Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UBR4	23352	genome.wustl.edu	37	1	19481946	19481946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.E2097K	1.000	86	0%	67	46.3%	7	100%	probably_damaging(0.971)	tolerated(0.81)	neutral(0.413)	superfamily_ARM repeat
MYOM3	127294	genome.wustl.edu	37	1	24411093	24411093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152372.3	-1	validated	p.R612K	1.000	256	0%	161	62.1%	1	100%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PPCS	79717	genome.wustl.edu	37	1	42925482	42925482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024664.2	+1	validated	p.S274L	1.000	168	0%	171	38.6%	10	70%	possibly_damaging(0.926)	tolerated(0.14)	deleterious(0.624)	HMMPfam_DFP,superfamily_DNA/pantothenate-metab_flavo_C
PARS2	25973	genome.wustl.edu	37	1	55224179	55224179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152268.3	-1	validated	p.A219V	0.973	49	0%	39	35.9%	10	70%	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
DOCK7	85440	genome.wustl.edu	37	1	62995032	62995032	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454575	-1	known	p.S404*	1.000	205	0%	228	38.2%	5	60%	benign(0)	tolerated(1)	-	NULL
LHX8	431707	genome.wustl.edu	37	1	75614349	75614349	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001933.1	+1	validated	p.L264	1.000	283	0%	325	36%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
KCNC4	3749	genome.wustl.edu	37	1	110754258	110754258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004978.3	+1	reviewed	p.R46Q	1.000	50	0%	38	28.9%	3	66.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
PDE4DIP	9659	genome.wustl.edu	37	1	144994696	144994696	+	Silent	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.L12	1.000	270	0%	218	10.6%	2	0%	-	-	-	HMMPfam_Microtub_assoc
BCL9	607	genome.wustl.edu	37	1	147084775	147084775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.Q49H	1.000	86	0%	96	40.6%	1	100%	benign(0.139)	tolerated(0.59)	neutral(0.017)	NULL
BNIPL	149428	genome.wustl.edu	37	1	151010106	151010106	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138278.3	+1	validated	p.L35	1.000	417	0%	453	35.5%	0	-	-	-	-	NULL
BNIPL	149428	genome.wustl.edu	37	1	151018277	151018277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138278.3	+1	validated	p.R286W	0.997	129	0%	156	50.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
POGZ	23126	genome.wustl.edu	37	1	151380590	151380590	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.A787	1.000	223	0%	211	37.9%	25	60%	-	-	-	HMMSmart_SM00355
TCHH	7062	genome.wustl.edu	37	1	152085190	152085190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.R168H	0.071	352	0%	290	36.9%	0	-	unknown(0)	-	-	NULL
KCNN3	3782	genome.wustl.edu	37	1	154842430	154842430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002249.4	-1	reviewed	p.S4F	1.000	30	0%	12	33.3%	0	-	unknown(0)	deleterious(0)	-	NULL
DPM3	54344	genome.wustl.edu	37	1	155112591	155112591	+	Silent	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018973.3	-1	reviewed	p.P72	0.996	27	0%	13	61.5%	328	32.6%	-	-	-	HMMPfam_DPM3
NOS1AP	9722	genome.wustl.edu	37	1	162313728	162313728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014697.2	+1	reviewed	p.G186E	0.906	136	0%	130	33.1%	12	41.6%	possibly_damaging(0.698)	tolerated(0.06)	deleterious(0.574)	NULL
NOS1AP	9722	genome.wustl.edu	37	1	162324992	162324992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014697.2	+1	reviewed	p.G204A	0.985	82	0%	69	23.2%	10	60%	benign(0.006)	tolerated(0.53)	neutral(0.007)	NULL
DARS2	55157	genome.wustl.edu	37	1	173808504	173808504	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018122.4	+1	reviewed	e10-1	1.000	232	0%	228	33.3%	0	-	-	-	-	-
CRB1	23418	genome.wustl.edu	37	1	197404606	197404606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201253.1	+1	reviewed	p.G1205R	1.000	112	0%	86	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
KIF21B	23046	genome.wustl.edu	37	1	200946397	200946397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.S1410L	0.003	100	0%	98	36.7%	14	21.4%	benign(0.059)	deleterious(0.01)	neutral(0.410)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
ELF3	1999	genome.wustl.edu	37	1	201982359	201982359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114309.1	+1	validated	p.K246N	0.863	117	0%	90	40%	950	46.7%	probably_damaging(0.998)	tolerated(0.4)	deleterious(0.490)	"superfamily_""Winged helix"" DNA-binding domain"
SIPA1L2	57568	genome.wustl.edu	37	1	232649794	232649794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.S431L	0.998	124	0%	116	31%	3	0%	benign(0.194)	deleterious(0.02)	neutral(0.401)	NULL
SLC35F3	148641	genome.wustl.edu	37	1	234452371	234452371	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173508.2	+1	provisional	p.I284	0.657	82	0%	60	46.7%	0	-	-	-	-	HMMPfam_DUF6,superfamily_SSF103481
COLEC11	78989	genome.wustl.edu	37	2	3660961	3660961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.T64M	0.938	46	0%	41	29.3%	0	-	possibly_damaging(0.861)	tolerated(0.06)	deleterious(0.655)	NULL
FAM59B	150946	genome.wustl.edu	37	2	26399236	26399236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380681	+1	known	p.E159K	1.000	45	0%	61	45.9%	6	33.3%	probably_damaging(0.985)	tolerated(0.17)	deleterious(0.491)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27804822	27804822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032266.3	+1	validated	p.E1795K	0.006	197	0%	181	34.8%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
DHX57	90957	genome.wustl.edu	37	2	39085841	39085841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198963.1	-1	provisional	p.E517K	1.000	224	0%	228	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP4K3	8491	genome.wustl.edu	37	2	39515382	39515382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003618.2	-1	reviewed	p.E452K	1.000	471	0%	442	33.7%	4	75%	benign(0.042)	tolerated(0.38)	neutral(0.020)	superfamily_Protein kinase-like (PK-like)
AFTPH	54812	genome.wustl.edu	37	2	64794719	64794719	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203437.2	+1	validated	p.E653	1.000	172	0%	210	38.1%	3	66.6%	-	-	-	NULL
PPP3R1	5534	genome.wustl.edu	37	2	68413769	68413769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000945.3	-1	validated	p.Y99C	1.000	208	0%	281	35.2%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
