated(0.09)	neutral(0.300)	superfamily_SSF52540
TMEM161A	54929	genome.wustl.edu	37	19	19230881	19230881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017814.1	-1	provisional	p.R433Q	0.001	28	0%	16	50%	54	50%	benign(0.002)	tolerated(1)	-	HMMPfam_Tmemb_161AB
GATAD2A	54815	genome.wustl.edu	37	19	19576391	19576391	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017660.3	+1	provisional	p.G79	0.000	53	0%	42	45.2%	73	50.6%	-	-	-	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790113	19790113	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033204.2	+1	provisional	p.S105	0.001	115	0%	118	46.6%	8	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF93	81931	genome.wustl.edu	37	19	20044084	20044084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031218.3	+1	validated	p.G107E	0.280	303	0%	240	44.2%	12	41.6%	benign(0.182)	tolerated(0.41)	neutral(0.032)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31768987	31768987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.T571M	0.794	178	0%	110	49.1%	0	-	possibly_damaging(0.91)	deleterious(0.03)	deleterious(0.727)	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33098636	33098636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.I760V	0.004	33	0%	29	41.4%	30	46.6%	benign(0)	tolerated(1)	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CEP89	84902	genome.wustl.edu	37	19	33409243	33409243	+	Missense_Mutation	SNP	C	C	T	rs182600896	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032816.3	-1	validated	p.R424H	0.005	153	0%	132	47.7%	9	33.3%	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
LRP3	4037	genome.wustl.edu	37	19	33693792	33693792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002333.3	+1	validated	p.R54C	0.993	45	0%	32	43.8%	65	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
LRP3	4037	genome.wustl.edu	37	19	33697585	33697585	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002333.3	+1	validated	p.I557	0.553	116	0%	65	49.2%	125	45.6%	-	-	-	NULL
PEPD	5184	genome.wustl.edu	37	19	33902607	33902607	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000285.3	-1	reviewed	p.N263	0.985	65	0%	47	40.4%	69	57.9%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
CHST8	64377	genome.wustl.edu	37	19	34263234	34263234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127895.1	+1	validated	p.V181M	1.000	20	0.000	7	0.714	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sulfotransfer_2
GPI	2821	genome.wustl.edu	37	19	34887543	34887543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000175.3	+1	reviewed	p.R417Q	1.000	74	0%	62	43.5%	531	44%	benign(0.031)	tolerated(0.14)	neutral(0.251)	HMMPfam_PGI,superfamily_SSF53697
PDCD2L	84306	genome.wustl.edu	37	19	34912478	34912478	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032346.1	+1	provisional	p.T284	0.004	140	0%	115	50.4%	25	52%	-	-	-	HMMPfam_PDCD2_C
LSR	51599	genome.wustl.edu	37	19	35758278	35758279	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205834.2	+1	validated	p.520in_frame_insG	0.995:0.996	-	-	-	-	-	-	-	-	-	NULL
FFAR3	2865	genome.wustl.edu	37	19	35849825	35849825	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005304.3	+1	validated	p.S11	0.000	205	1%	151	29.1%	0	-	-	-	-	NULL
GAPDHS	26330	genome.wustl.edu	37	19	36027728	36027728	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014364.4	+1	reviewed	p.P27	0.224	289	0%	255	47.8%	0	-	-	-	-	NULL
TMEM147	10430	genome.wustl.edu	37	19	36038233	36038233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032635.2	+1	provisional	p.V187I	1.000	116	0%	61	39.3%	289	51.2%	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
NFKBID	84807	genome.wustl.edu	37	19	36381327	36381327	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139239.1	-1	provisional	p.Q224	0.993	64	1.6%	44	40.9%	8	25%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NFKBID	84807	genome.wustl.edu	37	19	36387012	36387012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139239.1	-1	provisional	p.T159M	1.000	266	0%	187	50.3%	3	0%	possibly_damaging(0.705)	tolerated(0.22)	neutral(0.296)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LRFN3	79414	genome.wustl.edu	37	19	36430892	36430892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024509.1	+1	provisional	p.H189N	1.000	22	0.000	9	0.778	31	41.9%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_SSF52058
YIF1B	90522	genome.wustl.edu	37	19	38798271	38798271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039672.2	-1	validated	p.D221N	1.000	98	0%	62	46.8%	82	43.9%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_YIF1
RYR1	6261	genome.wustl.edu	37	19	38939101	38939101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A303T	1.000	46	0%	20	35%	0	-	benign(0.02)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR1	6261	genome.wustl.edu	37	19	38951182	38951182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.R843H	1.000	42	0%	17	47.1%	0	-	benign(0.431)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38993258	38993258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A2576T	1.000	35	0%	29	51.7%	0	-	probably_damaging(0.967)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39034442	39034442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A3980V	1.000	128	0%	94	40.4%	0	-	benign(0.054)	-	-	HMMPfam_RIH_assoc
HNRNPL	3191	genome.wustl.edu	37	19	39334654	39334654	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001533.2	-1	reviewed	p.Y267	0.967	222	0%	183	44.3%	400	49%	-	-	-	superfamily_SSF54928
FBXO17	115290	genome.wustl.edu	37	19	39435614	39435614	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148169.1	-1	reviewed	p.R239*	0.996	87	0%	57	40.4%	0	-	-	-	-	HMMPfam_FBA,superfamily_Galactose-binding domain-like
PLEKHG2	64857	genome.wustl.edu	37	19	39906077	39906077	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000205135	+1	known	p.A56V	1.000	80	0%	44	34.1%	15	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
PLEKHG2	64857	genome.wustl.edu	37	19	39912757	39912757	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000205135	+1	known	p.T370M	0.998	96	0%	63	57.1%	20	60%	-	-	-	NULL
LOC100289588	100289588	genome.wustl.edu	37	19	40362824	40362824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343681.1	+1	model	p.R98C	0.001	20	0%	11	72.7%	37	16.2%	-	-	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40377028	40377028	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.D3798	0.001	166	0%	91	26.4%	14	0%	-	-	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40421286	40421286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.R879C	0.003	45	0%	28	50%	1	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_VWD,HMMSmart_VWD
PSMC4	5704	genome.wustl.edu	37	19	40486259	40486259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006503.2	+1	reviewed	p.R329C	1.000	200	0%	131	38.2%	164	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF780B	163131	genome.wustl.edu	37	19	40554703	40554703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005851.2	-1	validated	p.G4*	0.995	514	0%	395	43.3%	2	0%	-	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF780A	284323	genome.wustl.edu	37	19	40580866	40580866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142577.1	-1	validated	p.H496Y	1.000	233	0%	171	49.7%	8	62.5%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C19orf47	126526	genome.wustl.edu	37	19	40842027	40842027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178830.2	-1	predicted	p.V41A	1.000	153	0%	99	49.5%	23	56.5%	possibly_damaging(0.572)	deleterious(0)	deleterious(0.641)	NULL
SPTBN4	57731	genome.wustl.edu	37	19	41060521	41060521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020971.2	+1	reviewed	p.R1685W	1.000	26	0%	18	61.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SHKBP1	92799	genome.wustl.edu	37	19	41089388	41089388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138392.3	+1	validated	p.V349M	0.265	66	1.5%	37	56.8%	60	46.6%	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	superfamily_WD40 repeat-like
SHKBP1	92799	genome.wustl.edu	37	19	41089541	41089541	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138392.3	+1	validated	p.N361	0.787	155	0%	75	41.3%	79	45.5%	-	-	-	superfamily_WD40 repeat-like
LTBP4	8425	genome.wustl.edu	37	19	41128310	41128310	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042544.1	+1	reviewed	p.R1141H	0.064	21	0%	12	33.3%	202	47.5%	-	-	-	NULL
NUMBL	9253	genome.wustl.edu	37	19	41183256	41183256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004756.3	-1	validated	p.K204R	1.000	28	0%	14	57.1%	8	75%	possibly_damaging(0.772)	tolerated(0.07)	deleterious(0.606)	HMMSmart_PTB
