Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	877579	877579	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:877579C>T	uc001abw.1	+	9	1013	c.933C>T	c.(931-933)CCC>CCT	p.P311P	SAMD11_uc001abx.1_Silent_p.P174P	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	311						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CCCTGGGCCCCCATCTCAGGC	0.746000													4	10					0	0	0.00024832	0	0
C1orf127	148345	broad.mit.edu	37	1	11008296	11008296	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:11008296G>A	uc010oao.1	-	8	1454	c.1449C>T	c.(1447-1449)CTC>CTT	p.L483L	C1orf127_uc001arr.1_Silent_p.L465L|C1orf127_uc001ars.1_Silent_p.L457L	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	483										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		CCTCCCTGGGGAGACCAGGCC	0.647000													31	57					0	0	0.000491102	0	0
PTCHD2	57540	broad.mit.edu	37	1	11589855	11589855	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:11589855C>T	uc001ash.3	+	15	3079	c.2941C>T	c.(2941-2943)CGT>TGT	p.R981C		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	981	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GCCCAAGGCCCGTCTCTCAGC	0.647000													22	22					0	0	0.000295444	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12884979	12884979	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:12884979C>T	uc001auk.2	-	4	1328	c.1132G>A	c.(1132-1134)GAA>AAA	p.E378K		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	378											0						CCATAACTTTCCTGCGGGGCA	0.502000													127	151					0	0	0.000781405	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939556	12939556	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:12939556G>A	uc001aun.2	-	4	1317	c.1246C>T	c.(1246-1248)CCT>TCT	p.P416S		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	416										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CGGGGGGCAGGATACAGCTCC	0.512000													123	182					0	0	0.000781405	0	0
LOC440563	440563	broad.mit.edu	37	1	13183780	13183780	+	Silent	SNP	A	C	C	rs116484938	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:13183780A>C	uc010obg.1	-	1	188	c.93T>G	c.(91-93)TCT>TCG	p.S31S		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	31						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CCTCCACATCAGATTTCTTGA	0.468000													4	31					0	0	0.000602214	0	0
FBXO42	54455	broad.mit.edu	37	1	16583245	16583245	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:16583245G>A	uc001ayg.2	-	5	728	c.512C>T	c.(511-513)CCT>CTT	p.P171L	FBXO42_uc001ayf.2_Missense_Mutation_p.P78L	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	171	Kelch 1.									upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		TTTGGGGGAAGGATAGGACCC	0.522000													15	17					0	0	0.00074312	0	0
NBPF1	55672	broad.mit.edu	37	1	16893761	16893761	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:16893761G>A	uc009vos.1	-	26	3865	c.2977C>T	c.(2977-2979)CTT>TTT	p.L993F	NBPF1_uc009vot.1_Missense_Mutation_p.L376F|NBPF1_uc001ayz.1_Missense_Mutation_p.L376F|NBPF1_uc010oce.1_Missense_Mutation_p.L647F	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	993	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTCAGTTCAAGATAACCTGAA	0.498000													17	517					0	0	0.000566183	0	0
NBPF1	55672	broad.mit.edu	37	1	16907242	16907243	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:16907242_16907243GG>TT	uc009vos.1	-	16	2476_2477	c.1588_1589CC>AA	c.(1588-1590)CCA>AAA	p.P530K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P259K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	530	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGCTACCTGGGAGAATGTTT	0.421000													12	696					0	0	6.4e-05	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447457	24447457	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:24447457G>A	uc001biq.1	-	7	1602	c.1563C>T	c.(1561-1563)TCC>TCT	p.S521S	IL22RA1_uc010oeg.1_Silent_p.S453S|IL22RA1_uc009vrb.1_Silent_p.S385S|IL22RA1_uc010oeh.1_3'UTR	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	521	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		GGTCCGAGGGGGAACATGGAC	0.627000													16	27					0	0	0.000422831	0	0
OPRD1	4985	broad.mit.edu	37	1	29189617	29189617	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:29189617A>G	uc001brf.1	+	3	1183	c.941A>G	c.(940-942)AAC>AGC	p.N314S		NM_000911	NP_000902	P41143	OPRD_HUMAN	opioid receptor, delta 1	314	Cytoplasmic (Potential).				immune response|protein import into nucleus, translocation	integral to plasma membrane	delta-opioid receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000947)|all_lung(284;0.00131)|Renal(390;0.00758)|Breast(348;0.00765)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-07)|COAD - Colon adenocarcinoma(152;7.51e-06)|STAD - Stomach adenocarcinoma(196;0.00306)|BRCA - Breast invasive adenocarcinoma(304;0.0241)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)	Butorphanol(DB00611)|Codeine(DB00318)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Loperamide(DB00836)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pimozide(DB01100)|Propoxyphene(DB00647)	AGCAGCCTCAACCCCGTGCTC	0.672000													4	6					0	0	0.00024832	0	0
EPB41	2035	broad.mit.edu	37	1	29319972	29319973	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:29319972_29319973CC>TT	uc001brm.1	+	2	606_607	c.599_600CC>TT	c.(598-600)TCC>TTT	p.S200F	EPB41_uc001brg.1_5'UTR|EPB41_uc001brh.1_5'UTR|EPB41_uc001bri.1_Missense_Mutation_p.S200F|EPB41_uc001brj.1_5'UTR|EPB41_uc009vtk.1_Missense_Mutation_p.S200F|EPB41_uc001brk.2_Missense_Mutation_p.S200F|EPB41_uc001brl.1_Missense_Mutation_p.S200F|EPB41_uc009vtl.1_5'UTR|EPB41_uc009vtm.1_Intron	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	200					blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		TTAAAAGCTTCCCAAAAACCAA	0.366000													40	47					0	0	6.4e-05	0	0
NKAIN1	79570	broad.mit.edu	37	1	31655411	31655411	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:31655411G>T	uc010ogd.1	-	5	504	c.498C>A	c.(496-498)TAC>TAA	p.Y166*	NKAIN1_uc001bsn.2_Nonsense_Mutation_p.Y122*|NKAIN1_uc010ogc.1_Nonsense_Mutation_p.Y95*	NM_024522	NP_078798	Q4KMZ8	NKAI1_HUMAN	Na+/K+ transporting ATPase interacting 1	166	Helical; (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)|Breast(348;0.141)|all_neural(195;0.146)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0184)|READ - Rectum adenocarcinoma(331;0.148)		CTTTGCTCACGTAGCAGGCGA	0.637000													37	33					9.9191e-30	1.09944e-28	0.000374591	1	0
CSMD2	114784	broad.mit.edu	37	1	34087804	34087804	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:34087804G>A	uc001bxn.1	-	37	5699	c.5670C>T	c.(5668-5670)ATC>ATT	p.I1890I	CSMD2_uc001bxm.1_Silent_p.I1930I|CSMD2_uc001bxo.1_Silent_p.I803I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1890	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGATACGCTGATATCTGAGT	0.517000													60	89					0	0	0.000781405	0	0
CCDC30	728621	broad.mit.edu	37	1	43119503	43119503	+	Missense_Mutation	SNP	G	A	A	rs147050676		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:43119503G>A	uc009vwk.1	+	16	2266	c.2156G>A	c.(2155-2157)GGT>GAT	p.G719D	CCDC30_uc001chm.2_Missense_Mutation_p.G417D|CCDC30_uc001chn.2_Missense_Mutation_p.G508D	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	719											0						TCAGGAAAAGGTTTGGTAGAG	0.403000													23	20					0	0	0.000720815	0	0
KIAA0467	23334	broad.mit.edu	37	1	43880784	43880784	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:43880784C>T	uc009vws.1	+	5	614	c.530C>T	c.(529-531)TCC>TTC	p.S177F				Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	177						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTGGACCCTTCCCAGCGGGAG	0.572000											OREG0013431	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	16					0	0	0.000673444	0	0
IPO13	9670	broad.mit.edu	37	1	44423214	44423214	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:44423214C>T	uc001ckx.2	+	7	2328	c.1533C>T	c.(1531-1533)TTC>TTT	p.F511F		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	511	HEAT 8.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CTGTCATGTTCACCATTGGTG	0.552000													33	28					0	0	0.00058488	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47366002	47366002	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:47366002C>T	uc001cqo.1	-	1		c.146G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TCCATCTCCTCCTCTGGTACA	0.547000													5	12					0	0	0.000602214	0	0
CDCP2	200008	broad.mit.edu	37	1	54610221	54610221	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:54610221G>A	uc001cwv.1	-	2	1193	c.345C>T	c.(343-345)ACC>ACT	p.T115T		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	115	CUB 1.					extracellular region				ovary(1)	1						GCCAGGAGGAGGTGAAGGGCG	0.602000													24	24					0	0	0.000295444	0	0
DAB1	1600	broad.mit.edu	37	1	57537964	57537964	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:57537964C>T	uc001cys.1	-	7	1104	c.430G>A	c.(430-432)GCC>ACC	p.A144T	DAB1_uc001cyt.1_Missense_Mutation_p.A144T|DAB1_uc001cyq.1_Missense_Mutation_p.A144T|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Missense_Mutation_p.A144T|DAB1_uc009vzx.1_Missense_Mutation_p.A144T	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	144	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						ACCGCCTGGGCTGTTTTTATG	0.493000													23	27					0	0	0.000586117	0	0
DOCK7	85440	broad.mit.edu	37	1	63005462	63005462	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:63005462G>A	uc001daq.2	-	26	3181	c.3147C>T	c.(3145-3147)GTC>GTT	p.V1049V	DOCK7_uc001dan.2_Silent_p.V910V|DOCK7_uc001dao.2_Silent_p.V910V|DOCK7_uc001dap.2_Silent_p.V1018V|DOCK7_uc001dam.2_Silent_p.V229V	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1049					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						CAATCGTGCTGACAAGAGCTG	0.373000													20	24					0	0	0.000229342	0	0
DOCK7	85440	broad.mit.edu	37	1	63024887	63024887	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:63024887G>A	uc001daq.2	-	20	2238	c.2204C>T	c.(2203-2205)CCT>CTT	p.P735L	DOCK7_uc001dan.2_Missense_Mutation_p.P627L|DOCK7_uc001dao.2_Missense_Mutation_p.P627L|DOCK7_uc001dap.2_Missense_Mutation_p.P735L	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	735	DHR-1.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						GTCAAGATAAGGATCCTAAAA	0.363000													15	12					0	0	0.00074312	0	0
DNAJC6	9829	broad.mit.edu	37	1	65858517	65858517	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:65858517C>T	uc001dcd.1	+	12	1865	c.1701C>T	c.(1699-1701)ACC>ACT	p.T567T	DNAJC6_uc001dcc.1_Silent_p.T598T|DNAJC6_uc010opc.1_Silent_p.T554T|DNAJC6_uc001dce.1_Silent_p.T624T	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	567	Pro-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						CCACCTCCACCTCTGCGTCTC	0.517000													18	21					0	0	0.000175454	0	0
C1orf173	127254	broad.mit.edu	37	1	75038009	75038009	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:75038009C>T	uc001dgg.2	-	14	3604	c.3385G>A	c.(3385-3387)GAA>AAA	p.E1129K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1129	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ACAGGTGCTTCGTTCTCAGCA	0.468000													26	40					0	0	0.000586117	0	0
C1orf173	127254	broad.mit.edu	37	1	75086490	75086490	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:75086490C>T	uc001dgg.2	-	8	1147	c.928G>A	c.(928-930)GAA>AAA	p.E310K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E104K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	310										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ACTTTAATTTCATCCCGGAAG	0.348000													19	24					0	0	0.000958276	0	0
LPAR3	23566	broad.mit.edu	37	1	85331580	85331580	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:85331580G>A	uc001dkl.2	-	1	263	c.224C>T	c.(223-225)GCC>GTC	p.A75V	LPAR3_uc009wcj.1_Missense_Mutation_p.A75V	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	75	Helical; Name=2; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						GAAGAAATCGGCAGCAGCTAA	0.418000													41	53					0	0	0.000191422	0	0
CCBL2	56267	broad.mit.edu	37	1	89420882	89420882	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:89420882T>C	uc001dmp.2	-	9	1191	c.814A>G	c.(814-816)ACA>GCA	p.T272A	CCBL2_uc001dmq.2_Missense_Mutation_p.T238A|CCBL2_uc001dmr.2_Missense_Mutation_p.T108A	NM_001008661	NP_001008661	Q6YP21	KAT3_HUMAN	kynurenine aminotransferase III isoform 1	272					biosynthetic process|kynurenine metabolic process|tryptophan catabolic process		cysteine-S-conjugate beta-lyase activity|kynurenine-glyoxylate transaminase activity|kynurenine-oxoglutarate transaminase activity|pyridoxal phosphate binding			ovary(1)	1		Lung NSC(277;0.123)		all cancers(265;0.0117)|Epithelial(280;0.0341)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ATTGTTATTGTTCTCTCCCAC	0.318000													35	37					0	0	0.000191422	0	0
HFM1	164045	broad.mit.edu	37	1	91843681	91843681	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:91843681C>T	uc001doa.3	-	11	1396	c.1296G>A	c.(1294-1296)ATG>ATA	p.M432I	HFM1_uc010osu.1_Missense_Mutation_p.M111I|HFM1_uc010osv.1_Missense_Mutation_p.M116I|HFM1_uc001doc.1_Missense_Mutation_p.M432I	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	432	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		GTACAGTTTTCATTCTGCTAA	0.348000													12	10					0	0	0.000151284	0	0
AKNAD1	254268	broad.mit.edu	37	1	109385790	109385790	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:109385790C>T	uc001dwa.2	-	6	1614	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	AKNAD1_uc010ovb.1_Missense_Mutation_p.E156K|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	449	Potential.									ovary(3)	3						ATTGTTGATTCGTGCTTGTGG	0.488000													60	43					0	0	0.000781405	0	0
CLCC1	23155	broad.mit.edu	37	1	109479864	109479865	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:109479864_109479865GG>TT	uc001dwe.1	-	10	1309_1310	c.1217_1218CC>AA	c.(1216-1218)CCC>CAA	p.P406Q	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.P406Q|CLCC1_uc001dwg.1_Missense_Mutation_p.P356Q|CLCC1_uc009wes.1_Missense_Mutation_p.P285Q|CLCC1_uc009wet.1_Missense_Mutation_p.P221Q	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	406						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		CTTGCTCAGTGGGGCCCATTTG	0.500000													12	612					0	0	6.4e-05	0	0
KCND3	3752	broad.mit.edu	37	1	112524287	112524287	+	Silent	SNP	G	A	A	rs150934088		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:112524287G>A	uc001ebu.1	-	2	1542	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	KCND3_uc001ebv.1_Silent_p.I354I	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	354						sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		ACGAGGCAGGGATGCTTGTGA	0.542000													14	16					0	0	0.000219431	0	0
NBPF7	343505	broad.mit.edu	37	1	120378786	120378787	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:120378786_120378787CG>AT	uc010oxk.1	-	7	1580_1581	c.959_960CG>AT	c.(958-960)CCG>CAT	p.P320H		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	320	NBPF 2.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		CCCTTTCCTCCGGGGAGTCCTG	0.480000													8	312					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120436620	120436621	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:120436620_120436621GG>TT	uc001eij.2	-	1	2493_2494	c.2339_2340CC>AA	c.(2338-2340)CCC>CAA	p.P780Q		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	780	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TCTTTGCTTTGGGTCGTTTACT	0.366000													15	552					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120437807	120437808	+	Nonsense_Mutation	DNP	CC	AA	AA	rs141390897	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:120437807_120437808CC>AA	uc001eij.2	-	1	1306_1307	c.1152_1153GG>TT	c.(1150-1155)TCGGGA>TCTTGA	p.G385*		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	385	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CATGTTGCTCCCGAAGAGATAT	0.411000													13	670					0	0	6.4e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120510169	120510169	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:120510169C>T	uc001eik.2	-	8	1596	c.1340G>A	c.(1339-1341)GGT>GAT	p.G447D	NOTCH2_uc001eil.2_Missense_Mutation_p.G447D|NOTCH2_uc001eim.3_Missense_Mutation_p.G364D	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	447	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCTGCATAACCCTTCAGACA	0.478000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				161	197					0	0	0.000781405	0	0
HFE2	148738	broad.mit.edu	37	1	145416872	145416872	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:145416872C>T	uc001eni.2	+	4	1542	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.S180F|HFE2_uc001enk.2_Missense_Mutation_p.S293F|HFE2_uc001enl.2_Missense_Mutation_p.S180F	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	406					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTTCCTCTTTCCTCAGCAACC	0.522000													50	66					0	0	0.000781405	0	0
SPRR1B	6699	broad.mit.edu	37	1	153004998	153004998	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:153004998C>T	uc001fba.2	+	2	241	c.177C>T	c.(175-177)CCC>CCT	p.P59P	SPRR1B_uc009wnx.1_Intron	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	59	6 X 8 AA approximate tandem repeats.|4.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTGCCAGCCCAAGGTTCCAG	0.617000													34	50					0	0	0.000692331	0	0
S100A7A	338324	broad.mit.edu	37	1	153391753	153391753	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:153391753G>A	uc001fbt.1	+	3	331	c.274G>A	c.(274-276)GGA>AGA	p.G92R		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	92						cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCAGAGCCATGGAGCGGCGCC	0.532000													19	29					0	0	0.000132079	0	0
ADAR	103	broad.mit.edu	37	1	154557721	154557721	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:154557721G>A	uc001ffh.2	-	14	3615	c.3415C>T	c.(3415-3417)CTG>TTG	p.L1139L	ADAR_uc001ffj.2_Silent_p.L1094L|ADAR_uc001ffi.2_Silent_p.L1113L|ADAR_uc001ffk.2_Silent_p.L844L	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	1139	A to I editase.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GTACCGTCCAGGATCTCCAGG	0.542000													51	63					0	0	0.000781405	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576414	158576414	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:158576414C>T	uc010pio.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					TGTACCTCTTCCTTTCCTTCC	0.517000													27	46					0	0	0.000227799	0	0
SPTA1	6708	broad.mit.edu	37	1	158618345	158618345	+	Missense_Mutation	SNP	C	T	T	rs148714399	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:158618345C>T	uc001fst.1	-	26	3867	c.3668G>A	c.(3667-3669)CGA>CAA	p.R1223Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1223	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTCATGCCGTCGCTGAAGAGC	0.507000													23	27					0	0	0.00047179	0	0
SPTA1	6708	broad.mit.edu	37	1	158654952	158654952	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:158654952C>T	uc001fst.1	-	2	409	c.210G>A	c.(208-210)ATG>ATA	p.M70I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	70	Spectrin 2.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGACTTTCTCCATGATCCACT	0.299000													9	6					0	0	0.000274275	0	0
SELL	6402	broad.mit.edu	37	1	169660933	169660933	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:169660933G>A	uc001ggk.2	-	9	1309	c.1111C>T	c.(1111-1113)CCA>TCA	p.P371S	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.P324S	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	371	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					ATTTAATATGGGTCATTCATA	0.323000													8	11					0	0	0.000442599	0	0
SELE	6401	broad.mit.edu	37	1	169698386	169698386	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:169698386G>A	uc001ggm.3	-	7	1188	c.1031C>T	c.(1030-1032)CCA>CTA	p.P344L	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	344	Extracellular (Potential).|Sushi 3.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					AACCTGGGCTGGTCCCTGCAA	0.488000													16	41					0	0	0.000566183	0	0
PAPPA2	60676	broad.mit.edu	37	1	176659394	176659394	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:176659394C>T	uc001gkz.2	+	5	3423	c.2259C>T	c.(2257-2259)TCC>TCT	p.S753S	PAPPA2_uc001gky.1_Silent_p.S753S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	753	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AAAGAGAATCCTGCAATGACC	0.547000													38	44					0	0	0.000270559	0	0
PAPPA2	60676	broad.mit.edu	37	1	176734898	176734898	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:176734898C>T	uc001gkz.2	+	15	5412	c.4248C>T	c.(4246-4248)CTC>CTT	p.L1416L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1416	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCCCAGGTCTCATGAAGTGTG	0.527000													45	48					0	0	0.000680045	0	0
CACNA1E	777	broad.mit.edu	37	1	181724450	181724450	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:181724450C>T	uc001gow.2	+	28	4071	c.3906C>T	c.(3904-3906)ATC>ATT	p.I1302I	CACNA1E_uc009wxs.2_Silent_p.I1190I|CACNA1E_uc001gox.1_Silent_p.I528I|CACNA1E_uc009wxt.2_Silent_p.I528I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1302	III.|Helical; Name=S5 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCATGTTCATCTTTGCTGTCA	0.483000													47	74					0	0	0.000781405	0	0
CACNA1E	777	broad.mit.edu	37	1	181732607	181732607	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:181732607G>A	uc001gow.2	+	34	4920	c.4755G>A	c.(4753-4755)AAG>AAA	p.K1585K	CACNA1E_uc009wxs.2_Silent_p.K1473K|CACNA1E_uc001gox.1_Silent_p.K811K|CACNA1E_uc009wxt.2_Silent_p.K811K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1585	Helical; Name=S4 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCCTCATAAAGCTCCTGCGTC	0.473000													24	25					0	0	0.00047179	0	0
CACNA1E	777	broad.mit.edu	37	1	181754859	181754859	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:181754859C>T	uc001gow.2	+	43	5855	c.5690C>T	c.(5689-5691)CCC>CTC	p.P1897L	CACNA1E_uc009wxs.2_Missense_Mutation_p.P1785L|CACNA1E_uc009wxt.2_Missense_Mutation_p.P1123L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1897	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AAAAATGCCCCCATGTTCCAG	0.478000													93	113					0	0	0.000781405	0	0
CFH	3075	broad.mit.edu	37	1	196643044	196643044	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:196643044G>A	uc001gtj.3	+	3	542	c.302G>A	c.(301-303)GGA>GAA	p.G101E	CFH_uc001gti.3_Missense_Mutation_p.G101E|CFH_uc009wyw.2_Missense_Mutation_p.G101E|CFH_uc009wyx.2_Missense_Mutation_p.G101E	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	101	Sushi 2.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CTTACAGGAGGAAATGTGTTT	0.343000													53	51					0	0	0.000781405	0	0
CFHR4	10877	broad.mit.edu	37	1	196857321	196857321	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:196857321C>T	uc001gto.2	+	1	110	c.41C>T	c.(40-42)TCC>TTC	p.S14F	CFHR4_uc009wyy.2_Missense_Mutation_p.S14F|CFHR4_uc001gtp.2_Missense_Mutation_p.S14F	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	14						extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TTGTGGGTTTCCTGTGCTAAT	0.343000													11	16					0	0	0.000151284	0	0
CFHR5	81494	broad.mit.edu	37	1	196952032	196952032	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:196952032C>T	uc001gts.3	+	2	204	c.76C>T	c.(76-78)CCA>TCA	p.P26S		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	26	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TTGTGATTTTCCAAAAATACA	0.308000													14	34					0	0	0.000308642	0	0
CRB1	23418	broad.mit.edu	37	1	197396720	197396720	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:197396720G>A	uc001gtz.2	+	7	2400	c.2265G>A	c.(2263-2265)TTG>TTA	p.L755L	CRB1_uc010poz.1_Silent_p.L686L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.L643L|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.L236L|CRB1_uc001gub.1_Silent_p.L404L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	755	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTCTAGCTTTGGAAAACAGCA	0.433000													12	16					0	0	0.00010058	0	0
CACNA1S	779	broad.mit.edu	37	1	201063042	201063042	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:201063042C>T	uc001gvv.2	-	3	593	c.366G>A	c.(364-366)TGG>TGA	p.W122*		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	122	Helical; Name=S3 of repeat I; (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCAGCACATTCCAGCCACTGC	0.547000													26	33					0	0	0.000184323	0	0
GPR37L1	9283	broad.mit.edu	37	1	202097202	202097202	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:202097202A>C	uc001gxj.2	+	2	1027	c.964A>C	c.(964-966)ATC>CTC	p.I322L		NM_004767	NP_004758	O60883	ETBR2_HUMAN	G-protein coupled receptor 37 like 1 precursor	322	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2						CTGCCTGCCCATCCTCTTCAC	0.607000													23	20					0	0	0.000878237	0	0
MYBPH	4608	broad.mit.edu	37	1	203140242	203140242	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:203140242C>T	uc001gzh.1	-	6	939	c.880G>A	c.(880-882)GGC>AGC	p.G294S	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	294	Fibronectin type-III 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		TCTGTGTTGCCTGTGTCCTGG	0.607000													22	48					0	0	0.000586117	0	0
FAIM3	9214	broad.mit.edu	37	1	207087397	207087397	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:207087397C>T	uc001hey.2	-	2	259	c.80G>A	c.(79-81)GGG>GAG	p.G27E	FAIM3_uc010prz.1_Intron|FAIM3_uc010psa.1_5'UTR|FAIM3_uc010psb.1_Missense_Mutation_p.G27E	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	27	Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					GCCCAGCTCCCCCTCTACCTT	0.468000													42	47					0	0	0.000509022	0	0
LAMB3	3914	broad.mit.edu	37	1	209796360	209796360	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:209796360G>A	uc001hhg.2	-	16	2913	c.2523C>T	c.(2521-2523)GGC>GGT	p.G841G	LAMB3_uc009xco.2_Silent_p.G841G|LAMB3_uc001hhh.2_Silent_p.G841G|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	841	Domain I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GGGCATTGAAGCCCCGCAGCT	0.667000													55	60					0	0	0.000781405	0	0
KCNH1	3756	broad.mit.edu	37	1	210856840	210856840	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:210856840G>A	uc001hib.2	-	11	2923	c.2753C>T	c.(2752-2754)CCT>CTT	p.P918L	KCNH1_uc001hic.2_Missense_Mutation_p.P891L	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	918	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CGTCTGCTCAGGGATGGGGTA	0.572000													39	22					0	0	0.000953801	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717494	222717494	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:222717494T>C	uc001hnh.1	-	2	417	c.359A>G	c.(358-360)GAA>GGA	p.E120G		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	120					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CTGGGTGTTTTCGGCGTCGTA	0.567000													139	171					0	0	0.000781405	0	0
MIA3	375056	broad.mit.edu	37	1	222818929	222818930	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:222818929_222818930GG>TT	uc001hnl.2	+	7	3520_3521	c.3511_3512GG>TT	c.(3511-3513)GGG>TTG	p.G1171L	MIA3_uc009xea.1_Missense_Mutation_p.G1007L|MIA3_uc001hnm.2_Missense_Mutation_p.G49L	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1171	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TGTTCAGCCTGGGCCTGATTTT	0.366000													18	736					0	0	6.4e-05	0	0
AIDA	64853	broad.mit.edu	37	1	222860273	222860274	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:222860273_222860274GG>TT	uc001hnn.2	-	6	663_664	c.458_459CC>AA	c.(457-459)CCC>CAA	p.P153Q	AIDA_uc001hno.2_RNA|AIDA_uc010pus.1_Missense_Mutation_p.P129Q	NM_022831	NP_073742	Q96BJ3	AIDA_HUMAN	axin interactor, dorsalization associated	153					dorsal/ventral pattern formation|negative regulation of JNK cascade|negative regulation of JUN kinase activity|regulation of protein homodimerization activity						0						GATACCTACCGGGAACTCTAGC	0.416000													6	213					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223176933	223176934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:223176933_223176934GG>TT	uc001hnu.1	+	8	2341_2342	c.2194_2195GG>TT	c.(2194-2196)GGG>TTG	p.G732L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	732	Helical; (Potential).				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGTAGGTGGGGCCTACATT	0.426000													20	628					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223177005	223177006	+	Missense_Mutation	DNP	CG	AT	AT	rs148437031	byFrequency	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:223177005_223177006CG>AT	uc001hnu.1	+	8	2413_2414	c.2266_2267CG>AT	c.(2266-2268)CGG>ATG	p.R756M		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	756					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CCAGGTGTTCCGGTCGTCCCAT	0.460000													10	571					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223178204	223178205	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:223178204_223178205CC>AA	uc001hnu.1	+	8	3612_3613	c.3465_3466CC>AA	c.(3463-3468)TCCCAT>TCAAAT	p.H1156N		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1156					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		GTGCCTTTTCCCATGCCTTGTC	0.475000													13	568					0	0	6.4e-05	0	0
KCNK1	3775	broad.mit.edu	37	1	233802610	233802610	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:233802610G>A	uc010pxo.1	+	2	793	c.625G>A	c.(625-627)GAC>AAC	p.D209N	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	209						voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	CCTGGAGGATGACTGGAACTT	0.507000													44	64					0	0	0.000781405	0	0
AHCTF1	25909	broad.mit.edu	37	1	247040330	247040330	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:247040330G>A	uc001ibu.1	-	22	2866	c.2859C>T	c.(2857-2859)TTC>TTT	p.F953F	AHCTF1_uc001ibv.1_Silent_p.F962F|AHCTF1_uc009xgs.1_5'UTR|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	953	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GCACTAAAAGGAATTCATGAT	0.348000													30	24					0	0	0.000227799	0	0
OR14A16	284532	broad.mit.edu	37	1	247978618	247978618	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:247978618G>A	uc001idm.1	-	1	414	c.414C>T	c.(412-414)ACC>ACT	p.T138T		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	138	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTTGGACACAGGTGCTCCTGT	0.527000													37	48					0	0	0.00058488	0	0
OR2T8	343172	broad.mit.edu	37	1	248084415	248084415	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:248084415C>T	uc010pzc.1	+	1	96	c.96C>T	c.(94-96)ATC>ATT	p.I32I		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TTCTGAGTATCGTTTTGACCT	0.483000													22	35					0	0	0.000147802	0	0
OR2T34	127068	broad.mit.edu	37	1	248737333	248737333	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr1:248737333G>A	uc001iep.1	-	1	726	c.726C>T	c.(724-726)GCC>GCT	p.A242A		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGTGGCCAAGGCCTTCCTGC	0.567000													39	82					0	0	0.000374591	0	0