ARHGAP25	9938	genome.wustl.edu	37	2	69049695	69049695	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000497259	+1	known	p.Q334*	0.009	76	0%	78	33.3%	7	0%	benign(0.086)	tolerated(0.24)	neutral(0.044)	NULL
PDCL3	79031	genome.wustl.edu	37	2	101186146	101186146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024065.4	+1	validated	p.E111K	0.826	217	0%	183	29%	9	44.4%	benign(0.005)	tolerated(0.77)	neutral(0.001)	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
TUBA3E	112714	genome.wustl.edu	37	2	130953801	130953801	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207312.2	-1	validated	p.F49	1.000	315	0%	239	36.4%	0	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
DPP4	1803	genome.wustl.edu	37	2	162862305	162862305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001935.3	-1	reviewed	p.E668K	1.000	272	0%	321	30.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
SCN9A	6335	genome.wustl.edu	37	2	167168155	167168155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.E38K	0.994	237	0%	214	41.1%	0	-	possibly_damaging(0.882)	tolerated(0.28)	neutral(0.376)	NULL
TTN	7273	genome.wustl.edu	37	2	179455115	179455115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R17876H	1.000	265	0%	190	38.9%	0	-	possibly_damaging(0.737)	-	-	HMMPfam_fn3,HMMSmart_SM00060
UNC80	285175	genome.wustl.edu	37	2	210685159	210685159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.R696K	1.000	336	0%	294	33.7%	0	-	benign(0.176)	tolerated(0.53)	neutral(0.024)	NULL
UNC80	285175	genome.wustl.edu	37	2	210840973	210840973	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.I2840	1.000	213	0%	164	41.5%	0	-	-	-	-	NULL
COL4A4	1286	genome.wustl.edu	37	2	227959001	227959001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.M403I	0.867	76	0%	70	38.6%	0	-	benign(0.05)	tolerated(0.33)	neutral(0.027)	HMMPfam_Collagen
DNER	92737	genome.wustl.edu	37	2	230450669	230450669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139072.3	-1	validated	p.S251F	1.000	159	0%	124	25.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NEU2	4759	genome.wustl.edu	37	2	233897502	233897502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005383.2	+1	reviewed	p.R41W	0.950	63	0%	54	46.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Sialidase
RBM44	375316	genome.wustl.edu	37	2	238726205	238726205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080504.2	+1	validated	p.E216*	0.001	29	0%	41	26.8%	0	-	-	-	-	NULL
PASK	23178	genome.wustl.edu	37	2	242072410	242072410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.V448I	0.000	112	0%	84	41.7%	20	45%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
SETD5	55209	genome.wustl.edu	37	3	9483910	9483910	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.S353*	1.000	256	0%	293	30%	40	40%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ATP2B2	491	genome.wustl.edu	37	3	10379872	10379872	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.R1136	1.000	30	0%	32	53.1%	0	-	-	-	-	NULL
PLCD1	5333	genome.wustl.edu	37	3	38052853	38052853	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130964.1	-1	validated	p.I235	0.996	46	0%	26	38.5%	10	50%	-	-	-	HMMPfam_efhand_like,superfamily_SSF47473
CXCR6	10663	genome.wustl.edu	37	3	45988223	45988223	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006564.1	+1	validated	p.L84	0.949	317	0%	247	34%	10	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNF123	63891	genome.wustl.edu	37	3	49735317	49735317	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022064.2	+1	reviewed	e5-1	1.000	169	0%	143	34.3%	1	100%	-	-	-	-
LRIG1	26018	genome.wustl.edu	37	3	66457841	66457841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015541.2	-1	validated	p.R337H	0.975	61	0%	41	36.6%	56	53.5%	benign(0.027)	tolerated(0.37)	neutral(0.021)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
ABI3BP	25890	genome.wustl.edu	37	3	100621498	100621498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015429.3	-1	validated	p.P105T	0.990	207	0%	255	27.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TMPRSS7	344805	genome.wustl.edu	37	3	111799921	111799921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042575.2	+1	validated	p.S715F	1.000	356	0%	373	30.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	112005587	112005587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.V18L	0.426	151	0%	203	34%	0	-	benign(0.219)	tolerated(0.11)	neutral(0.293)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113393719	113393719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.E3Q	1.000	471	0%	580	37.4%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
ATP6V1A	523	genome.wustl.edu	37	3	113507614	113507614	+	Silent	SNP	A	A	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001690.2	+1	reviewed	p.T257	0.637	264	0%	268	31.7%	27	40.7%	-	-	-	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
IGSF11	152404	genome.wustl.edu	37	3	118647390	118647390	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015887.1	-1	validated	p.G130	1.000	171	0%	126	30.2%	9	55.5%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
STXBP5L	9515	genome.wustl.edu	37	3	121097727	121097727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014980.2	+1	validated	p.T805A	1.000	93	0%	118	40.7%	0	-	benign(0.004)	tolerated(0.77)	neutral(0.001)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	G	A	rs121913283		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.M1043I	1.000	171	0%	152	36.8%	4	25%	benign(0.256)	deleterious(0.02)	neutral(0.410)	HMMSmart_PI3Kc,superfamily_Kinase_like
TTC14	151613	genome.wustl.edu	37	3	180327803	180327803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.D596N	1.000	94	0%	136	35.3%	0	-	probably_damaging(1)	tolerated(0.82)	deleterious(0.500)	NULL
MCCC1	56922	genome.wustl.edu	37	3	182735089	182735089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020166.3	-1	reviewed	p.D672Y	1.000	214	0%	191	38.7%	25	44%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,superfamily_Hybrid_motif
MUC4	4585	genome.wustl.edu	37	3	195512774	195512774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.D1893N	0.053	622	0%	455	19.3%	3477	26.9%	possibly_damaging(0.748)	-	-	NULL