CYP2A6	1548	genome.wustl.edu	37	19	41355831	41355831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000762.5	-1	reviewed	p.V79M	0.975	244	0%	190	41.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CYP2S1	29785	genome.wustl.edu	37	19	41712380	41712380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030622.6	+1	reviewed	p.T501M	0.000	125	0%	101	53.5%	0	-	unknown(0)	-	-	NULL
HNRNPUL1	11100	genome.wustl.edu	37	19	41800572	41800572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007040.3	+1	reviewed	p.R500H	1.000	179	0%	109	45%	232	47.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BCKDHA	593	genome.wustl.edu	37	19	41925187	41925187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000709.3	+1	reviewed	p.T211M	1.000	153	0%	112	45.5%	63	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1_dh,superfamily_SSF52518
CEACAM5	1048	genome.wustl.edu	37	19	42218963	42218963	+	Silent	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398599	+1	known	p.L163M	0.001	301	0%	206	45.1%	2	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CEACAM5	1048	genome.wustl.edu	37	19	42224931	42224931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004363.2	+1	validated	p.P621T	0.157	396	0%	257	49.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DMRTC2	63946	genome.wustl.edu	37	19	42354752	42354752	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040283.1	+1	validated	p.H325	1.000	60	0%	35	60%	0	-	-	-	-	NULL
POU2F2	5452	genome.wustl.edu	37	19	42599726	42599726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002698.2	-1	validated	p.R293C	1.000	53	0%	25	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ERF	2077	genome.wustl.edu	37	19	42754535	42754535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006494.2	-1	validated	p.V69I	0.998	68	0%	44	54.5%	60	38.3%	possibly_damaging(0.776)	tolerated(0.21)	neutral(0.333)	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
CIC	23152	genome.wustl.edu	37	19	42793060	42793060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015125.3	+1	validated	p.V318I	0.230	30	0%	11	63.6%	39	46.1%	benign(0.007)	tolerated(0.2)	neutral(0.049)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42860014	42860014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.V1350I	0.999	47	0%	20	60%	10	30%	possibly_damaging(0.902)	tolerated(0.25)	neutral(0.394)	NULL
LIPE	3991	genome.wustl.edu	37	19	42914539	42914539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.E447K	0.091	33	0%	25	40%	3	33.3%	benign(0.361)	tolerated(0.07)	neutral(0.433)	HMMPfam_HSL_N
ZNF224	7767	genome.wustl.edu	37	19	44605020	44605020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013398.2	+1	validated	p.A28T	0.063	533	0%	464	44.6%	11	36.3%	benign(0.003)	tolerated(0.16)	neutral(0.059)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF225	7768	genome.wustl.edu	37	19	44636457	44636457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013362.2	+1	validated	p.G564R	0.997	203	0%	209	46.9%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
ZNF235	9310	genome.wustl.edu	37	19	44792827	44792827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004234.4	-1	reviewed	p.R254H	0.000	240	0%	195	49.2%	2	50%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_C2H2 and C2HC zinc fingers
CLASRP	11129	genome.wustl.edu	37	19	45562618	45562618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007056.2	+1	validated	p.V236I	1.000	108	0%	83	49.4%	46	39.1%	unknown(0)	tolerated(0.31)	-	NULL
CLASRP	11129	genome.wustl.edu	37	19	45565423	45565423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007056.2	+1	validated	p.R292Q	1.000	276	0.4%	214	43.5%	25	60%	unknown(0)	deleterious(0.01)	-	NULL
KLC3	147700	genome.wustl.edu	37	19	45848910	45848910	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177417.2	+1	reviewed	p.L37	0.998	14	0%	20	35%	7	42.8%	-	-	-	NULL
FOSB	2354	genome.wustl.edu	37	19	45976019	45976019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006732.2	+1	reviewed	p.L256	1.000	37	0%	33	42.4%	6	66.6%	-	-	-	NULL
GPR4	2828	genome.wustl.edu	37	19	46094209	46094209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005282.2	-1	validated	p.R306C	0.999	124	0%	100	52%	6	0%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	superfamily_SSF81321
CCDC8	83987	genome.wustl.edu	37	19	46914771	46914771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032040.3	-1	validated	p.R433W	0.000	191	0%	116	48.3%	32	53.1%	probably_damaging(0.972)	deleterious(0.04)	deleterious(0.763)	NULL
ENSG00000230510	0	genome.wustl.edu	37	19	47029022	47029022	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414155	-1	known	p.S82	0.978	53	0%	48	39.6%	1	100%	-	-	-	HMMPfam_PPP5
DHX34	9704	genome.wustl.edu	37	19	47870312	47870312	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.T556	0.007	303	0%	217	42.4%	22	54.5%	-	-	-	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX34	9704	genome.wustl.edu	37	19	47883211	47883211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.S984N	1.000	54	0%	36	47.2%	39	41%	benign(0.057)	tolerated(0.39)	neutral(0.019)	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47935431	47935431	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015063.2	-1	validated	p.S794	0.998	141	0%	75	50.7%	0	-	-	-	-	HMMPfam_Na_Ca_ex
NAPA	8775	genome.wustl.edu	37	19	48003993	48003993	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003827.2	-1	reviewed	p.A64	0.014	52	0%	44	40.9%	136	53.6%	-	-	-	superfamily_TPR-like
GLTSCR2	29997	genome.wustl.edu	37	19	48254313	48254313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015710.4	+1	validated	p.G183R	0.055	17	0%	19	52.6%	738	48.5%	possibly_damaging(0.492)	tolerated(0.42)	neutral(0.178)	HMMPfam_Nop53
DBP	1628	genome.wustl.edu	37	19	49134255	49134255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001352.3	-1	validated	p.R273C	0.961	57	0%	41	26.8%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,HMMPfam_bZIP_2
PLEKHA4	57664	genome.wustl.edu	37	19	49357520	49357520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020904.2	-1	validated	p.P350L	0.986	147	0%	118	49.2%	40	45%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
TEAD2	8463	genome.wustl.edu	37	19	49863319	49863319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003598.1	-1	provisional	p.R5Q	1.000	94	0%	64	46.9%	22	54.5%	possibly_damaging(0.928)	tolerated(0.27)	neutral(0.409)	NULL
CCDC155	147872	genome.wustl.edu	37	19	49912245	49912245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144688.4	+1	validated	p.R339C	0.992	299	0%	181	48.6%	0	-	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	NULL
CCDC155	147872	genome.wustl.edu	37	19	49920450	49920450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144688.4	+1	validated	p.P492S	0.989	55	0%	36	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOSIP	51070	genome.wustl.edu	37	19	50060501	50060501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015953.3	-1	provisional	p.Y88	0.548	41	0%	16	37.5%	161	49%	-	-	-	superfamily_SSF57850
PRR12	57479	genome.wustl.edu	37	19	50103065	50103065	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020719.1	+1	validated	p.L1405	0.168	49	0%	33	48.5%	30	50%	-	-	-	NULL
BCL2L12	83596	genome.wustl.edu	37	19	50173592	50173592	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138639.1	+1	reviewed	p.P267	0.010	20	0%	14	50%	33	48.4%	-	-	-	NULL
PNKP	11284	genome.wustl.edu	37	19	50365045	50365045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007254.2	-1	provisional	p.A428T	0.000	37	0%	28	64.3%	71	56.3%	benign(0.001)	tolerated(0.45)	neutral(0.012)	superfamily_SSF52540
NUP62	23636	genome.wustl.edu	37	19	50412396	50412396	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012346.3	-1	reviewed	p.A223	0.011	189	0%	128	60.2%	85	42.3%	-	-	-	NULL
VRK3	51231	genome.wustl.edu	37	19	50500823	50500823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016440.3	-1	reviewed	p.A206V	1.000	108	0%	64	37.5%	40	40%	possibly_damaging(0.663)	tolerated(0.17)	neutral(0.293)	HMMSmart_SM00220
LRRC4B	94030	genome.wustl.edu	37	19	51021678	51021678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080457.1	-1	provisional	p.T431M	1.000	40	0%	39	64.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
ETFB	2109	genome.wustl.edu	37	19	51856534	51856534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014763.1	-1	reviewed	p.R167H	1.000	60	0%	40	32.5%	149	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ETF,superfamily_SSF52402