UPF2	26019	broad.mit.edu	37	10	12071318	12071319	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:12071318_12071319GG>TT	uc001ila.2	-	2	1044_1045	c.570_571CC>AA	c.(568-573)TCCCAT>TCAAAT	p.H191N	UPF2_uc001ilb.2_Missense_Mutation_p.H191N|UPF2_uc001ilc.2_Missense_Mutation_p.H191N|UPF2_uc009xiz.1_Missense_Mutation_p.H191N	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	191	MIF4G 1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				TTAAAATCATGGGACAAGGAGT	0.381000													14	644					0	0	6.4e-05	0	0
UPF2	26019	broad.mit.edu	37	10	12077265	12077266	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:12077265_12077266GG>TT	uc001ila.2	-	1	631_632	c.157_158CC>AA	c.(157-159)CCT>AAT	p.P53N	UPF2_uc001ilb.2_Missense_Mutation_p.P53N|UPF2_uc001ilc.2_Missense_Mutation_p.P53N|UPF2_uc009xiz.1_Missense_Mutation_p.P53N	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	53	Glu/Lys-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CTTGTCTTCAGGGGCCTTGCTG	0.441000													12	685					0	0	6.4e-05	0	0
DHTKD1	55526	broad.mit.edu	37	10	12160747	12160748	+	Splice_Site	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:12160747_12160748GG>TT	uc001ild.3	+	15	2502	c.2403_splice	c.e15-1	p.K801_splice		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain						glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			CTGTCCAACAGGGTTAAGACCC	0.376000													13	388					0	0	6.4e-05	0	0
CDC123	8872	broad.mit.edu	37	10	12277080	12277081	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:12277080_12277081GG>TT	uc001ill.2	+	8	807_808	c.523_524GG>TT	c.(523-525)GGG>TTG	p.G175L	CDC123_uc001ilm.2_Missense_Mutation_p.G175L	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	175					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						ATTGATTCCTGGGGCTGAGTTT	0.332000													12	645					0	0	6.4e-05	0	0
CUBN	8029	broad.mit.edu	37	10	16960672	16960672	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:16960672G>A	uc001ioo.2	-	45	7001	c.6949C>T	c.(6949-6951)CGA>TGA	p.R2317*		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2317	CUB 16.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTGTCAGATCGAAATCTCAAA	0.353000													16	31					0	0	0.000958276	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687663	27687663	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:27687663G>A	uc001itu.2	-	4	1982	c.1864C>T	c.(1864-1866)CAT>TAT	p.H622Y		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	622	Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TCCTGCACATGGAAACACCCA	0.373000													34	34					0	0	0.000814825	0	0
MPP7	143098	broad.mit.edu	37	10	28420578	28420578	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:28420578C>T	uc001iua.1	-	8	762	c.358G>A	c.(358-360)GAC>AAC	p.D120N	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.D120N|MPP7_uc009xla.2_Missense_Mutation_p.D120N|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	120	L27 2.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						AACACTGGGTCGTAATTCTTC	0.338000													29	34					0	0	0.000409698	0	0
SYT15	83849	broad.mit.edu	37	10	46967721	46967721	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:46967721C>T	uc001jea.2	-	4	509	c.356G>A	c.(355-357)GGA>GAA	p.G119E	SYT15_uc001jdz.2_Missense_Mutation_p.G119E|SYT15_uc001jeb.2_5'UTR|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	119	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						ACATGCATCTCCTATGACAGA	0.637000													26	114					0	0	0.000227799	0	0
ANK3	288	broad.mit.edu	37	10	61846624	61846624	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:61846624C>T	uc001jky.2	-	30	3751	c.3559G>A	c.(3559-3561)GAA>AAA	p.E1187K	ANK3_uc001jkw.2_Missense_Mutation_p.E321K|ANK3_uc009xpa.2_Missense_Mutation_p.E321K|ANK3_uc001jkx.2_Missense_Mutation_p.E365K|ANK3_uc010qih.1_Missense_Mutation_p.E1188K|ANK3_uc001jkz.3_Missense_Mutation_p.E1181K|ANK3_uc001jla.1_Missense_Mutation_p.E253K|ANK3_uc001jlb.1_Missense_Mutation_p.E705K	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1187					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCACAATTTCATCTGGAACA	0.353000													7	26					0	0	8.12818e-05	0	0
CTNNA3	29119	broad.mit.edu	37	10	67748450	67748450	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:67748450C>T	uc009xpn.1	-	16	2388	c.2265G>A	c.(2263-2265)CAG>CAA	p.Q755Q	CTNNA3_uc001jmw.2_Silent_p.Q755Q	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	755					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGTAACTCACCTGATTAGCAA	0.378000													36	43					0	0	0.000191422	0	0
ANAPC16	119504	broad.mit.edu	37	10	73992860	73992860	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:73992860C>T	uc001jsv.2	+	4	437	c.319C>T	c.(319-321)CCC>TCC	p.P107S	ANAPC16_uc001jsw.2_Missense_Mutation_p.P107S	NM_173473	NP_775744	Q96DE5	APC16_HUMAN	hypothetical protein LOC119504	107					cell division|mitosis|protein ubiquitination	anaphase-promoting complex|cytoplasm				ovary(1)	1						GGGATTCACCCCCTCTTCAGG	0.542000													21	25					0	0	0.000132079	0	0
SFTPA1	653509	broad.mit.edu	37	10	81373830	81373830	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:81373830G>A	uc001kap.2	+	6	829	c.708G>A	c.(706-708)AGG>AGA	p.R236R	SFTPA1_uc001kaq.2_Silent_p.R236R|SFTPA1_uc009xry.2_Silent_p.R251R|SFTPA1_uc001kar.2_Silent_p.R236R|SFTPA1_uc010qlt.1_Silent_p.R177R|SFTPA1_uc009xrz.2_Silent_p.R166R|SFTPA1_uc009xsa.2_Silent_p.R236R|SFTPA1_uc009xsf.2_RNA	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	236	C-type lectin.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			GGAATGACAGGAACTGCCTGT	0.582000													37	32					0	0	0.000228196	0	0
KIF20B	9585	broad.mit.edu	37	10	91484826	91484826	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:91484826C>T	uc001kgs.1	+	15	1984	c.1912C>T	c.(1912-1914)CGT>TGT	p.R638C	KIF20B_uc001kgr.1_Missense_Mutation_p.R638C|KIF20B_uc001kgt.1_5'UTR	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	638					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						TGCTGAACGTCGTTTGGCTAT	0.363000													35	36					0	0	0.000270559	0	0
CYP2C9	1559	broad.mit.edu	37	10	96748693	96748693	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:96748693C>T	uc001kka.3	+	9	1406	c.1381C>T	c.(1381-1383)CTG>TTG	p.L461L	CYP2C9_uc009xut.2_Silent_p.L459L	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	461					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	CCTGAAATCTCTGGTTGACCC	0.478000													25	22					0	0	0.000586117	0	0
HPS1	3257	broad.mit.edu	37	10	100190926	100190926	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:100190926G>A	uc010qpf.1	-	7	876	c.630C>T	c.(628-630)TTC>TTT	p.F210F	HPS1_uc001kpi.1_Silent_p.F210F|HPS1_uc001kpj.1_Silent_p.F150F|HPS1_uc001kpk.1_Intron|HPS1_uc009xwb.2_RNA|HPS1_uc010qph.1_Silent_p.F210F|HPS1_uc001kpl.2_Silent_p.F210F	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	210					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		GCACGAGCAGGAAGGCATGCA	0.627000									Hermansky-Pudlak_syndrome				14	12					0	0	0.000219431	0	0
PSD	5662	broad.mit.edu	37	10	104165191	104165191	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:104165191G>A	uc001kvg.1	-	12	2765	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	PSD_uc001kve.1_5'UTR|PSD_uc001kvf.1_Silent_p.F115F|PSD_uc001kvh.1_Silent_p.F367F|PSD_uc009xxd.1_Silent_p.F746F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	746					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		TCAGGTCCAGGAAAGGGCTGG	0.642000													40	49					0	0	0.000509022	0	0
NEURL	9148	broad.mit.edu	37	10	105331330	105331330	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:105331330C>T	uc001kxh.2	+	3	810	c.400C>T	c.(400-402)CAC>TAC	p.H134Y		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	134	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GTCCCGCATCCACCCTGACTC	0.662000													13	9					0	0	0.00010058	0	0
TACC2	10579	broad.mit.edu	37	10	123845365	123845365	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:123845365T>A	uc001lfv.2	+	4	3710	c.3350T>A	c.(3349-3351)TTC>TAC	p.F1117Y	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.F1117Y|TACC2_uc010qtv.1_Missense_Mutation_p.F1117Y	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1117						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTTGCAAGTTTCCCATCAGCT	0.617000													15	43					0	0	0.000422831	0	0
CPXM2	119587	broad.mit.edu	37	10	125521640	125521640	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:125521640G>A	uc001lhk.1	-	11	1850	c.1525C>T	c.(1525-1527)CCT>TCT	p.P509S	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	509					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		AGCACAAAAGGGATTTTTTCC	0.577000													40	48					0	0	0.000319135	0	0
DOCK1	1793	broad.mit.edu	37	10	129237336	129237336	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:129237336C>T	uc001ljt.2	+	49	5107	c.5043C>T	c.(5041-5043)TCC>TCT	p.S1681S	DOCK1_uc010qun.1_Silent_p.S1702S|DOCK1_uc009yaq.2_Silent_p.S676S	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1681					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		ACTCCAGGTCCCAGGACAAGC	0.368000													3	1					0	0	6.4e-05	0	0
GPR123	84435	broad.mit.edu	37	10	134896165	134896165	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr10:134896165C>T	uc001llw.2	+	6	1251	c.1251C>T	c.(1249-1251)GGC>GGT	p.G417G				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		AGACCCACGGCCTTGGCCTGA	0.607000													8	17					0	0	0.000157383	0	0
PHRF1	57661	broad.mit.edu	37	11	609395	609396	+	Silent	DNP	CC	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:609395_609396CC>TT	uc001lqe.2	+	14	4070_4071	c.3939_3940CC>TT	c.(3937-3942)AGCCTG>AGTTTG	p.1313_1314SL>SL	PHRF1_uc010qwc.1_Silent_p.1312_1313SL>SL|PHRF1_uc010qwd.1_Silent_p.1311_1312SL>SL|PHRF1_uc010qwe.1_Silent_p.1309_1310SL>SL|PHRF1_uc009ybz.1_Silent_p.1103_1104SL>SL|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	1313_1314							RNA polymerase binding|zinc ion binding				0						CCCCAGCCAGCCTGGCCGTGGC	0.629000													6	12					0	0	6.4e-05	0	0
MUC6	4588	broad.mit.edu	37	11	1017526	1017526	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:1017526G>C	uc001lsw.2	-	31	5326	c.5275C>G	c.(5275-5277)CCT>GCT	p.P1759A		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1759	Thr-rich.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTGACTTCAGGATGGTGTGTG	0.562000													6	661					0	0	0.000157383	0	0
MUC5B	727897	broad.mit.edu	37	11	1264798	1264798	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:1264798C>T	uc009ycr.1	+	48	8728	c.8602C>T	c.(8602-8604)CCT>TCT	p.P2868S	MUC5B_uc001ltb.2_Missense_Mutation_p.P2233S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2230	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CATCACAGAGCCTTCCACGGT	0.652000													12	10					0	0	0.000958276	0	0
MUC5B	727897	broad.mit.edu	37	11	1268950	1268950	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:1268950G>A	uc009ycr.1	+	50	12550	c.12424G>A	c.(12424-12426)GGC>AGC	p.G4142S	MUC5B_uc001ltb.2_Missense_Mutation_p.G3617S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3614	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 6.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCAGCCCCTGGGCCTCGAGTG	0.682000													30	7					0	0	0.000491102	0	0
OR51E2	81285	broad.mit.edu	37	11	4703603	4703603	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:4703603G>A	uc001lzk.2	-	2	583	c.339C>T	c.(337-339)ATC>ATT	p.I113I		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGCCAGCAGGATGGTGGATT	0.517000													22	20					0	0	0.000175454	0	0
OR52E2	119678	broad.mit.edu	37	11	5079910	5079910	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:5079910C>T	uc010qyw.1	-	1	948	c.948G>A	c.(946-948)AAG>AAA	p.K316K		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GGTACTCTTCCTTTTCCATTC	0.338000													25	38					0	0	0.000586117	0	0
OR51B6	390058	broad.mit.edu	37	11	5372888	5372888	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:5372888C>T	uc010qzb.1	+	1	151	c.151C>T	c.(151-153)CAT>TAT	p.H51Y	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGAATGATCATAACCTCCA	0.463000													26	33					0	0	0.000227799	0	0
OR6A2	8590	broad.mit.edu	37	11	6816406	6816406	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:6816406G>A	uc001mes.1	-	1	734	c.534C>T	c.(532-534)ATC>ATT	p.I178I		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AGTGGTTGATGATGTTGGGGC	0.463000													26	30					0	0	0.000184323	0	0
FAR1	84188	broad.mit.edu	37	11	13736088	13736088	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:13736088C>T	uc001mld.2	+	9	1143	c.988C>T	c.(988-990)CCT>TCT	p.P330S		NM_032228	NP_115604	Q8WVX9	FACR1_HUMAN	fatty acyl CoA reductase 1	330					ether lipid biosynthetic process	integral to membrane|peroxisomal matrix|peroxisomal membrane	protein binding			ovary(1)|skin(1)	2						CAAGAGGAATCCTCTCGAACA	0.373000													8	14					0	0	0.000274275	0	0
SAAL1	113174	broad.mit.edu	37	11	18110953	18110953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:18110953G>A	uc001mnq.2	-	7	744	c.694C>T	c.(694-696)CAA>TAA	p.Q232*	SAAL1_uc001mnr.2_Nonsense_Mutation_p.Q232*|SAAL1_uc001mns.2_RNA|SAAL1_uc009yhf.2_Nonsense_Mutation_p.Q232*	NM_138421	NP_612430	Q96ER3	SAAL1_HUMAN	serum amyloid A-like 1	232					acute-phase response	extracellular region	binding				0						TCCTGGGGTTGGTCCAGAGGC	0.493000													22	25					0	0	0.000375601	0	0
SAA1	6288	broad.mit.edu	37	11	18288502	18288502	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:18288502C>T	uc010rda.1	+	2	291	c.68C>T	c.(67-69)TCG>TTG	p.S23L	SAA1_uc001moa.3_RNA|SAA1_uc010rdb.1_Missense_Mutation_p.S23L	NM_000331	NP_000322	P02735	SAA_HUMAN	serum amyloid A1 preproprotein	23					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	AGCTTCTTTTCGTTCCTTGGC	0.498000													27	53					0	0	0.000409698	0	0
ANO3	63982	broad.mit.edu	37	11	26655833	26655833	+	Silent	SNP	C	T	T	rs144906007		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:26655833C>T	uc001mqt.3	+	19	2101	c.1956C>T	c.(1954-1956)TCC>TCT	p.S652S	ANO3_uc010rdr.1_Silent_p.S636S|ANO3_uc010rds.1_Silent_p.S491S|ANO3_uc010rdt.1_Silent_p.S506S	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	652	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TAAACAGTTCCATCTTCTATA	0.373000													11	7					0	0	0.00010058	0	0
QSER1	79832	broad.mit.edu	37	11	32954769	32954769	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:32954769C>T	uc001mty.2	+	4	1845	c.1578C>T	c.(1576-1578)TCC>TCT	p.S526S	QSER1_uc001mtz.1_Silent_p.S287S|QSER1_uc001mua.2_Silent_p.S31S	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	526	Ser-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					CTTTTGCATCCTCTACTCATT	0.403000													34	41					0	0	0.000191422	0	0
DDB2	1643	broad.mit.edu	37	11	47259440	47259440	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:47259440C>T	uc001neb.2	+	8	1271	c.1076C>T	c.(1075-1077)CCT>CTT	p.P359L	DDB2_uc001nec.2_RNA|DDB2_uc009yli.1_Missense_Mutation_p.P295L|DDB2_uc001ned.2_RNA|DDB2_uc001nee.2_Missense_Mutation_p.P170L|DDB2_uc001nef.2_Missense_Mutation_p.P156L|DDB2_uc001neg.2_Missense_Mutation_p.P218L|DDB2_uc001neh.2_RNA	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	359					nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						TACCCAGATCCTAATTTCAAA	0.488000			Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				41	69					0	0	0.000509022	0	0
OR4C12	283093	broad.mit.edu	37	11	50003384	50003384	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:50003384G>A	uc010ria.1	-	1	654	c.654C>T	c.(652-654)ATC>ATT	p.I218I		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	218	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ATCTCAAGATGATCACATAGG	0.403000													12	7					0	0	6.40141e-05	0	0
OR4A16	81327	broad.mit.edu	37	11	55111634	55111634	+	Missense_Mutation	SNP	C	T	T	rs78935813		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:55111634C>T	uc010rie.1	+	1	958	c.958C>T	c.(958-960)CCT>TCT	p.P320S		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						CATATTTATTCCTAGTTCTAA	0.348000													4	7					0	0	3.59834e-05	0	0
OR4C15	81309	broad.mit.edu	37	11	55322479	55322479	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:55322479G>A	uc010rig.1	+	1	697	c.697G>A	c.(697-699)GAC>AAC	p.D233N		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTTATGTGTGACTTGTACCC	0.458000										HNSCC(20;0.049)			4	8					0	0	0.00024832	0	0
OR4P4	81300	broad.mit.edu	37	11	55406440	55406440	+	Silent	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:55406440T>C	uc010rij.1	+	1	607	c.607T>C	c.(607-609)TTA>CTA	p.L203L		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TAATTCAGGCTTAATTGCTTT	0.373000													23	33					0	0	0.000229342	0	0
OR4S2	219431	broad.mit.edu	37	11	55418847	55418847	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:55418847C>T	uc001nhs.1	+	1	468	c.468C>T	c.(466-468)ATC>ATT	p.I156I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				ACTCCATTATCCAAGTGGCTC	0.433000													25	26					0	0	0.00047179	0	0
CLP1	10978	broad.mit.edu	37	11	57428555	57428555	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:57428555C>T	uc001nkw.2	+	3	1064	c.925C>T	c.(925-927)CGA>TGA	p.R309*	CLP1_uc010rjw.1_Nonsense_Mutation_p.R245*|CLP1_uc009yml.2_Nonsense_Mutation_p.R309*	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	309					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						TTATGGATTCCGAGGCTGTTT	0.502000													80	91					0	0	0.000781405	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141131	63141131	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:63141131C>T	uc001nww.2	+	3	790	c.522C>T	c.(520-522)TTC>TTT	p.F174F	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	174	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						GGAGAAGGTTCGTGCTCAGAT	0.458000													5	10					0	0	3.59834e-05	0	0
ATG2A	23130	broad.mit.edu	37	11	64663933	64663933	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:64663933C>T	uc001obx.2	-	39	5542	c.5427_splice	c.e39+1	p.Q1809_splice	ATG2A_uc001obw.2_Splice_Site_p.Q574_splice	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A								protein binding			ovary(1)|central_nervous_system(1)	2						CACCCACTCACCTGGATAGCC	0.567000													8	6					0	0	0.000157383	0	0
PC	5091	broad.mit.edu	37	11	66617523	66617523	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:66617523C>A	uc001ojn.1	-	18	2832	c.2783G>T	c.(2782-2784)CGG>CTG	p.R928L	PC_uc001ojo.1_Missense_Mutation_p.R928L|PC_uc001ojp.1_Missense_Mutation_p.R928L|PC_uc001ojm.1_5'Flank	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	928					gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GGCCTCTGCCCGGCTCAATCC	0.637000													8	84					0.000157383	0.00171611	0.000157383	1	0
ANO1	55107	broad.mit.edu	37	11	69995855	69995855	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:69995855G>A	uc001opj.2	+	12	1603	c.1298G>A	c.(1297-1299)CGA>CAA	p.R433Q	ANO1_uc001opk.1_Missense_Mutation_p.R405Q|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.R168Q	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	433	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity	p.R433*(1)		ovary(1)|pancreas(1)	2						AAACAGATGCGACTCAACTAC	0.537000													10	12					0	0	0.00010058	0	0
SHANK2	22941	broad.mit.edu	37	11	70332561	70332561	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:70332561C>T	uc001oqc.2	-	21	3915	c.3837G>A	c.(3835-3837)GAG>GAA	p.E1279E	SHANK2_uc010rqn.1_Silent_p.E691E|SHANK2_uc001opz.2_Silent_p.E684E|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	900					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CGTACTTGTTCTCCGTCTCCT	0.597000													30	41					0	0	0.000339439	0	0
NARS2	79731	broad.mit.edu	37	11	78147746	78147746	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:78147746G>A	uc001ozi.2	-	14	1780	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F	NARS2_uc010rsq.1_Silent_p.F241F	NM_024678	NP_078954	Q96I59	SYNM_HUMAN	asparaginyl-tRNA synthetase 2, mitochondrial	468					asparaginyl-tRNA aminoacylation	mitochondrial matrix	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding			ovary(2)	2	all_cancers(14;2.63e-17)|all_epithelial(13;1.85e-19)				L-Asparagine(DB00174)	GAAACCTTGGGAAAGGGATAA	0.458000													108	131					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92543181	92543181	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:92543181C>T	uc001pdj.3	+	12	9437	c.9420C>T	c.(9418-9420)GTC>GTT	p.V3140V		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3140	Cadherin 29.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACACCTGTGTCTATGAGAACA	0.532000										TCGA Ovarian(4;0.039)			123	171					0	0	0.000781405	0	0
TRPC6	7225	broad.mit.edu	37	11	101375406	101375406	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:101375406C>T	uc001pgk.3	-	2	719	c.294G>A	c.(292-294)GAG>GAA	p.E98E	TRPC6_uc009ywy.2_Silent_p.E98E|TRPC6_uc009ywz.1_Silent_p.E98E	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	98	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		AGCGTTCCTCCTCTATAGATA	0.483000													28	39					0	0	0.000720815	0	0
MMP3	4314	broad.mit.edu	37	11	102710938	102710938	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:102710938G>A	uc001phj.1	-	6	901	c.836C>T	c.(835-837)CCT>CTT	p.P279L		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	279					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	TGGAGGGACAGGTTCCGTGGG	0.517000													15	22					0	0	0.000566183	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120350843	120350843	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:120350843C>T	uc001pxl.1	+	38	3948	c.3941C>T	c.(3940-3942)CCC>CTC	p.P1314L	ARHGEF12_uc009zat.2_Missense_Mutation_p.P1295L|ARHGEF12_uc009zau.1_Missense_Mutation_p.P1211L	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	1314					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		GGACATATGCCCTTTAGAACT	0.483000			T	MLL	AML								45	64					0	0	0.000781405	0	0
LOC341056	341056	broad.mit.edu	37	11	122888658	122888658	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:122888658C>T	uc010rzt.1	+	1		c.385C>T				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						AATCTTAACCCCATGGTGGAT	0.473000													42	56					0	0	0.000680045	0	0
VWA5A	4013	broad.mit.edu	37	11	123988943	123988943	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:123988943C>T	uc001pzu.2	+	5	503	c.294C>T	c.(292-294)TTC>TTT	p.F98F	VWA5A_uc001pzr.2_Silent_p.F98F|VWA5A_uc001pzs.2_Silent_p.F98F|VWA5A_uc010sae.1_Silent_p.F114F|VWA5A_uc001pzt.2_Silent_p.F98F	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	98	VIT.									upper_aerodigestive_tract(1)|ovary(1)	2						ACCAGGCCTTCTTATTGGAGG	0.567000													18	31					0	0	0.00074312	0	0
OR8D2	283160	broad.mit.edu	37	11	124189444	124189444	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:124189444G>C	uc010sah.1	-	1	650	c.650C>G	c.(649-651)TCT>TGT	p.S217C		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GAAAGCATAAGAGATAAGGAC	0.448000													13	22					0	0	0.00010058	0	0
EI24	9538	broad.mit.edu	37	11	125450000	125450000	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:125450000G>A	uc001qca.2	+	8	815	c.573G>A	c.(571-573)GTG>GTA	p.V191V	EI24_uc001qcb.2_Silent_p.V191V|EI24_uc010sbd.1_RNA|EI24_uc009zbl.2_Silent_p.V191V|EI24_uc001qcc.2_RNA|EI24_uc010sbe.1_Silent_p.V177V|EI24_uc010sbf.1_RNA	NM_004879	NP_004870	O14681	EI24_HUMAN	etoposide induced 2.4 isoform 1	191	Helical; (Potential).				apoptosis|autophagy|induction of apoptosis|negative regulation of cell growth	endoplasmic reticulum membrane|integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.64e-07)|OV - Ovarian serous cystadenocarcinoma(99;0.0975)		GAATGTTTGTGAGTCTCTTTC	0.433000													133	168					0	0	0.000781405	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128839225	128839225	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr11:128839225C>G	uc009zcp.2	-	22	5841	c.5841G>C	c.(5839-5841)GAG>GAC	p.E1947D	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.E906D|ARHGAP32_uc001qez.2_Missense_Mutation_p.E1598D	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1947	Interaction with FYN.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GTCGCTCCATCTCTTTGGAGA	0.517000													40	38					0	0	0.000374591	0	0
B4GALNT3	283358	broad.mit.edu	37	12	667718	667718	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:667718C>T	uc001qii.1	+	18	2652	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	B4GALNT3_uc001qik.1_Silent_p.F433F	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	884	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			ACATCCACTTCCCAGCTGGAG	0.597000													46	36					0	0	0.000781405	0	0
CACNA1C	775	broad.mit.edu	37	12	2774773	2774773	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:2774773C>T	uc009zdu.1	+	38	4882	c.4569C>T	c.(4567-4569)ATC>ATT	p.I1523I	CACNA1C_uc009zdv.1_Silent_p.I1472I|CACNA1C_uc001qkb.2_Silent_p.I1475I|CACNA1C_uc001qkc.2_Silent_p.I1475I|CACNA1C_uc001qke.2_Silent_p.I1464I|CACNA1C_uc001qkf.2_Silent_p.I1464I|CACNA1C_uc001qjz.2_Silent_p.I1475I|CACNA1C_uc001qkd.2_Silent_p.I1475I|CACNA1C_uc001qkg.2_Silent_p.I1462I|CACNA1C_uc009zdw.1_Silent_p.I1497I|CACNA1C_uc001qkh.2_Silent_p.I1464I|CACNA1C_uc001qkl.2_Silent_p.I1523I|CACNA1C_uc001qkn.2_Silent_p.I1475I|CACNA1C_uc001qko.2_Silent_p.I1495I|CACNA1C_uc001qkp.2_Silent_p.I1475I|CACNA1C_uc001qkr.2_Silent_p.I1492I|CACNA1C_uc001qku.2_Silent_p.I1475I|CACNA1C_uc001qkq.2_Silent_p.I1503I|CACNA1C_uc001qks.2_Silent_p.I1475I|CACNA1C_uc001qkt.2_Silent_p.I1475I|CACNA1C_uc001qki.1_Silent_p.I1211I|CACNA1C_uc001qkj.1_Silent_p.I1211I|CACNA1C_uc001qkk.1_Silent_p.I1211I|CACNA1C_uc001qkm.1_Silent_p.I1200I|CACNA1C_uc010sea.1_Silent_p.I166I	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1523	Phenylalkylamine binding (By similarity).|Dihydropyridine binding (By similarity).|Helical; Name=S6 of repeat IV; (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TAGCTGTCATCATGGACAACT	0.512000													35	37					0	0	0.000228196	0	0
KCNA1	3736	broad.mit.edu	37	12	5020851	5020851	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:5020851C>T	uc001qnh.2	+	2	1412	c.307C>T	c.(307-309)CGG>TGG	p.R103W		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	103					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CGGCCGCCTGCGGAGGCCGGT	0.617000													19	44					0	0	0.000295444	0	0
CHD4	1108	broad.mit.edu	37	12	6709001	6709001	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:6709001G>A	uc001qpo.2	-	10	1584	c.1420C>T	c.(1420-1422)CAC>TAC	p.H474Y	CHD4_uc001qpn.2_Missense_Mutation_p.H467Y|CHD4_uc001qpp.2_Missense_Mutation_p.H471Y	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	474	PHD-type 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TTCAGGCAGTGGATGTGGTAG	0.542000													31	41					0	0	0.00058488	0	0
A2M	2	broad.mit.edu	37	12	9231867	9231867	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:9231867C>T	uc001qvk.1	-	25	3205	c.3092G>A	c.(3091-3093)CGA>CAA	p.R1031Q	A2M_uc001qvj.1_Missense_Mutation_p.R73Q|A2M_uc009zgk.1_Missense_Mutation_p.R881Q	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	1031					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	CCTGCCATATCGCTCCCCAAA	0.318000													26	33					0	0	0.000147802	0	0
LOC642846	642846	broad.mit.edu	37	12	9453702	9453702	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:9453702C>T	uc010sgp.1	+	10		c.1341C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						GGTGGTGCTGCCCTATCAGAT	0.662000													4	5					0	0	0.00024832	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691202	18691202	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:18691202A>T	uc001rdt.2	+	24	3429	c.3313A>T	c.(3313-3315)ATT>TTT	p.I1105F	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.I1146F|PIK3C2G_uc010sic.1_Missense_Mutation_p.I924F	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1105	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TGCTTATAATATTATCAGAAA	0.363000													7	12					0	0	8.12818e-05	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891833	18891833	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:18891833G>A	uc001rdy.2	+	1	789	c.631G>A	c.(631-633)GAA>AAA	p.E211K	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	211					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GGACCTGAAAGAAAGCTTGGA	0.398000													15	15					0	0	0.000422831	0	0
GYS2	2998	broad.mit.edu	37	12	21721862	21721862	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:21721862C>T	uc001rfb.2	-	5	1015	c.760G>A	c.(760-762)GTG>ATG	p.V254M		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	254					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GTGGTGAACACGTGAGCGCAA	0.428000													25	37					0	0	0.000375601	0	0
ABCC9	10060	broad.mit.edu	37	12	21964988	21964988	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:21964988G>A	uc001rfi.1	-	34	4226	c.4206C>T	c.(4204-4206)TCC>TCT	p.S1402S	ABCC9_uc001rfh.2_Silent_p.S1402S|ABCC9_uc001rfj.1_Silent_p.S1366S	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1402	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CCTACCTAATGGAACCACTGA	0.373000													12	23					0	0	0.00010058	0	0
ABCC9	10060	broad.mit.edu	37	12	22046965	22046965	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:22046965C>T	uc001rfi.1	-	12	1822	c.1802_splice	c.e12+1	p.S601_splice	ABCC9_uc001rfh.2_Splice_Site_p.S601_splice|ABCC9_uc001rfj.1_Splice_Site_p.S601_splice	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9						defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCAGTGCATACCTTATGATGG	0.308000													12	12					0	0	0.00010058	0	0
ITPR2	3709	broad.mit.edu	37	12	26810792	26810792	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:26810792C>T	uc001rhg.2	-	18	2457	c.2040G>A	c.(2038-2040)GAG>GAA	p.E680E		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	680	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GGATGGAGCTCTCCATGGGGT	0.398000													26	27					0	0	0.000720815	0	0
OVCH1	341350	broad.mit.edu	37	12	29596314	29596314	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:29596314C>T	uc001rix.1	-	25	3137	c.3137G>A	c.(3136-3138)GGA>GAA	p.G1046E		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	1046					proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TTTTCCTGGTCCAAATCCTTC	0.348000													32	24					0	0	0.000692331	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42860032	42860032	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:42860032A>G	uc010skv.1	-	6	1026	c.739T>C	c.(739-741)TAT>CAT	p.Y247H	PRICKLE1_uc001rnl.2_Missense_Mutation_p.Y247H|PRICKLE1_uc010skw.1_Missense_Mutation_p.Y247H|PRICKLE1_uc001rnm.2_Missense_Mutation_p.Y247H	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	247	LIM zinc-binding 2.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TACTCCGCATAGAGAGACTCA	0.522000													31	45					0	0	0.000491102	0	0
CCNT1	904	broad.mit.edu	37	12	49087100	49087100	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:49087100G>A	uc001rse.1	-	9	2220	c.1897C>T	c.(1897-1899)CGT>TGT	p.R633C	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.R348C	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	633					cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						TGAGGGACACGAGTTTTACAG	0.488000													21	31					0	0	0.000175454	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50186672	50186672	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:50186672C>T	uc009zlk.2	-	11	3640	c.3438G>A	c.(3436-3438)AAG>AAA	p.K1146K	NCKAP5L_uc001rvc.3_Silent_p.K350K|NCKAP5L_uc001rvb.2_Silent_p.K739K	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	1142	Pro-rich.									central_nervous_system(1)	1						GTGGCTTGGTCTTAGGAAGAT	0.657000													12	8					0	0	6.40141e-05	0	0