IDUA	3425	genome.wustl.edu	37	4	995294	995294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000203.3	+1	reviewed	p.E178K	1.000	74	0%	57	36.8%	105	23.8%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Glyco_hydro_39,PatternScan_GLYCOSYL_HYDROL_F39,superfamily_Glyco_hydro_cat
ATP8A1	10396	genome.wustl.edu	37	4	42583660	42583660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006095.2	-1	reviewed	p.G271V	1.000	180	0%	192	32.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
CORIN	10699	genome.wustl.edu	37	4	47605589	47605589	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006587.2	-1	reviewed	p.I879	1.000	197	0%	190	38.9%	1	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FRYL	285527	genome.wustl.edu	37	4	48577226	48577226	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.F918L	1.000	145	0%	167	33.5%	1	0%	benign(0.002)	tolerated(0.7)	neutral(0.002)	superfamily_ARM repeat
G3BP2	9908	genome.wustl.edu	37	4	76571551	76571551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012297.4	-1	validated	p.E383K	1.000	188	0%	245	31.8%	4	25%	possibly_damaging(0.456)	deleterious(0.05)	deleterious(0.495)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
WDFY3	23001	genome.wustl.edu	37	4	85625503	85625503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.F2810L	1.000	204	0%	279	35.5%	8	62.5%	possibly_damaging(0.92)	deleterious(0.04)	deleterious(0.720)	HMMPfam_Beach,superfamily_BEACH domain
C4orf3	401152	genome.wustl.edu	37	4	120225492	120225492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399075	-1	known	p.H37Y	0.402	602	0%	622	30.7%	0	-	benign(0.429)	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126371928	126371928	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.Q3253E	1.000	54	0%	58	29.3%	0	-	probably_damaging(0.992)	tolerated(1)	neutral(0.448)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NAA15	80155	genome.wustl.edu	37	4	140263992	140263992	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057175.3	+1	validated	p.Q139*	1.000	190	0%	223	36.3%	2	0%	-	-	-	superfamily_TPR-like
FGG	2266	genome.wustl.edu	37	4	155527950	155527950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021870.2	-1	reviewed	p.D346H	1.000	318	0%	303	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGG	2266	genome.wustl.edu	37	4	155529686	155529686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021870.2	-1	reviewed	p.L261	1.000	244	0%	206	33.5%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
CLPTM1L	81037	genome.wustl.edu	37	5	1320770	1320770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030782.3	-1	provisional	p.R498Q	1.000	54	0%	39	33.3%	357	43.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CLPTM1
CTNND2	1501	genome.wustl.edu	37	5	11346575	11346575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.E513*	1.000	196	0%	177	34.5%	0	-	-	-	-	NULL
ENSG00000249556	0	genome.wustl.edu	37	5	14652391	14652391	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515374	+1	novel	NULL	1.000	38	0%	30	30%	606	0%	-	-	-	-
PAIP1	10605	genome.wustl.edu	37	5	43529910	43529910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006451.4	-1	reviewed	p.D442N	1.000	294	0%	335	29.3%	4	25%	possibly_damaging(0.786)	tolerated(0.12)	deleterious(0.555)	NULL
GPR98	84059	genome.wustl.edu	37	5	89990518	89990518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.G2649C	1.000	198	0.5%	182	33%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calx-beta,HMMSmart_SM00237
ADAMTS19	171019	genome.wustl.edu	37	5	128796169	128796169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.V23I	0.001	271	0%	220	30%	0	-	benign(0.235)	-	-	NULL
C5orf15	56951	genome.wustl.edu	37	5	133304207	133304207	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020199.2	-1	validated	p.I23	0.031	13	0%	19	52.6%	46	60.8%	-	-	-	NULL
SEC24A	10802	genome.wustl.edu	37	5	134029434	134029434	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021982.1	+1	validated	p.L599	1.000	70	0%	69	36.2%	0	-	-	-	-	HMMPfam_Sec23_trunk,superfamily_vWA-like
PKD2L2	27039	genome.wustl.edu	37	5	137257412	137257412	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014386.2	+1	validated	p.I472	1.000	724	0%	977	33.8%	0	-	-	-	-	HMMPfam_PKD_channel
PCDHA4	56144	genome.wustl.edu	37	5	140188298	140188298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.S509L	0.995	38	0%	28	17.9%	33	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB3	56132	genome.wustl.edu	37	5	140482390	140482390	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.A719	0.001	75	0%	54	20.4%	2	0%	-	-	-	NULL
PCDHGA2	56113	genome.wustl.edu	37	5	140720331	140720331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018915.2	+1	reviewed	p.S598L	0.991	34	0%	29	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140794341	140794341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018913.2	+1	reviewed	p.Q533H	0.006	132	0%	127	37.8%	0	-	benign(0.01)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
WWC1	23286	genome.wustl.edu	37	5	167850639	167850639	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.S459*	1.000	69	0%	40	37.5%	37	18.9%	-	-	-	NULL
EXOC2	55770	genome.wustl.edu	37	6	598888	598888	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018303.4	-1	reviewed	p.G314	1.000	144	0%	182	38.5%	1	0%	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17826044	17826044	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022113.4	-1	validated	p.E581Q	1.000	231	0%	197	36.5%	4	50%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	NULL
ARMC12	221481	genome.wustl.edu	37	6	35716402	35716402	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145028.3	+1	predicted	p.E287*	1.000	161	0%	100	36%	0	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
ZUFSP	221302	genome.wustl.edu	37	6	116988183	116988183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145062.2	-1	validated	p.L58R	0.001	492	0%	569	32%	0	-	benign(0.014)	tolerated(0.38)	neutral(0.018)	NULL
NMBR	4829	genome.wustl.edu	37	6	142409553	142409553	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002511.2	-1	validated	p.F81	1.000	81	0%	59	33.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