SIGLEC10	89790	genome.wustl.edu	37	19	51919242	51919242	+	Missense_Mutation	SNP	C	C	A	rs184604120	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.G312W	0.000	74	0%	28	50%	0	-	benign(0.081)	tolerated(0.12)	neutral(0.267)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF432	9668	genome.wustl.edu	37	19	52536998	52536998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014650.2	-1	provisional	p.R645Q	0.024	193	0%	153	49.7%	9	44.4%	benign(0.214)	deleterious(0.04)	neutral(0.370)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52714672	52714672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.R144C	1.000	28	0%	26	50%	296	42.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_ARM repeat
PPP2R1A	5518	genome.wustl.edu	37	19	52716328	52716328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.R258C	1.000	38	0%	31	45.2%	330	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
ZNF321P	399669	genome.wustl.edu	37	19	53432482	53432482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203307.2	-1	validated	p.E57K	0.001	458	0%	306	48.7%	13	53.8%	probably_damaging(0.999)	tolerated(0.52)	deleterious(0.499)	NULL
NLRP12	91662	genome.wustl.edu	37	19	54327315	54327315	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.L38	0.330	91	0%	63	27%	0	-	-	-	-	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain
CNOT3	4849	genome.wustl.edu	37	19	54655998	54655998	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457463	+1	known	p.G79R	0.824	52	0%	40	22.5%	58	22.4%	-	-	-	NULL
MBOAT7	79143	genome.wustl.edu	37	19	54691192	54691192	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495968	-1	known	NULL	0.000	126	0%	82	52.4%	0	-	-	-	-	-
LILRA2	11027	genome.wustl.edu	37	19	55098751	55098751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130917.1	+1	validated	p.G464R	0.000	236	0%	165	41.8%	0	-	benign(0.019)	tolerated(0.06)	neutral(0.324)	NULL
ZNF628	89887	genome.wustl.edu	37	19	55993156	55993156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033113.2	+1	validated	p.T195M	1.000	25	0%	11	45.5%	8	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
FIZ1	84922	genome.wustl.edu	37	19	56104887	56104887	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032836.2	-1	reviewed	p.P140	0.001	37	0%	15	40%	13	46.1%	-	-	-	NULL
U2AF2	11338	genome.wustl.edu	37	19	56180829	56180829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007279.2	+1	reviewed	p.P355H	0.974	98	0%	97	60.8%	398	52.5%	possibly_damaging(0.949)	deleterious(0.05)	deleterious(0.738)	NULL
EPN1	29924	genome.wustl.edu	37	19	56196840	56196840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130071.1	+1	validated	p.V214M	0.982	53	0%	28	60.7%	225	47.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
NLRP4	147945	genome.wustl.edu	37	19	56369169	56369169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.R137H	0.000	179	0%	135	46.7%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF471	57573	genome.wustl.edu	37	19	57037094	57037094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.S553N	0.148	207	0.5%	174	44.8%	0	-	possibly_damaging(0.942)	tolerated(0.14)	deleterious(0.637)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEG3	5178	genome.wustl.edu	37	19	57325360	57325360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.G1484S	0.003	210	0%	136	47.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
AURKC	6795	genome.wustl.edu	37	19	57743436	57743436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015878.1	+1	reviewed	p.R47H	0.996	135	0%	78	48.7%	0	-	benign(0.411)	deleterious(0)	deleterious(0.578)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100131296	100131296	genome.wustl.edu	37	19	57862898	57862898	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725645.2	-1	model	p.R78	0.000	38	0%	23	43.5%	0	-	-	-	-	NULL
ZNF17	7565	genome.wustl.edu	37	19	57932225	57932225	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006959.2	+1	validated	p.F455	0.000	191	0%	132	47.7%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF776	284309	genome.wustl.edu	37	19	58265495	58265495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173632.3	+1	validated	p.R333C	0.000	256	0.4%	178	41%	9	22.2%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58420997	58420997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152475.2	-1	validated	p.R217C	0.000	505	0%	355	36.1%	6	33.3%	benign(0.002)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
LOC100288459	100288459	genome.wustl.edu	37	19	58596562	58596562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343664.1	+1	model	p.R95C	0.001	16	0%	11	63.6%	33	33.3%	-	-	-	NULL
ZNF329	79673	genome.wustl.edu	37	19	58640731	58640732	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024620.3	-1	validated	p.L47fs	0.015:0.000	-	-	-	-	-	-	-	-	-	NULL
ZSCAN22	342945	genome.wustl.edu	37	19	58850058	58850058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181846.2	+1	validated	p.S281L	0.000	79	0%	71	42.3%	2	50%	possibly_damaging(0.915)	tolerated(0.06)	deleterious(0.689)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TRIB3	57761	genome.wustl.edu	37	20	376933	376933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021158.3	+1	reviewed	p.V226M	1.000	34	0%	26	57.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Kinase_like,HMMPfam_Pkinase
SIRPA	140885	genome.wustl.edu	37	20	1903212	1903212	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040022.1	+1	reviewed	p.D336	0.002	235	0%	160	43.1%	0	-	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
TGM6	343641	genome.wustl.edu	37	20	2376022	2376022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198994.2	+1	validated	p.R122C	0.571	127	0%	91	40.7%	0	-	probably_damaging(0.974)	tolerated(0.07)	deleterious(0.735)	superfamily_E set domains
TMC2	117532	genome.wustl.edu	37	20	2604936	2604936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080751.2	+1	validated	p.D734N	1.000	133	0%	101	42.6%	0	-	benign(0.018)	tolerated(0.24)	neutral(0.038)	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3128843	3128843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.R292C	1.000	70	1.4%	55	29.1%	10	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3209830	3209830	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.S659	0.429	37	0%	35	45.7%	26	50%	-	-	-	HMMPfam_HCO3_cotransp
RASSF2	9770	genome.wustl.edu	37	20	4776526	4776526	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014737.2	-1	reviewed	p.N74	0.431	250	0.8%	173	12.7%	2	0%	-	-	-	NULL
RRBP1	6238	genome.wustl.edu	37	20	17616305	17616305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042576.1	-1	reviewed	p.R348Q	0.986	69	0%	41	36.6%	150	47.3%	probably_damaging(0.997)	tolerated(0.27)	deleterious(0.500)	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18163907	18163907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020536.4	+1	reviewed	p.T650M	1.000	188	0%	133	38.3%	26	53.8%	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	superfamily_Acyl_CoA_acyltransferase
C20orf26	26074	genome.wustl.edu	37	20	20056184	20056184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.T164M	0.000	172	0%	147	53.1%	1	0%	benign(0.083)	tolerated(0.14)	neutral(0.256)	NULL
SSTR4	6754	genome.wustl.edu	37	20	23016520	23016520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.V134I	1.000	74	0%	49	53.1%	0	-	benign(0.183)	tolerated(1)	neutral(0.017)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
HM13	81502	genome.wustl.edu	37	20	30126012	30126012	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178581.1	+1	reviewed	p.L105	1.000	260	0%	182	44.5%	100	40%	-	-	-	HMMSmart_PSN,HMMPfam_Peptidase_A22B
POFUT1	23509	genome.wustl.edu	37	20	30818680	30818680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015352.1	+1	reviewed	p.P265L	1.000	53	0%	62	38.7%	54	53.7%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_O-FucT
BPIFB4	149954	genome.wustl.edu	37	20	31671282	31671282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182519.2	+1	validated	p.N93	0.030	78	0%	67	53.7%	0	-	-	-	-	NULL
BPIFA3	128861	genome.wustl.edu	37	20	31813020	31813020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178466.3	+1	validated	p.E168G	0.796	270	0%	168	44%	0	-	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
NECAB3	63941	genome.wustl.edu	37	20	32260221	32260221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031232.3	-1	reviewed	p.R46H	1.000	91	0%	59	42.4%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
NCOA6	23054	genome.wustl.edu	37	20	33329159	33329159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.A1634V	1.000	174	0.6%	160	42.5%	32	37.5%	benign(0)	tolerated(1)	-	NULL
CPNE1	8904	genome.wustl.edu	37	20	34214270	34214270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003915.4	-1	reviewed	p.A508T	1.000	113	0%	77	51.9%	238	49.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RBM12	10137	genome.wustl.edu	37	20	34242510	34242510	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006047.4	-1	reviewed	p.P245	0.836	162	0.6%	123	23.6%	61	29.5%	-	-	-	NULL