LARP4	113251	broad.mit.edu	37	12	50869388	50869389	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:50869388_50869389GG>TT	uc001rwp.1	+	16	2060_2061	c.1916_1917GG>TT	c.(1915-1917)CGG>CTT	p.R639L	LARP4_uc001rwo.1_Missense_Mutation_p.R645L|LARP4_uc001rwq.1_Missense_Mutation_p.R568L|LARP4_uc001rwr.1_Missense_Mutation_p.R568L|LARP4_uc001rws.1_Missense_Mutation_p.R638L|LARP4_uc009zlr.1_Missense_Mutation_p.R438L|LARP4_uc001rwt.1_Missense_Mutation_p.R230L	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	639				R -> Q (in Ref. 1; BAF84435).			nucleotide binding|RNA binding			ovary(1)	1						CAGCCACTACGGGAACTTCGCT	0.470000													11	231					0	0	6.4e-05	0	0
KRT6C	286887	broad.mit.edu	37	12	52865493	52865493	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:52865493C>T	uc001sal.3	-	3	827	c.779G>A	c.(778-780)CGC>CAC	p.R260H		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	260	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		TGCTGCTGTGCGCTTGTTGAT	0.453000													55	66					0	0	0.000781405	0	0
KRT3	3850	broad.mit.edu	37	12	53186124	53186124	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:53186124G>A	uc001say.2	-	5	1153	c.1087C>T	c.(1087-1089)CGC>TGC	p.R363C		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	363	Rod.|Linker 12.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						TCCAGGGAGCGATTATTGTCC	0.522000													12	31					0	0	0.000151284	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54912499	54912499	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:54912499C>A	uc001sgc.3	+	14	1482	c.1403C>A	c.(1402-1404)TCT>TAT	p.S468Y	NCKAP1L_uc010sox.1_Missense_Mutation_p.S10Y|NCKAP1L_uc010soy.1_Missense_Mutation_p.S418Y	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	468					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						ATCCTCTCCTCTCTGAATCTC	0.468000													72	82					7.09011e-46	7.87056e-45	0.000781405	1	0
OR6C74	254783	broad.mit.edu	37	12	55641164	55641164	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:55641164C>T	uc010spg.1	+	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCCTTTTTTTCACCTACATGT	0.378000													28	41					0	0	0.000878237	0	0
DNAJC14	85406	broad.mit.edu	37	12	56221260	56221260	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:56221260G>A	uc001shx.1	-	2	1387	c.1183C>T	c.(1183-1185)CAG>TAG	p.Q395*	DNAJC14_uc001shu.1_Nonsense_Mutation_p.Q395*|DNAJC14_uc009zob.1_Nonsense_Mutation_p.Q395*|DNAJC14_uc001shy.1_Nonsense_Mutation_p.Q395*	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	395					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						CAGCCCCACTGAACTATTCTT	0.552000													47	59					0	0	0.000781405	0	0
COQ10A	93058	broad.mit.edu	37	12	56662922	56662922	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:56662922C>T	uc001sko.3	+	3	622	c.361C>T	c.(361-363)CTG>TTG	p.L121L	COQ10A_uc001skp.3_Silent_p.L89L|COQ10A_uc001skq.3_Silent_p.L104L	NM_144576	NP_653177	Q96MF6	CQ10A_HUMAN	coenzyme Q10 homolog A isoform a	121						mitochondrial inner membrane				ovary(1)	1						TAAGAAGTCTCTGGTGGTATC	0.502000													64	73					0	0	0.000781405	0	0
LRP1	4035	broad.mit.edu	37	12	57579463	57579463	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:57579463G>A	uc001snd.2	+	41	7079	c.6613G>A	c.(6613-6615)GAG>AAG	p.E2205K		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2205	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCTCTACTCAGAGCGCACCAT	0.637000													8	10					0	0	0.000673444	0	0
SLC26A10	65012	broad.mit.edu	37	12	58016407	58016408	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:58016407_58016408GG>TT	uc001spe.2	+	5	1085_1086	c.774_775GG>TT	c.(772-777)GTGGGG>GTTTGG	p.G259W	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_5'Flank	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	259						integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					TCCAGATAGTGGGGCTGTTGCC	0.515000											OREG0021948	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	229					0	0	6.4e-05	0	0
PTPRB	5787	broad.mit.edu	37	12	70946612	70946612	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:70946612C>T	uc001swb.3	-	19	4708	c.4678G>A	c.(4678-4680)GAT>AAT	p.D1560N	PTPRB_uc010sto.1_Missense_Mutation_p.D1470N|PTPRB_uc010stp.1_Missense_Mutation_p.D1470N|PTPRB_uc001swc.3_Missense_Mutation_p.D1778N|PTPRB_uc001swa.3_Missense_Mutation_p.D1690N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1560	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGAGTGGGATCGCATTTTCCA	0.423000													26	26					0	0	0.000147802	0	0
NTS	4922	broad.mit.edu	37	12	86276090	86276090	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:86276090G>A	uc001tag.2	+	4	557	c.450G>A	c.(448-450)CGG>CGA	p.R150R		NM_006183	NP_006174	P30990	NEUT_HUMAN	neurotensin/neuromedin N preproprotein	150					regulation of blood vessel size|signal transduction	extracellular region|soluble fraction|transport vesicle	neuropeptide hormone activity				0						TTCTGAAACGGCAGCTGTATG	0.323000													69	90					0	0	0.000781405	0	0
C12orf12	196477	broad.mit.edu	37	12	91347349	91347349	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:91347349G>A	uc001tbj.2	-	1	1605	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	391										central_nervous_system(1)|pancreas(1)	2						GGCACTTTGGGAATTATCTGC	0.413000													30	37					0	0	0.000692331	0	0
ANKS1B	56899	broad.mit.edu	37	12	99222980	99222980	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:99222980C>T	uc001tge.1	-	19	3455	c.3038G>A	c.(3037-3039)CGA>CAA	p.R1013Q	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc001tgk.2_Missense_Mutation_p.R310Q|ANKS1B_uc010svd.1_Missense_Mutation_p.R19Q|ANKS1B_uc001tgd.1_Intron|ANKS1B_uc009ztq.2_5'UTR|ANKS1B_uc010sve.1_Missense_Mutation_p.R19Q|ANKS1B_uc001tgh.3_Missense_Mutation_p.R19Q|ANKS1B_uc001tgi.2_Missense_Mutation_p.R239Q|ANKS1B_uc009ztr.2_Intron|ANKS1B_uc001tgj.2_Intron|ANKS1B_uc009ztp.2_Missense_Mutation_p.R19Q|ANKS1B_uc010svf.1_Missense_Mutation_p.R19Q|ANKS1B_uc001tgg.3_Intron|ANKS1B_uc010svg.1_Intron|ANKS1B_uc009zts.1_Missense_Mutation_p.R239Q	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	1013						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CAGTTTTGATCGGGGAATATC	0.428000													106	123					0	0	0.000781405	0	0
ANKS1B	56899	broad.mit.edu	37	12	99640561	99640561	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:99640561G>A	uc001tge.1	-	13	2255	c.1838C>T	c.(1837-1839)TCT>TTT	p.S613F	ANKS1B_uc001tgf.1_Missense_Mutation_p.S193F|ANKS1B_uc001tgk.2_5'UTR|ANKS1B_uc009ztt.1_Missense_Mutation_p.S579F	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	613						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		ACAGGCTGGAGAGGATCCATG	0.468000													64	84					0	0	0.000781405	0	0
STAB2	55576	broad.mit.edu	37	12	104084292	104084292	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:104084292C>T	uc001tjw.2	+	30	3459	c.3273C>T	c.(3271-3273)TTC>TTT	p.F1091F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1091	Extracellular (Potential).|FAS1 3.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGGGCAACTTCCTTCACTTGG	0.393000													27	45					0	0	0.000227799	0	0
NUAK1	9891	broad.mit.edu	37	12	106460902	106460902	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:106460902C>G	uc001tlj.1	-	7	3044	c.1664G>C	c.(1663-1665)GGT>GCT	p.G555A		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	555							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						GGCAGGGACACCAGGCTCTGA	0.587000													23	28					0	0	0.000229342	0	0
CORO1C	23603	broad.mit.edu	37	12	109048113	109048114	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:109048113_109048114GG>TT	uc001tnj.2	-	7	919_920	c.823_824CC>AA	c.(823-825)CCT>AAT	p.P275N	CORO1C_uc009zva.2_Missense_Mutation_p.P328N|CORO1C_uc010sxf.1_Missense_Mutation_p.P238N	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	275	WD 4.				actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						GCTGGTGTCAGGGTCATAGAAA	0.371000													8	213					0	0	6.4e-05	0	0
CCDC63	160762	broad.mit.edu	37	12	111321968	111321968	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:111321968G>A	uc001trv.1	+	8	1183	c.988G>A	c.(988-990)GAG>AAG	p.E330K	CCDC63_uc010sye.1_Missense_Mutation_p.E290K|CCDC63_uc001trw.1_Missense_Mutation_p.E245K	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	330										skin(6)|ovary(1)|pancreas(1)	8						TCTGGCCAAGGAGGAGAAGAA	0.532000													30	50					0	0	0.000409698	0	0
C12orf51	283450	broad.mit.edu	37	12	112638535	112638535	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:112638535G>A	uc009zwc.2	-	48	7226	c.7208C>T	c.(7207-7209)CCT>CTT	p.P2403L		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CATGTCAATAGGATACCAGTA	0.483000													34	31					0	0	0.000814825	0	0
NOS1	4842	broad.mit.edu	37	12	117728218	117728218	+	Missense_Mutation	SNP	C	T	T	rs147820513		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:117728218C>T	uc001twm.1	-	4	1552	c.866G>A	c.(865-867)GGA>GAA	p.G289E		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	289					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding	p.G289E(1)		ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGACTGTTTTCCTGAGGTGGG	0.557000													18	19					0	0	0.000958276	0	0
UNC119B	84747	broad.mit.edu	37	12	121154737	121154738	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:121154737_121154738CG>AT	uc001tyz.2	+	4	982_983	c.535_536CG>AT	c.(535-537)CGG>ATG	p.R179M		NM_001080533	NP_001074002	A6NIH7	U119B_HUMAN	unc-119 homolog B	179										haematopoietic_and_lymphoid_tissue(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCACTATTTCCGGGAACACTTG	0.460000													7	436					0	0	6.4e-05	0	0
OASL	8638	broad.mit.edu	37	12	121471346	121471347	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:121471346_121471347GG>TT	uc001tzj.1	-	2	404_405	c.398_399CC>AA	c.(397-399)CCC>CAA	p.P133Q	OASL_uc001tzk.1_Missense_Mutation_p.P133Q	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	133					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGAGAGCATCGGGGACTCTCTG	0.589000													7	339					0	0	6.4e-05	0	0
KDM2B	84678	broad.mit.edu	37	12	121880284	121880284	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:121880284G>A	uc001uat.2	-	19	3064	c.2960C>T	c.(2959-2961)CCC>CTC	p.P987L	KDM2B_uc001uaq.2_Missense_Mutation_p.P427L|KDM2B_uc010szy.1_Missense_Mutation_p.P427L|KDM2B_uc001uar.2_Missense_Mutation_p.P578L|KDM2B_uc001uas.2_Missense_Mutation_p.P918L|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.P235L|KDM2B_uc010szx.1_Missense_Mutation_p.P235L|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	987					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GATGCCCGGGGGCCGCTTGGG	0.701000													12	14					0	0	0.00010058	0	0
CLIP1	6249	broad.mit.edu	37	12	122862061	122862061	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:122862061C>T	uc001ucg.1	-	2	638	c.532G>A	c.(532-534)GAA>AAA	p.E178K	CLIP1_uc001uch.1_Missense_Mutation_p.E178K|CLIP1_uc001uci.1_Missense_Mutation_p.E178K|CLIP1_uc010tae.1_Missense_Mutation_p.E178K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	178	Ser-rich.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		GCTGAAGGTTCCTTTGCTGCT	0.512000													93	90					0	0	0.000781405	0	0
SBNO1	55206	broad.mit.edu	37	12	123804514	123804514	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:123804514G>A	uc010tap.1	-	19	2732	c.2732C>T	c.(2731-2733)TCT>TTT	p.S911F	SBNO1_uc010tao.1_Missense_Mutation_p.S910F|SBNO1_uc010taq.1_Intron	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	911							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		ATCAAGTTCAGATCTTGACTC	0.398000													37	48					0	0	0.000814825	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124228431	124228431	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr12:124228431C>T	uc001ufr.2	+	10	1386	c.1138C>T	c.(1138-1140)CAG>TAG	p.Q380*		NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	380	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		CGAGGGATTTCAGAACATCGT	0.458000													48	65					0	0	0.000781405	0	0
LOC374491	374491	broad.mit.edu	37	13	25161438	25161438	+	RNA	SNP	T	A	A	rs3869320	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:25161438T>A	uc001upm.2	+	8		c.962T>A			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						CTCTTTATAATAAGATTCATT	0.378000													6	35					0	0	0.000157383	0	0
LOC374491	374491	broad.mit.edu	37	13	25161457	25161457	+	RNA	SNP	G	A	A	rs1851732	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:25161457G>A	uc001upm.2	+	8		c.981G>A			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TTATTTATTCGATTCGTGGTA	0.378000													5	32					0	0	8.12818e-05	0	0
FRY	10129	broad.mit.edu	37	13	32745229	32745229	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:32745229G>A	uc001utx.2	+	18	2469	c.1973G>A	c.(1972-1974)TGG>TAG	p.W658*	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	658					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TTCTCAGATTGGAGGGAAGAT	0.418000													37	65					0	0	0.000814825	0	0
NBEA	26960	broad.mit.edu	37	13	35751166	35751166	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:35751166C>T	uc001uvb.2	+	28	4794	c.4588C>T	c.(4588-4590)CCT>TCT	p.P1530S	NBEA_uc010abi.2_Missense_Mutation_p.P218S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1530						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TAACCTTTCTCCTATTAAGGA	0.348000													5	7					0	0	3.59834e-05	0	0
LRCH1	23143	broad.mit.edu	37	13	47315858	47315859	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:47315858_47315859GG>TT	uc001vbj.2	+	19	2298_2299	c.2062_2063GG>TT	c.(2062-2064)GGG>TTG	p.G688L	LRCH1_uc001vbk.2_Missense_Mutation_p.G723L|LRCH1_uc001vbl.3_Intron	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	688	CH.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		GCTGGCACTCGGGGAGAAAGCC	0.515000													10	331					0	0	6.4e-05	0	0
PCDH8	5100	broad.mit.edu	37	13	53420893	53420893	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:53420893G>A	uc001vhi.2	-	1	1882	c.1679C>T	c.(1678-1680)GCC>GTC	p.A560V	PCDH8_uc001vhj.2_Missense_Mutation_p.A560V	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	560	Extracellular (Potential).|Cadherin 5.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CGCGTAGATGGCTCCGGTAGC	0.687000													8	7					0	0	0.000442599	0	0
PCDH17	27253	broad.mit.edu	37	13	58207873	58207873	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr13:58207873G>A	uc001vhq.1	+	1	2085	c.1193G>A	c.(1192-1194)GGC>GAC	p.G398D	PCDH17_uc010aec.1_Missense_Mutation_p.G398D	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	398	Extracellular (Potential).|Gly-rich.|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GGAGGGAcgggcggcggcggg	0.532000													4	7					0	0	0.00024832	0	0
OR4K2	390431	broad.mit.edu	37	14	20344762	20344762	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:20344762C>T	uc001vwh.1	+	1	336	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAACTGAGATCATCTTACTCA	0.438000													47	198					0	0	0.000781405	0	0
OR6S1	341799	broad.mit.edu	37	14	21109418	21109418	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:21109418G>A	uc001vxv.1	-	1	433	c.433C>T	c.(433-435)CGT>TGT	p.R145C		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	145	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		AAGGCCACACGAAAGCACACA	0.592000													7	15					0	0	8.12818e-05	0	0
OR4E2	26686	broad.mit.edu	37	14	22133916	22133916	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:22133916C>T	uc010tmd.1	+	1	620	c.620C>T	c.(619-621)TCC>TTC	p.S207F		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GGAACCATCTCCCTCTCCTGT	0.493000													17	36					0	0	0.000566183	0	0
PRMT5	10419	broad.mit.edu	37	14	23393554	23393554	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:23393554G>A	uc001whm.1	-	11	1215	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	PRMT5_uc001whl.1_Missense_Mutation_p.S358F|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.S269F|PRMT5_uc010tng.1_Missense_Mutation_p.S314F|PRMT5_uc010tnh.1_Missense_Mutation_p.S331F|PRMT5_uc001whn.1_Missense_Mutation_p.S204F	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	375					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		TGCCCGCAGGGAAGCGTTCAC	0.547000													33	38					0	0	0.000692331	0	0
DCAF11	80344	broad.mit.edu	37	14	24592188	24592188	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:24592188C>T	uc001wlv.2	+	14	1688	c.1408C>T	c.(1408-1410)CTT>TTT	p.L470F	DCAF11_uc001wlw.2_Missense_Mutation_p.L470F|DCAF11_uc001wlz.2_Missense_Mutation_p.L370F|DCAF11_uc001wly.2_Missense_Mutation_p.L426F|DCAF11_uc001wme.2_Missense_Mutation_p.L430F|DCAF11_uc010tny.1_Missense_Mutation_p.L337F|DCAF11_uc001wmd.2_Missense_Mutation_p.L470F|DCAF11_uc001wmc.2_Missense_Mutation_p.L370F|DCAF11_uc001wmb.3_Missense_Mutation_p.L444F|DCAF11_uc001wma.3_Missense_Mutation_p.L470F	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	470	WD 6.					CUL4 RING ubiquitin ligase complex	protein binding				0						AGTGTACGACCTTCTAAGTGG	0.532000													24	38					0	0	0.000586117	0	0
KHNYN	23351	broad.mit.edu	37	14	24901147	24901147	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:24901147C>T	uc001wph.3	+	3	882	c.680C>T	c.(679-681)CCC>CTC	p.P227L	KHNYN_uc010tpc.1_Missense_Mutation_p.P268L|KHNYN_uc010alw.2_Missense_Mutation_p.P227L|CBLN3_uc001wpg.3_5'Flank	NM_015299	NP_056114	O15037	KHNYN_HUMAN	hypothetical protein LOC23351	227										ovary(2)|liver(1)	3						GTGAGAGCTCCCCCTAGTGAC	0.642000											OREG0022627	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	47	45					0	0	0.000781405	0	0
CTSG	1511	broad.mit.edu	37	14	25042852	25042852	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:25042852G>A	uc001wpq.2	-	5	796	c.759C>T	c.(757-759)ACC>ACT	p.T253T		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	253					immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		GTCACAGGGGGGTCTCCATCT	0.502000													82	109					0	0	0.000781405	0	0
CDKN3	1033	broad.mit.edu	37	14	54884627	54884627	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:54884627C>T	uc001xap.2	+	7	624	c.510C>T	c.(508-510)AGC>AGT	p.S170S	CDKN3_uc001xar.2_Silent_p.S130S|CDKN3_uc001xaq.2_Silent_p.S169S|CDKN3_uc001xas.1_Intron|CDKN3_uc010aoj.1_RNA	NM_005192	NP_005183	Q16667	CDKN3_HUMAN	cyclin-dependent kinase inhibitor 3 isoform 1	170					cell cycle arrest|G1/S transition of mitotic cell cycle|negative regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity	perinuclear region of cytoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0						CCATAGACAGCCTGCGAGACC	0.453000													8	4					0	0	0.000157383	0	0
KCNH5	27133	broad.mit.edu	37	14	63447592	63447592	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:63447592C>T	uc001xfx.2	-	6	991	c.940G>A	c.(940-942)GAG>AAG	p.E314K	KCNH5_uc001xfy.2_Missense_Mutation_p.E314K|KCNH5_uc001xfz.1_Missense_Mutation_p.E256K|KCNH5_uc001xga.2_Missense_Mutation_p.E256K	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	314	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AAACTTACCTCATCCACATTT	0.363000													14	25					0	0	0.000422831	0	0
PPP2R5E	5529	broad.mit.edu	37	14	63851163	63851163	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:63851163G>A	uc001xgd.1	-	12	1791	c.1201C>T	c.(1201-1203)CCG>TCG	p.P401S	PPP2R5E_uc010tsf.1_Missense_Mutation_p.P325S|PPP2R5E_uc010tsg.1_Missense_Mutation_p.P325S|PPP2R5E_uc001xge.2_Missense_Mutation_p.P401S|PPP2R5E_uc010tsh.1_Missense_Mutation_p.P401S|PPP2R5E_uc001xgf.1_RNA	NM_006246	NP_006237	Q16537	2A5E_HUMAN	epsilon isoform of regulatory subunit B56,	401					signal transduction	cytoplasm|intracellular membrane-bounded organelle|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00197)|all cancers(60;0.0153)|BRCA - Breast invasive adenocarcinoma(234;0.128)		AAAACCTACGGATTCCAATGT	0.303000													53	58					0	0	0.000781405	0	0
ESR2	2100	broad.mit.edu	37	14	64723949	64723949	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:64723949C>T	uc001xha.1	-	6	1554	c.1086G>A	c.(1084-1086)CTG>CTA	p.L362L	ESR2_uc001xgu.2_Silent_p.L362L|ESR2_uc001xgv.2_Silent_p.L362L|ESR2_uc001xgw.2_Intron|ESR2_uc001xgx.2_Silent_p.L362L|ESR2_uc001xgy.1_Silent_p.L362L|ESR2_uc001xgz.1_Silent_p.L362L|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Intron|ESR2_uc010aqd.1_RNA	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	362	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	CTCACCTGTCCAGAACAAGAT	0.468000													41	48					0	0	0.000589545	0	0
SMOC1	64093	broad.mit.edu	37	14	70418873	70418873	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:70418873G>A	uc001xls.1	+	2	371	c.118G>A	c.(118-120)GAC>AAC	p.D40N	SMOC1_uc001xlt.1_Missense_Mutation_p.D40N	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	40	Kazal-like.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		AAGTGACCGTGACCCACAGTG	0.488000													33	48					0	0	0.000953801	0	0
FAM161B	145483	broad.mit.edu	37	14	74411480	74411480	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:74411480G>A	uc001xpd.1	-	3	589	c.483C>T	c.(481-483)AGC>AGT	p.S161S		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						AGGAGCTGACGCTTCTGTGCT	0.652000													15	15					0	0	0.000308642	0	0
C14orf179	112752	broad.mit.edu	37	14	76525678	76525678	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:76525678T>C	uc010asm.1	+	5	291	c.257T>C	c.(256-258)CTC>CCC	p.L86P	C14orf179_uc001xsf.2_RNA|C14orf179_uc010asl.1_Missense_Mutation_p.L86P|C14orf179_uc001xsg.2_Intron|C14orf179_uc010tve.1_RNA	NM_001102564	NP_001096034	Q96FT9	IFT43_HUMAN	hypothetical protein LOC112752 isoform 2	86					cilium morphogenesis|intraflagellar retrograde transport						0				BRCA - Breast invasive adenocarcinoma(234;0.0199)		AGTTTCCGCCTCAGACCACAG	0.458000													26	32					0	0	0.000227799	0	0
CCDC88C	440193	broad.mit.edu	37	14	91770235	91770235	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:91770235C>T	uc010aty.2	-	20	3544	c.3445G>A	c.(3445-3447)GAG>AAG	p.E1149K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1149	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTTTCGTTCTCCGTCTCCTTG	0.647000													27	31					0	0	0.000227799	0	0
SERPINA5	5104	broad.mit.edu	37	14	95054239	95054239	+	Silent	SNP	G	A	A	rs146244413		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:95054239G>A	uc001ydm.2	+	3	750	c.540G>A	c.(538-540)ACG>ACA	p.T180T	SERPINA5_uc010ave.2_Silent_p.T180T|SERPINA5_uc001ydn.1_Silent_p.T180T	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	180					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CAAAGCAAACGAAGGGCAAGA	0.483000													48	62					0	0	0.000781405	0	0
SERPINA13	388007	broad.mit.edu	37	14	95107896	95107896	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:95107896C>T	uc001ydt.2	+	2	501	c.413C>T	c.(412-414)TCC>TTC	p.S138F		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						GTGAGCATCTCCCTGGCCTTG	0.587000													6	4					0	0	3.59834e-05	0	0
DICER1	23405	broad.mit.edu	37	14	95582790	95582790	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:95582790C>T	uc001ydw.2	-	11	1934	c.1752G>A	c.(1750-1752)AAG>AAA	p.K584K	DICER1_uc001ydv.2_Silent_p.K574K|DICER1_uc001ydx.2_Silent_p.K584K	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	584	Helicase C-terminal.|Required for interaction with PRKRA and TARBP2.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TTGATCTTACCTTTTCAATAG	0.328000			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				49	64					0	0	0.000781405	0	0
EML1	2009	broad.mit.edu	37	14	100406371	100406371	+	Silent	SNP	C	T	T	rs113496186		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:100406371C>T	uc001ygs.2	+	22	2439	c.2370C>T	c.(2368-2370)GTC>GTT	p.V790V	EML1_uc010tww.1_Silent_p.V778V|EML1_uc001ygr.2_Silent_p.V809V	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	790	WD 11.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				TCACCAATGTCGATTTCCTCT	0.557000													28	27					0	0	0.000878237	0	0
ADAM6	8755	broad.mit.edu	37	14	106174198	106174198	+	RNA	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:106174198G>A	uc010tyt.1	-	3632		c.59922C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron					Parts of antibodies, mostly variable regions.												0						TCTTCCCATGGTTCCATGGCT	0.627000													7	10					0	0	0.000157383	0	0
ADAM6	8755	broad.mit.edu	37	14	106610746	106610746	+	RNA	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:106610746G>A	uc010tyt.1	-	1166		c.26188C>T								Parts of antibodies, mostly variable regions.												0						TAGCAGCAAGGAAAATCCAGC	0.463000													32	43					0	0	0.000191422	0	0
ADAM6	8755	broad.mit.edu	37	14	106668007	106668007	+	RNA	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr14:106668007G>A	uc010tyt.1	-	876		c.21962C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.483000													45	66					0	0	0.000781405	0	0
ATP10A	57194	broad.mit.edu	37	15	25924935	25924935	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:25924935G>A	uc010ayu.2	-	21	4159	c.4053C>T	c.(4051-4053)TCC>TCT	p.S1351S		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1351	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		AAGAAGGCTGGGACAGGGGCA	0.637000													22	44					0	0	0.000375601	0	0
RYR3	6263	broad.mit.edu	37	15	34023823	34023823	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:34023823G>A	uc001zhi.2	+	48	7422	c.7352G>A	c.(7351-7353)AGG>AAG	p.R2451K	RYR3_uc010bar.2_Missense_Mutation_p.R2451K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2451	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ACAATATACAGGCTATCCAAG	0.468000													11	14					0	0	6.40141e-05	0	0
DISP2	85455	broad.mit.edu	37	15	40659729	40659729	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:40659729G>A	uc001zlk.1	+	8	1505	c.1416G>A	c.(1414-1416)ATG>ATA	p.M472I		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	472	SSD.				smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		TCACTGGCATGGACCTGGGCC	0.622000													48	52					0	0	0.000781405	0	0
INO80	54617	broad.mit.edu	37	15	41365680	41365680	+	Silent	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:41365680A>G	uc001zni.2	-	11	1554	c.1341T>C	c.(1339-1341)TTT>TTC	p.F447F	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	447	Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						CCTGGGCTTTAAAATGGTTAC	0.368000													31	42					0	0	0.000491102	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42292362	42292362	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:42292362G>A	uc001zow.1	-	7	705	c.705C>T	c.(703-705)TAC>TAT	p.Y235Y	PLA2G4E_uc010udc.1_5'Flank|PLA2G4E_uc001zov.1_5'Flank	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	257					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		AGTACTTGGGGTAGTGGAAGC	0.612000													4	6					0	0	0.000602214	0	0
WDR76	79968	broad.mit.edu	37	15	44120337	44120337	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:44120337G>A	uc001zti.1	+	2	258	c.235G>A	c.(235-237)GTG>ATG	p.V79M		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	79											0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		TAACAATGAAGTGGCGTGTAA	0.398000													37	57					0	0	0.00058488	0	0
C15orf44	81556	broad.mit.edu	37	15	65890678	65890678	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:65890678G>A	uc002apd.2	-	6	1065	c.729C>T	c.(727-729)ATC>ATT	p.I243I	C15orf44_uc010uix.1_Silent_p.I279I|C15orf44_uc010uiz.1_Silent_p.I207I|C15orf44_uc010uja.1_Silent_p.I194I|C15orf44_uc010ujb.1_Silent_p.I164I|C15orf44_uc002ape.3_Silent_p.I243I|C15orf44_uc010uiy.1_Silent_p.I164I	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	243										ovary(1)	1						TGACTTTAGGGATAGGATCAA	0.383000													24	33					0	0	0.000720815	0	0
LCTL	197021	broad.mit.edu	37	15	66845554	66845554	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:66845554G>C	uc002aqc.2	-	9	1097	c.965C>G	c.(964-966)CCG>CGG	p.P322R	LCTL_uc002aqd.3_Missense_Mutation_p.P149R|LCTL_uc010bhw.2_Missense_Mutation_p.P20R	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	322	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						TGAGAACACCGGTAACCTCGA	0.438000													4	190					0	0	0.000602214	0	0
SMAD6	4091	broad.mit.edu	37	15	67073543	67073543	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:67073543C>T	uc002aqf.2	+	4	2084	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Silent_p.I126I	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	387	MH2.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						GCAGCAAGATCGGCTTCGGCA	0.672000													12	16					0	0	0.000151284	0	0
CYP11A1	1583	broad.mit.edu	37	15	74636268	74636268	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:74636268G>A	uc002axt.2	-	4	846	c.691C>T	c.(691-693)CAG>TAG	p.Q231*	CYP11A1_uc002axs.2_Nonsense_Mutation_p.Q73*|CYP11A1_uc010bjm.1_Nonsense_Mutation_p.Q73*|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Nonsense_Mutation_p.Q231*|CYP11A1_uc010bjp.1_RNA|CYP11A1_uc010ulj.1_Nonsense_Mutation_p.Q11*	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	231					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	ATGAATCGCTGGGCCTCGGGG	0.562000													44	57					0	0	0.000781405	0	0
EDC3	80153	broad.mit.edu	37	15	74967365	74967365	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:74967365G>A	uc002ayn.2	-	5	589	c.101C>T	c.(100-102)ACC>ATC	p.T34I	EDC3_uc002ayo.2_Missense_Mutation_p.T34I|EDC3_uc002aym.2_Missense_Mutation_p.T34I	NM_001142443	NP_001135915	Q96F86	EDC3_HUMAN	enhancer of mRNA decapping 3	34	Required for P-body targeting and interaction with DCP1A (By similarity).				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1						GAGAGAAATGGTCTGGCTGAC	0.493000													84	119					0	0	0.000781405	0	0
CYP1A1	1543	broad.mit.edu	37	15	75012979	75012980	+	Missense_Mutation	DNP	GG	AT	AT	rs41279188	byFrequency	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:75012979_75012980GG>AT	uc002ayp.3	-	7	1511_1512	c.1389_1390CC>AT	c.(1387-1392)GCCCGC>GCATGC	p.R464C	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.R200C|CYP1A1_uc010bjx.2_Missense_Mutation_p.R200C|CYP1A1_uc002ayq.3_Missense_Mutation_p.R464C|CYP1A1_uc010bjy.2_Missense_Mutation_p.R435C	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	464			R -> C (in allele CYP1A1*9).		cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	ACCTCCCAGCGGGCAATGGTCT	0.540000									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				45	33					0	0	6.4e-05	0	0
FBXO22	26263	broad.mit.edu	37	15	76225175	76225175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:76225175C>T	uc002bbk.2	+	7	1049	c.944C>T	c.(943-945)CCA>CTA	p.P315L	FBXO22_uc002bbl.2_Missense_Mutation_p.P211L|FBXO22OS_uc002bbm.1_RNA	NM_147188	NP_671717	Q8NEZ5	FBX22_HUMAN	F-box only protein 22 isoform a	315					ubiquitin-dependent protein catabolic process		ubiquitin-protein ligase activity				0						GCCAACATTCCAGAGCATAAC	0.517000													22	28					0	0	0.000175454	0	0