AKAP12	9590	genome.wustl.edu	37	6	151673958	151673958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.D1478N	0.002	91	0%	90	28.9%	16	31.2%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
TULP4	56995	genome.wustl.edu	37	6	158923300	158923300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020245.3	+1	validated	p.D869N	1.000	22	0%	11	45.5%	6	100%	possibly_damaging(0.638)	deleterious(0)	deleterious(0.668)	NULL
LOC100132858	100132858	genome.wustl.edu	37	7	31131	31131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715131.2	-1	model	p.P274S	0.286	46	0%	44	15.9%	1	0%	-	-	-	NULL
CCDC129	223075	genome.wustl.edu	37	7	31617535	31617535	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194300.2	+1	validated	p.L219	1.000	89	0%	83	32.5%	0	-	-	-	-	NULL
GPR141	353345	genome.wustl.edu	37	7	37780210	37780210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181791.1	+1	provisional	p.R72H	0.996	167	0%	114	44.7%	1	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_7tm_1,superfamily_SSF81321
KCTD7	154881	genome.wustl.edu	37	7	66098391	66098391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153033.3	+1	validated	p.E92K	0.998	84	0%	122	32%	7	14.2%	benign(0.018)	tolerated(0.07)	neutral(0.320)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
POR	5447	genome.wustl.edu	37	7	75583403	75583403	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000941.2	+1	reviewed	p.M31I	0.000	256	0%	241	33.6%	47	38.2%	benign(0)	tolerated(1)	-	NULL
PON1	5444	genome.wustl.edu	37	7	94931625	94931625	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000446.5	-1	reviewed	p.L267	0.028	112	0%	113	36.3%	0	-	-	-	-	superfamily_Calcium-dependent phosphotriesterase
GAL3ST4	79690	genome.wustl.edu	37	7	99758228	99758228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024637.4	-1	reviewed	p.P262A	0.540	18	0%	24	29.2%	17	35.2%	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	HMMPfam_Gal-3-0_sulfotr
ZAN	7455	genome.wustl.edu	37	7	100374089	100374089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.M2073I	0.068	288	0%	283	39.6%	0	-	unknown(0)	tolerated(0.4)	-	NULL
RBM28	55131	genome.wustl.edu	37	7	127965868	127965869	+	Splice_Site	INS	-	-	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018077.2	-1	reviewed	e11+2	0.991:1.000	-	-	-	-	-	-	-	-	-	-
CPA1	1357	genome.wustl.edu	37	7	130021554	130021554	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001868.2	+1	reviewed	p.I77	0.285	36	0%	42	35.7%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Prot_inh_propept
MGAM	8972	genome.wustl.edu	37	7	141719060	141719060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.C130Y	1.000	136	0%	132	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trefoil
KCNH2	3757	genome.wustl.edu	37	7	150649644	150649644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000238.2	-1	reviewed	p.V476I	1.000	131	0%	102	44.1%	28	32.1%	possibly_damaging(0.584)	deleterious(0.03)	deleterious(0.566)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BLK	640	genome.wustl.edu	37	8	11418839	11418839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001715.2	+1	validated	p.R353H	0.021	104	0%	91	38.5%	6	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MIR383	494332	genome.wustl.edu	37	8	14710954	14710954	+	RNA	SNP	T	T	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362257	-1	known	NULL	1.000	134	0%	115	29.6%	0	-	-	-	-	-
KCNU1	157855	genome.wustl.edu	37	8	36793343	36793343	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031836.2	+1	validated	p.Q1119*	0.000	172	0%	153	35.3%	0	-	-	-	-	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68151038	68151038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.D1024Y	1.000	500	0%	539	32.1%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68163587	68163587	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.Q933*	1.000	309	0%	356	38.2%	32	9.3%	-	-	-	superfamily_ARM-type_fold
NCOA2	10499	genome.wustl.edu	37	8	71036975	71036975	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006540.2	-1	validated	p.Q1348*	1.000	264	0%	185	37.3%	47	23.4%	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113332145	113332145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.D2411N	1.000	249	0%	349	34.7%	0	-	benign(0.198)	tolerated(0.23)	neutral(0.060)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
DENND4C	55667	genome.wustl.edu	37	9	19341013	19341013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017925.4	+1	provisional	p.G684R	1.000	166	0%	200	32%	12	33.3%	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	NULL
C9orf51	647044	genome.wustl.edu	37	9	38527179	38527179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377689	+1	known	p.S29N	0.001	12	0%	13	38.5%	0	-	possibly_damaging(0.85)	tolerated(0.09)	deleterious(0.623)	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43627803	43627803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.S295L	0.001	39	0%	27	33.3%	0	-	probably_damaging(0.999)	tolerated(0.69)	deleterious(0.492)	NULL
XPA	7507	genome.wustl.edu	37	9	100447258	100447258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000380.3	-1	reviewed	p.R207Q	1.000	679	0.1%	886	36.6%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Putativ_DNA_bind
OR13F1	138805	genome.wustl.edu	37	9	107267278	107267278	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004485.1	+1	provisional	p.L245	0.996	210	0%	158	39.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ZNF883	169834	genome.wustl.edu	37	9	115760054	115760054	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101338.1	-1	validated	p.F162	0.981	394	0%	410	35.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNTRL	11064	genome.wustl.edu	37	9	123858837	123858837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.S206L	1.000	292	0%	415	30.6%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
C9orf50	375759	genome.wustl.edu	37	9	132381882	132381882	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199350.3	-1	validated	p.T211	0.003	227	0%	184	38%	0	-	-	-	-	NULL
DDX31	64794	genome.wustl.edu	37	9	135501083	135501083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022779.7	-1	reviewed	p.D666N	1.000	308	0%	342	31.3%	1	0%	probably_damaging(0.969)	tolerated(0.14)	deleterious(0.661)	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139272273	139272273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003086.2	-1	validated	p.E1336K	0.000	18	0.000	6	0.667	19	47.3%	possibly_damaging(0.662)	tolerated(0.07)	deleterious(0.553)	NULL