C20orf4	25980	genome.wustl.edu	37	20	34828214	34828214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015511.3	+1	predicted	p.E142K	0.948	107	0.9%	86	47.7%	57	45.6%	benign(0.004)	tolerated(0.25)	neutral(0.037)	HMMPfam_AAR2
MYL9	10398	genome.wustl.edu	37	20	35173421	35173421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006097.3	+1	reviewed	p.R45H	1.000	193	0%	163	44.2%	14	0%	benign(0.397)	deleterious(0.05)	deleterious(0.473)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
TGIF2	60436	genome.wustl.edu	37	20	35219749	35219749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021809.5	+1	reviewed	p.A210V	1.000	50	0%	37	16.2%	48	10.4%	benign(0.109)	tolerated(0.06)	neutral(0.331)	NULL
SOGA1	140710	genome.wustl.edu	37	20	35467712	35467712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199181.2	-1	validated	p.R36W	1.000	42	0%	24	25%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRC	6714	genome.wustl.edu	37	20	36026157	36026157	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005417.3	+1	reviewed	p.P253	0.000	56	0%	40	72.5%	8	25%	-	-	-	superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain
KIAA1755	85449	genome.wustl.edu	37	20	36852005	36852005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029864.1	-1	predicted	p.A735T	0.994	213	0%	158	47.5%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	superfamily_Spectrin repeat
RALGAPB	57148	genome.wustl.edu	37	20	37187086	37187086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020336.2	+1	validated	p.T1174M	1.000	202	0%	148	44.6%	10	70%	possibly_damaging(0.859)	tolerated(0.11)	deleterious(0.604)	superfamily_Rap/Ran-GAP (Pfam 02145)
ACTR5	79913	genome.wustl.edu	37	20	37400215	37400215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024855.3	+1	validated	p.S527L	0.824	109	0%	65	56.9%	27	44.4%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
L3MBTL1	26013	genome.wustl.edu	37	20	42168797	42168797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015478.5	+1	reviewed	p.T637M	0.026	116	0%	72	51.4%	2	100%	possibly_damaging(0.782)	tolerated(0.1)	deleterious(0.579)	NULL
HNF4A	3172	genome.wustl.edu	37	20	43030037	43030037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000457.3	+1	reviewed	p.D9N	1.000	119	0.8%	70	40%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	NULL
HNF4A	3172	genome.wustl.edu	37	20	43043177	43043177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000457.3	+1	reviewed	p.D175N	1.000	124	0%	90	48.9%	1	100%	possibly_damaging(0.541)	tolerated(0.08)	deleterious(0.483)	superfamily_Nuclear receptor ligand-binding domain
MMP9	4318	genome.wustl.edu	37	20	44640332	44640332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.A315T	0.999	32	0%	32	46.9%	5	0%	benign(0.119)	deleterious(0)	neutral(0.454)	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"
SULF2	55959	genome.wustl.edu	37	20	46365639	46365639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018837.3	-1	validated	p.G75W	1.000	239	0%	180	47.8%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
PREX1	57580	genome.wustl.edu	37	20	47266012	47266012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.G1044A	0.022	88	0%	64	31.2%	3	33.3%	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
SPATA2	9825	genome.wustl.edu	37	20	48522895	48522895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135773.1	-1	validated	p.R275Q	1.000	27	0%	21	57.1%	17	47%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
ADNP	23394	genome.wustl.edu	37	20	49508030	49508030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.G1074V	1.000	187	0%	142	39.4%	133	48.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50217872	50217872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006045.1	-1	validated	p.A1008T	0.999	162	0%	116	43.1%	35	51.4%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
BMP7	655	genome.wustl.edu	37	20	55777547	55777547	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433911	-1	known	p.G170S	0.005	27	0%	24	16.7%	0	-	-	-	-	HMMPfam_TGFb_propeptide
CTCFL	140690	genome.wustl.edu	37	20	56087731	56087731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080618.2	-1	reviewed	p.R470C	1.000	158	0%	87	12.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PMEPA1	56937	genome.wustl.edu	37	20	56227159	56227159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020182.3	-1	validated	p.A272T	0.997	71	0%	45	53.3%	19	31.5%	benign(0)	tolerated(1)	-	NULL
VAPB	9217	genome.wustl.edu	37	20	57016116	57016116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004738.3	+1	reviewed	p.R184W	0.998	262	0%	188	47.9%	35	37.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NPEPL1	79716	genome.wustl.edu	37	20	57287556	57287556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024663.3	+1	validated	p.A308T	1.000	238	0%	158	24.1%	17	17.6%	benign(0.11)	tolerated(0.27)	neutral(0.042)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
CDH4	1002	genome.wustl.edu	37	20	60485482	60485482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.A398V	0.023	85	0%	36	47.2%	0	-	benign(0.005)	tolerated(0.52)	neutral(0.009)	HMMPfam_Cadherin,superfamily_Cadherin
CDH4	1002	genome.wustl.edu	37	20	60511915	60511915	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.G889R	1.000	72	0%	35	34.3%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_Cadherin_C
TAF4	6874	genome.wustl.edu	37	20	60581663	60581663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003185.3	-1	reviewed	p.T709M	1.000	30	0%	20	75%	20	40%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
HRH3	11255	genome.wustl.edu	37	20	60794807	60794807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007232.2	-1	validated	p.L74F	1.000	34	0%	30	50%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LAMA5	3911	genome.wustl.edu	37	20	60898623	60898623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.D1985N	1.000	20	0%	10	60%	69	44.9%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
LAMA5	3911	genome.wustl.edu	37	20	60904036	60904036	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.P1437	0.025	25	0%	24	54.2%	65	60%	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61525857	61525857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.A827V	0.011	198	0.5%	157	47.1%	9	66.6%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61536912	61536912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266071	-1	known	p.A544T	0.000	5	0.000	11	0.818	44	31.8%	benign(0.164)	-	-	NULL
COL20A1	57642	genome.wustl.edu	37	20	61951496	61951496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020882.2	+1	validated	p.V1008I	0.746	13	0%	13	84.6%	0	-	benign(0.002)	tolerated(0.94)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
KCNQ2	3785	genome.wustl.edu	37	20	62065190	62065190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	p.E364K	1.000	136	0%	81	45.7%	0	-	probably_damaging(0.984)	tolerated(0.12)	deleterious(0.691)	NULL
PRIC285	85441	genome.wustl.edu	37	20	62195343	62195343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.R1611H	0.000	34	0%	35	45.7%	18	27.7%	benign(0.032)	tolerated(0.34)	neutral(0.025)	HMMPfam_RNB
GMEB2	26205	genome.wustl.edu	37	20	62221470	62221470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012384.3	-1	reviewed	p.A522V	0.197	9	0.000	11	0.455	15	73.3%	benign(0.033)	tolerated(0.1)	neutral(0.288)	NULL
ZNF512B	57473	genome.wustl.edu	37	20	62599275	62599275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020713.1	-1	provisional	p.R10H	1.000	113	0%	52	36.5%	9	22.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CXADR	1525	genome.wustl.edu	37	21	18919449	18919449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001338.3	+1	reviewed	p.Q50K	1.000	172	0%	123	49.6%	32	43.7%	benign(0.032)	tolerated(0.71)	neutral(0.003)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTG3	10950	genome.wustl.edu	37	21	18970965	18970965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130914.1	-1	reviewed	p.S207	0.000	162	0%	124	41.9%	56	58.9%	-	-	-	NULL
SCAF4	57466	genome.wustl.edu	37	21	33044112	33044112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.R1015Q	1.000	290	0%	215	46.5%	35	51.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33074171	33074171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.S173Y	1.000	264	0%	203	46.3%	32	50%	unknown(0)	tolerated(0.1)	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34003782	34003782	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.N1415	1.000	136	0%	98	37.8%	1	100%	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34924580	34924580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.R1015C	1.000	231	0%	198	14.1%	49	12.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITSN1	6453	genome.wustl.edu	37	21	35107496	35107496	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456489	+1	known	p.R51C	0.955	150	0%	103	43.7%	12	75%	-	-	-	NULL