HOMER2	9455	broad.mit.edu	37	15	83544130	83544130	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:83544130C>T	uc002bjg.2	-	3	375	c.189G>A	c.(187-189)CCG>CCA	p.P63P	HOMER2_uc002bjh.2_Silent_p.P63P|HOMER2_uc002bjj.2_Silent_p.P63P|HOMER2_uc002bji.2_Silent_p.P63P	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	63	WH1.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						AGGTCATATTCGGTGTGATTG	0.438000													16	28					0	0	0.000422831	0	0
AGBL1	123624	broad.mit.edu	37	15	86807930	86807930	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:86807930G>A	uc002blz.1	+	10	1470	c.1390G>A	c.(1390-1392)GAT>AAT	p.D464N	AGBL1_uc002bma.1_Missense_Mutation_p.D195N|AGBL1_uc002bmb.1_Missense_Mutation_p.D158N	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	464					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CCCTTTCCACGATCCCTATCT	0.473000													56	73					0	0	0.000781405	0	0
RGMA	56963	broad.mit.edu	37	15	93595718	93595718	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:93595718G>A	uc002bss.1	-	3	422	c.150C>T	c.(148-150)ATC>ATT	p.I50I	RGMA_uc002bsq.1_Silent_p.I34I|RGMA_uc010boi.1_5'UTR|RGMA_uc002bsr.1_5'UTR|RGMA_uc010urc.1_Silent_p.I58I	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	50					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			TGCACTTGAGGATCTTGCACG	0.647000													10	12					0	0	0.00010058	0	0
C15orf51	196968	broad.mit.edu	37	15	100331823	100331823	+	RNA	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr15:100331823G>A	uc010urx.1	-	5		c.2369C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						CAACCCAGAGGACCTGGAGAG	0.607000													15	28					0	0	0.000422831	0	0
CLCN7	1186	broad.mit.edu	37	16	1499018	1499018	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:1499018G>A	uc002clv.2	-	19	1856	c.1746C>T	c.(1744-1746)CCC>CCT	p.P582P	CLCN7_uc010brq.1_5'Flank|CLCN7_uc002clu.2_Silent_p.P30P|CLCN7_uc002clw.2_Silent_p.P558P	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	582	Helical; (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				CCAGCATGATGGGGAAGCCGT	0.612000													13	18					0	0	0.000219431	0	0
MEFV	4210	broad.mit.edu	37	16	3293453	3293453	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:3293453C>T	uc002cun.1	-	10	2074	c.2034G>A	c.(2032-2034)GGG>GGA	p.G678G		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	678	B30.2/SPRY.		G -> E (in arFMF).		inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GAGTCATGTTCCCTTTCCTGC	0.547000													35	58					0	0	0.000191422	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857353	9857353	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:9857353C>T	uc002czo.3	-	13	4596	c.4048G>A	c.(4048-4050)GAC>AAC	p.D1350N	GRIN2A_uc010uym.1_Missense_Mutation_p.D1350N|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1350	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCTTGCTGTCCTCCAGACCT	0.537000													19	32					0	0	0.000958276	0	0
CIITA	4261	broad.mit.edu	37	16	10971230	10971230	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:10971230G>A	uc002dai.3	+	1	176	c.43G>A	c.(43-45)GAG>AAG	p.E15K	CIITA_uc002daj.3_Missense_Mutation_p.E15K|CIITA_uc002dak.3_Missense_Mutation_p.E15K|CIITA_uc002dag.2_Missense_Mutation_p.E15K|CIITA_uc002dah.2_Missense_Mutation_p.E15K|CIITA_uc010bup.1_Missense_Mutation_p.E15K	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	15					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CTACCTGTCAGAGCCCCAAGG	0.572000			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								6	13					0	0	8.12818e-05	0	0
ARL6IP1	23204	broad.mit.edu	37	16	18806848	18806848	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:18806848G>A	uc002dfl.1	-	4	415	c.346C>T	c.(346-348)CGA>TGA	p.R116*	ARL6IP1_uc010van.1_Nonsense_Mutation_p.R87*|ARL6IP1_uc010bvz.1_Intron	NM_015161	NP_055976	Q15041	AR6P1_HUMAN	ADP-ribosylation factor-like 6 interacting	116						integral to membrane	protein binding				0						GCTCTGCGTCGAGTTTTTACT	0.363000													30	44					0	0	0.000279167	0	0
COQ7	10229	broad.mit.edu	37	16	19083402	19083402	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:19083402C>T	uc002dfr.2	+	2	286	c.226C>T	c.(226-228)CGG>TGG	p.R76W	COQ7_uc002dfs.2_Missense_Mutation_p.R62W	NM_016138	NP_057222	Q99807	COQ7_HUMAN	COQ7 protein	76	1.|2 X approximate tandem repeats.				ubiquinone biosynthetic process	mitochondrial inner membrane|nucleus	oxidoreductase activity|transition metal ion binding			skin(1)	1						TGTCCTGGGTCGGACCAGCGT	0.537000											OREG0023656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	41					0	0	0.000814825	0	0
ITPRIPL2	162073	broad.mit.edu	37	16	19126877	19126877	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:19126877G>T	uc002dfu.3	+	1	1624	c.1094G>T	c.(1093-1095)CGG>CTG	p.R365L	ITPRIPL2_uc002dft.2_Missense_Mutation_p.R61L	NM_001034841	NP_001030013	Q3MIP1	IPIL2_HUMAN	inositol 1,4,5-triphosphate receptor interacting	365	Cytoplasmic (Potential).					integral to membrane				skin(2)	2						CTGCAGGAACGGGCAGCTCCA	0.672000													5	76					0.000602214	0.0065184	0.000602214	1	0
GP2	2813	broad.mit.edu	37	16	20335499	20335499	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:20335499G>A	uc002dgv.2	-	3	257	c.174C>T	c.(172-174)GTC>GTT	p.V58V	GP2_uc002dgw.2_Silent_p.V58V|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	58						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						GGTCAAAACAGACATGAGCCT	0.552000													28	28					0	0	0.000227799	0	0
DNAH3	55567	broad.mit.edu	37	16	20996810	20996810	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:20996810C>T	uc010vbe.1	-	48	7254	c.7254G>A	c.(7252-7254)AGG>AGA	p.R2418R	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2418	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CACGGCAGATCCTAGAGATGT	0.552000													31	36					0	0	0.000279167	0	0
PRKCB	5579	broad.mit.edu	37	16	24135269	24135269	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:24135269C>T	uc002dmd.2	+	9	1229	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	PRKCB_uc002dme.2_Silent_p.F344F	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	344	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	ATTTTAACTTCCTAATGGTGC	0.443000													94	101					0	0	0.000781405	0	0
MVP	9961	broad.mit.edu	37	16	29842365	29842365	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:29842365C>T	uc002dui.2	+	3	376	c.292C>T	c.(292-294)CCC>TCC	p.P98S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_Intron|MVP_uc002duj.2_Missense_Mutation_p.P98S|MVP_uc010vea.1_5'UTR	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	98	MVP 2.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GGACCCCTTCCCCCTGTACCC	0.617000													8	8					0	0	0.000274275	0	0
ABCC11	85320	broad.mit.edu	37	16	48234320	48234320	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:48234320G>A	uc002eff.1	-	14	2299	c.1949C>T	c.(1948-1950)TCC>TTC	p.S650F	ABCC11_uc002efg.1_Missense_Mutation_p.S650F|ABCC11_uc002efh.1_Missense_Mutation_p.S650F|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	650	ABC transporter 1.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CTGACGGTCGGAATAGACGGC	0.592000									Cerumen_Type				13	22					0	0	0.000219431	0	0
NOD2	64127	broad.mit.edu	37	16	50763758	50763758	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:50763758G>A	uc002egm.1	+	11	3101	c.2996G>A	c.(2995-2997)GGG>GAG	p.G999E	NOD2_uc010vgq.1_Missense_Mutation_p.G44E	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	999	LRR 8.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ACCTACCTAGGGGCAGAAGCC	0.383000													16	22					0	0	0.000566183	0	0
RBL2	5934	broad.mit.edu	37	16	53487496	53487496	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:53487496C>G	uc002ehi.3	+	6	1017	c.899C>G	c.(898-900)CCC>CGC	p.P300R	RBL2_uc010vgv.1_Missense_Mutation_p.P226R|RBL2_uc002ehj.2_5'UTR|RBL2_uc010vgw.1_Missense_Mutation_p.P84R	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	300					cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTCTGGAAACCCTATATTAGG	0.358000													173	170					0	0	0.000781405	0	0
CDH8	1006	broad.mit.edu	37	16	61687766	61687766	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:61687766G>A	uc002eog.1	-	12	2398	c.2146C>T	c.(2146-2148)CCA>TCA	p.P716S		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	716	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		ACACCATTTGGAACTGGAGCA	0.413000													24	42					0	0	0.000375601	0	0
FUK	197258	broad.mit.edu	37	16	70503181	70503181	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:70503181C>G	uc002eyy.2	+	10	968	c.910C>G	c.(910-912)CGG>GGG	p.R304G	FUK_uc010cft.2_Missense_Mutation_p.R336G|FUK_uc002eyz.2_Intron	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	304						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				GCAGAGCGCCCGGGCCCAGCT	0.652000													4	95					0	0	0.00024832	0	0
HYDIN	54768	broad.mit.edu	37	16	70871611	70871612	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:70871611_70871612CC>TT	uc002ezr.2	-	77	13348_13349	c.13220_13221GG>AA	c.(13219-13221)GGG>GAA	p.G4407E	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4408										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGGTACCCTTCCCTTTGATTTC	0.460000													16	26					0	0	6.4e-05	0	0
CALB2	794	broad.mit.edu	37	16	71411602	71411602	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:71411602C>T	uc002faa.3	+	4	364	c.294C>T	c.(292-294)TTC>TTT	p.F98F	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_Silent_p.F98F	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	98	EF-hand 2.						calcium ion binding				0		Ovarian(137;0.125)				AAGAGAACTTCCTTCTGTGCT	0.557000													29	41					0	0	0.000184323	0	0
KCNG4	93107	broad.mit.edu	37	16	84270359	84270359	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:84270359C>T	uc010voc.1	-	2	854	c.733G>A	c.(733-735)GAC>AAC	p.D245N	KCNG4_uc002fhu.1_Missense_Mutation_p.D245N	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	245						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GCCCTGAGGTCGGGCATGGTG	0.517000													14	12					0	0	0.000422831	0	0
OR1A2	26189	broad.mit.edu	37	17	3101329	3101329	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:3101329G>A	uc002fvd.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGCAACCAGGAAGTAGCCAA	0.478000													40	4					0	0	0.000589545	0	0
SPNS3	201305	broad.mit.edu	37	17	4389851	4389851	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:4389851G>A	uc002fxt.2	+	11	1467	c.1423G>A	c.(1423-1425)GAG>AAG	p.E475K	SPNS3_uc002fxu.2_Missense_Mutation_p.E348K|SPNS3_uc002fxv.2_Missense_Mutation_p.E126K|uc002fxw.1_5'Flank	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	475					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						GGAGAGAGACGAGACCCGGGC	0.677000													20	9					0	0	0.000586117	0	0
EFNB3	1949	broad.mit.edu	37	17	7612849	7612849	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:7612849G>A	uc002gis.2	+	5	1375	c.978G>A	c.(976-978)CAG>CAA	p.Q326Q		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	326	Cytoplasmic (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				ATATCGTGCAGGATGGGCCCC	0.592000													31	2					0	0	0.000814825	0	0
DNAH2	146754	broad.mit.edu	37	17	7697672	7697672	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:7697672C>T	uc002giu.1	+	48	7684	c.7670C>T	c.(7669-7671)CCC>CTC	p.P2557L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2557	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ATGACCTTCCCCACAGTGAGG	0.612000													15	5					0	0	0.000219431	0	0
USP43	124739	broad.mit.edu	37	17	9632019	9632019	+	Silent	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:9632019C>G	uc010cod.2	+	15	3084	c.3084C>G	c.(3082-3084)GGC>GGG	p.G1028G	USP43_uc002gma.3_Silent_p.G717G|USP43_uc010vva.1_Silent_p.G1023G|USP43_uc010coe.2_Silent_p.G825G|USP43_uc002gmc.3_Silent_p.G540G	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	1028					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TGGTGAGTGGCGGGCTGAGCC	0.672000													9	0					0	0	0.000442599	0	0
MYH1	4619	broad.mit.edu	37	17	10399767	10399767	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:10399767C>T	uc002gmo.2	-	34	4850	c.4756G>A	c.(4756-4758)GAA>AAA	p.E1586K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1586	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGTCAATTTCCTCATCTTTT	0.453000													61	13					0	0	0.000781405	0	0
MYH1	4619	broad.mit.edu	37	17	10415777	10415777	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:10415777C>T	uc002gmo.2	-	12	1189	c.1095G>A	c.(1093-1095)ATG>ATA	p.M365I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	365	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCTTGAATTTCATGTTCCCAT	0.433000													34	4					0	0	0.000409698	0	0
SPAG5	10615	broad.mit.edu	37	17	26919504	26919504	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:26919504G>A	uc002hbq.2	-	3	850	c.758C>T	c.(757-759)GCC>GTC	p.A253V	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	253					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					TGCTGCCAAGGCAGTTGAAGG	0.498000													23	42					0	0	0.000295444	0	0
CORO6	84940	broad.mit.edu	37	17	27944553	27944553	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:27944553G>C	uc002hel.2	-	5	720	c.718C>G	c.(718-720)CGC>GGC	p.R240G	CORO6_uc002hem.2_Intron|CORO6_uc002hen.2_5'UTR	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	240	WD 4.				actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						TGGCTCATGCGGGTGAAGCCC	0.692000													3	32					0	0	0.00024832	0	0
DDX52	11056	broad.mit.edu	37	17	35992205	35992205	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:35992205G>A	uc002hoi.1	-	4	579	c.541C>T	c.(541-543)CTA>TTA	p.L181L	DDX52_uc002hoh.1_Silent_p.L73L|DDX52_uc002hoj.1_Silent_p.L89L	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	181	Q motif.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				CCTGCATCTAGAATGTTCTGA	0.403000													88	51					0	0	0.000781405	0	0
TNS4	84951	broad.mit.edu	37	17	38645016	38645016	+	Silent	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:38645016C>A	uc010cxb.2	-	3	809	c.645G>T	c.(643-645)CTG>CTT	p.L215L		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	215	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CTGAGGGGGGCAGAGGGCGCT	0.647000													27	56					3.01185e-09	3.29873e-08	0.000586117	1	0
KRT23	25984	broad.mit.edu	37	17	39092540	39092540	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:39092540T>G	uc002hvm.1	-	2	905	c.316A>C	c.(316-318)AAA>CAA	p.K106Q	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Missense_Mutation_p.K106Q|KRT23_uc002hvn.1_Missense_Mutation_p.K106Q	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	106	Rod.|Coil 1A.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				TGGTGCCATTTCAGGATGCGG	0.547000													88	57					0	0	0.000781405	0	0
KRT14	3861	broad.mit.edu	37	17	39743019	39743019	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:39743019C>T	uc002hxf.1	-	1	129	c.68G>A	c.(67-69)GGC>GAC	p.G23D	JUP_uc010wfs.1_Intron|KRT14_uc010cxp.1_Missense_Mutation_p.G23D	NM_000526	NP_000517	P02533	K1C14_HUMAN	keratin 14	23	Head.				epidermis development|hemidesmosome assembly|intermediate filament bundle assembly	cytosol|keratin filament|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.000307)				gcccccgatgccgcccccgat	0.587000													7	3					0	0	8.12818e-05	0	0
EPN3	55040	broad.mit.edu	37	17	48614080	48614080	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:48614080G>A	uc002ira.3	+	2	598	c.163G>A	c.(163-165)GAA>AAA	p.E55K	EPN3_uc010wms.1_Missense_Mutation_p.E110K|EPN3_uc010wmt.1_RNA|EPN3_uc010wmu.1_Missense_Mutation_p.E55K	NM_017957	NP_060427	Q9H201	EPN3_HUMAN	epsin 3	55	ENTH.					clathrin-coated vesicle|nucleus|perinuclear region of cytoplasm	lipid binding			ovary(1)	1	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;2.88e-09)			GGCCTTCACCGAAGTCATGGG	0.597000													63	33					0	0	0.000781405	0	0
C17orf47	284083	broad.mit.edu	37	17	56619994	56619994	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:56619994G>A	uc002iwq.1	-	1	1690	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	518										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TACCCAGGAAGAAAGCAGTAA	0.527000													66	135					0	0	0.000781405	0	0
ACE	1636	broad.mit.edu	37	17	61561305	61561305	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:61561305G>A	uc002jau.1	+	11	1704	c.1682G>A	c.(1681-1683)CGG>CAG	p.R561Q	ACE_uc010ddu.1_Missense_Mutation_p.R378Q|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	561	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GACATCTACCGGTCCACCAAG	0.607000													8	9					0	0	0.000274275	0	0
KIF19	124602	broad.mit.edu	37	17	72340934	72340934	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:72340934G>A	uc002jkm.3	+	7	755	c.617G>A	c.(616-618)AGG>AAG	p.R206K	KIF19_uc002jkj.2_Missense_Mutation_p.R206K|KIF19_uc002jkk.2_Missense_Mutation_p.R164K|KIF19_uc002jkl.2_Missense_Mutation_p.R164K	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	206	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AACCGGCAGAGGACCCAGGAG	0.667000													30	67					0	0	0.00058488	0	0
GPR142	350383	broad.mit.edu	37	17	72367905	72367905	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:72367905C>T	uc010wqy.1	+	4	555	c.555C>T	c.(553-555)GCC>GCT	p.A185A	GPR142_uc010wqx.1_Silent_p.A97A	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	185	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CGCGCCTTGCCACCAGGACCA	0.627000													19	38					0	0	0.000132079	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74622760	74622761	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:74622760_74622761CC>AA	uc002jsh.2	-	5	1457_1458	c.1283_1284GG>TT	c.(1282-1284)CGG>CTT	p.R428L	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.R296L|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	428	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TCTTGAAACCCCGATTGCCCAA	0.554000													12	519					0	0	6.4e-05	0	0
TMC6	11322	broad.mit.edu	37	17	76120117	76120117	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:76120117G>A	uc002juj.1	-	8	1161	c.1035C>T	c.(1033-1035)TCC>TCT	p.S345S	TMC6_uc002jui.1_5'Flank|TMC6_uc010dhf.1_Silent_p.S178S|TMC6_uc002juk.2_Silent_p.S345S|TMC6_uc010dhg.1_Silent_p.S345S|TMC6_uc002jul.1_Silent_p.S345S|TMC6_uc002jum.3_Silent_p.S136S|TMC6_uc002jun.3_Silent_p.S345S|TMC6_uc002juo.2_Silent_p.S118S	NM_007267	NP_009198	Q7Z403	TMC6_HUMAN	transmembrane channel-like 6	345	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CGCCCACAGTGGAGAGGTAGG	0.572000									Epidermodysplasia_Verruciformis_Familial_Clustering_of				18	53					0	0	0.000958276	0	0
CANT1	124583	broad.mit.edu	37	17	76993169	76993169	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:76993169G>A	uc002jwn.2	-	4	975	c.536C>T	c.(535-537)TCC>TTC	p.S179F	CANT1_uc002jwk.2_Missense_Mutation_p.S179F|CANT1_uc002jwj.2_Missense_Mutation_p.S179F|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	179	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			GTCATCCACGGAGTAGAGTTT	0.587000			T	ETV4	prostate								99	71					0	0	0.000781405	0	0
CBX8	57332	broad.mit.edu	37	17	77769030	77769030	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:77769030G>A	uc002jxd.1	-	5	667	c.574C>T	c.(574-576)CCG>TCG	p.P192S		NM_020649	NP_065700	Q9HC52	CBX8_HUMAN	chromobox homolog 8	192					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex	methylated histone residue binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CTGTCCCCCGGTGAGCTGGGC	0.483000													11	30					0	0	0.00010058	0	0
AZI1	22994	broad.mit.edu	37	17	79180951	79180951	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:79180951C>G	uc002jzp.1	-	4	561	c.361G>C	c.(361-363)GAG>CAG	p.E121Q	AZI1_uc002jzn.1_Missense_Mutation_p.E121Q|AZI1_uc002jzo.1_Missense_Mutation_p.E121Q|AZI1_uc010wum.1_Missense_Mutation_p.E121Q	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	121					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			GCTCCCTTCTCGCTGGGGGCT	0.607000													3	71					0	0	0.00024832	0	0
PSMG2	56984	broad.mit.edu	37	18	12706651	12706651	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:12706651C>T	uc002krk.2	+	2	203	c.160C>T	c.(160-162)CCA>TCA	p.P54S	PSMG2_uc002krg.2_Missense_Mutation_p.P23S|PSMG2_uc002krj.1_Missense_Mutation_p.P54S	NM_020232	NP_064617	Q969U7	PSMG2_HUMAN	proteasome (prosome, macropain) assembly	54					proteasome assembly	nucleus	protein binding				0						TTGTCTTGTGCCAATGGTTGG	0.378000													31	87					0	0	0.000227799	0	0
LAMA3	3909	broad.mit.edu	37	18	21481141	21481141	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:21481141G>A	uc002kuq.2	+	48	6141	c.6055G>A	c.(6055-6057)GGG>AGG	p.G2019R	LAMA3_uc002kur.2_Missense_Mutation_p.G1963R|LAMA3_uc002kus.3_Missense_Mutation_p.G410R|LAMA3_uc002kut.3_Missense_Mutation_p.G354R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2019	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAGAACAATGGGCTTGCTAA	0.498000													17	54					0	0	0.000175454	0	0
DSG4	147409	broad.mit.edu	37	18	28986203	28986203	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:28986203C>T	uc002kwq.2	+	12	1935	c.1800C>T	c.(1798-1800)GCC>GCT	p.A600A	DSG4_uc002kwr.2_Silent_p.A600A	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	600	Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACTCTGGTGCCGCGGGCATCT	0.502000													32	62					0	0	0.000409698	0	0
NOL4	8715	broad.mit.edu	37	18	31803074	31803074	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:31803074C>T	uc010dmi.2	-	1	373	c.144G>A	c.(142-144)ACG>ACA	p.T48T	NOL4_uc002kxr.3_5'Flank|NOL4_uc010xbt.1_5'Flank|NOL4_uc010dmh.2_5'Flank|NOL4_uc010xbu.1_Silent_p.T48T|NOL4_uc002kxt.3_Silent_p.T48T	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	48						nucleolus	RNA binding			ovary(3)	3						TGGCGTTGTCCGTGGAGCTCG	0.597000													60	36					0	0	0.000781405	0	0
SLC14A2	8170	broad.mit.edu	37	18	43224013	43224013	+	Silent	SNP	G	A	A	rs149835341		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:43224013G>A	uc010dnj.2	+	11	1560	c.1239G>A	c.(1237-1239)ACG>ACA	p.T413T	SLC14A2_uc002lbb.2_Silent_p.T413T|SLC14A2_uc002lbe.2_Silent_p.T413T	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	413						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TGCTCCTGACGACAAACAACC	0.542000													54	109					0	0	0.000781405	0	0
KIAA1632	57724	broad.mit.edu	37	18	43534931	43534931	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:43534931G>A	uc002lbm.2	-	2	537	c.437C>T	c.(436-438)TCG>TTG	p.S146L	KIAA1632_uc002lbo.1_Missense_Mutation_p.S146L	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	146					autophagy						0						ACCTTGTACCGACATATTTTC	0.428000													29	61					0	0	0.000279167	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559699	44559699	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:44559699G>A	uc002lcr.1	-	1	2290	c.1937C>T	c.(1936-1938)TCT>TTT	p.S646F	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	646	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTTGGCCACAGATTTGAAACA	0.542000													68	167					0	0	0.000781405	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45555814	45555814	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:45555814G>A	uc002lda.2	-	2	1693	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F	ZBTB7C_uc002ldb.2_Silent_p.F559F|ZBTB7C_uc010dnu.2_Silent_p.F568F|ZBTB7C_uc010dnv.2_Silent_p.F581F|ZBTB7C_uc010dnw.2_Silent_p.F559F	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	559						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCGCGCGCCCGAACAGCTTCA	0.726000													16	18					0	0	0.000422831	0	0
MAPK4	5596	broad.mit.edu	37	18	48252484	48252484	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:48252484G>A	uc002lev.2	+	5	2006	c.1006G>A	c.(1006-1008)GAC>AAC	p.D336N	MAPK4_uc010xdm.1_Missense_Mutation_p.D125N|MAPK4_uc010doz.2_Intron	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	336					cell cycle		ATP binding|MAP kinase activity	p.D336N(1)		lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		TGAGATCGACGACATCGTGCT	0.602000													19	30					0	0	0.000132079	0	0
CDH7	1005	broad.mit.edu	37	18	63511244	63511245	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:63511244_63511245GG>AA	uc002ljz.2	+	7	1503_1504	c.1178_1179GG>AA	c.(1177-1179)GGG>GAA	p.G393E	CDH7_uc002lka.2_Missense_Mutation_p.G393E|CDH7_uc002lkb.2_Missense_Mutation_p.G393E	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	393	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				ACCCAGGTTGGGAATATCATTG	0.450000													20	43					0	0	6.4e-05	0	0
NETO1	81832	broad.mit.edu	37	18	70526078	70526078	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr18:70526078C>T	uc002lkw.2	-	4	736	c.452G>A	c.(451-453)CGA>CAA	p.R151Q	NETO1_uc002lkx.1_Missense_Mutation_p.R150Q|NETO1_uc002lky.1_Missense_Mutation_p.R151Q|NETO1_uc002lkz.2_Missense_Mutation_p.R150Q	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	151	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GAAATTGTATCGAGCTGAAAA	0.323000													55	26					0	0	0.000781405	0	0
ABCA7	10347	broad.mit.edu	37	19	1051465	1051465	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:1051465C>T	uc002lqw.3	+	21	3073	c.2842C>T	c.(2842-2844)CTG>TTG	p.L948L	ABCA7_uc010dsb.1_Silent_p.L810L	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	948	ABC transporter 1.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAACGGAAGCTGTCCGTGGC	0.617000													18	26					0	0	0.00074312	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600597	3600597	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:3600597G>A	uc002lyg.1	-	2	250	c.36C>T	c.(34-36)TTC>TTT	p.F12F	TBXA2R_uc002lye.1_Silent_p.F12F	NM_001060	NP_001051	P21731	TA2R_HUMAN	thromboxane A2 receptor isoform alpha	12	Extracellular (Potential).				platelet activation	integral to plasma membrane	guanyl-nucleotide exchange factor activity|protein binding|thromboxane A2 receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)	Ridogrel(DB01207)	TTGTGGGCCGGAAACAGGGCC	0.672000													10	17					0	0	6.40141e-05	0	0
C19orf45	374877	broad.mit.edu	37	19	7569281	7569281	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:7569281G>A	uc002mgm.2	+	4	907	c.766G>A	c.(766-768)GAT>AAT	p.D256N	C19orf45_uc010xjo.1_5'Flank	NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	256											0						CAGGCCCCAGGATCTGCCTGA	0.388000													22	30					0	0	0.000375601	0	0
MUC16	94025	broad.mit.edu	37	19	9054252	9054252	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:9054252G>A	uc002mkp.2	-	4	31574	c.31370C>T	c.(31369-31371)TCG>TTG	p.S10457L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10459	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTGGCAGGCGAAGTGGATGT	0.448000													7	5					0	0	0.000157383	0	0
MUC16	94025	broad.mit.edu	37	19	9065925	9065925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:9065925G>A	uc002mkp.2	-	3	21725	c.21521C>T	c.(21520-21522)GCT>GTT	p.A7174V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7176	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGATGCACAGCTTCTGTATT	0.498000													28	31					0	0	0.000720815	0	0
MUC16	94025	broad.mit.edu	37	19	9075775	9075775	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:9075775C>T	uc002mkp.2	-	3	11875	c.11671G>A	c.(11671-11673)GAA>AAA	p.E3891K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3892	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGTATCTTCTGAGACAGAA	0.453000													16	15					0	0	0.000566183	0	0
MUC16	94025	broad.mit.edu	37	19	9090826	9090826	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:9090826G>A	uc002mkp.2	-	1	1193	c.989C>T	c.(988-990)TCC>TTC	p.S330F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	330	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGTGTCATGGAAAAAGGGAT	0.527000													30	47					0	0	0.000147802	0	0
ZNF560	147741	broad.mit.edu	37	19	9577475	9577475	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:9577475G>A	uc002mlp.1	-	10	2358	c.2148C>T	c.(2146-2148)GAC>GAT	p.D716D	ZNF560_uc010dwr.1_Silent_p.D610D	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	716	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CTTTCCCACAGTCCTTACATT	0.403000													25	40					0	0	0.000720815	0	0
COL5A3	50509	broad.mit.edu	37	19	10107314	10107314	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:10107314G>A	uc002mmq.1	-	12	1401	c.1315C>T	c.(1315-1317)CCG>TCG	p.P439S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	439	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ACAGTGCCCGGTGGGCCTCGG	0.502000													16	27					0	0	0.000566183	0	0
PDE4A	5141	broad.mit.edu	37	19	10568589	10568589	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:10568589G>A	uc002moj.2	+	8	1020	c.912G>A	c.(910-912)ACG>ACA	p.T304T	PDE4A_uc002mok.2_Silent_p.T278T|PDE4A_uc002mol.2_Silent_p.T243T|PDE4A_uc002mom.2_Silent_p.T65T|PDE4A_uc002mon.2_Intron|PDE4A_uc002moo.2_5'Flank	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	304					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	CATCACCCACGATGAAGGAAC	0.562000													21	28					0	0	0.00047179	0	0
OR7C2	26658	broad.mit.edu	37	19	15052739	15052739	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:15052739G>C	uc010xoc.1	+	1	439	c.439G>C	c.(439-441)GGG>CGG	p.G147R		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					GCTGGTTCTGGGGTCCTGGTG	0.532000													4	161					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	19	15881883	15881883	+	RNA	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:15881883G>A	uc002nbo.2	-	6		c.1015C>T			uc010xor.1_Missense_Mutation_p.T165I					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		AGTGGGAAGGGTATGGCGCCG	0.537000													26	35					0	0	0.000720815	0	0
CYP4F2	8529	broad.mit.edu	37	19	15990223	15990223	+	Missense_Mutation	SNP	G	A	A	rs142113670		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:15990223G>A	uc002nbs.1	-	12	1380	c.1330C>T	c.(1330-1332)CGC>TGC	p.R444C	CYP4F2_uc010xot.1_Missense_Mutation_p.R295C	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	444					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GGGTCAAAGCGAAAGGGGTCG	0.577000													51	62					0	0	0.000781405	0	0
CALR3	125972	broad.mit.edu	37	19	16590041	16590041	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:16590041C>T	uc002ned.2	-	9	1119	c.1056G>A	c.(1054-1056)ATG>ATA	p.M352I	MED26_uc002nee.2_RNA	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	352	Glu/Lys-rich.|C-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						GGGCCTTCTTCATTTCCTCCT	0.398000													45	60					0	0	0.000781405	0	0
F2RL3	9002	broad.mit.edu	37	19	17000638	17000638	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:17000638G>A	uc002nfa.2	+	2	539	c.364G>A	c.(364-366)GAC>AAC	p.D122N		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	122	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						CGCGGCTGCTGACCTCCTGCT	0.751000													13	2					0	0	0.000219431	0	0