OPTN	10133	genome.wustl.edu	37	10	13164418	13164418	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424614	+1	known	p.V87A	0.000	223	0%	226	29.6%	8	25%	-	-	-	NULL
ACBD7	414149	genome.wustl.edu	37	10	15120550	15120550	+	Silent	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039844.2	-1	validated	p.L82	1.000	313	0%	214	14%	1	0%	-	-	-	HMMPfam_ACBP,superfamily_Acyl-CoA binding protein
RPP38	10557	genome.wustl.edu	37	10	15145710	15145710	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097590.1	+1	validated	p.L133	0.836	96	0%	54	13%	42	21.4%	-	-	-	HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315
CUBN	8029	genome.wustl.edu	37	10	17171680	17171680	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.E29Q	0.008	534	0%	333	52%	0	-	probably_damaging(0.96)	deleterious(0.04)	deleterious(0.752)	NULL
FAS	355	genome.wustl.edu	37	10	90770355	90770355	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000043.3	+1	reviewed	p.G169fs	0.509	-	-	-	-	-	-	-	-	-	NULL
PHRF1	57661	genome.wustl.edu	37	11	609285	609285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020901.2	+1	validated	p.D1276N	0.756	49	0%	39	15.4%	33	3%	benign(0.025)	deleterious(0)	neutral(0.446)	NULL
ZNF195	7748	genome.wustl.edu	37	11	3381373	3381373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130520.1	-1	validated	p.E289K	0.000	142	0%	184	35.3%	1	0%	benign(0.002)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
DBX1	120237	genome.wustl.edu	37	11	20178719	20178719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029865.1	-1	provisional	p.R179Q	1.000	19	0%	10	80%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Homeodomain-like
MARK2	2011	genome.wustl.edu	37	11	63670132	63670132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039469.2	+1	reviewed	p.A399T	0.982	68	0%	84	33.3%	26	46.1%	benign(0.006)	tolerated(0.24)	neutral(0.037)	NULL
MRPL49	740	genome.wustl.edu	37	11	64893016	64893016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004927.2	+1	reviewed	p.V96I	1.000	212	0%	242	33.1%	103	52.4%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_Img2
TBX10	347853	genome.wustl.edu	37	11	67401671	67401671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005995.3	-1	provisional	p.D180N	1.000	34	0%	27	48.1%	0	-	benign(0.17)	deleterious(0.04)	neutral(0.364)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
LRP5	4041	genome.wustl.edu	37	11	68201159	68201159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002335.2	+1	reviewed	p.E1285K	1.000	33	0%	17	35.3%	146	54.1%	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
CCDC67	159989	genome.wustl.edu	37	11	93088706	93088706	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181645.3	+1	validated	p.E67Q	1.000	232	0%	199	33.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108384595	108384595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015065.2	-1	validated	p.E547Q	0.012	116	0%	112	40.2%	1	0%	possibly_damaging(0.488)	deleterious(0.01)	deleterious(0.568)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117303143	117303143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.V1762I	0.998	191	0%	151	34.4%	0	-	possibly_damaging(0.893)	tolerated(0.5)	neutral(0.362)	NULL
MCAM	4162	genome.wustl.edu	37	11	119182786	119182786	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006500.2	-1	validated	p.L373	0.759	39	0%	56	39.3%	25	12%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TMEM225	338661	genome.wustl.edu	37	11	123755313	123755313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013743.1	-1	provisional	p.T71M	0.001	215	0%	238	31.9%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
GLB1L3	112937	genome.wustl.edu	37	11	134188824	134188824	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.K650	0.001	222	0%	221	44.8%	0	-	-	-	-	NULL
ANO2	57101	genome.wustl.edu	37	12	5756964	5756964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020373.2	-1	validated	p.D517N	1.000	238	0%	243	35.8%	0	-	benign(0.124)	tolerated(0.23)	neutral(0.052)	NULL
CASC1	55259	genome.wustl.edu	37	12	25307271	25307271	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018272.3	-1	validated	p.K140	0.986	388	0%	433	36.3%	0	-	-	-	-	NULL
IRAK4	51135	genome.wustl.edu	37	12	44166772	44166772	+	Missense_Mutation	SNP	G	G	A	rs186194251	by1000genomes	TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114182.2	+1	reviewed	p.R183Q	0.998	240	0%	308	32.8%	4	50%	possibly_damaging(0.638)	tolerated(0.17)	neutral(0.282)	superfamily_Protein kinase-like (PK-like)
SLC11A2	4891	genome.wustl.edu	37	12	51386088	51386088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000617.2	-1	reviewed	p.R411Q	1.000	174	0%	179	41.3%	87	47.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nramp
ENSG00000135477	0	genome.wustl.edu	37	12	52652235	52652235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000257935	-1	known	p.A35T	1.000	13	0%	15	46.7%	0	-	-	-	-	NULL
ESPL1	9700	genome.wustl.edu	37	12	53677890	53677890	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012291.4	+1	validated	p.N1042	0.124	218	0%	219	41.6%	18	55.5%	-	-	-	NULL
LOC100289011	100289011	genome.wustl.edu	37	12	54962946	54962946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343169.1	-1	model	p.H57N	0.813	36	0%	20	20%	0	-	unknown(0)	deleterious(0)	-	NULL
ERBB3	2065	genome.wustl.edu	37	12	56481612	56481612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.G216A	1.000	208	0%	155	42.6%	116	54.3%	possibly_damaging(0.928)	tolerated(0.21)	neutral(0.419)	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain
GRIP1	23426	genome.wustl.edu	37	12	66814557	66814557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021150.3	-1	reviewed	p.R542T	1.000	356	0%	371	38.3%	0	-	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PARPBP	55010	genome.wustl.edu	37	12	102572517	102572517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017915.2	+1	predicted	p.H304Y	0.000	299	0%	334	34.4%	3	66.6%	benign(0)	tolerated(1)	-	NULL