KCNE1	3753	genome.wustl.edu	37	21	35821559	35821559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000219.3	-1	reviewed	p.T125M	0.000	16	0%	16	68.8%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_ISK_Channel
DOPEY2	9980	genome.wustl.edu	37	21	37617754	37617754	+	Missense_Mutation	SNP	C	C	T	rs147966121	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.S1159L	0.001	42	0%	25	36%	16	31.2%	benign(0.086)	tolerated(0.1)	neutral(0.293)	NULL
HLCS	3141	genome.wustl.edu	37	21	38269365	38269365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000411.5	-1	reviewed	p.G416S	0.989	157	0%	100	65%	6	83.3%	benign(0)	tolerated(0.9)	-	NULL
TTC3	7267	genome.wustl.edu	37	21	38538120	38538120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.R1202*	0.036	186	0%	107	40.2%	53	22.6%	-	-	-	superfamily_Spectrin,superfamily_SSF48452
ERG	2078	genome.wustl.edu	37	21	39762931	39762931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136154.1	-1	validated	p.R309H	1.000	293	0%	207	44.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MX1	4599	genome.wustl.edu	37	21	42813698	42813698	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144925.1	+1	reviewed	p.D262	0.928	236	0%	144	20.1%	51	17.6%	-	-	-	HMMPfam_Dynamin_M,HMMSmart_DYNc,superfamily_SSF52540
LOC100288232	100288232	genome.wustl.edu	37	21	43274682	43274682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343752.1	+1	model	p.A130T	0.000	30	0%	29	55.2%	1	100%	-	-	-	NULL
UBASH3A	53347	genome.wustl.edu	37	21	43838559	43838559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018961.2	+1	validated	p.T296M	0.994	85	0%	63	46%	0	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PDE9A	5152	genome.wustl.edu	37	21	44180951	44180951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002606.2	+1	reviewed	p.T340M	0.758	134	0%	105	45.7%	21	57.1%	benign(0.001)	tolerated(0.38)	neutral(0.018)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
TRAPPC10	7109	genome.wustl.edu	37	21	45502719	45502719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.H592N	0.160	248	0%	173	42.8%	26	50%	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
PWP2	5822	genome.wustl.edu	37	21	45548493	45548493	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005049.2	+1	validated	p.D857	0.389	68	0%	39	48.7%	59	40.6%	-	-	-	HMMPfam_PWP2
TSPEAR	54084	genome.wustl.edu	37	21	45947271	45947271	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144991.2	-1	provisional	p.S351	0.114	554	0.2%	408	44.1%	1	100%	-	-	-	NULL
SUMO3	6612	genome.wustl.edu	37	21	46226848	46226848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397898	-1	known	p.P127L	0.000	44	0%	43	41.9%	183	54%	unknown(0)	-	-	NULL
PTTG1IP	754	genome.wustl.edu	37	21	46271448	46271448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445724	-1	known	p.P88L	0.001	184	0%	148	45.3%	350	50%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	NULL
ITGB2	3689	genome.wustl.edu	37	21	46311770	46311770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.R456C	0.000	63	0%	44	45.5%	12	0%	possibly_damaging(0.946)	tolerated(0.05)	deleterious(0.736)	superfamily_SSF57196
COL18A1	80781	genome.wustl.edu	37	21	46876305	46876305	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130444.2	+1	reviewed	p.G287	0.000	49	0%	46	39.1%	1	100%	-	-	-	NULL
COL6A2	1292	genome.wustl.edu	37	21	47538942	47538942	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001849.3	+1	reviewed	e13-2	0.996	69	0%	46	37%	0	-	-	-	-	-
MCM3AP	8888	genome.wustl.edu	37	21	47663397	47663397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.R1760W	0.019	65	0%	36	66.7%	42	52.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47665030	47665030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.E1577K	1.000	83	0%	56	50%	52	32.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47695123	47695123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.E659K	1.000	121	0%	86	43%	21	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DIP2A	23181	genome.wustl.edu	37	21	47954584	47954584	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015151.3	+1	reviewed	p.A542	0.034	73	0%	45	51.1%	8	12.5%	-	-	-	superfamily_Acetyl-CoA synthetase-like
DIP2A	23181	genome.wustl.edu	37	21	47986589	47986589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015151.3	+1	reviewed	p.A1486T	1.000	159	1.3%	114	46.5%	14	42.8%	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
MICAL3	57553	genome.wustl.edu	37	22	18299536	18299536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.R1789C	0.971	44	0%	24	50%	16	43.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DGCR2	9993	genome.wustl.edu	37	22	19029425	19029425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005137.2	-1	reviewed	p.V352I	1.000	71	0%	47	48.9%	126	46.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
DGCR2	9993	genome.wustl.edu	37	22	19052453	19052453	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005137.2	-1	reviewed	p.L152	0.235	59	0%	36	33.3%	48	14.5%	-	-	-	HMMSmart_CLECT,superfamily_C-type_lectin_fold
TSSK2	23617	genome.wustl.edu	37	22	19119640	19119640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053006.4	+1	validated	p.C243Y	0.003	51	0%	40	50%	2	50%	benign(0)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DGCR14	8220	genome.wustl.edu	37	22	19121815	19121815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022719.2	-1	reviewed	p.P442L	0.998	278	0%	220	45.5%	41	46.3%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
DGCR14	8220	genome.wustl.edu	37	22	19125775	19125775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022719.2	-1	reviewed	p.P293H	1.000	93	0%	59	25.4%	20	15%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Es2
CLTCL1	8218	genome.wustl.edu	37	22	19213812	19213812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007098.3	-1	reviewed	p.A626V	1.000	278	0%	192	50.5%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
MRPL40	64976	genome.wustl.edu	37	22	19422320	19422320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003776.2	+1	reviewed	p.R67C	0.965	180	0%	168	49.4%	58	41.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MRP-L28
C22orf29	79680	genome.wustl.edu	37	22	19839194	19839194	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024627.5	-1	validated	p.P197	0.000	50	0%	32	40.6%	9	55.5%	-	-	-	NULL
TRMT2A	27037	genome.wustl.edu	37	22	20102877	20102877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022727.4	-1	validated	p.G268R	0.999	25	0%	18	55.6%	62	58%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
RIMBP3	85376	genome.wustl.edu	37	22	20457633	20457633	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015672.1	-1	validated	p.P1223	0.039	217	0%	168	29.8%	0	-	-	-	-	NULL
RIMBP3	85376	genome.wustl.edu	37	22	20458315	20458315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015672.1	-1	validated	p.P996H	0.993	271	0%	176	26.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Fibronectin type III
KLHL22	84861	genome.wustl.edu	37	22	20819385	20819385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032775.2	-1	validated	p.T291M	0.998	71	0%	55	29.1%	29	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose oxidase central domain
MED15	51586	genome.wustl.edu	37	22	20937419	20937419	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003891.1	+1	reviewed	p.M519fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SERPIND1	3053	genome.wustl.edu	37	22	21134170	21134170	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000185.3	+1	reviewed	p.S190	1.000	162	0%	129	41.1%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SNAP29	9342	genome.wustl.edu	37	22	21224794	21224794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004782.3	+1	reviewed	p.G136D	0.998	129	0%	88	48.9%	53	47.1%	possibly_damaging(0.731)	tolerated(0.54)	neutral(0.275)	NULL
PI4KAP2	375133	genome.wustl.edu	37	22	21842304	21842304	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450651	-1	known	p.V46	1.000	105	0%	64	31.2%	16	18.7%	-	-	-	NULL
CCDC116	164592	genome.wustl.edu	37	22	21989160	21989160	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152612.2	+1	provisional	p.R270*	0.000	39	0%	21	42.9%	0	-	-	-	-	NULL
CCDC116	164592	genome.wustl.edu	37	22	21989343	21989343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152612.2	+1	provisional	p.D331N	0.000	51	0%	21	66.7%	0	-	benign(0.073)	tolerated(0.29)	neutral(0.034)	NULL