FAM125A	93343	broad.mit.edu	37	19	17531349	17531349	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:17531349C>T	uc002ngo.1	+	3	225	c.192C>T	c.(190-192)AAC>AAT	p.N64N	FAM125A_uc002ngn.1_Silent_p.N64N|FAM125A_uc002ngp.1_5'UTR|FAM125A_uc002ngq.1_5'Flank	NM_138401	NP_612410	Q96EY5	F125A_HUMAN	family with sequence similarity 125, member A	64	MABP.				protein transport	late endosome membrane|microtubule organizing center|nucleus	SH3 domain binding				0						ACCCCCAGAACCCGCAGGAGA	0.667000													15	15					0	0	0.000422831	0	0
ZNF90	7643	broad.mit.edu	37	19	20215170	20215170	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:20215170C>T	uc002nor.2	+	2	265	c.126C>T	c.(124-126)TTC>TTT	p.F42F	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	42	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACCTGGTCTTCCTTGGTGAGG	0.368000													23	35					0	0	0.000375601	0	0
MAP4K1	11184	broad.mit.edu	37	19	39100288	39100288	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:39100288G>A	uc002oix.1	-	13	1062	c.954C>T	c.(952-954)ATC>ATT	p.I318I	MAP4K1_uc002oiw.1_5'Flank|MAP4K1_uc002oiy.1_Silent_p.I318I|MAP4K1_uc010xug.1_5'UTR	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	318					activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GGGTGGATCTGATCCGCCGAG	0.607000													7	21					0	0	0.000274275	0	0
SHKBP1	92799	broad.mit.edu	37	19	41083314	41083314	+	Silent	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:41083314A>G	uc002oob.2	+	3	202	c.153A>G	c.(151-153)GGA>GGG	p.G51G	SHKBP1_uc002ooc.2_Silent_p.G51G|SHKBP1_uc002ood.2_Silent_p.G51G|SHKBP1_uc010xvl.1_5'UTR|SHKBP1_uc002ooe.2_5'UTR|SHKBP1_uc002oof.2_5'Flank|SHKBP1_uc010xvm.1_5'Flank|SHKBP1_uc010xvn.1_5'Flank	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	51	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TTCTGAGCGGACGCATCTCGA	0.627000													9	12					0	0	0.000673444	0	0
CYP2B6	1555	broad.mit.edu	37	19	41518266	41518266	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:41518266G>A	uc002opr.1	+	7	1035	c.1028G>A	c.(1027-1029)CGA>CAA	p.R343Q	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.R143Q	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	343					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	CTTCATGACCGAGCCAAAATG	0.483000													22	28					0	0	0.000375601	0	0
PSG8	440533	broad.mit.edu	37	19	43268142	43268142	+	Missense_Mutation	SNP	G	A	A	rs77145360		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:43268142G>A	uc002ouo.2	-	2	454	c.356C>T	c.(355-357)TCC>TTC	p.S119F	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_Intron|PSG8_uc002ouh.2_Missense_Mutation_p.S119F|PSG8_uc010ein.2_Intron|PSG8_uc002ouj.3_5'UTR|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Missense_Mutation_p.S119F|PSG8_uc002oum.3_Missense_Mutation_p.S119F|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.S119F	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	119	Ig-like V-type.					extracellular region					0		Prostate(69;0.00899)				TAAGGTGTAGGATCCTGCGTC	0.443000													128	158					0	0	0.000781405	0	0
HIF3A	64344	broad.mit.edu	37	19	46825115	46825115	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:46825115C>T	uc002peh.2	+	10	1256	c.1227C>T	c.(1225-1227)TTC>TTT	p.F409F	HIF3A_uc002peg.3_Silent_p.F409F|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Silent_p.F353F|HIF3A_uc002pej.1_Silent_p.F340F|HIF3A_uc002pek.2_Silent_p.F353F|HIF3A_uc010xxy.1_Silent_p.F340F|HIF3A_uc002pel.2_Silent_p.F407F|HIF3A_uc010xxz.1_Silent_p.F358F	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCCGCCGTTTCTGCAGCCCTG	0.687000													29	42					0	0	0.000339439	0	0
HIF3A	64344	broad.mit.edu	37	19	46832463	46832463	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:46832463G>A	uc002peh.2	+	12	1470	c.1441_splice	c.e12-1	p.D481_splice	HIF3A_uc002peg.3_Splice_Site_p.D481_splice|HIF3A_uc002pei.3_Splice_Site_p.D425_splice|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Splice_Site_p.D425_splice|HIF3A_uc010xxy.1_Splice_Site_p.D412_splice|HIF3A_uc002pel.2_Splice_Site_p.D479_splice|HIF3A_uc010xxz.1_Splice_Site_p.D430_splice	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GCCCTCCGCAGGATGCTGATG	0.353000													31	42					0	0	0.000953801	0	0
MYH14	79784	broad.mit.edu	37	19	50781504	50781504	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:50781504G>A	uc002prr.1	+	28	3914	c.3867G>A	c.(3865-3867)GAG>GAA	p.E1289E	MYH14_uc010enu.1_Silent_p.E1330E|MYH14_uc002prq.1_Silent_p.E1297E|MYH14_uc010ycb.1_5'Flank	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1289	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GTGATGGGGAGAGGGCACGAG	0.657000													4	5					0	0	0.00024832	0	0
KLK3	354	broad.mit.edu	37	19	51361716	51361716	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:51361716C>T	uc002pts.1	+	4	536	c.495C>T	c.(493-495)TTC>TTT	p.F165F	KLK3_uc010ycj.1_Silent_p.F124F|KLK3_uc002ptr.1_Silent_p.F122F|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	165	Peptidase S1.			FLTP -> HLLYDQM (in Ref. 13; AA sequence).	negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		GGCCCGTAGTCTTGACCCCAA	0.403000													63	60					0	0	0.000781405	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034594	52034594	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:52034594C>T	uc002pwy.2	-	2	409	c.247G>A	c.(247-249)GAA>AAA	p.E83K	SIGLEC6_uc002pwz.2_Missense_Mutation_p.E83K|SIGLEC6_uc002pxa.2_Missense_Mutation_p.E83K|SIGLEC6_uc010ydb.1_Missense_Mutation_p.E36K|SIGLEC6_uc010ydc.1_Missense_Mutation_p.E72K|SIGLEC6_uc010eoz.1_Missense_Mutation_p.E72K|SIGLEC6_uc010epb.1_Missense_Mutation_p.E36K|SIGLEC6_uc010epa.1_Missense_Mutation_p.E72K	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	83	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TGCACTTCTTCGTCTGGGTCG	0.582000													23	37					0	0	0.000229342	0	0
HAS1	3036	broad.mit.edu	37	19	52217350	52217350	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:52217350G>A	uc002pxo.1	-	5	1102	c.1067C>T	c.(1066-1068)ACC>ATC	p.T356I	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_3'UTR|HAS1_uc002pxn.1_Missense_Mutation_p.T363I|HAS1_uc002pxp.1_Missense_Mutation_p.T355I	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	356	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GGACCTGGAGGTGTACCTGCA	0.637000													8	7					0	0	0.000673444	0	0
ZNF28	7576	broad.mit.edu	37	19	53304430	53304430	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:53304430G>A	uc002qad.2	-	4	788	c.668C>T	c.(667-669)TCC>TTC	p.S223F	ZNF28_uc002qac.2_Missense_Mutation_p.S170F|ZNF28_uc010eqe.2_Missense_Mutation_p.S169F	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	223	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		ACAATTAAAGGATTTGCCACT	0.323000													46	54					0	0	0.000509022	0	0
CNOT3	4849	broad.mit.edu	37	19	54647468	54647468	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:54647468C>T	uc002qdj.1	+	5	552	c.241C>T	c.(241-243)CGC>TGC	p.R81C	CNOT3_uc010yel.1_Missense_Mutation_p.R81C|CNOT3_uc002qdi.2_5'UTR|CNOT3_uc002qdk.1_Missense_Mutation_p.R81C|CNOT3_uc010ere.1_RNA	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	81					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TATAGACAACCGCAAGCTCAT	0.557000													22	21					0	0	0.000175454	0	0
LENG8	114823	broad.mit.edu	37	19	54966176	54966176	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:54966176C>T	uc002qfv.1	+	6	759	c.615C>T	c.(613-615)CCC>CCT	p.P205P	LENG8_uc002qfw.2_Silent_p.P242P			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	205							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		AGAAGCGACCCTTTGCTGTTA	0.597000													11	20					0	0	6.40141e-05	0	0
LILRP2	79166	broad.mit.edu	37	19	55224589	55224589	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:55224589C>T	uc002qgs.1	+	1		c.4989C>T			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CTTGGTCCACCATCCCCAGCC	0.612000													4	9					0	0	0.00024832	0	0
NLRP2	55655	broad.mit.edu	37	19	55492998	55492998	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:55492998G>A	uc002qij.2	+	5	497	c.411G>A	c.(409-411)ACG>ACA	p.T137T	NLRP2_uc010yfp.1_Silent_p.T114T|NLRP2_uc010esn.2_Silent_p.T113T|NLRP2_uc010eso.2_Silent_p.T134T|NLRP2_uc010esp.2_Intron	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	137					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TTACAGAAACGAAAGGAAATG	0.323000													37	44					0	0	0.000319135	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028416	59028416	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:59028416C>G	uc002qtd.2	-	2	917	c.625G>C	c.(625-627)GAG>CAG	p.E209Q	ZBTB45_uc002qte.2_Missense_Mutation_p.E209Q|ZBTB45_uc002qtf.2_Missense_Mutation_p.E209Q	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	209					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		TCGTCATCCTCGTCACCTCGG	0.672000											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	95	133					0	0	0.000781405	0	0
MYT1L	23040	broad.mit.edu	37	2	1893184	1893184	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:1893184C>T	uc002qxe.2	-	16	3176	c.2349G>A	c.(2347-2349)CGG>CGA	p.R783R	MYT1L_uc002qxd.2_Silent_p.R781R|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	783					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		AGCAGCTGTCCCGCGGCCTCT	0.612000													27	36					0	0	0.000279167	0	0
CMPK2	129607	broad.mit.edu	37	2	6991691	6991691	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:6991691G>A	uc002qyo.2	-	4	1225	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	CMPK2_uc002qyn.1_RNA|CMPK2_uc010yis.1_Intron|CMPK2_uc010ewv.2_Silent_p.I372I	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	372					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGAGCAGCAGGATAAGGTCAG	0.597000													39	63					0	0	0.000319135	0	0
CAPN13	92291	broad.mit.edu	37	2	30976031	30976031	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:30976031G>A	uc002rnn.2	-	10	1151	c.975C>T	c.(973-975)ATC>ATT	p.I325I	CAPN13_uc002rnp.1_Silent_p.I325I	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	325	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TAAACATGGCGATGAATTTCT	0.438000													26	65					0	0	0.000720815	0	0
LTBP1	4052	broad.mit.edu	37	2	33174001	33174001	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:33174001G>A	uc002ros.2	+	2	554	c.554G>A	c.(553-555)AGG>AAG	p.R185K		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	185					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGCTCCCAGAGGTGCACCAAA	0.567000													45	50					0	0	0.000781405	0	0
VRK2	7444	broad.mit.edu	37	2	58358966	58358966	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:58358966G>A	uc002rzo.2	+	12	1445	c.700G>A	c.(700-702)GAG>AAG	p.E234K	VRK2_uc010fcb.2_Missense_Mutation_p.E234K|VRK2_uc002rzs.2_Missense_Mutation_p.E234K|VRK2_uc002rzr.2_Missense_Mutation_p.E234K|VRK2_uc010fcc.2_Missense_Mutation_p.E116K|VRK2_uc002rzv.2_Missense_Mutation_p.E234K|VRK2_uc010fcd.2_Missense_Mutation_p.E211K|VRK2_uc002rzp.2_Missense_Mutation_p.E234K|VRK2_uc010ypg.1_Missense_Mutation_p.E234K|VRK2_uc002rzq.2_Missense_Mutation_p.E234K|VRK2_uc002rzu.2_Missense_Mutation_p.E234K|VRK2_uc002rzt.2_Missense_Mutation_p.E116K|VRK2_uc010yph.1_Missense_Mutation_p.E116K	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	234	Protein kinase.					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						AAGTGACGTTGAGATCCTCGG	0.468000													23	40					0	0	0.00047179	0	0
ADD2	119	broad.mit.edu	37	2	70890787	70890787	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:70890787C>T	uc002sgz.2	-	16	2416	c.1951G>A	c.(1951-1953)GGG>AGG	p.G651R	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_3'UTR|ADD2_uc002sha.2_Missense_Mutation_p.G345R|ADD2_uc002sgx.2_3'UTR	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	651					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TCCTCCCTCCCGTTGACCACC	0.522000													30	50					0	0	0.000339439	0	0
FBXO41	150726	broad.mit.edu	37	2	73493768	73493768	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:73493768C>T	uc002sjb.1	-	3	1131	c.1131G>A	c.(1129-1131)GCG>GCA	p.A377A		NM_001080410	NP_001073879	Q8TF61	FBX41_HUMAN	F-box protein 41	316	Potential.					intracellular	protein binding|zinc ion binding			breast(2)|pancreas(1)	3						TGGCCTCCCGCGCCGCCGTCT	0.667000													26	45					0	0	0.00058488	0	0
Unknown	0	broad.mit.edu	37	2	89326736	89326736	+	RNA	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:89326736G>A	uc010ytr.1	-	68		c.6442C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CTGATGGTGAGAGTGAAGTCT	0.542000													25	30					0	0	0.000878237	0	0
VWA3B	200403	broad.mit.edu	37	2	98779420	98779420	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:98779420C>T	uc002syo.2	+	8	1359	c.1095C>T	c.(1093-1095)GAC>GAT	p.D365D	VWA3B_uc010yvh.1_Silent_p.D215D|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Translation_Start_Site|VWA3B_uc002sym.2_Silent_p.D365D|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.D22D	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	365										ovary(3)|large_intestine(2)|skin(1)	6						CCAAGCCCGACGTGGCCACTG	0.567000													37	54					0	0	0.000781405	0	0
VWA3B	200403	broad.mit.edu	37	2	98928668	98928668	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:98928668C>T	uc002syo.2	+	28	4005	c.3741C>T	c.(3739-3741)GCC>GCT	p.A1247A	VWA3B_uc002syr.1_Missense_Mutation_p.P620L|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1247										ovary(3)|large_intestine(2)|skin(1)	6						CCCAGACAGCCCACCTCCACT	0.582000													21	19					0	0	0.00047179	0	0
AFF3	3899	broad.mit.edu	37	2	100199260	100199260	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:100199260C>T	uc002tag.2	-	16	3029	c.2793G>A	c.(2791-2793)ACG>ACA	p.T931T	AFF3_uc002taf.2_Silent_p.T956T|AFF3_uc010fiq.1_Silent_p.T931T|AFF3_uc010yvr.1_Silent_p.T1084T|AFF3_uc002tah.1_Silent_p.T956T	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	931					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						ATCAACAAACCGTGAGGTCTC	0.498000													29	41					0	0	0.000279167	0	0
PLGLA	285189	broad.mit.edu	37	2	107007371	107007371	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:107007371C>T	uc002tdp.2	+	3		c.220C>T				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						GTGTATCTTTCAGAGTGCAAG	0.453000													10	10					0	0	0.00010058	0	0
RGPD3	653489	broad.mit.edu	37	2	107041150	107041150	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:107041150C>A	uc010ywi.1	-	20	3330	c.3273G>T	c.(3271-3273)GAG>GAT	p.E1091D		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1091	RanBD1 1.				intracellular transport		binding			ovary(1)	1						TGCCATTGACCTCGTTTTTGA	0.398000													134	156					3.20115e-93	3.56424e-92	0.000781405	1	0
INHBB	3625	broad.mit.edu	37	2	121106908	121106908	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:121106908A>T	uc002tmn.2	+	2	728	c.682A>T	c.(682-684)ACC>TCC	p.T228S		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	228					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				CGGCTGGCATACCTTCCCACT	0.632000													57	80					0	0	0.000781405	0	0
CLASP1	23332	broad.mit.edu	37	2	122165191	122165191	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:122165191G>A	uc002tnc.2	-	25	2915	c.2525C>T	c.(2524-2526)TCC>TTC	p.S842F	CLASP1_uc010yyv.1_5'UTR|CLASP1_uc002tmz.2_5'UTR|CLASP1_uc002tna.2_5'UTR|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.S822F|CLASP1_uc010yza.1_Missense_Mutation_p.S814F|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Missense_Mutation_p.S813F	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	842					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					ACCATTCCTGGAGCCATATGA	0.493000													51	49					0	0	0.000781405	0	0
MYO7B	4648	broad.mit.edu	37	2	128345966	128345966	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:128345966G>A	uc002top.2	+	15	1744	c.1691_splice	c.e15-1	p.G564_splice		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB							apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TGTCTCCACAGGCTTCCTGGA	0.542000													9	20					0	0	0.000673444	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541240	133541240	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:133541240G>A	uc002ttp.2	-	14	3518	c.3144C>T	c.(3142-3144)ACC>ACT	p.T1048T	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1048							protein binding				0						GGCGAGGAGAGGTTTTGGGGA	0.557000													31	42					0	0	0.000227799	0	0
R3HDM1	23518	broad.mit.edu	37	2	136479545	136479545	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:136479545C>T	uc002tuo.2	+	24	3198	c.2828C>T	c.(2827-2829)GCT>GTT	p.A943V	R3HDM1_uc010fni.2_Missense_Mutation_p.A942V|R3HDM1_uc002tup.2_Missense_Mutation_p.A888V|R3HDM1_uc010zbh.1_Missense_Mutation_p.A691V	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	943							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AATCCTCCTGCTGTTCTGCAC	0.413000													28	41					0	0	0.000491102	0	0
LRP1B	53353	broad.mit.edu	37	2	141777598	141777598	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:141777598C>T	uc002tvj.1	-	12	2835	c.1863G>A	c.(1861-1863)AGG>AGA	p.R621R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	621	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAATGGTTTTCCTATGGCCAT	0.418000										TSP Lung(27;0.18)			17	20					0	0	0.000958276	0	0
CYTIP	9595	broad.mit.edu	37	2	158290911	158290911	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:158290911C>T	uc002tzj.1	-	3	322	c.250G>A	c.(250-252)GAT>AAT	p.D84N	CYTIP_uc010zcl.1_5'UTR	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	84	PDZ.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						GTTTCATTATCCTGCTTCTCC	0.333000													48	36					0	0	0.000781405	0	0
BAZ2B	29994	broad.mit.edu	37	2	160242964	160242964	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:160242964C>T	uc002uao.2	-	22	3723	c.3371G>A	c.(3370-3372)GGA>GAA	p.G1124E	BAZ2B_uc002uap.2_Missense_Mutation_p.G1088E	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1124	DDT.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						ATTTAGCAATCCCTCTTGAAG	0.433000													10	12					0	0	6.40141e-05	0	0
ITGB6	3694	broad.mit.edu	37	2	161052834	161052834	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:161052834G>A	uc002ubh.2	-	3	255	c.239C>T	c.(238-240)TCC>TTC	p.S80F	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.S80F|ITGB6_uc010zcq.1_Missense_Mutation_p.S38F|ITGB6_uc010fov.1_Missense_Mutation_p.S80F	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	80	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TTCTACTTGGGAGACAGGGTT	0.393000													78	90					0	0	0.000781405	0	0
FAP	2191	broad.mit.edu	37	2	163039979	163039979	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:163039979C>T	uc002ucd.2	-	21	2023	c.1815_splice	c.e21-1	p.R605_splice	FAP_uc010fpc.2_Splice_Site_p.R154_splice|FAP_uc010zct.1_Splice_Site_p.R580_splice|FAP_uc010fpd.2_Splice_Site_p.R84_splice	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit						endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						TATGAATTTTCTAAAGTAAAA	0.284000													17	19					0	0	0.00074312	0	0
SCN9A	6335	broad.mit.edu	37	2	167133802	167133802	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:167133802C>T	uc010fpl.2	-	16	2873	c.2532G>A	c.(2530-2532)CTG>CTA	p.L844L	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	855	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TGATCTTAATCAGCATGTTCA	0.398000													9	22					0	0	0.000274275	0	0
MYO3B	140469	broad.mit.edu	37	2	171260857	171260857	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:171260857C>T	uc002ufy.2	+	20	2521	c.2378C>T	c.(2377-2379)GCA>GTA	p.A793V	MYO3B_uc002ufv.2_Missense_Mutation_p.A780V|MYO3B_uc010fqb.1_Missense_Mutation_p.A780V|MYO3B_uc002ufz.2_Missense_Mutation_p.A793V|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	793	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GGACTGCTTGCACTTTTGGAT	0.473000													18	31					0	0	0.00074312	0	0
HOXD10	3236	broad.mit.edu	37	2	176983919	176983919	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:176983919A>G	uc002ukj.2	+	2	1053	c.983A>G	c.(982-984)AAC>AGC	p.N328S		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	328						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		AGCCGAGAGAACCGGATCCGA	0.443000													16	36					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179582773	179582773	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:179582773G>A	uc010zfg.1	-	83	21452	c.21228C>T	c.(21226-21228)TCC>TCT	p.S7076S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S3737S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8003							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGATTACTAAGGAAGCAACGT	0.408000													11	28					0	0	6.40141e-05	0	0
CCDC141	285025	broad.mit.edu	37	2	179742823	179742823	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:179742823G>A	uc002unf.1	-	2	99	c.42C>T	c.(40-42)ATC>ATT	p.I14I	CCDC141_uc002ung.2_Silent_p.I589I	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	14							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CCTTCTGAGGGATTTCGGTTT	0.348000													15	22					0	0	0.000422831	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187694550	187694550	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:187694550C>T	uc002upu.1	-	8	1039	c.999G>A	c.(997-999)AAG>AAA	p.K333K		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	333					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GCTTACTATTCTTAGTAATCA	0.388000													9	11					0	0	0.000442599	0	0
SDPR	8436	broad.mit.edu	37	2	192701226	192701226	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:192701226G>A	uc002utb.2	-	2	1031	c.701C>T	c.(700-702)TCC>TTC	p.S234F		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	234	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CTTCAGGCTGGATCTTTTTAT	0.473000													77	83					0	0	0.000781405	0	0
ICA1L	130026	broad.mit.edu	37	2	203684471	203684472	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:203684471_203684472GG>TT	uc002uzh.1	-	6	674_675	c.510_511CC>AA	c.(508-513)TCCCAA>TCAAAA	p.Q171K	ICA1L_uc002uzi.1_Missense_Mutation_p.Q171K|ICA1L_uc002uzj.2_Missense_Mutation_p.Q171K	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	171	AH.										0						TCCAGCTCTTGGGATACATCTT	0.416000													14	524					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	203964360	203964361	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:203964360_203964361GG>TT	uc002uzt.3	+	11	1440_1441	c.1107_1108GG>TT	c.(1105-1110)CAGGGA>CATTGA	p.369_370QG>H*		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	369_370							binding			ovary(1)|skin(1)	2						AGGTGTTTCAGGGACAATTGGA	0.391000													10	398					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	203972603	203972604	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:203972603_203972604GG>TT	uc002uzt.3	+	13	1887_1888	c.1554_1555GG>TT	c.(1552-1557)TTGGGG>TTTTGG	p.518_519LG>FW		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	518_519							binding			ovary(1)|skin(1)	2						ATGGTTCCTTGGGGAGTCAGTC	0.460000													12	420					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204000871	204000872	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:204000871_204000872CC>AA	uc002uzt.3	+	27	4531_4532	c.4198_4199CC>AA	c.(4198-4200)CCA>AAA	p.P1400K	NBEAL1_uc002uzs.3_Missense_Mutation_p.P110K	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1400							binding			ovary(1)|skin(1)	2						CACACCATCCCCAGTAGAGTCT	0.426000													16	330					0	0	6.4e-05	0	0
MAP2	4133	broad.mit.edu	37	2	210559009	210559009	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:210559009G>A	uc002vde.1	+	7	2363	c.2115G>A	c.(2113-2115)CCG>CCA	p.P705P	MAP2_uc002vdc.1_Silent_p.P705P|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.P701P	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	705			P -> L (in a colorectal cancer sample; somatic mutation).		central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity	p.P705L(1)		ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TCAATTTGCCGATGTCTTGCC	0.433000													43	47					0	0	0.000781405	0	0
ABCA12	26154	broad.mit.edu	37	2	215919365	215919365	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:215919365T>C	uc002vew.2	-	4	561	c.341A>G	c.(340-342)AAC>AGC	p.N114S	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	114					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTATCCAGGTTGGATGACTT	0.388000													21	9					0	0	0.000295444	0	0
DNPEP	23549	broad.mit.edu	37	2	220250763	220250763	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:220250763G>A	uc010zlg.1	-	6	623	c.541C>T	c.(541-543)CGC>TGC	p.R181C	DNPEP_uc010zlf.1_5'Flank|DNPEP_uc002vle.2_Missense_Mutation_p.R173C|DNPEP_uc002vlf.1_Missense_Mutation_p.R159C|DNPEP_uc002vlh.2_Missense_Mutation_p.R120C|DNPEP_uc002vli.1_Missense_Mutation_p.R120C|DNPEP_uc002vlj.2_Missense_Mutation_p.R163C|uc002vlk.1_5'Flank	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	163					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	TGTGGGATGCGAAGAATGGGC	0.632000													20	45					0	0	0.000295444	0	0
SLC4A3	6508	broad.mit.edu	37	2	220502344	220502344	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:220502344G>A	uc002vmp.3	+	17	2846	c.2577G>A	c.(2575-2577)GAG>GAA	p.E859E	SLC4A3_uc002vmo.3_Silent_p.E886E|SLC4A3_uc010fwm.2_Silent_p.E409E|SLC4A3_uc010fwn.1_Silent_p.E368E	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	859	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACCCCCCTGAGGGGGCCCTGG	0.642000													9	20					0	0	0.000151284	0	0
SERPINE2	5270	broad.mit.edu	37	2	224856569	224856569	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:224856569C>T	uc002vnu.2	-	4	879	c.636G>A	c.(634-636)GGG>GGA	p.G212G	SERPINE2_uc002vnt.2_Silent_p.G212G|SERPINE2_uc010zlr.1_Silent_p.G224G|SERPINE2_uc002vnv.2_Silent_p.G212G	NM_006216	NP_006207	P07093	GDN_HUMAN	plasminogen activator inhibitor type 1, member 2	212					negative regulation of blood coagulation|negative regulation of plasminogen activation|negative regulation of platelet aggregation|positive regulation of astrocyte differentiation|regulation of cell migration	cytosol|extracellular matrix|extracellular space|extrinsic to external side of plasma membrane|neuromuscular junction|platelet alpha granule	heparin binding|receptor binding|serine-type endopeptidase inhibitor activity			breast(2)|ovary(1)|central_nervous_system(1)	4		Renal(207;0.025)|all_lung(227;0.0586)|Lung NSC(271;0.0682)|all_hematologic(139;0.0797)		Epithelial(121;5.68e-10)|all cancers(144;1.9e-07)|Lung(261;0.0088)|LUSC - Lung squamous cell carcinoma(224;0.00902)		GATAGGATTTCCCGTCGGCTG	0.547000													13	29					0	0	0.000219431	0	0
PID1	55022	broad.mit.edu	37	2	229890519	229890519	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:229890519C>T	uc002vpr.3	-	3	620	c.582G>A	c.(580-582)CAG>CAA	p.Q194Q	PID1_uc002vps.3_Silent_p.Q192Q|PID1_uc002vpt.3_Silent_p.Q161Q|PID1_uc002vpu.3_Silent_p.Q112Q	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	194	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GGCAGTCCATCTGGTAGGACA	0.587000													32	43					0	0	0.000409698	0	0
D2HGDH	728294	broad.mit.edu	37	2	242681921	242681921	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr2:242681921C>T	uc002wce.1	+	4	595	c.422C>T	c.(421-423)CCC>CTC	p.P141L	D2HGDH_uc010zpc.1_RNA|D2HGDH_uc010fzq.1_Missense_Mutation_p.P7L|D2HGDH_uc002wcg.1_RNA	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	141	FAD-binding PCMH-type.				2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		GGCAGCGTCCCCGTCTTTGAC	0.652000													13	16					0	0	0.00010058	0	0
PTPRA	5786	broad.mit.edu	37	20	2988017	2988018	+	Translation_Start_Site	DNP	CG	AT	AT	rs142755718		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:2988017_2988018CG>AT	uc002who.2	+	5	1692_1693	c.-154_-153CG>AT	c.(-156--151)ACCGGT>ACATGT		PTPRA_uc002whj.2_Missense_Mutation_p.P286H|PTPRA_uc002whk.2_Missense_Mutation_p.P277H|PTPRA_uc010zqd.1_Missense_Mutation_p.P297H|PTPRA_uc002whl.2_Missense_Mutation_p.P277H|PTPRA_uc002whm.2_Missense_Mutation_p.P53H|PTPRA_uc002whn.2_Missense_Mutation_p.P277H			P18433	PTPRA_HUMAN	SubName: Full=Protein tyrosine phosphatase, receptor type, A isoform 2 variant; Flags: Fragment;						axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						CACCTGACACCGGTTGAAGGGG	0.441000													8	197					0	0	6.4e-05	0	0
C20orf70	140683	broad.mit.edu	37	20	31760844	31760844	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:31760844C>T	uc002wyo.1	+	3	335	c.264C>T	c.(262-264)GTC>GTT	p.V88V		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	88						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						TGAACAATGTCATTTCTAAGC	0.463000													28	40					0	0	0.000184323	0	0
NCOA6	23054	broad.mit.edu	37	20	33364129	33364129	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:33364129G>A	uc002xav.2	-	5	2929	c.358C>T	c.(358-360)CGG>TGG	p.R120W	NCOA6_uc002xaw.2_Missense_Mutation_p.R120W|NCOA6_uc010gew.1_Missense_Mutation_p.R120W	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	120	TBP/GTF2A-binding region.|NCOA1-binding region.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CCTAAATCCCGAAGCTGCTGG	0.498000													18	47					0	0	0.000132079	0	0
MMP24	10893	broad.mit.edu	37	20	33842501	33842501	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:33842501G>A	uc002xbu.2	+	4	764	c.761G>A	c.(760-762)GGA>GAA	p.G254E	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	254	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GGGATTGGAGGAGACACCCAC	0.552000													52	53					0	0	0.000781405	0	0
CHD6	84181	broad.mit.edu	37	20	40161771	40161771	+	Silent	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:40161771G>T	uc002xka.1	-	3	650	c.472C>A	c.(472-474)CGG>AGG	p.R158R	CHD6_uc002xkd.2_Silent_p.R136R|CHD6_uc002xkc.2_Silent_p.R193R	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	158	Lys-rich.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GAGGCCTCCCGGGGCTTCCGT	0.587000													5	165					0.000602214	0.0065184	0.000602214	1	0
PTPRT	11122	broad.mit.edu	37	20	40944419	40944419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:40944419G>A	uc002xkg.2	-	12	2267	c.2083C>T	c.(2083-2085)CTC>TTC	p.L695F	PTPRT_uc010ggj.2_Missense_Mutation_p.L695F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	695	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGGGGAGAGAGAGGAGGGTTC	0.498000													35	35					0	0	0.000814825	0	0
PTPRT	11122	broad.mit.edu	37	20	41306677	41306677	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:41306677G>A	uc002xkg.2	-	7	1166	c.982C>T	c.(982-984)CGC>TGC	p.R328C	PTPRT_uc010ggj.2_Missense_Mutation_p.R328C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	328	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGGTGGTGCGATATTCCACT	0.562000													34	47					0	0	0.000692331	0	0
CD40	958	broad.mit.edu	37	20	44751836	44751836	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:44751836G>A	uc002xrg.1	+	5	552	c.475G>A	c.(475-477)GAA>AAA	p.E159K	CD40_uc002xrf.1_3'UTR|CD40_uc002xrh.1_Missense_Mutation_p.E159K|CD40_uc002xri.1_Missense_Mutation_p.E159K|CD40_uc002xrj.1_Intron|CD40_uc002xrk.1_Intron	NM_001250	NP_001241	P25942	TNR5_HUMAN	CD40 antigen isoform 1 precursor	159	TNFR-Cys 4.|Extracellular (Potential).				B cell proliferation|cellular response to mechanical stimulus|inflammatory response|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein complex assembly	CD40 receptor complex|extracellular region	enzyme binding|receptor activity			lung(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)			Simvastatin(DB00641)	ATCTGCTTTCGAAAAATGTCA	0.532000									Immune_Deficiency_with_Hyper-IgM				75	100					0	0	0.000781405	0	0