IGF1	3479	genome.wustl.edu	37	12	102869441	102869441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111285.1	-1	reviewed	p.G67E	1.000	53	0%	33	33.3%	6	0%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like
VSIG10	54621	genome.wustl.edu	37	12	118533379	118533379	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019086.5	-1	validated	p.L107R	0.994	125	0%	92	34.8%	14	64.2%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
GLT1D1	144423	genome.wustl.edu	37	12	129373189	129373189	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144669.1	+1	provisional	p.R75*	0.000	259	0%	264	32.2%	0	-	-	-	-	NULL
ZNF140	7699	genome.wustl.edu	37	12	133683082	133683082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003440.2	+1	validated	p.H407Y	1.000	131	0%	171	29.8%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NAA16	79612	genome.wustl.edu	37	13	41899893	41899893	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.V199	1.000	199	0%	264	37.9%	0	-	-	-	-	superfamily_TPR-like
FAM194B	220081	genome.wustl.edu	37	13	46142541	46142541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182542.2	-1	predicted	p.E366*	0.011	481	0%	563	37.1%	0	-	-	-	-	NULL
PCDH17	27253	genome.wustl.edu	37	13	58298758	58298758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.C937Y	1.000	54	0%	42	31%	1	0%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60407388	60407388	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.A960	0.926	236	0%	313	36.1%	6	33.3%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
LOC643677	643677	genome.wustl.edu	37	13	103386886	103386886	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.S5235	0.518	657	0%	630	37%	0	-	-	-	-	NULL
SALL2	6297	genome.wustl.edu	37	14	22004984	22004984	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.N24	1.000	89	0%	92	34.8%	0	-	-	-	-	NULL
KIAA0391	9692	genome.wustl.edu	37	14	35592628	35592628	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014672.2	+1	provisional	p.T59	0.000	150	0%	157	29.3%	2	100%	-	-	-	NULL
KIAA0391	9692	genome.wustl.edu	37	14	35592755	35592755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014672.2	+1	provisional	p.D102N	0.018	66	0%	79	19%	7	57.1%	benign(0.009)	tolerated(0.38)	neutral(0.018)	NULL
KIAA0391	9692	genome.wustl.edu	37	14	35593125	35593125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014672.2	+1	provisional	p.R225T	0.980	111	0%	101	32.7%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
NIN	51199	genome.wustl.edu	37	14	51224804	51224804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020921.3	-1	reviewed	p.E982K	0.987	101	1%	105	40%	1	100%	possibly_damaging(0.455)	tolerated(0.08)	neutral(0.449)	NULL
FERMT2	10979	genome.wustl.edu	37	14	53347766	53347766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134999.1	-1	validated	p.D281E	1.000	228	0%	235	35.7%	4	25%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
LTBP2	4053	genome.wustl.edu	37	14	74975349	74975349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000428.2	-1	reviewed	p.A1204T	0.987	43	0%	27	44.4%	31	9.6%	possibly_damaging(0.743)	tolerated(0.08)	deleterious(0.573)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
CEP128	145508	genome.wustl.edu	37	14	81244378	81244378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152446.3	-1	validated	p.E742Q	1.000	136	0%	123	47.2%	0	-	possibly_damaging(0.875)	tolerated(0.51)	neutral(0.349)	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22864282	22864282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.R747K	1.000	196	0%	211	29.9%	1	0%	benign(0.291)	tolerated(0.85)	neutral(0.090)	HMMPfam_Spc97_Spc98
LOC728310	728310	genome.wustl.edu	37	15	29088506	29088523	+	RNA	DEL	CTCCTGATCCCGTAGCTC	CTCCTGATCCCGTAGCTC	-	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	CTCCTGATCCCGTAGCTC	CTCCTGATCCCGTAGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078490.1	-1	model	NULL	0.220:0.284:0.294:0.271:0.220:0.227:0.201:0.214:0.229:0.214:0.212:0.219:0.322:0.587:0.890:0.940:0.965:0.985	-	-	-	-	-	-	-	-	-	-
RYR3	6263	genome.wustl.edu	37	15	34102823	34102823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.I3390M	1.000	118	0%	86	31.4%	0	-	possibly_damaging(0.606)	-	-	NULL
ZFP106	64397	genome.wustl.edu	37	15	42720288	42720288	+	Silent	SNP	G	G	A	rs11544099	byCluster;byFrequency;by1000genomes	TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022473.1	-1	provisional	p.L1619	1.000	148	0%	106	27.4%	13	30.7%	-	-	-	superfamily_WD40_like
CEP152	22995	genome.wustl.edu	37	15	49036482	49036482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.E1208K	1.000	148	0%	149	20.8%	1	100%	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51242333	51242333	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007347.3	+1	validated	p.F505L	0.048	289	0%	286	42.3%	1	100%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
SKOR1	390598	genome.wustl.edu	37	15	68124682	68124682	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031807.1	+1	provisional	p.L842	1.000	147	0%	130	33.8%	0	-	-	-	-	NULL
ABHD2	11057	genome.wustl.edu	37	15	89698680	89698680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007011.7	+1	reviewed	p.Q151H	1.000	160	0%	126	38.9%	67	44.7%	benign(0.19)	deleterious(0.02)	neutral(0.401)	superfamily_SSF53474
FAM174B	400451	genome.wustl.edu	37	15	93198572	93198572	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207446.2	-1	validated	p.I106	1.000	23	0%	25	56%	54	66.6%	-	-	-	HMMPfam_DUF1180
EME2	197342	genome.wustl.edu	37	16	1825808	1825808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010865.1	+1	provisional	p.E329K	0.992	44	0%	50	22%	3	33.3%	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	HMMPfam_ERCC4
TIGD7	91151	genome.wustl.edu	37	16	3349103	3349103	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033208.2	-1	validated	p.L504	0.981	188	0%	271	50.2%	2	0%	-	-	-	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857895	9857895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.R1169Q	1.000	165	0%	184	25.5%	0	-	possibly_damaging(0.805)	tolerated(0.41)	neutral(0.318)	HMMPfam_NMDAR2_C
ITGAX	3687	genome.wustl.edu	37	16	31384633	31384633	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000887.3	+1	reviewed	p.D810	0.977	117	0%	131	20.6%	36	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