LOC100287891	100287891	genome.wustl.edu	37	22	23241807	23241807	+	Missense_Mutation	SNP	C	C	T	rs190433268	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343769.1	-1	model	p.E102K	0.530	713	0%	496	42.7%	0	-	-	-	-	NULL
GNAZ	2781	genome.wustl.edu	37	22	23438544	23438544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002073.2	+1	reviewed	p.A221V	1.000	212	0%	136	53.7%	3	33.3%	possibly_damaging(0.878)	deleterious(0.01)	deleterious(0.748)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
DERL3	91319	genome.wustl.edu	37	22	24181129	24181129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135751.1	-1	reviewed	p.V16M	1.000	16	0%	11	45.5%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_DER1
SLC2A11	66035	genome.wustl.edu	37	22	24226125	24226125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407566	+1	known	p.R101H	0.000	184	0%	93	36.6%	3	66.6%	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
ADORA2A	135	genome.wustl.edu	37	22	24837244	24837244	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000675.4	+1	reviewed	p.P342	0.000	35	0%	23	43.5%	0	-	-	-	-	NULL
KREMEN1	83999	genome.wustl.edu	37	22	29534665	29534665	+	Missense_Mutation	SNP	G	G	A	rs141945870	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032045.4	+1	reviewed	p.E340K	0.995	172	0%	135	50.4%	3	33.3%	probably_damaging(0.958)	tolerated(0.1)	deleterious(0.688)	NULL
RHBDD3	25807	genome.wustl.edu	37	22	29659833	29659833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012265.1	-1	provisional	p.G175S	1.000	28	0%	22	45.5%	74	47.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rhomboid
NEFH	4744	genome.wustl.edu	37	22	29885534	29885534	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021076.3	+1	reviewed	p.P635	0.000	297	0%	226	44.7%	0	-	-	-	-	HMMPfam_DUF1388
OSBP2	23762	genome.wustl.edu	37	22	31285622	31285622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030758.3	+1	reviewed	p.P541L	1.000	92	0%	74	45.9%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
SMTN	6525	genome.wustl.edu	37	22	31484539	31484539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134270.1	+1	reviewed	p.R81W	0.040	30	0%	20	45%	2	50%	unknown(0)	deleterious(0)	-	NULL
PRR14L	253143	genome.wustl.edu	37	22	32108443	32108443	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000330495	-1	known	p.P97T	0.043	232	0%	164	32.9%	18	27.7%	-	-	-	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32198757	32198757	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014662.2	+1	validated	p.P338	0.037	398	0%	264	43.6%	5	60%	-	-	-	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32210985	32210985	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014662.2	+1	validated	p.R485*	1.000	118	0%	73	15.1%	7	14.2%	-	-	-	NULL
SYN3	8224	genome.wustl.edu	37	22	32937657	32937657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003490.3	-1	reviewed	p.V273M	1.000	368	0%	291	47.8%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
HMOX1	3162	genome.wustl.edu	37	22	35789530	35789530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002133.1	+1	reviewed	p.R269Q	0.575	255	0%	182	48.9%	9	11.1%	benign(0.405)	tolerated(0.17)	neutral(0.190)	NULL
APOL2	23780	genome.wustl.edu	37	22	36624251	36624251	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030882.2	-1	reviewed	p.H71	0.000	73	0%	52	40.4%	70	57.1%	-	-	-	HMMPfam_ApoL
C1QTNF6	114904	genome.wustl.edu	37	22	37581375	37581375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031910.3	-1	validated	p.R58W	0.999	32	0%	20	60%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CARD10	29775	genome.wustl.edu	37	22	37891895	37891895	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014550.3	-1	reviewed	p.C725	0.929	88	0%	58	41.4%	61	55.7%	-	-	-	NULL
C22orf23	84645	genome.wustl.edu	37	22	38340511	38340511	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032561.2	-1	predicted	p.I165	0.983	251	0%	168	43.5%	11	72.7%	-	-	-	HMMPfam_UPF0193
SOX10	6663	genome.wustl.edu	37	22	38379425	38379425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006941.3	-1	reviewed	p.A123T	1.000	25	0%	21	38.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
SUN2	25777	genome.wustl.edu	37	22	39146290	39146290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015374.1	-1	validated	p.R154W	0.000	29	0%	26	57.7%	46	36.9%	unknown(0)	deleterious(0.03)	-	NULL
CBX7	23492	genome.wustl.edu	37	22	39530585	39530585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175709.3	-1	validated	p.R140H	1.000	37	0%	23	56.5%	3	100%	benign(0.082)	deleterious(0.02)	neutral(0.389)	NULL
TAB1	10454	genome.wustl.edu	37	22	39826209	39826209	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006116.2	+1	reviewed	p.S499	0.903	94	0%	73	49.3%	44	43.1%	-	-	-	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40711300	40711300	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446273	+1	known	p.I1250T	1.000	283	0%	183	49.7%	26	61.5%	-	-	-	NULL
ADSL	158	genome.wustl.edu	37	22	40742683	40742683	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000026.2	+1	reviewed	p.Q41*	1.000	46	0%	21	52.4%	20	10%	-	-	-	HMMPfam_Lyase_1,superfamily_L-aspartase-like
MKL1	57591	genome.wustl.edu	37	22	40859267	40859267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422851	-1	known	p.R16C	1.000	164	0%	108	46.3%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RPEL
XPNPEP3	63929	genome.wustl.edu	37	22	41305142	41305142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022098.2	+1	validated	p.R291Q	1.000	393	0%	313	40.6%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
L3MBTL2	83746	genome.wustl.edu	37	22	41621037	41621037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031488.4	+1	validated	p.L440M	0.997	425	0%	285	50.2%	26	46.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
ACO2	50	genome.wustl.edu	37	22	41920900	41920900	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098.2	+1	reviewed	p.T511	0.164	104	1%	74	44.6%	184	50.5%	-	-	-	superfamily_Aconitase_N
EFCAB6	64800	genome.wustl.edu	37	22	44107499	44107499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.S296L	0.000	113	0%	71	47.9%	1	0%	benign(0.059)	tolerated(0.23)	neutral(0.045)	superfamily_EF-hand
PRR5-ARHGAP8	553158	genome.wustl.edu	37	22	45204215	45204215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181334.4	+1	reviewed	p.V102I	1.000	130	0%	132	47.7%	17	47%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_SEC14,superfamily_CRAL_TRIO_C
PHF21B	112885	genome.wustl.edu	37	22	45309959	45309959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138415.3	-1	validated	p.R192C	0.001	43	0%	17	52.9%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
SELO	83642	genome.wustl.edu	37	22	50644929	50644929	+	Silent	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031454.1	+1	reviewed	p.R246	0.328	140	0%	80	45%	32	68.7%	-	-	-	HMMPfam_UPF0061
TUBGCP6	85378	genome.wustl.edu	37	22	50671749	50671749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020461.3	-1	reviewed	p.C371Y	1.000	27	0%	12	41.7%	11	63.6%	possibly_damaging(0.929)	tolerated(1)	neutral(0.376)	HMMPfam_Spc97_Spc98
MAPK11	5600	genome.wustl.edu	37	22	50703786	50703786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002751.5	-1	reviewed	p.V327I	0.030	57	0%	62	40.3%	9	66.6%	benign(0)	deleterious(0.05)	neutral(0.345)	superfamily_Protein kinase-like (PK-like)
PLXNB2	23654	genome.wustl.edu	37	22	50719370	50719370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.D1266N	1.000	112	0%	64	51.6%	460	46%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SBF1	6305	genome.wustl.edu	37	22	50898711	50898711	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002972.2	-1	validated	p.D1091	0.980	207	0.5%	112	38.4%	32	31.2%	-	-	-	NULL
ACR	49	genome.wustl.edu	37	22	51178320	51178320	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097.2	+1	reviewed	p.P160	0.000	77	0%	58	50%	2	50%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ENSG00000211459	0	genome.wustl.edu	37	MT	1147	1147	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389680	+1	known	NULL	NULL	5	0.000	6	1.000	1960	98.8%	-	-	-	-
ENSG00000210176	0	genome.wustl.edu	37	MT	12166	12166	+	RNA	SNP	T	T	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387441	+1	novel	NULL	NULL	6	0.000	5	1.000	78	97.4%	-	-	-	-
GTPBP6	8225	genome.wustl.edu	37	X	221755	221755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429643	-1	known	p.L307I	1.000	560	0%	336	44.3%	55	34.5%	possibly_damaging(0.832)	tolerated(0.34)	neutral(0.340)	NULL