ELMO2	63916	broad.mit.edu	37	20	45012104	45012104	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:45012104A>G	uc002xrt.1	-	10	917	c.707T>C	c.(706-708)ATT>ACT	p.I236T	ELMO2_uc002xrs.1_5'Flank|ELMO2_uc002xru.1_Missense_Mutation_p.I236T|ELMO2_uc010zxr.1_Missense_Mutation_p.I236T|ELMO2_uc010zxs.1_Missense_Mutation_p.I53T|ELMO2_uc002xrw.2_Missense_Mutation_p.I53T|ELMO2_uc002xrx.1_Missense_Mutation_p.I236T	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	236					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AATCAGTGCAATGGCGTAGGT	0.443000													62	80					0	0	0.000781405	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353822	45353822	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:45353822C>T	uc002xsl.2	+	2	244	c.147C>T	c.(145-147)TTC>TTT	p.F49F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	49	Helical; Name=2; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGCAGGAGTTCCTGGTGGGCA	0.592000													28	49					0	0	0.000878237	0	0
NCOA3	8202	broad.mit.edu	37	20	46265098	46265098	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:46265098C>T	uc002xtk.2	+	12	2173	c.1968C>T	c.(1966-1968)CCC>CCT	p.P656P	NCOA3_uc010ght.1_Silent_p.P666P|NCOA3_uc002xtl.2_Silent_p.P656P|NCOA3_uc002xtm.2_Silent_p.P656P|NCOA3_uc002xtn.2_Silent_p.P656P|NCOA3_uc010zyc.1_Silent_p.P451P	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	656	Ser-rich.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TCACCAGCCCCTCTGGAGTCT	0.478000													27	39					0	0	0.000279167	0	0
MOCS3	27304	broad.mit.edu	37	20	49576218	49576218	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:49576218C>T	uc002xvy.1	+	1	856	c.839C>T	c.(838-840)GCC>GTC	p.A280V	DPM1_uc002xvw.1_5'Flank|DPM1_uc002xvx.1_5'Flank	NM_014484	NP_055299	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	280					enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity			skin(2)|ovary(1)	3						CTCTTTGATGCCCTGAGAGGG	0.607000													21	19					0	0	0.000295444	0	0
CASS4	57091	broad.mit.edu	37	20	55027325	55027325	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:55027325G>A	uc002xxp.2	+	6	1318	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K	CASS4_uc002xxq.3_Missense_Mutation_p.E365K|CASS4_uc002xxr.2_Missense_Mutation_p.E365K|CASS4_uc010zze.1_Missense_Mutation_p.E311K|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	365					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						GGCTGGGAAGGAGCTGGAGAA	0.507000													20	28					0	0	0.000175454	0	0
NTSR1	4923	broad.mit.edu	37	20	61340675	61340675	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr20:61340675C>T	uc002ydf.2	+	1	487	c.116C>T	c.(115-117)TCG>TTG	p.S39L		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	39	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			GGCAACGCTTCGGGCAACGCG	0.736000													9	9					0	0	0.000442599	0	0
DSCAM	1826	broad.mit.edu	37	21	41385160	41385160	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr21:41385160G>A	uc002yyq.1	-	33	6292	c.5840C>T	c.(5839-5841)CCG>CTG	p.P1947L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1947	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGCTTCCATCGGGATGGGCTC	0.657000													19	27					0	0	0.000958276	0	0
DSCAM	1826	broad.mit.edu	37	21	41719705	41719705	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr21:41719705C>T	uc002yyq.1	-	6	1554	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	368	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATAAGGTTTTCGTGGTTGATC	0.512000													60	90					0	0	0.000781405	0	0
PDE9A	5152	broad.mit.edu	37	21	44108041	44108041	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr21:44108041C>T	uc002zbm.2	+	3	218	c.155C>T	c.(154-156)TCC>TTC	p.S52F	PDE9A_uc002zbn.2_Intron|PDE9A_uc002zbo.2_Missense_Mutation_p.S52F|PDE9A_uc002zbp.2_Intron|PDE9A_uc002zbq.2_Silent_p.L28L|PDE9A_uc002zbs.2_Intron|PDE9A_uc002zbr.2_Intron|PDE9A_uc002zbt.2_Intron|PDE9A_uc002zbu.2_Missense_Mutation_p.S11F|PDE9A_uc002zbv.2_Intron|PDE9A_uc002zbw.2_Intron|PDE9A_uc002zbx.2_Missense_Mutation_p.S52F|PDE9A_uc002zby.2_Intron|PDE9A_uc002zbz.2_5'UTR|PDE9A_uc002zca.2_Missense_Mutation_p.S11F|PDE9A_uc002zcb.2_Intron|PDE9A_uc002zcc.2_Missense_Mutation_p.S11F|PDE9A_uc002zcd.2_Intron|PDE9A_uc002zce.2_Intron|PDE9A_uc002zcf.2_5'UTR|PDE9A_uc002zcg.2_Intron	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	52					platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						ACGACCATCTCCCTGCTGACC	0.602000													19	27					0	0	0.000229342	0	0
TRPM2	7226	broad.mit.edu	37	21	45799003	45799003	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr21:45799003C>T	uc002zet.1	+	9	1351	c.1138C>T	c.(1138-1140)CAG>TAG	p.Q380*	TRPM2_uc002zeu.1_Nonsense_Mutation_p.Q380*|TRPM2_uc002zew.1_Nonsense_Mutation_p.Q380*|TRPM2_uc010gpt.1_Nonsense_Mutation_p.Q380*|TRPM2_uc002zex.1_Nonsense_Mutation_p.Q166*	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	380	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTCCCTGATCCAGCAGAAACT	0.597000													37	42					0	0	0.000953801	0	0
CLTCL1	8218	broad.mit.edu	37	22	19223300	19223300	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:19223300G>A	uc002zpb.2	-	6	963	c.888C>T	c.(886-888)AAC>AAT	p.N296N	CLTCL1_uc011agv.1_Silent_p.N296N|CLTCL1_uc011agw.1_Silent_p.N296N	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	296	Globular terminal domain.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CACTAATACGGTTCATGCAGA	0.408000			T	?	ALCL								72	95					0	0	0.000781405	0	0
POM121L9P	29774	broad.mit.edu	37	22	24658478	24658478	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:24658478C>T	uc002zzs.3	+	6		c.3102C>T			uc011ajp.1_RNA	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TTCAGCGTGCCTGCGATGGCG	0.567000													5	15					0	0	3.59834e-05	0	0
MYO18B	84700	broad.mit.edu	37	22	26422418	26422418	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:26422418G>A	uc003abz.1	+	43	6728	c.6478G>A	c.(6478-6480)GAA>AAA	p.E2160K	MYO18B_uc003aca.1_Missense_Mutation_p.E2041K|MYO18B_uc010guy.1_Missense_Mutation_p.E2042K|MYO18B_uc010guz.1_Missense_Mutation_p.E2040K|MYO18B_uc011aka.1_Missense_Mutation_p.E1314K|MYO18B_uc011akb.1_Missense_Mutation_p.E1673K|MYO18B_uc010gva.1_Missense_Mutation_p.E143K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2160						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CAGGATAAACGAAGAGGCTGG	0.502000													78	90					0	0	0.000781405	0	0
MYO18B	84700	broad.mit.edu	37	22	26423017	26423017	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:26423017G>A	uc003abz.1	+	43	7327	c.7077G>A	c.(7075-7077)CCG>CCA	p.P2359P	MYO18B_uc003aca.1_Silent_p.P2240P|MYO18B_uc010guy.1_Silent_p.P2241P|MYO18B_uc010guz.1_Silent_p.P2239P|MYO18B_uc011aka.1_Silent_p.P1513P|MYO18B_uc011akb.1_Silent_p.P1872P|MYO18B_uc010gva.1_Silent_p.P342P|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2359						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AATCCAGACCGAGCATGGGGA	0.567000													27	59					0	0	0.000279167	0	0
HPS4	89781	broad.mit.edu	37	22	26866780	26866780	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:26866780C>T	uc003acl.2	-	7	1161	c.502_splice	c.e7-1	p.V168_splice	HPS4_uc003aci.2_Splice_Site_p.V163_splice|HPS4_uc003acj.2_Silent_p.Q13Q|HPS4_uc003ack.2_Splice_Site|HPS4_uc003acn.2_Silent_p.Q13Q|HPS4_uc010gvd.1_Splice_Site_p.V168_splice|HPS4_uc003ach.2_Splice_Site	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a						lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						GGGGCTCCACCTGTGCAGGGC	0.567000									Hermansky-Pudlak_syndrome				13	21					0	0	0.000151284	0	0
MYH9	4627	broad.mit.edu	37	22	36700073	36700073	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:36700073G>A	uc003apg.2	-	19	2589	c.2358C>T	c.(2356-2358)TTC>TTT	p.F786F	MYH9_uc003aph.1_Silent_p.F650F	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	786	IQ.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						AGCAGGCCTGGAACCCTATGA	0.622000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				19	28					0	0	0.000375601	0	0
SYNGR1	9145	broad.mit.edu	37	22	39772070	39772070	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:39772070C>T	uc003axq.3	+	3	413	c.351C>T	c.(349-351)TTC>TTT	p.F117F	SYNGR1_uc003axo.3_Silent_p.F117F|SYNGR1_uc003axp.3_Missense_Mutation_p.P84S|TAB1_uc003axr.2_Silent_p.F43F|SYNGR1_uc003axs.3_Silent_p.F118F	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	117	Helical; (Potential).|MARVEL.				regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					TCTGGGCTTTCCTCTGGTTCG	0.632000													68	62					0	0	0.000781405	0	0
TAB1	10454	broad.mit.edu	37	22	39824104	39824104	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:39824104C>T	uc003axt.2	+	10	1272	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F	TAB1_uc003axr.2_Missense_Mutation_p.S484F|TAB1_uc011aok.1_Missense_Mutation_p.S242F|TAB1_uc003axu.1_Missense_Mutation_p.S408F	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	408					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						GTGACCCTCTCCCTTGTCATG	0.622000													19	30					0	0	0.000229342	0	0
EFCAB6	64800	broad.mit.edu	37	22	43926756	43926756	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:43926756C>T	uc003bdy.1	-	31	4537	c.4322G>A	c.(4321-4323)CGC>CAC	p.R1441H	EFCAB6_uc003bdz.1_Missense_Mutation_p.R1289H|EFCAB6_uc010gzi.1_Missense_Mutation_p.R1289H	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1441	Interaction with AR.|EF-hand 16.|Interaction with PARK7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTTGAACGTGCGCCGCATTGG	0.562000													33	43					0	0	0.000814825	0	0
PHF21B	112885	broad.mit.edu	37	22	45309868	45309868	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:45309868G>A	uc003bfn.2	-	5	816	c.665C>T	c.(664-666)CCT>CTT	p.P222L	PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron|PHF21B_uc011aqm.1_Intron	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	222							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		gaggggtgaaggggacagtga	0.274000													25	35					0	0	0.00047179	0	0
CELSR1	9620	broad.mit.edu	37	22	46760441	46760441	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:46760441A>G	uc003bhw.1	-	33	8747	c.8747T>C	c.(8746-8748)CTT>CCT	p.L2916P		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2916	Cytoplasmic (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GCTGCTAGCAAGCCTGGCTGC	0.682000													12	43					0	0	0.000151284	0	0
CELSR1	9620	broad.mit.edu	37	22	46835151	46835151	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr22:46835151G>A	uc003bhw.1	-	3	4341	c.4341C>T	c.(4339-4341)TTC>TTT	p.F1447F		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1447	Extracellular (Potential).|Laminin G-like 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ACTGGGGCGGGAAGCTCCTGG	0.657000													29	40					0	0	0.000184323	0	0
FGD5	152273	broad.mit.edu	37	3	14861656	14861656	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:14861656G>A	uc003bzc.2	+	1	1188	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K	FGD5_uc011avk.1_Missense_Mutation_p.E360K	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	360					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TTTTTGCAGCGAGAGCTGTTC	0.527000													25	33					0	0	0.000878237	0	0
BTD	686	broad.mit.edu	37	3	15686329	15686329	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:15686329C>T	uc003cah.2	+	4	1069	c.966C>T	c.(964-966)TAC>TAT	p.Y322Y	BTD_uc011avv.1_Silent_p.Y324Y|BTD_uc011avw.1_Silent_p.Y324Y|BTD_uc011avx.1_Silent_p.Y302Y	NM_000060	NP_000051	P43251	BTD_HUMAN	biotinidase precursor	322	CN hydrolase.				central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity				0						CCTTTTGGTACCATGACATGG	0.502000													28	44					0	0	0.000147802	0	0
KAT2B	8850	broad.mit.edu	37	3	20136846	20136846	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:20136846T>A	uc003cbq.2	+	3	968	c.522T>A	c.(520-522)TGT>TGA	p.C174*		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	174					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCTTTACCTGTGTCCACAAGG	0.348000													7	11					0	0	0.000442599	0	0
NGLY1	55768	broad.mit.edu	37	3	25777523	25777523	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:25777523G>A	uc003cdl.2	-	7	1229	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F	NGLY1_uc010hfg.2_Intron|NGLY1_uc003cdm.2_Missense_Mutation_p.S374F|NGLY1_uc011awo.1_Missense_Mutation_p.S332F|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	374					glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						TATGACATAGGAAAGCTTCTT	0.333000													21	23					0	0	0.00047179	0	0
OSBPL10	114884	broad.mit.edu	37	3	32022478	32022478	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:32022478G>A	uc003cev.2	-	2	575	c.194C>T	c.(193-195)CCG>CTG	p.P65L	OSBPL10_uc011axf.1_Missense_Mutation_p.P65L|ZNF860_uc011axg.1_5'Flank	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	65					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		TCCCCCGGACGGGCTAGCGGC	0.622000													4	10					0	0	0.000602214	0	0
MLH1	4292	broad.mit.edu	37	3	37070385	37070385	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:37070385T>A	uc003cgl.2	+	13	1580	c.1520T>A	c.(1519-1521)TTG>TAG	p.L507*	MLH1_uc011aye.1_Nonsense_Mutation_p.L266*|MLH1_uc011ayb.1_Nonsense_Mutation_p.L266*|MLH1_uc010hge.2_Nonsense_Mutation_p.L507*|MLH1_uc003cgn.3_Nonsense_Mutation_p.L266*|MLH1_uc011ayc.1_Nonsense_Mutation_p.L409*|MLH1_uc011ayd.1_Nonsense_Mutation_p.L266*|MLH1_uc003cgo.2_Nonsense_Mutation_p.L266*|MLH1_uc010hgi.1_Nonsense_Mutation_p.L149*|MLH1_uc010hgj.1_Nonsense_Mutation_p.L149*|MLH1_uc010hgk.2_Nonsense_Mutation_p.L149*|MLH1_uc010hgl.1_Nonsense_Mutation_p.L82*|MLH1_uc010hgn.2_Nonsense_Mutation_p.L149*|MLH1_uc010hgm.2_RNA|MLH1_uc010hgo.2_Nonsense_Mutation_p.L149*	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	507	Interaction with EXO1.				mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						ACTAGTGTTTTGAGTCTCCAG	0.488000		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				82	144					0	0	0.000781405	0	0
DLEC1	9940	broad.mit.edu	37	3	38158038	38158039	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:38158038_38158039GG>AA	uc003cho.1	+	28	3972_3973	c.3951_3952GG>AA	c.(3949-3954)CGGGAC>CGAAAC	p.D1318N	DLEC1_uc003chp.1_Missense_Mutation_p.D1318N|DLEC1_uc010hgv.1_Missense_Mutation_p.D1321N|DLEC1_uc003chr.1_Missense_Mutation_p.D389N|DLEC1_uc010hgx.1_RNA|DLEC1_uc003chs.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1318					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		TCCCGCTGCGGGACCAAGCCGG	0.599000													31	57					0	0	6.4e-05	0	0
SCN11A	11280	broad.mit.edu	37	3	38936092	38936092	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:38936092C>T	uc011ays.1	-	15	2966	c.2767G>A	c.(2767-2769)GAA>AAA	p.E923K	SCN11A_uc010hhn.1_Missense_Mutation_p.E39K	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	923					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACGTCATCTTCCTCCTCCGCA	0.498000													56	122					0	0	0.000781405	0	0
COL7A1	1294	broad.mit.edu	37	3	48626159	48626159	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:48626159C>T	uc003ctz.2	-	19	2504	c.2503G>A	c.(2503-2505)GAA>AAA	p.E835K		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	835	Nonhelical region (NC1).|Fibronectin type-III 7.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACTCCACCTTCGAGACCCCGG	0.602000													54	16					0	0	0.000781405	0	0
COL7A1	1294	broad.mit.edu	37	3	48629347	48629347	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:48629347T>A	uc003ctz.2	-	10	1342	c.1341A>T	c.(1339-1341)GAA>GAT	p.E447D		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	447	Nonhelical region (NC1).|Fibronectin type-III 3.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CACGCCGCCATTCCAACCGGT	0.627000													63	43					0	0	0.000781405	0	0
BSN	8927	broad.mit.edu	37	3	49701949	49701949	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:49701949C>T	uc003cxe.3	+	9	11816	c.11702C>T	c.(11701-11703)CCT>CTT	p.P3901L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3901					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AAGATCCTCCCTGGCGGGGCA	0.647000													38	42					0	0	0.000270559	0	0
SLC38A3	10991	broad.mit.edu	37	3	50255384	50255384	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:50255384C>T	uc003cyn.3	+	11	1032	c.891C>T	c.(889-891)TTC>TTT	p.F297F	SLC38A3_uc011bdl.1_Silent_p.F272F|SLC38A3_uc011bdm.1_Silent_p.F228F	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	297					cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	CCTTCGCCTTCGTCTGCCACC	0.617000													13	34					0	0	0.000308642	0	0
DOCK3	1795	broad.mit.edu	37	3	51274960	51274960	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:51274960C>T	uc011bds.1	+	21	2064	c.2041C>T	c.(2041-2043)CAC>TAC	p.H681Y		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	681						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAAGTATTTTCACTTTCGACC	0.468000													20	16					0	0	0.00047179	0	0
FLNB	2317	broad.mit.edu	37	3	58135878	58135878	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:58135878G>C	uc003djj.2	+	38	6456	c.6291G>C	c.(6289-6291)GAG>GAC	p.E2097D	FLNB_uc010hne.2_Missense_Mutation_p.E2128D|FLNB_uc003djk.2_Missense_Mutation_p.E2086D|FLNB_uc010hnf.2_Missense_Mutation_p.E2073D|FLNB_uc003djl.2_Missense_Mutation_p.E1917D|FLNB_uc003djm.2_Missense_Mutation_p.E1904D|FLNB_uc010hng.1_RNA	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2097	Filamin 20.|Interaction with FLNA 1.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GAGTCAAAGAGAGCATCACCC	0.597000													52	111					0	0	0.000781405	0	0
MAGI1	9223	broad.mit.edu	37	3	65361455	65361455	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:65361455C>T	uc003dmn.2	-	18	3687	c.3161G>A	c.(3160-3162)GGA>GAA	p.G1054E	MAGI1_uc003dmm.2_Missense_Mutation_p.G1082E|MAGI1_uc003dmo.2_Missense_Mutation_p.G1083E|MAGI1_uc003dmp.2_Intron	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1083					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		AACTGTGTTTCCCGCTTCCTT	0.343000													149	79					0	0	0.000781405	0	0
MIR1324	100302212	broad.mit.edu	37	3	75679939	75679939	+	RNA	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:75679939C>T	hsa-mir-1324|MI0006657	+			c.26C>T																				0						GAAGCCTGGTCCTGCCCTCAC	0.552000													8	46					0	0	6.40141e-05	0	0
OR5H14	403273	broad.mit.edu	37	3	97868313	97868313	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:97868313C>T	uc003dsg.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	28	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TACCCCTGTTCCTGGCATTCT	0.423000													23	30					0	0	0.000953801	0	0
MYH15	22989	broad.mit.edu	37	3	108183485	108183485	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:108183485C>T	uc003dxa.1	-	16	1848	c.1791G>A	c.(1789-1791)GTG>GTA	p.V597V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	597	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GGTAACTCACCACTCCTGCAT	0.398000													41	68					0	0	0.000589545	0	0
MORC1	27136	broad.mit.edu	37	3	108682299	108682299	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:108682299G>A	uc003dxl.2	-	27	2848	c.2761C>T	c.(2761-2763)CGT>TGT	p.R921C	MORC1_uc011bhn.1_Missense_Mutation_p.R900C	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	921	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AGTTTTATACGAAGATTCTTC	0.259000													42	59					0	0	0.000781405	0	0
MORC1	27136	broad.mit.edu	37	3	108705742	108705742	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:108705742G>A	uc003dxl.2	-	22	2329	c.2242C>T	c.(2242-2244)CCT>TCT	p.P748S	MORC1_uc011bhn.1_Missense_Mutation_p.P727S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	748	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTTAAAAGAGGAATTTCCTTT	0.279000													6	5					0	0	8.12818e-05	0	0
CD200R1	131450	broad.mit.edu	37	3	112647760	112647760	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:112647760C>A	uc003dzk.1	-	4	836	c.603G>T	c.(601-603)AAG>AAT	p.K201N	CD200R1_uc003dzj.1_Missense_Mutation_p.K224N|CD200R1_uc011bhx.1_Missense_Mutation_p.K179N	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	201	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						GGCATGTACTCTTAACAGTCA	0.527000													13	14					6.53275e-17	7.20849e-16	0.000219431	1	0
PLA1A	51365	broad.mit.edu	37	3	119336952	119336952	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:119336952C>T	uc003ecu.2	+	7	880	c.841C>T	c.(841-843)CCC>TCC	p.P281S	PLA1A_uc003ecv.2_Missense_Mutation_p.P265S|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Missense_Mutation_p.P108S	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	281					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GATGGCCTTTCCCTGTGCCAG	0.498000													127	177					0	0	0.000781405	0	0
MYLK	4638	broad.mit.edu	37	3	123366165	123366165	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:123366165C>T	uc003ego.2	-	27	4807	c.4525G>A	c.(4525-4527)GAG>AAG	p.E1509K	MYLK_uc010hrr.2_Intron|MYLK_uc011bjv.1_Missense_Mutation_p.E309K|MYLK_uc011bjw.1_Missense_Mutation_p.E1509K|MYLK_uc003egp.2_Missense_Mutation_p.E1440K|MYLK_uc003egq.2_Missense_Mutation_p.E1509K|MYLK_uc003egr.2_Missense_Mutation_p.E1440K|MYLK_uc003egs.2_Missense_Mutation_p.E1333K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1509	Protein kinase.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ATGCTAATCTCCTGCCGGATA	0.468000													13	35					0	0	0.000308642	0	0
MYLK	4638	broad.mit.edu	37	3	123376127	123376127	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:123376127C>T	uc003ego.2	-	24	4416	c.4134G>A	c.(4132-4134)TGG>TGA	p.W1378*	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Nonsense_Mutation_p.W178*|MYLK_uc011bjw.1_Nonsense_Mutation_p.W1378*|MYLK_uc003egp.2_Nonsense_Mutation_p.W1309*|MYLK_uc003egq.2_Nonsense_Mutation_p.W1378*|MYLK_uc003egr.2_Nonsense_Mutation_p.W1309*|MYLK_uc003egs.2_Nonsense_Mutation_p.W1202*	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1378	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Fibronectin type-III.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CTAGTTCCTTCCACGTCTTGT	0.537000													25	26					0	0	0.000586117	0	0
KALRN	8997	broad.mit.edu	37	3	123946845	123946845	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:123946845C>T	uc003ehg.2	+	2	203	c.76C>T	c.(76-78)CGG>TGG	p.R26W	KALRN_uc010hrv.1_Missense_Mutation_p.R26W|KALRN_uc003ehf.1_Missense_Mutation_p.R26W|KALRN_uc011bjy.1_Missense_Mutation_p.R26W	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	26					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGGGTCTTTTCGGAATGATGG	0.483000													58	76					0	0	0.000781405	0	0
KALRN	8997	broad.mit.edu	37	3	124103703	124103703	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:124103703C>T	uc003ehg.2	+	11	1903	c.1776C>T	c.(1774-1776)ACC>ACT	p.T592T	KALRN_uc010hrv.1_Silent_p.T592T|KALRN_uc003ehf.1_Silent_p.T592T|KALRN_uc011bjy.1_Silent_p.T592T|KALRN_uc003ehh.1_5'UTR	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	592	Spectrin 3.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ATACGTACACCAATGCGGACA	0.607000													15	25					0	0	0.000308642	0	0
PLXNA1	5361	broad.mit.edu	37	3	126708282	126708282	+	Silent	SNP	C	T	T	rs146246704		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:126708282C>T	uc003ejg.2	+	1	781	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	282	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CGTCCAAGATCGTGCGGCTCT	0.602000													55	93					0	0	0.000781405	0	0
TMEM108	66000	broad.mit.edu	37	3	133098855	133098855	+	Silent	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:133098855C>A	uc003eph.2	+	4	574	c.300C>A	c.(298-300)ATC>ATA	p.I100I	TMEM108_uc003epi.2_Silent_p.I100I|TMEM108_uc003epj.1_Silent_p.I100I|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Silent_p.I51I	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	100	Pro-rich.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						TCTCCACCATCGCTGCGACAG	0.662000													28	35					2.85442e-18	3.15439e-17	0.000339439	1	0
PPP2R3A	5523	broad.mit.edu	37	3	135721893	135721893	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:135721893C>T	uc003eqv.1	+	2	2118	c.1553C>T	c.(1552-1554)TCT>TTT	p.S518F	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	518					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						GATTTGGAATCTTTTTCACAG	0.368000													23	36					0	0	0.00047179	0	0
A4GNT	51146	broad.mit.edu	37	3	137843178	137843179	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:137843178_137843179GG>TT	uc003ers.2	-	3	1152_1153	c.950_951CC>AA	c.(949-951)CCC>CAA	p.P317Q		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	317	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						TGTAAGTCCTGGGACAGTGCTT	0.525000													13	422					0	0	6.4e-05	0	0
FAIM	55179	broad.mit.edu	37	3	138351814	138351815	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:138351814_138351815GG>TT	uc003esr.2	+	5	693_694	c.433_434GG>TT	c.(433-435)GGG>TTG	p.G145L	FAIM_uc003esp.2_Missense_Mutation_p.G179L|FAIM_uc003esq.2_Missense_Mutation_p.G167L|FAIM_uc003ess.2_Missense_Mutation_p.G145L	NM_001033032	NP_001028204	Q9NVQ4	FAIM1_HUMAN	Fas apoptotic inhibitory molecule isoform c	145					apoptosis	cytoplasm					0						CTTCAGTATCGGGAACCATGAC	0.416000													7	361					0	0	6.4e-05	0	0
TM4SF18	116441	broad.mit.edu	37	3	149042780	149042780	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:149042780G>A	uc003exa.2	-	4	434	c.297C>T	c.(295-297)CTC>CTT	p.L99L		NM_138786	NP_620141	Q96CE8	T4S18_HUMAN	transmembrane 4 L six family member 18	99	Helical; (Potential).					integral to membrane				ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			AAGCAATTCCGAGGGAAGAAA	0.433000													8	21					0	0	0.000442599	0	0
FAM194A	131831	broad.mit.edu	37	3	150403561	150403561	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:150403561C>T	uc003eyg.2	-	6	808	c.751G>A	c.(751-753)GAA>AAA	p.E251K	FAM194A_uc003eyh.2_Missense_Mutation_p.E105K	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	251										skin(2)|ovary(1)	3						GAGCTCTCTTCTTTGTATGCC	0.338000													26	30					0	0	0.000184323	0	0
MED12L	116931	broad.mit.edu	37	3	150908650	150908650	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:150908650C>T	uc003eyp.2	+	13	1938	c.1900C>T	c.(1900-1902)CGG>TGG	p.R634W	MED12L_uc011bnz.1_Missense_Mutation_p.R494W|MED12L_uc003eyn.2_Missense_Mutation_p.R634W|MED12L_uc003eyo.2_Missense_Mutation_p.R634W	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	634					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGCCTCAACTCGGCCGCGGTC	0.517000													18	42					0	0	0.000958276	0	0
P2RY13	53829	broad.mit.edu	37	3	151046191	151046191	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:151046191C>T	uc003eyv.2	-	2	674	c.653G>A	c.(652-654)TGG>TAG	p.W218*	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	218	Helical; Name=5; (Potential).					integral to membrane|plasma membrane		p.W197L(1)		ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			AAAAACAGTCCAGAAAATAAA	0.353000													14	21					0	0	0.000422831	0	0
AADAC	13	broad.mit.edu	37	3	151545698	151545698	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:151545698G>A	uc003eze.2	+	5	1028	c.938G>A	c.(937-939)GGG>GAG	p.G313E		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	313	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AAATATCCAGGGTTCCTAGAT	0.418000													15	17					0	0	0.000422831	0	0
SI	6476	broad.mit.edu	37	3	164757739	164757739	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:164757739C>T	uc003fei.2	-	19	2242	c.2180G>A	c.(2179-2181)AGC>AAC	p.S727N		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	727	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CTCAATCCAGCTGTTCGTATC	0.338000										HNSCC(35;0.089)			27	48					0	0	0.000227799	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907672	164907672	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:164907672G>A	uc003fej.3	-	2	1391	c.947C>T	c.(946-948)TCT>TTT	p.S316F	SLITRK3_uc003fek.2_Missense_Mutation_p.S316F	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	316	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						AAAATGAACAGAGGATAGCAT	0.468000										HNSCC(40;0.11)			60	78					0	0	0.000781405	0	0
GNB4	59345	broad.mit.edu	37	3	179132722	179132722	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:179132722C>T	uc003fjv.3	-	6	661	c.381G>A	c.(379-381)AAG>AAA	p.K127K	GNB4_uc003fju.3_Silent_p.K38K	NM_021629	NP_067642	Q9HAV0	GBB4_HUMAN	guanine nucleotide-binding protein, beta-4	127	WD 2.				cellular response to glucagon stimulus|energy reserve metabolic process	plasma membrane	signal transducer activity			skin(2)	2	all_cancers(143;2.01e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.237)			CCTCTCTGGTCTTTAAGTTAT	0.473000													107	126					0	0	0.000781405	0	0
MUC4	4585	broad.mit.edu	37	3	195516204	195516204	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:195516204C>T	uc011bto.1	-	2	2707	c.2247G>A	c.(2245-2247)GGG>GGA	p.G749G	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Silent_p.G631G	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	754					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CTTCTGGGCCCCCTGGTGTTG	0.602000													47	54					0	0	0.000781405	0	0
MUC4	4585	broad.mit.edu	37	3	195516819	195516819	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:195516819C>T	uc011bto.1	-	2	2092	c.1632G>A	c.(1630-1632)GAG>GAA	p.E544E	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Silent_p.E426E	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	549					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ATGTGGTGGGCTCTCCTGGTT	0.562000													74	70					0	0	0.000781405	0	0
ZDHHC19	131540	broad.mit.edu	37	3	195938160	195938160	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:195938160C>T	uc003fwc.2	-	1	141	c.27G>A	c.(25-27)CCG>CCA	p.P9P	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_RNA|ZDHHC19_uc010iab.2_RNA	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	9						integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		CCTTCACCAGCGGCGTGGCAT	0.627000													24	55					0	0	0.000586117	0	0
PDE6B	5158	broad.mit.edu	37	4	657927	657927	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:657927C>T	uc003gap.2	+	17	2099	c.2046C>T	c.(2044-2046)ATC>ATT	p.I682I	PDE6B_uc003gao.3_Silent_p.I682I|PDE6B_uc011buy.1_Silent_p.I403I|PDE6B_uc011buz.1_Silent_p.I114I	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	682					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						TTCAGAAGATCGTGGATGAGT	0.607000													32	50					0	0	0.000814825	0	0