PHKB	5257	genome.wustl.edu	37	16	47732443	47732443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	p.E1030K	1.000	118	0%	217	23.5%	13	30.7%	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	HMMPfam_PHK_AB
FOXC2	2303	genome.wustl.edu	37	16	86601025	86601025	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005251.2	+1	reviewed	p.A28	0.410	28	0%	16	87.5%	0	-	-	-	-	NULL
SGSM2	9905	genome.wustl.edu	37	17	2280296	2280296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.M912I	1.000	88	0%	76	50%	75	42.6%	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
C17orf85	55421	genome.wustl.edu	37	17	3721643	3721643	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114118.1	-1	provisional	p.L408	1.000	129	0%	116	41.4%	6	50%	-	-	-	NULL
ZMYND15	84225	genome.wustl.edu	37	17	4644179	4644179	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136046.1	+1	provisional	p.G112	0.985	72	0%	78	43.6%	1	100%	-	-	-	NULL
DVL2	1856	genome.wustl.edu	37	17	7130433	7130433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004422.2	-1	reviewed	p.D507N	1.000	102	0%	81	11.1%	91	4.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
CNTROB	116840	genome.wustl.edu	37	17	7851917	7851917	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380262	+1	known	p.L831	1.000	279	0.4%	215	34.9%	26	42.3%	-	-	-	NULL
MYH10	4628	genome.wustl.edu	37	17	8492423	8492423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.R169H	1.000	277	0%	321	34%	3	0%	possibly_damaging(0.931)	tolerated(0.07)	deleterious(0.697)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH3	4621	genome.wustl.edu	37	17	10545570	10545570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.S649C	1.000	170	0%	125	37.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
LOC100128006	100128006	genome.wustl.edu	37	17	12664059	12664059	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078523.1	-1	model	NULL	0.000	195	0%	179	34.6%	0	-	-	-	-	-
ENSG00000251558	0	genome.wustl.edu	37	17	26206277	26206277	+	RNA	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502259	+1	known	NULL	0.825	14	0%	19	26.3%	0	-	-	-	-	-
SEBOX	645832	genome.wustl.edu	37	17	26691495	26691495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080837.2	-1	validated	p.S149L	0.002	242	0%	211	35.5%	0	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	NULL
ARL4D	379	genome.wustl.edu	37	17	41477351	41477351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001661.3	+1	reviewed	p.R84Q	1.000	70	0%	56	41.1%	22	59%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD300LG	146894	genome.wustl.edu	37	17	41931389	41931389	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145273.3	+1	validated	p.L232	0.928	61	0%	38	44.7%	0	-	-	-	-	NULL
DGKE	8526	genome.wustl.edu	37	17	54939507	54939507	+	Silent	SNP	C	C	T	rs148695016	by1000genomes	TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003647.2	+1	reviewed	p.D473	0.988	225	0.9%	303	32.7%	11	27.2%	-	-	-	HMMPfam_DAGK_acc,HMMSmart_SM00045
OTOP2	92736	genome.wustl.edu	37	17	72921753	72921753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178160.2	+1	validated	p.H139R	0.998	164	0%	111	42.3%	1	0%	possibly_damaging(0.704)	deleterious(0.05)	deleterious(0.599)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2656168	2656168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.D32H	1.000	44	0%	39	12.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CEP192	55125	genome.wustl.edu	37	18	13015357	13015357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506447	+1	known	p.E184K	0.137	316	0%	291	33.7%	0	-	possibly_damaging(0.93)	deleterious(0.02)	deleterious(0.760)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14748608	14748608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.V64I	0.000	72	0%	48	35.4%	0	-	benign(0.004)	tolerated(1)	-	superfamily_Ankyrin repeat
LOXHD1	125336	genome.wustl.edu	37	18	44087609	44087609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145472.2	-1	reviewed	p.R751W	0.980	148	0.7%	134	30.6%	0	-	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
ZNF407	55628	genome.wustl.edu	37	18	72344821	72344821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.L616V	0.000	149	0%	97	38.1%	1	100%	possibly_damaging(0.527)	tolerated(0.07)	deleterious(0.497)	HMMSmart_SM00451,HMMSmart_SM00355
MUC16	94025	genome.wustl.edu	37	19	9015661	9015661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S12721F	0.036	564	0%	478	34.1%	71	49.2%	probably_damaging(0.996)	-	-	HMMPfam_SEA,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9062695	9062695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.D8251N	0.000	133	0%	96	40.6%	9	66.6%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9071910	9071910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.N5179S	0.000	367	0%	310	36.1%	6	33.3%	unknown(0)	-	-	NULL
LDLR	3949	genome.wustl.edu	37	19	11238760	11238760	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000527.3	+1	reviewed	p.I796	0.022	119	0%	86	23.3%	115	40.8%	-	-	-	NULL
ZNF443	10224	genome.wustl.edu	37	19	12543962	12543962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005815.4	-1	validated	p.W18L	1.000	502	0%	475	17.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
HOOK2	29911	genome.wustl.edu	37	19	12874404	12874404	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013312.2	-1	validated	p.E650Q	1.000	175	0%	138	30.4%	72	45.8%	benign(0.259)	deleterious(0.03)	neutral(0.392)	HMMPfam_HOOK
CPAMD8	27151	genome.wustl.edu	37	19	17086035	17086035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015692.2	-1	validated	p.D695H	1.000	95	0%	80	42.5%	11	9%	possibly_damaging(0.767)	tolerated(0.22)	neutral(0.326)	NULL
CRTC1	23373	genome.wustl.edu	37	19	18882289	18882289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098482.1	+1	validated	p.S469Y	1.000	100	0%	55	27.3%	20	40%	probably_damaging(0.998)	tolerated(0.52)	deleterious(0.483)	NULL
UPF1	5976	genome.wustl.edu	37	19	18965998	18965998	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.G497	0.908	30	0%	41	24.4%	120	33.3%	-	-	-	HMMPfam_ResIII,superfamily_SSF52540