PPP2R3B	28227	genome.wustl.edu	37	X	299399	299399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013239.4	-1	reviewed	p.A506V	1.000	200	0%	145	45.5%	32	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP17A	8227	genome.wustl.edu	37	X	1712942	1712942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005088.2	+1	validated	p.R196Q	0.992	101	0%	59	44.1%	33	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBED1	9189	genome.wustl.edu	37	X	2407160	2407160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004729.3	-1	reviewed	p.R534Q	0.000	53	0%	36	50%	28	60.7%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
ZBED1	9189	genome.wustl.edu	37	X	2407351	2407351	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004729.3	-1	reviewed	p.N470	1.000	204	0%	162	40.1%	30	43.3%	-	-	-	NULL
PRKX	5613	genome.wustl.edu	37	X	3530280	3530280	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005044.4	-1	reviewed	p.P346	0.012	168	0%	139	38.8%	56	41%	-	-	-	HMMSmart_S_TK_X
SHROOM2	357	genome.wustl.edu	37	X	9900563	9900563	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001649.2	+1	reviewed	p.G1080	0.000	43	0%	26	50%	5	100%	-	-	-	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12734690	12734690	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014728.3	+1	reviewed	p.E704	0.056	54	0%	64	54.7%	0	-	-	-	-	NULL
TXLNG	55787	genome.wustl.edu	37	X	16859706	16859706	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018360.2	+1	reviewed	p.A468	0.001	154	0%	125	47.2%	14	28.5%	-	-	-	NULL
PHKA2	5256	genome.wustl.edu	37	X	18924631	18924631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	p.R930W	0.920	51	0%	33	39.4%	16	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB
MAP3K15	389840	genome.wustl.edu	37	X	19387274	19387274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001671.3	-1	validated	p.A630V	0.000	90	1.1%	49	46.9%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
SMS	6611	genome.wustl.edu	37	X	21985431	21985431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004595.2	+1	reviewed	p.G56D	1.000	184	0%	141	53.2%	139	98.5%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
ENSG00000249566	0	genome.wustl.edu	37	X	23094916	23094916	+	RNA	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508288	-1	novel	NULL	0.003	266	0%	247	44.1%	13	0%	-	-	-	-
ZFX	7543	genome.wustl.edu	37	X	24229432	24229432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003410.3	+1	reviewed	p.R786Q	1.000	85	0%	75	46.7%	16	62.5%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DCAF8L2	347442	genome.wustl.edu	37	X	27765469	27765469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.P153T	0.000	43	0%	26	50%	0	-	-	-	-	superfamily_WD40 repeat-like
DCAF8L2	347442	genome.wustl.edu	37	X	27765667	27765667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.R219C	0.014	123	0%	88	46.6%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FAM47B	170062	genome.wustl.edu	37	X	34962518	34962518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.R524W	0.000	206	0.5%	156	39.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
BCOR	54880	genome.wustl.edu	37	X	39923700	39923700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.R1131W	1.000	110	0%	48	45.8%	19	73.6%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
BCOR	54880	genome.wustl.edu	37	X	39934047	39934047	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.A184	1.000	209	0%	134	20.1%	7	42.8%	-	-	-	NULL
KDM6A	7403	genome.wustl.edu	37	X	44879905	44879905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021140.2	+1	reviewed	p.R165Q	1.000	392	0%	296	43.6%	6	50%	possibly_damaging(0.921)	tolerated(0.13)	deleterious(0.623)	superfamily_SSF48452
ZNF157	7712	genome.wustl.edu	37	X	47272965	47272965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003446.3	+1	reviewed	p.R498H	0.000	80	0%	59	59.3%	0	-	benign(0.056)	tolerated(0.15)	neutral(0.244)	NULL
SYN1	6853	genome.wustl.edu	37	X	47435995	47435995	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006950.3	-1	reviewed	p.V294	0.309	200	0%	145	52.4%	0	-	-	-	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
CFP	5199	genome.wustl.edu	37	X	47489030	47489030	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145252.1	-1	reviewed	p.S40	0.000	55	0%	24	37.5%	0	-	-	-	-	NULL
SLC38A5	92745	genome.wustl.edu	37	X	48325240	48325240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033518.2	-1	validated	p.A89T	0.993	157	0%	96	42.7%	0	-	benign(0.009)	tolerated(0.14)	neutral(0.250)	HMMPfam_Aa_trans
MAGIX	79917	genome.wustl.edu	37	X	49022529	49022529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024859.2	+1	validated	p.R266W	0.005	37	0%	21	47.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP4	8852	genome.wustl.edu	37	X	49958703	49958703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.V221I	1.000	386	0.3%	321	48.6%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_RII_binding_1,HMMSmart_SM00807
CXorf67	340602	genome.wustl.edu	37	X	51150443	51150443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342995	+1	known	p.S192L	0.000	30	0%	30	30%	0	-	probably_damaging(0.974)	tolerated(0.31)	neutral(0.443)	NULL
NUDT11	55190	genome.wustl.edu	37	X	51239180	51239180	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375992	-1	known	p.S39	0.993	142	0%	122	47.5%	0	-	-	-	-	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
PHF8	23133	genome.wustl.edu	37	X	53965674	53965674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015107.2	-1	reviewed	p.R998C	1.000	290	0%	174	17.2%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGD1	2245	genome.wustl.edu	37	X	54475638	54475638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004463.2	-1	reviewed	p.R738C	0.999	230	0%	114	57.9%	12	100%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
TRO	7216	genome.wustl.edu	37	X	54956374	54956374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.V1073I	0.000	39	0%	28	28.6%	4	75%	benign(0.094)	tolerated(0.53)	neutral(0.014)	NULL
APEX2	27301	genome.wustl.edu	37	X	55033665	55033665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.R452W	0.048	70	0%	52	38.5%	84	98.8%	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	NULL
ARHGEF9	23229	genome.wustl.edu	37	X	62875390	62875390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015185.2	-1	reviewed	p.Q428H	1.000	734	0%	590	41.7%	5	100%	benign(0.004)	deleterious(0.03)	neutral(0.364)	superfamily_SSF50729
FAM123B	139285	genome.wustl.edu	37	X	63410349	63410349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152424.3	-1	reviewed	p.W940R	0.963	109	0%	73	47.9%	7	14.2%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
PJA1	64219	genome.wustl.edu	37	X	68381347	68381347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145119.3	-1	reviewed	p.E579K	0.772	97	0%	95	49.5%	52	0%	possibly_damaging(0.942)	tolerated(0.06)	deleterious(0.710)	superfamily_RING/U-box
FAM155B	27112	genome.wustl.edu	37	X	68725269	68725269	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015686.2	+1	validated	p.A48	0.998	14	0%	14	28.6%	1	100%	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70348198	70348198	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.L1088	0.980	306	0%	208	17.8%	29	0%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70608189	70608189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.R864W	1.000	143	0%	100	48%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CITED1	4435	genome.wustl.edu	37	X	71521945	71521945	+	Silent	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144885.1	-1	reviewed	p.G96	0.654	305	0%	185	36.2%	0	-	-	-	-	HMMPfam_CITED
HDAC8	55869	genome.wustl.edu	37	X	71708853	71708853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018486.2	-1	reviewed	p.R223W	1.000	226	0%	166	45.8%	14	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
PHKA1	5255	genome.wustl.edu	37	X	71846860	71846860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002637.3	-1	reviewed	p.A585V	1.000	490	0%	380	21.8%	1	0%	benign(0.043)	tolerated(0.64)	neutral(0.005)	HMMPfam_PHK_AB
ATRX	546	genome.wustl.edu	37	X	76938907	76938907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.G614D	0.000	96	0%	69	62.3%	9	88.8%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79945475	79945475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.R1240Q	1.000	220	0%	175	48.6%	7	85.7%	possibly_damaging(0.525)	tolerated(0.09)	deleterious(0.473)	HMMSmart_SM00297,superfamily_Bromodomain
RPS6KA6	27330	genome.wustl.edu	37	X	83402051	83402051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014496.4	-1	reviewed	p.R119Q	1.000	419	0%	250	44%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SYTL4	94121	genome.wustl.edu	37	X	99946120	99946120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129896.2	-1	reviewed	p.S209L	0.565	303	0%	201	43.8%	2	100%	benign(0.344)	tolerated(0.35)	neutral(0.129)	HMMPfam_RPH3A_effector