WHSC1	7468	broad.mit.edu	37	4	1957846	1957847	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:1957846_1957847CC>TA	uc003gdz.3	+	15	2988_2989	c.2812_2813CC>TA	c.(2812-2814)CCG>TAG	p.P938*	WHSC1_uc003geb.3_Nonsense_Mutation_p.P938*|WHSC1_uc003gec.3_Nonsense_Mutation_p.P938*|WHSC1_uc003ged.3_Nonsense_Mutation_p.P938*|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Nonsense_Mutation_p.P157*|WHSC1_uc011bvh.1_5'UTR|WHSC1_uc010icf.2_Nonsense_Mutation_p.P286*	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	938	PWWP 2.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		GCGAGTGTTCCCGTACATGGAG	0.500000			T	IGH@	MM								97	111					0	0	6.4e-05	0	0
DOK7	285489	broad.mit.edu	37	4	3465143	3465143	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:3465143G>A	uc003ghd.2	+	1	111	c.41G>A	c.(40-42)CGG>CAG	p.R14Q	DOK7_uc003ghe.2_5'UTR	NM_173660	NP_775931	Q18PE1	DOK7_HUMAN	downstream of tyrosine kinase 7 isoform 1	14	PH.				positive regulation of protein tyrosine kinase activity	cell junction|synapse	insulin receptor binding|protein kinase binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GTCAAGCTGCGGGACGGCAAG	0.383000													11	11					0	0	0.000219431	0	0
OTOP1	133060	broad.mit.edu	37	4	4199727	4199727	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:4199727C>T	uc003ghp.1	-	5	864	c.834G>A	c.(832-834)CAG>CAA	p.Q278Q		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	278	Helical; (Potential).				biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AGGCCAGGATCTGATACTCTA	0.532000													30	45					0	0	0.000279167	0	0
ZNF518B	85460	broad.mit.edu	37	4	10446348	10446348	+	Silent	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:10446348T>C	uc003gmn.2	-	3	2092	c.1605A>G	c.(1603-1605)GCA>GCG	p.A535A		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	535					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						AGGAACAGGTTGCAGGTGATG	0.398000													25	34					0	0	0.000720815	0	0
LGI2	55203	broad.mit.edu	37	4	25005432	25005432	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:25005432G>A	uc003grf.2	-	8	1378	c.1279C>T	c.(1279-1281)CGA>TGA	p.R427*		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	427	EAR 5.					extracellular region					0		Breast(46;0.173)				TTTTGCATTCGGAAGCTCTTC	0.522000													93	115					0	0	0.000781405	0	0
ATP10D	57205	broad.mit.edu	37	4	47565627	47565627	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:47565627G>A	uc003gxk.1	+	15	2862	c.2698G>A	c.(2698-2700)GAG>AAG	p.E900K	ATP10D_uc003gxl.1_Missense_Mutation_p.E148K	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	900	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CCGTCTGCAGGAGGGAGTCCC	0.473000													20	29					0	0	0.000720815	0	0
CNGA1	1259	broad.mit.edu	37	4	47939760	47939760	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:47939760G>A	uc003gxt.3	-	11	1017	c.751C>T	c.(751-753)CTG>TTG	p.L251L	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Silent_p.L320L	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	251	Helical; Name=H3; (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ATCAGTGACAGAACATCAAGT	0.323000													47	71					0	0	0.000781405	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079874	70079874	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:70079874G>A	uc003heh.2	-	1	576	c.567C>T	c.(565-567)TTC>TTT	p.F189F	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	189					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						AGGAAGGAGGGAAAATCAGTC	0.403000													9	3					0	0	0.000442599	0	0
HTN3	3347	broad.mit.edu	37	4	70898915	70898915	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:70898915C>T	uc003hew.2	+	5	251	c.134C>T	c.(133-135)TCA>TTA	p.S45L		NM_000200	NP_000191	P15516	HIS3_HUMAN	histatin 3	45					biomineral tissue development|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	metal ion binding|protein binding			ovary(1)|skin(1)	2						GGCTATAGATCAAATTATCTG	0.373000													5	15					0	0	0.000602214	0	0
AFF1	4299	broad.mit.edu	37	4	88029343	88029343	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:88029343C>T	uc003hqj.3	+	10	1795	c.1388C>T	c.(1387-1389)TCA>TTA	p.S463L	AFF1_uc011ccz.1_Missense_Mutation_p.S470L|AFF1_uc003hqk.3_Missense_Mutation_p.S463L|AFF1_uc011cda.1_Missense_Mutation_p.S101L	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	463						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		CCAGTGGCATCAGCACATTCC	0.483000													16	42					0	0	0.00074312	0	0
ADH1B	125	broad.mit.edu	37	4	100235017	100235017	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:100235017C>T	uc003hus.3	-	6	873	c.789G>A	c.(787-789)GTG>GTA	p.V263V	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.V223V|ADH1B_uc011ceh.1_Silent_p.V108V|ADH1B_uc011cei.1_Silent_p.V223V	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	263					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACGAAAAATCCACACCTCCAT	0.468000													72	104					0	0	0.000781405	0	0
PPA2	27068	broad.mit.edu	37	4	106377875	106377875	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:106377875G>A	uc003hxl.2	-	2	205	c.185C>T	c.(184-186)CCC>CTC	p.P62L	PPA2_uc003hxm.2_Missense_Mutation_p.P62L|PPA2_uc003hxn.2_Missense_Mutation_p.P62L|PPA2_uc003hxo.2_Missense_Mutation_p.P62L|PPA2_uc003hxp.2_Intron|PPA2_uc003hxq.2_5'UTR|PPA2_uc003hxr.2_Intron|PPA2_uc011cfa.1_Intron	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	62					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		ATCATGAAAGGGGGAAATGTA	0.348000													58	78					0	0	0.000781405	0	0
PITX2	5308	broad.mit.edu	37	4	111539826	111539826	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:111539826G>A	uc003iad.2	-	5	991	c.409C>T	c.(409-411)CGG>TGG	p.R137W	PITX2_uc003iac.2_Missense_Mutation_p.R144W|PITX2_uc003iae.2_Missense_Mutation_p.R91W|PITX2_uc010iml.2_Missense_Mutation_p.R8W|PITX2_uc003iaf.2_Missense_Mutation_p.R137W	NM_153426	NP_700475	Q99697	PITX2_HUMAN	paired-like homeodomain transcription factor 2	137	Homeobox.		R -> P (in RIEG1).		determination of left/right symmetry|organ morphogenesis	transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription factor binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00222)		CATTTGGCCCGACGATTCTTG	0.572000													34	36					0	0	0.000270559	0	0
IL21	59067	broad.mit.edu	37	4	123542159	123542159	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:123542159G>A	uc003ies.2	-	1	53	c.8C>T	c.(7-9)TCC>TTC	p.S3F	uc003iet.2_RNA|IL21_uc010int.2_5'UTR	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						GCCAGGACTGGATCTCATAAG	0.458000													23	22					0	0	0.000375601	0	0
NPY2R	4887	broad.mit.edu	37	4	156135508	156135508	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:156135508C>T	uc003ioq.2	+	2	912	c.417C>T	c.(415-417)ATC>ATT	p.I139I	NPY2R_uc003ior.2_Silent_p.I139I	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	139	Helical; Name=3; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TATCCACAATCACCTTGACAG	0.527000													14	21					0	0	0.000308642	0	0
RXFP1	59350	broad.mit.edu	37	4	159573010	159573010	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:159573010C>T	uc003ipz.2	+	18	2159	c.2077C>T	c.(2077-2079)CAT>TAT	p.H693Y	RXFP1_uc011cja.1_Missense_Mutation_p.H588Y|RXFP1_uc010iqo.2_Missense_Mutation_p.H645Y|RXFP1_uc011cjb.1_Missense_Mutation_p.H591Y|RXFP1_uc010iqk.2_Missense_Mutation_p.H561Y|RXFP1_uc011cjc.1_Missense_Mutation_p.H612Y|RXFP1_uc011cjd.1_Missense_Mutation_p.H612Y|RXFP1_uc010iql.2_Missense_Mutation_p.H537Y|RXFP1_uc011cje.1_Missense_Mutation_p.H720Y|RXFP1_uc010iqm.2_Missense_Mutation_p.H660Y|RXFP1_uc011cjf.1_Missense_Mutation_p.H562Y|RXFP1_uc010iqn.2_Missense_Mutation_p.H638Y	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	693	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		AGAAATGATTCATCGGTTTTG	0.388000													29	38					0	0	0.000184323	0	0
TRIM60	166655	broad.mit.edu	37	4	165962177	165962177	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:165962177G>A	uc003iqy.1	+	3	1123	c.953G>A	c.(952-954)CGA>CAA	p.R318Q	TRIM60_uc010iqx.1_Missense_Mutation_p.R318Q	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	318	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		AAAGCTGTGCGATATGAAAGA	0.413000													49	50					0	0	0.000781405	0	0
TLL1	7092	broad.mit.edu	37	4	166996085	166996085	+	Silent	SNP	G	A	A	rs115884871	byFrequency	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:166996085G>A	uc003irh.1	+	17	2891	c.2244G>A	c.(2242-2244)ACG>ACA	p.T748T	TLL1_uc011cjn.1_Silent_p.T771T|TLL1_uc011cjo.1_Silent_p.T572T	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	748	EGF-like 2; calcium-binding (Potential).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GTGTCAACACGATGGGGAGCT	0.383000													26	35					0	0	0.00047179	0	0
MORF4	10934	broad.mit.edu	37	4	174537659	174537659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:174537659G>A	uc011cke.1	-	1	136	c.136C>T	c.(136-138)CGA>TGA	p.R46*		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		CTTTTCTTTCGAGGAGGCTGG	0.403000													42	44					0	0	0.000437636	0	0
AGA	175	broad.mit.edu	37	4	178358577	178358577	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr4:178358577G>A	uc003iuu.1	-	5	666	c.604C>T	c.(604-606)CGT>TGT	p.R202C	AGA_uc010irt.1_5'Flank|AGA_uc003iuv.1_Missense_Mutation_p.R106C|AGA_uc003iuw.2_Missense_Mutation_p.R106C	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	202					asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		TCATGACCACGATCATCTTCT	0.373000													26	24					0	0	0.000586117	0	0
DNAH5	1767	broad.mit.edu	37	5	13931332	13931332	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:13931332C>T	uc003jfd.2	-	2	121	c.79G>A	c.(79-81)GAA>AAA	p.E27K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	27	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGCTTGGCTTCCTTCTCTCCC	0.393000									Kartagener_syndrome				25	40					0	0	0.000184323	0	0
PRDM9	56979	broad.mit.edu	37	5	23527798	23527798	+	Silent	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:23527798G>T	uc003jgo.2	+	11	2783	c.2601G>T	c.(2599-2601)CGG>CGT	p.R867R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	867	C2H2-type 14.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGTGTGGGCGGGGCTTTAGCG	0.557000										HNSCC(3;0.000094)			16	37					4.14922e-12	4.55796e-11	0.000422831	1	0
PRLR	5618	broad.mit.edu	37	5	35065415	35065415	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:35065415C>T	uc003jjm.2	-	10	2175	c.1645G>A	c.(1645-1647)GTG>ATG	p.V549M	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.V448M	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	549	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	ACCCCGGACACCTTGGCATAC	0.498000													30	32					0	0	0.000184323	0	0
CAPSL	133690	broad.mit.edu	37	5	35910027	35910027	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:35910027C>T	uc003jjt.1	-	4	561	c.466G>A	c.(466-468)GAA>AAA	p.E156K	CAPSL_uc003jju.1_Missense_Mutation_p.E156K	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	156	EF-hand 4.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			AATACTTGTTCCTCACTCCAT	0.378000													55	79					0	0	0.000781405	0	0
LIFR	3977	broad.mit.edu	37	5	38527298	38527298	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:38527298C>T	uc010ive.1	-	4	688	c.356G>A	c.(355-357)GGA>GAA	p.G119E	LIFR_uc003jli.2_Missense_Mutation_p.G119E	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	119	Extracellular (Potential).|Fibronectin type-III 1.				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TGTAGAACTTCCAAAATCATG	0.303000			T	PLAG1	salivary adenoma								8	12					0	0	0.000274275	0	0
HMGCS1	3157	broad.mit.edu	37	5	43294168	43294168	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:43294168A>C	uc003jnr.3	-	8	1380	c.1173T>G	c.(1171-1173)GAT>GAG	p.D391E	HMGCS1_uc003jnp.3_Missense_Mutation_p.D72E|HMGCS1_uc003jnq.3_Missense_Mutation_p.D391E	NM_001098272	NP_001091742	Q01581	HMCS1_HUMAN	hydroxymethylglutaryl-CoA synthase 1	391					cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|soluble fraction	hydroxymethylglutaryl-CoA synthase activity				0						CCGGTGTAGCATCTTGTGTGA	0.323000													9	30					0	0	0.000442599	0	0
HCN1	348980	broad.mit.edu	37	5	45262553	45262553	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:45262553G>A	uc003jok.2	-	8	2168	c.2143C>T	c.(2143-2145)CGA>TGA	p.R715*		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	715	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TGGAAAGTTCGAGCGGCCAGA	0.468000													18	16					0	0	0.000958276	0	0
HCN1	348980	broad.mit.edu	37	5	45645578	45645578	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:45645578G>A	uc003jok.2	-	2	583	c.558C>T	c.(556-558)TTC>TTT	p.F186F		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	186	Helical; Name=Segment S2; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGTCCAATAGGAAAACTGTAT	0.368000													16	21					0	0	0.000308642	0	0
PARP8	79668	broad.mit.edu	37	5	50091099	50091099	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:50091099C>T	uc003jon.3	+	13	1458	c.1276C>T	c.(1276-1278)CAC>TAC	p.H426Y	PARP8_uc011cpz.1_Missense_Mutation_p.H318Y|PARP8_uc003joo.2_Missense_Mutation_p.H426Y|PARP8_uc003jop.2_Missense_Mutation_p.H426Y	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	426						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				ACTGAAAAATCACAAATTGCT	0.448000													19	30					0	0	0.000958276	0	0
NLN	57486	broad.mit.edu	37	5	65108166	65108166	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:65108166C>T	uc003juf.2	+	12	2044	c.1928C>T	c.(1927-1929)TCC>TTC	p.S643F	NLN_uc003jug.2_Missense_Mutation_p.S472F|NLN_uc010iww.2_Missense_Mutation_p.S320F	NM_020726	NP_065777	Q9BYT8	NEUL_HUMAN	neurolysin precursor	643					proteolysis	mitochondrial intermembrane space	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0743)|Lung(70;0.00616)		GAAGTATTTTCCATGGATATG	0.348000													23	33					0	0	0.000375601	0	0
BDP1	55814	broad.mit.edu	37	5	70819834	70819834	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:70819834C>T	uc003kbp.1	+	25	5719	c.5456C>T	c.(5455-5457)TCT>TTT	p.S1819F	BDP1_uc003kbo.2_Missense_Mutation_p.S1819F|BDP1_uc003kbq.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1819					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		ACTATCTCTTCTACATCTGAG	0.388000													37	42					0	0	0.000191422	0	0
DMGDH	29958	broad.mit.edu	37	5	78338222	78338222	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:78338222C>T	uc003kfs.2	-	7	1083	c.1077G>A	c.(1075-1077)TTG>TTA	p.L359L	DMGDH_uc011cte.1_Silent_p.L209L|DMGDH_uc011ctf.1_Silent_p.L158L|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	359					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		CAGCCTTTTTCAAGACAGGAA	0.448000													24	38					0	0	0.000878237	0	0
THBS4	7060	broad.mit.edu	37	5	79357541	79357541	+	Silent	SNP	G	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:79357541G>C	uc003kgh.2	+	9	1334	c.1011G>C	c.(1009-1011)CCG>CCC	p.P337P		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	337	EGF-like 2; calcium-binding (Potential).				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		CCTGCTACCCGGGCGTGCACT	0.488000													4	108					0	0	0.00024832	0	0
ATG10	83734	broad.mit.edu	37	5	81549195	81549195	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:81549195C>T	uc003khs.2	+	8	1043	c.614C>T	c.(613-615)CCT>CTT	p.P205L	ATG10_uc003khr.2_Missense_Mutation_p.P205L|ATG10_uc010jas.2_Missense_Mutation_p.P169L	NM_001131028	NP_001124500	Q9H0Y0	ATG10_HUMAN	APG10 autophagy 10-like	205					autophagy in response to ER overload|positive regulation of protein modification process|protein lipidation|protein modification by small protein conjugation|protein transport	cytoplasm	Atg12 ligase activity|protein binding				0		Lung NSC(167;0.0258)|all_lung(232;0.0294)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;9.94e-41)|Epithelial(54;6.3e-36)|all cancers(79;2.31e-30)		CTGAATCTACCTCTGAGTTAT	0.413000													48	67					0	0	0.000781405	0	0
GPR98	84059	broad.mit.edu	37	5	89931004	89931004	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:89931004A>G	uc003kju.2	+	10	2009	c.1913A>G	c.(1912-1914)AAT>AGT	p.N638S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	638	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAAATCTGCAATATTTCTTTA	0.358000													20	19					0	0	0.000132079	0	0
GPR98	84059	broad.mit.edu	37	5	90106807	90106807	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:90106807C>T	uc003kju.2	+	74	15826	c.15730C>T	c.(15730-15732)CTT>TTT	p.L5244F	GPR98_uc003kjt.2_Missense_Mutation_p.L2950F|GPR98_uc003kjw.2_Missense_Mutation_p.L905F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5244	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGCAGAAGTTCTTATCCGAAG	0.423000													36	42					0	0	0.000319135	0	0
RIOK2	55781	broad.mit.edu	37	5	96504523	96504523	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:96504523A>T	uc003kmz.2	-	7	923	c.813T>A	c.(811-813)GAT>GAA	p.D271E	RIOK2_uc003kna.3_Missense_Mutation_p.D271E	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	271	Protein kinase.						ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		TCATAAAGAAATCTTTAATGC	0.318000													36	55					0	0	0.00058488	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101572563	101572563	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:101572563C>T	uc003knm.2	-	13	2461	c.2174G>A	c.(2173-2175)TGA>TAA	p.*725*		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	725					cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TTTCCCATTTCACCCTTCTTT	0.378000													19	31					0	0	0.000175454	0	0
ZNF474	133923	broad.mit.edu	37	5	121488712	121488712	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:121488712G>A	uc003ksv.2	+	2	1403	c.1027G>A	c.(1027-1029)GTA>ATA	p.V343I		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	343						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		AGCACCCAGTGTAACTGATAA	0.458000													16	30					0	0	0.000422831	0	0
KDM3B	51780	broad.mit.edu	37	5	137756405	137756405	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:137756405C>T	uc003lcy.1	+	15	3926	c.3726C>T	c.(3724-3726)TCC>TCT	p.S1242S	KDM3B_uc010jew.1_Silent_p.S898S|KDM3B_uc011cys.1_Silent_p.S274S	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1242					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AAGCAGGGTCCCTGAGGTCGG	0.458000													42	62					0	0	0.000781405	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215081	140215081	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:140215081G>A	uc003lhq.2	+	1	1113	c.1113G>A	c.(1111-1113)TTG>TTA	p.L371L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.L371L	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	371	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCATCACATTGATTAGCGTGT	0.502000													64	78					0	0	0.000781405	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215339	140215339	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:140215339G>A	uc003lhq.2	+	1	1371	c.1371G>A	c.(1369-1371)CAG>CAA	p.Q457Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.Q457Q	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	457	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTTCGCGCAGCCCGAGTATA	0.672000													32	52					0	0	0.000953801	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769605	140769605	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:140769605C>T	uc003lkc.1	+	1	2154	c.2154C>T	c.(2152-2154)AGC>AGT	p.S718S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.S718S	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	718	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCCTCCAGCCCCGCCTCCT	0.572000													72	123					0	0	0.000781405	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140865557	140865557	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:140865557C>T	uc003lky.1	+	1	817	c.817C>T	c.(817-819)CCC>TCC	p.P273S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.P273S	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	273	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCTGGGTCCCAGTGGTAA	0.537000													34	51					0	0	0.000409698	0	0
PCDH12	51294	broad.mit.edu	37	5	141335158	141335158	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:141335158C>T	uc003llx.2	-	1	3470	c.2259G>A	c.(2257-2259)CGG>CGA	p.R753R		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	753	Cytoplasmic (Potential).			R -> W (in Ref. 4; BAB14677).	neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCGGCCTCCCGACAGTTGT	0.582000													20	25					0	0	0.000229342	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040675	147040675	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:147040675C>T	uc003loq.1	-	3	845	c.463G>A	c.(463-465)GAA>AAA	p.E155K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.E113K|JAKMIP2_uc003lor.1_Missense_Mutation_p.E155K|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Missense_Mutation_p.E155K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	155	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCGCAATTTCCTGTAAGAGC	0.552000													58	81					0	0	0.000781405	0	0
LOC134466	134466	broad.mit.edu	37	5	150322208	150322208	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:150322208C>T	uc003lsz.1	-	2	195	c.46G>A	c.(46-48)GAT>AAT	p.D16N	LOC134466_uc003ltb.2_RNA|LOC134466_uc003lta.2_RNA					RecName: Full=Putative KRAB domain-containing protein LOC134466;												0						TGGGTGAAATCCACAGCCACA	0.463000													5	8					0	0	0.000157383	0	0
SLC36A3	285641	broad.mit.edu	37	5	150682882	150682882	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:150682882G>T	uc003ltw.2	-	1	453	c.34C>A	c.(34-36)CTG>ATG	p.L12M	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltx.2_Missense_Mutation_p.L12M	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	12	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAGGAGTTCAGCTCACTGTTG	0.512000													8	81					0.000274275	0.0029775	0.000274275	1	0
GRIA1	2890	broad.mit.edu	37	5	153085397	153085397	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:153085397C>T	uc003lva.3	+	11	1958	c.1593C>T	c.(1591-1593)TTC>TTT	p.F531F	GRIA1_uc003luy.3_Silent_p.F531F|GRIA1_uc003luz.3_Silent_p.F436F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.F451F|GRIA1_uc011dcx.1_Silent_p.F462F|GRIA1_uc011dcy.1_Silent_p.F541F|GRIA1_uc011dcz.1_Silent_p.F541F|GRIA1_uc010jia.1_Silent_p.F511F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	531	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TCTTCTCCTTCCTTGATCCTT	0.433000													49	63					0	0	0.000781405	0	0
CYFIP2	26999	broad.mit.edu	37	5	156747690	156747690	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:156747690C>T	uc003lwq.2	+	17	1689	c.1551C>T	c.(1549-1551)ATC>ATT	p.I517I	CYFIP2_uc011ddn.1_Silent_p.I491I|CYFIP2_uc011ddo.1_Silent_p.I321I|CYFIP2_uc003lwr.2_Silent_p.I517I|CYFIP2_uc003lws.2_Silent_p.I517I|CYFIP2_uc003lwt.2_Silent_p.I395I|CYFIP2_uc011ddp.1_Silent_p.I251I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	517					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAAAGACCATCTGTGACTGGG	0.532000													198	233					0	0	0.000781405	0	0
CLINT1	9685	broad.mit.edu	37	5	157240099	157240099	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:157240099G>A	uc003lxj.1	-	5	679	c.489C>T	c.(487-489)TCC>TCT	p.S163S	CLINT1_uc003lxi.1_Silent_p.S145S|CLINT1_uc011ddv.1_Silent_p.S163S	NM_014666	NP_055481	Q14677	EPN4_HUMAN	epsin 4	163					endocytosis|post-Golgi vesicle-mediated transport	clathrin-coated vesicle|cytosol|Golgi apparatus|membrane|perinuclear region of cytoplasm	clathrin binding|lipid binding			ovary(2)|pancreas(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CACTGTCTGAGGAAACCCCAA	0.413000													38	50					0	0	0.000437636	0	0
SLIT3	6586	broad.mit.edu	37	5	168180945	168180945	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:168180945C>T	uc003mab.2	-	17	2173	c.1753G>A	c.(1753-1755)GAG>AAG	p.E585K	SLIT3_uc010jjg.2_Missense_Mutation_p.E585K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	585	LRR 14.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCATCAGCTCCTGCACGCTG	0.562000													9	14					0	0	0.000274275	0	0
SLIT3	6586	broad.mit.edu	37	5	168250273	168250273	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:168250273G>A	uc003mab.2	-	7	1041	c.621C>T	c.(619-621)ATC>ATT	p.I207I	SLIT3_uc010jjg.2_Silent_p.I207I|SLIT3_uc010jji.2_Silent_p.I207I|SLIT3_uc003mac.1_Silent_p.I4I	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	207					apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACAGAGTTCGGATCTTCGGCA	0.512000													66	86					0	0	0.000781405	0	0
FOXI1	2299	broad.mit.edu	37	5	169532973	169532973	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:169532973C>T	uc003mai.3	+	1	57	c.12C>T	c.(10-12)TTC>TTT	p.F4F	FOXI1_uc003maj.3_Silent_p.F4F	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	4				SSF -> NSG (in Ref. 2; AAB50574).	epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGAGCTCCTTCGACCTGCCGG	0.692000									Pendred_syndrome				12	9					0	0	0.000219431	0	0
RANBP17	64901	broad.mit.edu	37	5	170648799	170648799	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:170648799G>A	uc003mba.2	+	22	2393	c.2377G>A	c.(2377-2379)GGA>AGA	p.G793R	RANBP17_uc003mbb.2_Missense_Mutation_p.G118R|RANBP17_uc003mbd.2_Missense_Mutation_p.G156R|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	793					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ATCTCCTAATGGAATTCTTCT	0.328000			T	TRD@	ALL								33	52					0	0	0.000228196	0	0
UBTD2	92181	broad.mit.edu	37	5	171638918	171638918	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:171638918G>A	uc003mbp.1	-	3	747	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_152277	NP_689490	Q8WUN7	UBTD2_HUMAN	dendritic cell-derived ubiquitin-like protein	207	Ubiquitin-like.					cytoplasm					0	Renal(175;0.000159)|Lung NSC(126;0.00976)|all_lung(126;0.0156)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCAGCTCTTCGAACTTCATTT	0.493000													47	65					0	0	0.000781405	0	0
RPL26L1	51121	broad.mit.edu	37	5	172396539	172396539	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:172396539G>A	uc003mcc.2	+	4	475	c.433G>A	c.(433-435)GAA>AAA	p.E145K		NM_016093	NP_057177	Q9UNX3	RL26L_HUMAN	ribosomal protein L26-like 1	145					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAAAATGCAGGAATAAATAGA	0.388000													13	65					0	0	0.000422831	0	0
FLT4	2324	broad.mit.edu	37	5	180056356	180056356	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:180056356G>A	uc003mma.3	-	7	967	c.888C>T	c.(886-888)ACC>ACT	p.T296T	FLT4_uc003mlz.3_Silent_p.T296T|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Silent_p.T296T|FLT4_uc011dgz.1_Intron	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	296	Ig-like C2-type 3.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CGTTGTGGATGGTCAGGATGC	0.627000									Congenital_Hereditary_Lymphedema				24	26					0	0	0.000878237	0	0
MGAT1	4245	broad.mit.edu	37	5	180219417	180219417	+	Silent	SNP	G	A	A	rs147959494		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr5:180219417G>A	uc003mmg.3	-	2	1050	c.555C>T	c.(553-555)ATC>ATT	p.I185I	MGAT1_uc010jlf.2_Silent_p.I185I|MGAT1_uc010jlg.2_Silent_p.I185I|MGAT1_uc003mmh.3_Silent_p.I185I|MGAT1_uc010jlh.2_Silent_p.I185I|MGAT1_uc003mmi.3_Silent_p.I185I	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	185	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGTGGCGCGCGATCTTGTAGT	0.687000													37	50					0	0	0.000319135	0	0
DUSP22	56940	broad.mit.edu	37	6	348142	348143	+	Missense_Mutation	DNP	AT	GC	GC			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:348142_348143AT>GC	uc003msx.2	+	6	742_743	c.303_304AT>GC	c.(301-306)GCATAC>GCGCAC	p.Y102H	DUSP22_uc011dhn.1_Missense_Mutation_p.Y102H|DUSP22_uc003msy.1_Missense_Mutation_p.Y59H	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	102	Tyrosine-protein phosphatase.				apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		TGGTGATCGCATACATCATGAC	0.609000													33	199					0	0	6.4e-05	0	0
TFAP2A	7020	broad.mit.edu	37	6	10398710	10398711	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:10398710_10398711GG>TT	uc003myr.2	-	7	1505_1506	c.1253_1254CC>AA	c.(1252-1254)CCC>CAA	p.P418Q	TFAP2A_uc003myq.2_Missense_Mutation_p.P412Q|TFAP2A_uc003mys.2_RNA|TFAP2A_uc011dih.1_3'UTR|TFAP2A_uc003myt.2_Missense_Mutation_p.P414Q	NM_003220	NP_003211	P05549	AP2A_HUMAN	transcription factor AP-2 alpha isoform a	418					ectoderm development|positive regulation of bone mineralization|positive regulation of tooth mineralization|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	centrosome|Golgi apparatus|nucleus	chromatin binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.107)				TGTGGCTGTTGGGGTTGTTGCT	0.624000													14	767					0	0	6.4e-05	0	0
ATXN1	6310	broad.mit.edu	37	6	16327906	16327906	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:16327906C>A	uc003nbt.2	-	8	1607	c.636G>T	c.(634-636)CAG>CAT	p.Q212H	ATXN1_uc010jpi.2_Missense_Mutation_p.Q212H|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	212	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				gctgctgctgctgatgctgat	0.383000													4	26					0.00024832	0.00270368	0.00024832	1	0
E2F3	1871	broad.mit.edu	37	6	20486996	20486997	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:20486996_20486997CC>AA	uc003nda.2	+	5	1288_1289	c.961_962CC>AA	c.(961-963)CCT>AAT	p.P321N		NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	321	Dimerization (Potential).				G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			TGTGAAAGCCCCTCCAGAAACA	0.391000													13	616					0	0	6.4e-05	0	0
HIST1H2BC	8347	broad.mit.edu	37	6	26123939	26123939	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:26123939G>A	uc003ngk.3	-	1	216	c.194C>T	c.(193-195)TCT>TTT	p.S65F	HIST1H2BC_uc003ngl.2_Missense_Mutation_p.S65F|HIST1H2AC_uc003ngm.2_5'Flank|HIST1H2AC_uc003ngn.2_5'Flank|HIST1H2AC_uc003ngo.2_5'Flank|HIST1H2AC_uc003ngp.2_5'Flank	NM_003526	NP_003517	P62807	H2B1C_HUMAN	histone cluster 1, H2bc	65					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1						GTTAACGAAAGAATTCATGAT	0.562000													54	191					0	0	0.000781405	0	0
BTN3A1	11119	broad.mit.edu	37	6	26413833	26413833	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:26413833C>T	uc003nhv.2	+	10	1823	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F	BTN3A1_uc011dkj.1_3'UTR|BTN3A1_uc011dkk.1_Silent_p.F433F|BTN3A1_uc010jqj.2_3'UTR	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	485	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TTCATACTTTCCTGGACGTCT	0.463000													44	150					0	0	0.000781405	0	0
OR2B2	81697	broad.mit.edu	37	6	27879792	27879792	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:27879792G>A	uc011dkw.1	-	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCAGGAAAATGAAAAGCTGGG	0.448000													59	28					0	0	0.000781405	0	0
PGBD1	84547	broad.mit.edu	37	6	28268649	28268649	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:28268649C>T	uc003nky.2	+	7	1388	c.1018C>T	c.(1018-1020)CGA>TGA	p.R340*	PGBD1_uc003nkz.2_Nonsense_Mutation_p.R340*	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	340					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						AGACATTACCCGAAAAGGGAG	0.483000													85	26					0	0	0.000781405	0	0