ZNF181	339318	genome.wustl.edu	37	19	35232054	35232054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029997.3	+1	validated	p.W256*	0.832	175	0%	172	23.3%	6	33.3%	-	-	-	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ACTN4	81	genome.wustl.edu	37	19	39214715	39214715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004924.3	+1	reviewed	p.E564K	1.000	47	0%	40	35%	394	37.5%	unknown(0)	tolerated(0.31)	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MIR330	442902	genome.wustl.edu	37	19	46142270	46142270	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362196	-1	known	NULL	1.000	49	0%	40	30%	1	0%	-	-	-	-
POLD1	5424	genome.wustl.edu	37	19	50905595	50905595	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002691.2	+1	validated	p.F241	0.700	31	0%	20	40%	132	41.6%	-	-	-	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
USP29	57663	genome.wustl.edu	37	19	57640818	57640818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.E259K	0.000	152	0%	159	39%	0	-	benign(0.018)	tolerated(0.12)	neutral(0.261)	NULL
PSMF1	9491	genome.wustl.edu	37	20	1108137	1108137	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006814.3	+1	reviewed	p.L117	0.598	179	0%	195	20%	265	27.1%	-	-	-	NULL
SIRPG	55423	genome.wustl.edu	37	20	1616211	1616211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018556.3	-1	reviewed	p.M261I	0.003	189	0%	233	19.3%	6	0%	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_C1-set,HMMSmart_SM00409,superfamily_Immunoglobulin
ATRN	8455	genome.wustl.edu	37	20	3529829	3529829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139321.2	+1	reviewed	p.S319L	0.998	410	0%	639	22.7%	29	31%	benign(0.362)	deleterious(0)	deleterious(0.559)	superfamily_Galactose oxidase central domain
ATRN	8455	genome.wustl.edu	37	20	3581607	3581607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139321.2	+1	reviewed	p.L1193F	1.000	160	0%	242	22.7%	65	23%	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	NULL
E2F1	1869	genome.wustl.edu	37	20	32265234	32265234	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005225.2	-1	reviewed	p.E280Q	0.922	140	0%	146	28.1%	59	47.4%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
RALGAPB	57148	genome.wustl.edu	37	20	37146448	37146448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020336.2	+1	validated	p.K408E	0.997	337	0%	450	51.1%	19	63.1%	benign(0)	tolerated(0.97)	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40074344	40074344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.E1280K	1.000	121	0.8%	167	36.5%	16	31.2%	probably_damaging(0.976)	tolerated(0.06)	deleterious(0.740)	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47591368	47591368	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.W577*	1.000	182	0%	212	28.8%	13	7.6%	-	-	-	superfamily_ARM-type_fold
CBLN4	140689	genome.wustl.edu	37	20	54579031	54579031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080617.4	-1	reviewed	p.A66V	1.000	98	0%	96	27.1%	0	-	possibly_damaging(0.597)	tolerated(0.05)	deleterious(0.552)	HMMSmart_C1Q
KCNQ2	3785	genome.wustl.edu	37	20	62062712	62062712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	p.Q377E	1.000	259	0%	357	27.5%	0	-	benign(0.032)	tolerated(1)	neutral(0.002)	NULL
SLC19A1	6573	genome.wustl.edu	37	21	46951483	46951483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194255.1	-1	validated	p.E257K	1.000	13	0%	11	36.4%	6	66.6%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
KLHL22	84861	genome.wustl.edu	37	22	20812233	20812233	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032775.2	-1	validated	p.H389	0.991	85	0%	62	32.3%	215	39%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
GGA1	26088	genome.wustl.edu	37	22	38017654	38017654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013365.4	+1	reviewed	p.P187L	1.000	69	0%	65	32.3%	15	53.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_GAT-like domain
SMCR7L	54471	genome.wustl.edu	37	22	39910028	39910028	+	Silent	SNP	C	C	G	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019008.4	+1	validated	p.L364	1.000	62	0%	32	18.8%	54	46.2%	-	-	-	NULL
PRR5	55615	genome.wustl.edu	37	22	45128211	45128211	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455389	+1	known	p.R125H	0.945	13	0%	12	58.3%	53	33.9%	-	-	-	HMMPfam_HbrB
FBLN1	2192	genome.wustl.edu	37	22	45937131	45937131	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006486.2	+1	reviewed	p.I315	0.814	154	0%	124	42.7%	293	30.3%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CELSR1	9620	genome.wustl.edu	37	22	46930005	46930005	+	Silent	SNP	A	A	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454637	-1	known	p.F396Y	0.909	106	0%	91	40.7%	82	54.8%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
BRD1	23774	genome.wustl.edu	37	22	50216880	50216880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014577.1	-1	reviewed	p.M362I	1.000	99	0%	77	41.6%	34	29.4%	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	HMMSmart_PHD
FTHL17	53940	genome.wustl.edu	37	X	31089692	31089692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031894.2	-1	reviewed	p.D127N	0.977	115	0%	83	22.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ferritin,superfamily_Ferritin/RR_like,PatternScan_FERRITIN_2
SLC35A2	7355	genome.wustl.edu	37	X	48767112	48767112	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005660.1	-1	provisional	p.L85	1.000	99	0%	81	30.9%	127	92.9%	-	-	-	NULL
ZXDB	158586	genome.wustl.edu	37	X	57619771	57619771	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007157.3	+1	validated	p.G430	0.998	289	0%	191	34.6%	6	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
NLGN3	54413	genome.wustl.edu	37	X	70389105	70389105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.D549N	1.000	66	0%	44	22.7%	0	-	benign(0.38)	tolerated(0.35)	neutral(0.142)	HMMPfam_COesterase,superfamily_SSF53474
NOX1	27035	genome.wustl.edu	37	X	100117472	100117472	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.E194*	1.000	127	0%	114	30.7%	0	-	-	-	-	HMMPfam_Ferric_reduct
IRS4	8471	genome.wustl.edu	37	X	107977583	107977583	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.T664	0.006	432	0%	427	30.4%	0	-	-	-	-	NULL
FLNA	2316	genome.wustl.edu	37	X	153580678	153580678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16J-01A-11D-A12J-09	TCGA-D1-A16J-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.V2214M	1.000	123	0%	106	27.4%	306	0.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