NOX1	27035	genome.wustl.edu	37	X	100104924	100104924	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	e10-1	1.000	181	0%	142	44.4%	0	-	-	-	-	-
ARMCX2	9823	genome.wustl.edu	37	X	100911496	100911496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.R360H	0.546	169	0%	94	52.1%	87	0%	possibly_damaging(0.705)	tolerated(0.13)	deleterious(0.506)	superfamily_ARM-type_fold
FAM199X	139231	genome.wustl.edu	37	X	103434305	103434305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207318.2	+1	validated	p.R338Q	1.000	152	0%	96	52.1%	25	0%	benign(0.392)	deleterious(0.03)	deleterious(0.490)	NULL
ESX1	80712	genome.wustl.edu	37	X	103499160	103499160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153448.3	-1	reviewed	p.V61I	0.000	112	0%	70	47.1%	0	-	benign(0.35)	tolerated(0.53)	neutral(0.118)	NULL
SERPINA7	6906	genome.wustl.edu	37	X	105277494	105277494	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000354.5	-1	reviewed	p.A415	0.000	173	0%	110	24.5%	0	-	-	-	-	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105450110	105450110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000337685	+1	known	p.A229T	0.000	239	0%	195	43.1%	0	-	benign(0.061)	tolerated(0.59)	neutral(0.009)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106083300	106083300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017752.2	+1	validated	p.Q459P	1.000	256	0%	191	45.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Ypt/Rab-GAP domain of gyp1p
MID2	11043	genome.wustl.edu	37	X	107084467	107084467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.R191Q	1.000	77	0%	43	58.1%	1	100%	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	HMMPfam_zf-B_box,HMMSmart_SM00336
IRS4	8471	genome.wustl.edu	37	X	107978633	107978633	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.C314*	0.577	130	0%	82	39%	0	-	-	-	-	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
RGAG1	57529	genome.wustl.edu	37	X	109697530	109697530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.L1229I	0.074	145	0%	116	47.4%	0	-	possibly_damaging(0.945)	tolerated(0.34)	neutral(0.413)	NULL
PAK3	5063	genome.wustl.edu	37	X	110366367	110366367	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128168.1	+1	reviewed	p.P12	1.000	239	0%	194	51%	0	-	-	-	-	NULL
ALG13	79868	genome.wustl.edu	37	X	111002971	111002971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.P1053L	0.003	231	0%	143	42%	22	0%	benign(0.427)	tolerated(0.16)	neutral(0.199)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114425890	114425890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.R629H	0.036	91	0%	75	42.7%	0	-	benign(0.041)	tolerated(0.22)	neutral(0.045)	NULL
LUZP4	51213	genome.wustl.edu	37	X	114536677	114536677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016383.3	+1	validated	p.R71H	0.000	191	0%	201	40.8%	0	-	unknown(0)	-	-	NULL
NKAP	79576	genome.wustl.edu	37	X	119072723	119072723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.W146*	1.000	143	0%	90	48.9%	13	0%	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122820444	122820444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.P241L	1.000	234	0%	166	49.4%	9	100%	benign(0.055)	tolerated(0.36)	neutral(0.024)	NULL
STAG2	10735	genome.wustl.edu	37	X	123181311	123181311	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.R259*	1.000	122	0%	103	58.3%	5	100%	-	-	-	HMMPfam_STAG,superfamily_ARM-type_fold
XPNPEP2	7512	genome.wustl.edu	37	X	128886196	128886196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003399.5	+1	reviewed	p.M298V	0.264	225	0%	167	46.7%	0	-	benign(0.012)	tolerated(0.63)	neutral(0.004)	NULL
XPNPEP2	7512	genome.wustl.edu	37	X	128894500	128894500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003399.5	+1	reviewed	p.R481C	0.219	336	0%	200	51%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
UTP14A	10813	genome.wustl.edu	37	X	129060301	129060301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006649.3	+1	reviewed	p.A677T	0.007	156	0.6%	90	58.9%	42	0%	benign(0.3)	tolerated(0.1)	neutral(0.379)	HMMPfam_Utp14
ZNF280C	55609	genome.wustl.edu	37	X	129349773	129349773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017666.4	-1	validated	p.K610N	0.908	420	0%	305	12.1%	7	14.2%	benign(0.422)	deleterious(0.04)	deleterious(0.486)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130408074	130408074	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.W1286*	1.000	400	0%	307	47.6%	1	100%	-	-	-	NULL
RAP2C	57826	genome.wustl.edu	37	X	131348204	131348204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021183.3	-1	provisional	p.V182I	1.000	166	0%	124	42.7%	13	92.3%	benign(0.002)	tolerated(1)	-	NULL
HS6ST2	90161	genome.wustl.edu	37	X	131763080	131763080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077188.1	-1	reviewed	p.R370Q	1.000	150	0%	120	53.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HS6ST
SAGE1	55511	genome.wustl.edu	37	X	134991797	134991797	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018666.2	+1	reviewed	e13-1	0.031	201	0%	147	21.8%	0	-	-	-	-	-
GPR112	139378	genome.wustl.edu	37	X	135429006	135429006	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.V1047	0.001	259	0%	171	43.9%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135429360	135429360	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.T1165	0.000	237	0%	201	54.2%	0	-	-	-	-	NULL
HTATSF1	27336	genome.wustl.edu	37	X	135581912	135581912	+	Silent	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014500.4	+1	reviewed	p.K114	0.960	227	0.4%	163	43.6%	43	0%	-	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140953339	140953339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.G69E	0.000	450	0%	302	45%	0	-	unknown(0)	-	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144906070	144906070	+	Silent	SNP	A	A	G	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.V709	0.994	100	0%	69	47.8%	0	-	-	-	-	NULL
MAGEA12	4111	genome.wustl.edu	37	X	151900076	151900076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005367.5	-1	reviewed	p.P242H	0.021	413	0%	296	44.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
MAGEA3	4102	genome.wustl.edu	37	X	151935539	151935539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005362.3	-1	reviewed	p.A210T	0.000	448	0%	299	44.1%	0	-	possibly_damaging(0.559)	deleterious(0.01)	deleterious(0.596)	HMMPfam_MAGE
BCAP31	10134	genome.wustl.edu	37	X	152969516	152969516	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139457.1	-1	reviewed	p.Q192	1.000	155	0%	118	43.2%	284	0%	-	-	-	HMMPfam_Bap31
TMEM187	8269	genome.wustl.edu	37	X	153248166	153248166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003492.2	+1	reviewed	p.R218H	0.000	144	0%	120	46.7%	57	49.1%	benign(0.004)	tolerated(0.55)	neutral(0.007)	NULL
TKTL1	8277	genome.wustl.edu	37	X	153539311	153539311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012253.3	+1	validated	p.G159*	1.000	271	0%	189	41.3%	0	-	-	-	-	HMMPfam_Transketolase_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
FLNA	2316	genome.wustl.edu	37	X	153581679	153581679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.R2003C	1.000	74	0%	58	31%	447	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153590869	153590869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.R828C	1.000	95	0%	72	51.4%	262	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153599478	153599478	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.Q46*	1.000	78	0%	33	24.2%	126	56.3%	-	-	-	PatternScan_ACTININ_1,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
RPL10	6134	genome.wustl.edu	37	X	153627724	153627724	+	Silent	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006013.3	+1	reviewed	p.C23	1.000	243	0%	174	44.3%	1487	0%	-	-	-	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e
CTAG2	30848	genome.wustl.edu	37	X	153880610	153880610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020994.3	-1	reviewed	p.E189K	0.000	259	0%	191	39.8%	0	-	unknown(0)	deleterious(0)	-	NULL
DKC1	1736	genome.wustl.edu	37	X	154003515	154003515	+	Silent	SNP	G	G	A	rs189466923	by1000genomes	TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001363.3	+1	reviewed	p.P435	0.000	145	0%	132	38.6%	87	95.4%	-	-	-	NULL
F8	2157	genome.wustl.edu	37	X	154157159	154157159	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.Q1636*	0.028	405	0%	302	46.7%	0	-	-	-	-	NULL
TMLHE	55217	genome.wustl.edu	37	X	154754197	154754197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A167-01A-11D-A12J-09	TCGA-D1-A167-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018196.3	-1	reviewed	p.R93H	0.997	213	0%	174	43.7%	68	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