ZNF323	64288	broad.mit.edu	37	6	28294030	28294031	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:28294030_28294031GG>TT	uc003nla.2	-	4	1533_1534	c.1133_1134CC>AA	c.(1132-1134)CCC>CAA	p.P378Q	ZNF323_uc003nld.2_Missense_Mutation_p.P378Q|ZNF323_uc010jra.2_Missense_Mutation_p.P378Q|ZNF323_uc003nlb.2_Missense_Mutation_p.P219Q|ZNF323_uc010jrb.2_Missense_Mutation_p.P219Q|ZNF323_uc003nlc.2_Missense_Mutation_p.P378Q	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	378					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGCACTGATAGGGTTTCTCACC	0.470000													11	340					0	0	6.4e-05	0	0
MOG	4340	broad.mit.edu	37	6	29638086	29638086	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:29638086G>A	uc003nnf.2	+	6	799	c.621G>A	c.(619-621)TGG>TGA	p.W207*	MOG_uc003nmy.1_Nonsense_Mutation_p.W207*|MOG_uc003nmz.2_3'UTR|MOG_uc011dlt.1_Nonsense_Mutation_p.W137*|MOG_uc003nna.2_Nonsense_Mutation_p.W91*|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_3'UTR|MOG_uc003nne.2_Nonsense_Mutation_p.W207*|MOG_uc003nng.2_Intron|MOG_uc003nnh.2_Intron|MOG_uc003nni.2_Intron|MOG_uc003nnj.2_Intron|MOG_uc003nnk.2_Intron	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	207	Cytoplasmic (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						TGCCCTGCTGGAAGATAACCC	0.507000													67	180					0	0	0.000781405	0	0
BAT3	7917	broad.mit.edu	37	6	31612966	31612967	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31612966_31612967CC>AA	uc003nvg.3	-	10	1457_1458	c.1143_1144GG>TT	c.(1141-1146)GTGGGA>GTTTGA	p.G382*	BAT3_uc003nvf.3_Nonsense_Mutation_p.G376*|BAT3_uc003nvh.3_Nonsense_Mutation_p.G376*|BAT3_uc003nvi.3_Nonsense_Mutation_p.G376*|BAT3_uc011dnw.1_Nonsense_Mutation_p.G376*|BAT3_uc011dnx.1_Nonsense_Mutation_p.G376*|BAT3_uc003nvj.1_Nonsense_Mutation_p.G376*	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	382	4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						ACAGTGGTTCCCACATTGATCT	0.525000													16	585					0	0	6.4e-05	0	0
BAT3	7917	broad.mit.edu	37	6	31615482	31615483	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31615482_31615483CG>AT	uc003nvg.3	-	7	1005_1006	c.691_692CG>AT	c.(691-693)CGG>ATG	p.R231M	BAT3_uc003nvf.3_Missense_Mutation_p.R225M|BAT3_uc003nvh.3_Missense_Mutation_p.R225M|BAT3_uc003nvi.3_Missense_Mutation_p.R225M|BAT3_uc011dnw.1_Missense_Mutation_p.R225M|BAT3_uc011dnx.1_Missense_Mutation_p.R225M|BAT3_uc003nvj.1_Missense_Mutation_p.R225M	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	231	Pro-rich.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						CATGGGCTCCCGGGGAGGTGCT	0.663000													18	663					0	0	6.4e-05	0	0
LY6G5C	80741	broad.mit.edu	37	6	31644829	31644830	+	Silent	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31644829_31644830GG>TT	uc003nvu.1	-	3	348_349	c.348_349CC>AA	c.(346-351)ACCCGA>ACAAGA	p.116_117TR>TR	LY6G5C_uc003nvw.1_RNA|LY6G5C_uc010jtb.1_RNA	NM_025262	NP_079538	Q5SRR4	LY65C_HUMAN	lymphocyte antigen 6 complex G5C	119_120	UPAR/Ly6.					extracellular region					0						GGAGAAGTTCGGGTATTTGAAC	0.505000													12	666					0	0	6.4e-05	0	0
HSPA1L	3305	broad.mit.edu	37	6	31777930	31777931	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31777930_31777931GG>TT	uc003nxh.2	-	2	2002_2003	c.1819_1820CC>AA	c.(1819-1821)CCT>AAT	p.P607N	HSPA1L_uc010jte.2_Missense_Mutation_p.P607N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	607					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTGATGATAGGGTTACACATC	0.495000													18	920					0	0	6.4e-05	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778435	31778436	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31778435_31778436CG>AT	uc003nxh.2	-	2	1497_1498	c.1314_1315CG>AT	c.(1312-1317)CCCGGG>CCATGG	p.G439W	HSPA1L_uc010jte.2_Missense_Mutation_p.G439W	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	439					response to unfolded protein		ATP binding	p.P438P(1)		ovary(3)|pleura(1)|kidney(1)|skin(1)	6						ATCAGCACCCCGGGTTGGTTGT	0.589000													12	731					0	0	6.4e-05	0	0
CFB	629	broad.mit.edu	37	6	31914897	31914898	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31914897_31914898CG>AT	uc003nyj.3	+	3	690_691	c.412_413CG>AT	c.(412-414)CGG>ATG	p.R138M	CFB_uc011dor.1_Missense_Mutation_p.R640M|CFB_uc011dos.1_3'UTR|CFB_uc003nyi.2_Missense_Mutation_p.R138M	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	138	Sushi 2.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TTACACTCTCCGGGGCTCTGCC	0.559000													9	512					0	0	6.4e-05	0	0
CFB	629	broad.mit.edu	37	6	31918923	31918923	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:31918923G>A	uc003nyj.3	+	15	2136	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	CFB_uc011dor.1_Missense_Mutation_p.E1122K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	620	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCGTCCAGAGGAAGAGCTGCT	0.507000													244	112					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32010368	32010368	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:32010368G>A	uc003nzl.2	-	40	12270	c.12068C>T	c.(12067-12069)CCC>CTC	p.P4023L	TNXB_uc003nzg.1_Missense_Mutation_p.P454L|TNXB_uc003nzh.1_Missense_Mutation_p.P492L	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	4070	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTGGGGAAGGGGATCCGCAG	0.701000													74	208					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32036656	32036657	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:32036656_32036657GG>TT	uc003nzl.2	-	16	6046_6047	c.5844_5845CC>AA	c.(5842-5847)ACCCTG>ACAATG	p.L1949M		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2031	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AAACCATACAGGGTCACCAGGT	0.550000													14	747					0	0	6.4e-05	0	0
FKBPL	63943	broad.mit.edu	37	6	32097440	32097441	+	Silent	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:32097440_32097441GG>TT	uc003nzr.2	-	2	387_388	c.117_118CC>AA	c.(115-120)CCCCGA>CCAAGA	p.39_40PR>PR	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	39_40					response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						GGAGGGTCTCGGGGCTGCTGCC	0.485000													15	877					0	0	6.4e-05	0	0
PPT2	9374	broad.mit.edu	37	6	32130605	32130606	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:32130605_32130606GG>TT	uc003nzx.2	+	9	1355_1356	c.787_788GG>TT	c.(787-789)GGG>TTG	p.G263L	PPT2_uc003nzw.2_Missense_Mutation_p.G269L|PPT2_uc011dpi.1_Intron|PPT2_uc003nzy.1_Intron|PPT2_uc003nzz.2_Missense_Mutation_p.G263L|PPT2_uc003oaa.2_Missense_Mutation_p.G263L|PPT2_uc010jtu.1_Intron|EGFL8_uc003oac.1_5'Flank|EGFL8_uc003oab.1_5'Flank	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	263					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						GGATTCTTTTGGGTTGAAGACT	0.545000													16	879					0	0	6.4e-05	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713773	32713773	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:32713773C>T	uc003obx.2	+	3	595	c.537C>T	c.(535-537)TTC>TTT	p.F179F		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	179	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACCTCACCTTCCTCCCTTCTG	0.512000													50	203					0	0	0.000781405	0	0
ITPR3	3710	broad.mit.edu	37	6	33652562	33652562	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:33652562G>A	uc011drk.1	+	39	5368	c.5149G>A	c.(5149-5151)GAC>AAC	p.D1717N	ITPR3_uc003oey.2_5'Flank	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1717	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						CCTGGACCCAGACTGGTCGGC	0.627000													41	111					0	0	0.000589545	0	0
PACSIN1	29993	broad.mit.edu	37	6	34499545	34499545	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:34499545C>T	uc003ojo.2	+	9	1412	c.1206C>T	c.(1204-1206)GAC>GAT	p.D402D	PACSIN1_uc003ojp.2_Silent_p.D402D	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	402	SH3.				endocytosis		protein kinase activity				0						AGGAGCAGGACGAGCTCAGCT	0.662000													38	137					0	0	0.000374591	0	0
SRPK1	6732	broad.mit.edu	37	6	35803137	35803137	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:35803137G>A	uc003olj.2	-	16	2035	c.1912C>T	c.(1912-1914)CCT>TCT	p.P638S	SRPK1_uc011dtg.1_Missense_Mutation_p.P622S|SRPK1_uc003olh.2_Missense_Mutation_p.P531S|SRPK1_uc003oli.2_Missense_Mutation_p.P531S	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1	638	Protein kinase.				cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						CTCTTCTCAGGGATCAGCTCC	0.567000													11	52					0	0	6.40141e-05	0	0
DNAH8	1769	broad.mit.edu	37	6	38834374	38834374	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:38834374G>A	uc003ooe.1	+	44	6455	c.5855G>A	c.(5854-5856)GGA>GAA	p.G1952E		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAGAACCCTGGATATGCTGGG	0.318000													20	59					0	0	0.000132079	0	0
GUCA1B	2979	broad.mit.edu	37	6	42152631	42152631	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:42152631C>T	uc003orz.2	-	4	661	c.525G>A	c.(523-525)TGG>TGA	p.W175*		NM_002098	NP_002089	Q9UMX6	GUC1B_HUMAN	guanylate cyclase activator 1B (retina)	175	EF-hand 4.				body fluid secretion|cell-cell signaling|receptor guanylyl cyclase signaling pathway|visual perception	plasma membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity			skin(2)	2	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00154)|STAD - Stomach adenocarcinoma(11;0.00177)			TCTTCATCACCCACTTGTCCC	0.577000													48	76					0	0	0.000781405	0	0
ZNF318	24149	broad.mit.edu	37	6	43308005	43308006	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:43308005_43308006GG>TT	uc003oux.2	-	10	3808_3809	c.3730_3731CC>AA	c.(3730-3732)CCT>AAT	p.P1244N	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1244	Lys-rich.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			AGCTTTTTCAGGGGAGTTCCTA	0.401000													9	300					0	0	6.4e-05	0	0
RUNX2	860	broad.mit.edu	37	6	45459784	45459784	+	Silent	SNP	G	A	A	rs12173874		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:45459784G>A	uc011dvx.1	+	6	1002	c.792G>A	c.(790-792)CAG>CAA	p.Q264Q	RUNX2_uc011dvy.1_Silent_p.Q264Q|RUNX2_uc003oxt.2_Silent_p.Q250Q	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	264	Pro/Ser/Thr-rich.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						TCCCGCCTCAGAACCCACGGC	0.488000													64	36					0	0	0.000781405	0	0
MEP1A	4224	broad.mit.edu	37	6	46803091	46803091	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:46803091C>T	uc010jzh.1	+	13	1931	c.1889C>T	c.(1888-1890)TCG>TTG	p.S630L	MEP1A_uc011dwg.1_Missense_Mutation_p.S352L|MEP1A_uc011dwh.1_Missense_Mutation_p.S658L|MEP1A_uc011dwi.1_Missense_Mutation_p.S530L	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	630	Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GAAGAAGGTTCGGGAAAGGCC	0.607000													12	24					0	0	0.00010058	0	0
CRISP3	10321	broad.mit.edu	37	6	49705064	49705064	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:49705064G>A	uc003ozs.2	-	2	61	c.46C>T	c.(46-48)CCA>TCA	p.P16S		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	16					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			GGAAAAGATGGAAGCAGCCCA	0.418000													8	63					0	0	0.000673444	0	0
FAM83B	222584	broad.mit.edu	37	6	54806270	54806270	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:54806270C>T	uc003pck.2	+	5	2617	c.2501C>T	c.(2500-2502)TCC>TTC	p.S834F		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	834	Poly-Ser.									ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AAGCATTCTTCCTCATCGAAT	0.378000													7	16					0	0	0.000442599	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904447	73904447	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:73904447C>T	uc003pgk.2	+	14	2456	c.2109C>T	c.(2107-2109)TAC>TAT	p.Y703Y	KCNQ5_uc011dyh.1_Silent_p.Y722Y|KCNQ5_uc011dyi.1_Silent_p.Y713Y|KCNQ5_uc010kat.2_Silent_p.Y694Y|KCNQ5_uc011dyj.1_Silent_p.Y593Y|KCNQ5_uc011dyk.1_Silent_p.Y453Y	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	703					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		AGACTTTCTACGCGCTTAGCC	0.493000													48	59					0	0	0.000781405	0	0
TBX18	9096	broad.mit.edu	37	6	85466540	85466540	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:85466540G>A	uc003pkl.1	-	4	647	c.647C>T	c.(646-648)TCG>TTG	p.S216L	TBX18_uc010kbq.1_Missense_Mutation_p.S58L	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	216	T-box.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		TGGCACAGGCGAGTCAGCATT	0.502000													10	22					0	0	0.000442599	0	0
EPHA7	2045	broad.mit.edu	37	6	93956640	93956640	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:93956640G>A	uc003poe.2	-	15	2837	c.2596C>T	c.(2596-2598)CAC>TAC	p.H866Y	EPHA7_uc003pof.2_Missense_Mutation_p.H861Y|EPHA7_uc011eac.1_Missense_Mutation_p.H862Y	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	866	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		ATTAGCTGGTGAAGGCCAGCT	0.393000													18	29					0	0	0.000958276	0	0
AIM1	202	broad.mit.edu	37	6	107001438	107001438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:107001438G>A	uc003prh.2	+	14	4844	c.4357G>A	c.(4357-4359)GGC>AGC	p.G1453S	AIM1_uc003pri.2_Missense_Mutation_p.G257S	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1453	Beta/gamma crystallin 'Greek key' 10.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		AGTTTCAGGAGGCAGGTAAGT	0.408000													17	20					0	0	0.00074312	0	0
THEMIS	387357	broad.mit.edu	37	6	128134390	128134390	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:128134390G>A	uc003qbi.2	-	5	1715	c.1396C>T	c.(1396-1398)CTT>TTT	p.L466F	THEMIS_uc010kfa.2_Missense_Mutation_p.L369F|THEMIS_uc011ebt.1_Missense_Mutation_p.L466F|THEMIS_uc010kfb.2_Missense_Mutation_p.L431F	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	466	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCAATGGAAAGATCCCTGACA	0.468000													17	22					0	0	0.000422831	0	0
TAAR8	83551	broad.mit.edu	37	6	132874708	132874708	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:132874708G>A	uc011ecj.1	+	1	877	c.877G>A	c.(877-879)GAA>AAA	p.E293K		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	293	Helical; Name=7; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		CTATATCTATGAAATTTGCTG	0.363000													66	67					0	0	0.000781405	0	0
EYA4	2070	broad.mit.edu	37	6	133789765	133789765	+	Missense_Mutation	SNP	C	T	T	rs41286200	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:133789765C>T	uc003qec.3	+	11	1324	c.866C>T	c.(865-867)ACG>ATG	p.T289M	EYA4_uc011ecq.1_Missense_Mutation_p.T235M|EYA4_uc011ecr.1_Missense_Mutation_p.T235M|EYA4_uc003qed.3_Missense_Mutation_p.T289M|EYA4_uc003qee.3_Missense_Mutation_p.T266M|EYA4_uc011ecs.1_Missense_Mutation_p.T289M|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	289					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TCAGCATCAACGTATGGAGCG	0.418000													10	13					0	0	0.000673444	0	0
SLC22A3	6581	broad.mit.edu	37	6	160829803	160829803	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:160829803C>T	uc003qti.2	+	4	734	c.707C>T	c.(706-708)TCG>TTG	p.S236L	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	236						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		ATAGTAGGTTCGAAACAAAGG	0.403000													8	12					0	0	0.000442599	0	0
LPA	4018	broad.mit.edu	37	6	161071500	161071500	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:161071500C>T	uc003qtl.2	-	3	199	c.79G>A	c.(79-81)GAT>AAT	p.D27N		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGTAGCAATCCTGGACCACA	0.433000													44	65					0	0	0.000589545	0	0
UNC93A	54346	broad.mit.edu	37	6	167711438	167711438	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr6:167711438C>T	uc003qvq.2	+	4	680	c.505C>T	c.(505-507)CTT>TTT	p.L169F	UNC93A_uc003qvr.2_Intron	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	169						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CATAGAGACCCTTCCAGAAGA	0.532000													33	47					0	0	0.000692331	0	0
TMEM184A	202915	broad.mit.edu	37	7	1586593	1586593	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:1586593G>A	uc003skv.3	-	9	1554	c.1237C>T	c.(1237-1239)CTG>TTG	p.L413L	TMEM184A_uc003skt.3_Silent_p.L392L|TMEM184A_uc003skw.3_Silent_p.L218L	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	413						integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		CCCCCCTACAGGTCCTCCGAG	0.716000													9	11					0	0	0.000673444	0	0
RNF216	54476	broad.mit.edu	37	7	5663738	5663738	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:5663738T>C	uc003soy.1	-	16	2420	c.2230A>G	c.(2230-2232)ATT>GTT	p.I744V	RNF216_uc010ksz.1_Missense_Mutation_p.I366V|RNF216_uc010kta.1_Missense_Mutation_p.I366V|RNF216_uc011jwj.1_Missense_Mutation_p.I366V|RNF216_uc003sox.1_Missense_Mutation_p.I801V	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	744	Potential.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		ATTTCCTCAATAAGCTTCTCA	0.542000													3	43					0	0	6.4e-05	0	0
COL28A1	340267	broad.mit.edu	37	7	7516792	7516792	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:7516792C>T	uc003src.1	-	14	1301	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E	COL28A1_uc011jxe.1_Missense_Mutation_p.G78E|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	395	Collagen-like 3.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TCCTGGTACTCCCTCAGGACC	0.333000													27	36					0	0	0.000227799	0	0
DNAH11	8701	broad.mit.edu	37	7	21906245	21906245	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:21906245G>T	uc003svc.2	+	72	11706	c.11675G>T	c.(11674-11676)AGA>ATA	p.R3892I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3892					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ATTCTTCTGAGAGCAATGCGC	0.413000									Kartagener_syndrome				31	40					9.04072e-19	1.00058e-17	0.00058488	1	0
DNAH11	8701	broad.mit.edu	37	7	21920343	21920343	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:21920343G>A	uc003svc.2	+	76	12271	c.12240G>A	c.(12238-12240)AAG>AAA	p.K4080K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4080	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TATGCTCCAAGGAGCAGGAGT	0.463000									Kartagener_syndrome				56	86					0	0	0.000781405	0	0
NFE2L3	9603	broad.mit.edu	37	7	26225170	26225170	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:26225170G>A	uc003sxq.2	+	4	2124	c.1852G>A	c.(1852-1854)GAA>AAA	p.E618K		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	618	Leucine-zipper.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						AGCAAAGAAGGAAACTCTTAA	0.328000													13	23					0	0	0.00010058	0	0
INMT	11185	broad.mit.edu	37	7	30795310	30795310	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:30795310C>T	uc003tbs.1	+	3	651	c.635C>T	c.(634-636)TCC>TTC	p.S212F	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.S211F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	212						cytoplasm	amine N-methyltransferase activity				0						CGTGAATTTTCCTGCGTGGCC	0.597000													23	16					0	0	0.000375601	0	0
YKT6	10652	broad.mit.edu	37	7	44247782	44247782	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:44247782G>A	uc003tkm.2	+	5	601	c.444G>A	c.(442-444)GAG>GAA	p.E148E	YKT6_uc011kbv.1_Silent_p.E148E	NM_006555	NP_006546	O15498	YKT6_HUMAN	YKT6 v-SNARE protein	148	v-SNARE coiled-coil homology.				ER to Golgi vesicle-mediated transport|protein transport|retrograde transport, endosome to Golgi|vesicle docking involved in exocytosis|vesicle targeting	cytoplasmic vesicle membrane|cytosol|endoplasmic reticulum|endosome|Golgi membrane|integral to plasma membrane|mitochondrion|SNARE complex	protein-cysteine S-palmitoleyltransferase activity|SNAP receptor activity				0						AACTAGATGAGACCAAAATCA	0.502000													9	20					0	0	0.000442599	0	0
ADCY1	107	broad.mit.edu	37	7	45632490	45632490	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:45632490G>A	uc003tne.3	+	2	790	c.772G>A	c.(772-774)GAT>AAT	p.D258N	ADCY1_uc003tnd.2_Missense_Mutation_p.D33N	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	258	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GAGGCTGGAGGATGAGAACGA	0.592000													24	25					0	0	0.000295444	0	0
POM121L12	285877	broad.mit.edu	37	7	53103445	53103445	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:53103445C>G	uc003tpz.2	+	1	97	c.81C>G	c.(79-81)GAC>GAG	p.D27E		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	27											0						AAGGCCCCGACGCCCTGGCGG	0.701000													15	16					0	0	0.000219431	0	0
LOC643955	643955	broad.mit.edu	37	7	62758710	62758710	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:62758710C>T	uc011kdj.1	-	2	168	c.100G>A	c.(100-102)GAT>AAT	p.D34N		NR_003952				Homo sapiens cDNA clone IMAGE:30377995, containing frame-shift errors.												0						TGAGCACAATCCAGGCATTGC	0.393000													14	19					0	0	0.000422831	0	0
ASL	435	broad.mit.edu	37	7	65553802	65553802	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:65553802C>T	uc003tuo.2	+	11	838	c.727C>T	c.(727-729)CTG>TTG	p.L243L	ASL_uc003tup.2_Silent_p.L243L|ASL_uc003tur.2_Silent_p.L217L|ASL_uc003tuq.2_Silent_p.L243L	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	243					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	AGCCGAGTTCCTGTTCTGGGC	0.602000													13	2					0	0	0.000219431	0	0
ABCB1	5243	broad.mit.edu	37	7	87180059	87180059	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:87180059G>A	uc003uiz.1	-	11	1513	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I	ABCB1_uc011khc.1_Silent_p.I301I	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	365	Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTATCTTGAAGATTTCATAAG	0.378000													23	11					0	0	0.000295444	0	0
SAMD9	54809	broad.mit.edu	37	7	92732356	92732356	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:92732356C>T	uc003umf.2	-	3	3311	c.3055G>A	c.(3055-3057)GAT>AAT	p.D1019N	SAMD9_uc003umg.2_Missense_Mutation_p.D1019N	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1019						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ATACCAGTATCGAAGAACAAA	0.368000													24	17					0	0	0.00047179	0	0
TRRAP	8295	broad.mit.edu	37	7	98554098	98554098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:98554098C>T	uc003upp.2	+	42	6361	c.6152C>T	c.(6151-6153)TCC>TTC	p.S2051F	TRRAP_uc011kis.1_Missense_Mutation_p.S2033F|TRRAP_uc003upr.2_Missense_Mutation_p.S1750F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2051	Interaction with TP53.|Bipartite nuclear localization signal (Potential).				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AGAGGCCTGTCCGTGGATTCT	0.517000													30	13					0	0	0.000339439	0	0
FBXO24	26261	broad.mit.edu	37	7	100192071	100192071	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:100192071G>A	uc003uvm.1	+	6	1152	c.859G>A	c.(859-861)GTT>ATT	p.V287I	FBXO24_uc003uvl.1_Missense_Mutation_p.V273I|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Missense_Mutation_p.V325I|FBXO24_uc011kka.1_Missense_Mutation_p.V275I	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	287						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTCCTACACGGTTCAGCTGGC	0.572000													24	12					0	0	0.000878237	0	0
ZAN	7455	broad.mit.edu	37	7	100350305	100350305	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:100350305C>T	uc003uwj.2	+	14	2742	c.2577C>T	c.(2575-2577)ATC>ATT	p.I859I	ZAN_uc003uwk.2_Silent_p.I859I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	859	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACCCACCATCCCCACAGAAA	0.488000													34	10					0	0	0.000409698	0	0
EPHB4	2050	broad.mit.edu	37	7	100403198	100403198	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:100403198G>A	uc003uwn.1	-	15	3094	c.2603C>T	c.(2602-2604)CCC>CTC	p.P868L	EPHB4_uc003uwm.1_Missense_Mutation_p.P775L|EPHB4_uc010lhj.1_Missense_Mutation_p.P868L	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	868	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					GACCACCTGGGGGAAGCGGGG	0.662000													12	74					0	0	0.000151284	0	0
MUC17	140453	broad.mit.edu	37	7	100682579	100682579	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:100682579C>T	uc003uxp.1	+	3	7935	c.7882C>T	c.(7882-7884)CCT>TCT	p.P2628S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2628	Extracellular (Potential).|59 X approximate tandem repeats.|42.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AATCTCAACTCCTAGTGAAGT	0.453000													29	130					0	0	0.000147802	0	0
CFTR	1080	broad.mit.edu	37	7	117175331	117175331	+	Silent	SNP	C	T	T	rs1800081		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:117175331C>T	uc003vjd.2	+	6	741	c.609C>T	c.(607-609)ATC>ATT	p.I203I	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	203	Helical; Name=3; (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TCGTGTGGATCGCTCCTTTGC	0.458000									Cystic_Fibrosis				58	45					0	0	0.000781405	0	0
CFTR	1080	broad.mit.edu	37	7	117243649	117243649	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:117243649C>T	uc003vjd.2	+	17	2853	c.2721C>T	c.(2719-2721)ATC>ATT	p.I907I	CFTR_uc011knq.1_Silent_p.I313I	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	907	ABC transmembrane type-1 2.|Extracellular (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CAGTGATTATCACCAGCACCA	0.418000									Cystic_Fibrosis				7	20					0	0	0.000157383	0	0
SLC13A1	6561	broad.mit.edu	37	7	122769450	122769450	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:122769450G>A	uc003vkm.2	-	9	1043	c.1018C>T	c.(1018-1020)CTT>TTT	p.L340F	SLC13A1_uc010lks.2_Missense_Mutation_p.L216F	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	340						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	ATTGGCCCAAGCTTTTGGTAT	0.279000													30	10					0	0	0.000339439	0	0
IQUB	154865	broad.mit.edu	37	7	123104989	123104989	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:123104989G>A	uc003vkn.2	-	10	2233	c.1656C>T	c.(1654-1656)GTC>GTT	p.V552V	IQUB_uc003vko.2_Silent_p.V552V|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Silent_p.V552V	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	552										ovary(3)|large_intestine(1)	4						TATGATGTTTGACTCCTCTCA	0.323000													19	144					0	0	0.000295444	0	0
GPR37	2861	broad.mit.edu	37	7	124386989	124386989	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:124386989G>A	uc003vli.2	-	2	2083	c.1432C>T	c.(1432-1434)CGA>TGA	p.R478*		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	478	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						TTATTCCCTCGGGTACAGGCT	0.433000													16	31					0	0	0.000566183	0	0
GCC1	79571	broad.mit.edu	37	7	127222106	127222106	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:127222106G>A	uc003vma.2	-	2	2708	c.2290C>T	c.(2290-2292)CCA>TCA	p.P764S		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	764						Golgi membrane|plasma membrane	protein binding			ovary(2)	2						GCACTGGTTGGGAGTCGCATT	0.517000													120	31					0	0	0.000781405	0	0
TSGA14	95681	broad.mit.edu	37	7	130039942	130039943	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:130039942_130039943GG>TT	uc003vpz.2	-	10	957_958	c.910_911CC>AA	c.(910-912)CCA>AAA	p.P304K	TSGA14_uc003vpy.2_Missense_Mutation_p.P66K|TSGA14_uc010lmf.2_Missense_Mutation_p.P101K|TSGA14_uc003vqa.2_Intron|TSGA14_uc011kpg.1_Intron	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	304					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					TAAGTCTTCTGGGGTAAATCTC	0.475000													14	659					0	0	6.4e-05	0	0
COPG2	26958	broad.mit.edu	37	7	130147529	130147529	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:130147529C>T	uc003vqh.1	-	12	2473	c.2383G>A	c.(2383-2385)GAA>AAA	p.E795K		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	795					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					GTCTCACCTTCAAGGGTTTTG	0.398000													24	252					0	0	0.000295444	0	0
TRIM24	8805	broad.mit.edu	37	7	138239559	138239559	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:138239559C>T	uc003vuc.2	+	9	1593	c.1378C>T	c.(1378-1380)CCA>TCA	p.P460S	TRIM24_uc003vub.2_Missense_Mutation_p.P460S	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	460					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						ATCCAAGTTCCCAACACAGAT	0.498000													7	100					0	0	8.12818e-05	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138764804	138764804	+	Missense_Mutation	SNP	G	C	C	rs149863045	byFrequency	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:138764804G>C	uc003vun.2	-	4	1271	c.883C>G	c.(883-885)CGC>GGC	p.R295G	ZC3HAV1_uc003vuo.2_5'Flank|ZC3HAV1_uc003vup.2_Missense_Mutation_p.R295G	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	295					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						GTGAACTTGCGGGTGAGATCG	0.607000													4	143					0	0	0.00024832	0	0
PARP12	64761	broad.mit.edu	37	7	139724492	139724492	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:139724492G>A	uc003vvl.1	-	12	2848	c.1974C>T	c.(1972-1974)CCC>CCT	p.P658P	PARP12_uc003vvk.1_Silent_p.P444P|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	658	PARP catalytic.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					CAAAGATGGAGGGGTCGGACA	0.577000													92	26					0	0	0.000781405	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	CT	CT	rs121913378		TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:140453136_140453137AC>CT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AG	c.(1798-1800)GTG>AGG	p.V600R		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				62	11					0	0	6.4e-05	0	0
EPHB6	2051	broad.mit.edu	37	7	142566077	142566077	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:142566077A>G	uc011kst.1	+	14	2784	c.1997A>G	c.(1996-1998)GAT>GGT	p.D666G	EPHB6_uc011ksu.1_Missense_Mutation_p.D666G|EPHB6_uc003wbs.2_Missense_Mutation_p.D374G|EPHB6_uc003wbt.2_Missense_Mutation_p.D140G|EPHB6_uc003wbu.2_Missense_Mutation_p.D374G|EPHB6_uc003wbv.2_Missense_Mutation_p.D50G	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	666	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CGGGAAGTCGATCCTGCTTAT	0.592000													7	49					0	0	0.000157383	0	0
CLCN1	1180	broad.mit.edu	37	7	143028681	143028681	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:143028681C>A	uc003wcr.1	+	10	1189	c.1102C>A	c.(1102-1104)CTG>ATG	p.L368M	CLCN1_uc011ktc.1_Missense_Mutation_p.L30M	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	368	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					ATTTGTGTATCTGCATCGCCA	0.473000													99	18					8.2126e-72	9.13033e-71	0.000781405	1	0
OR2A5	393046	broad.mit.edu	37	7	143748394	143748394	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:143748394C>T	uc011ktw.1	+	1	900	c.900C>T	c.(898-900)GCC>GCT	p.A300A		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TCAAGGGTGCCCTGAAAAGAG	0.493000													5	77					0	0	0.000157383	0	0
CUL1	8454	broad.mit.edu	37	7	148486870	148486871	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:148486870_148486871CG>AT	uc010lpg.2	+	15	2152_2153	c.1626_1627CG>AT	c.(1624-1629)TCCGGG>TCATGG	p.G543W	CUL1_uc003wey.2_Missense_Mutation_p.G543W|CUL1_uc003wez.2_Missense_Mutation_p.G433W|CUL1_uc003wfa.2_Missense_Mutation_p.G204W	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	543					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			TGCTGAGCTCCGGGTCCTGGCC	0.480000													6	153					0	0	6.4e-05	0	0
C7orf29	113763	broad.mit.edu	37	7	150027560	150027560	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:150027560C>T	uc003wgy.2	+	1	623	c.67C>T	c.(67-69)CTG>TTG	p.L23L	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	23										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			GCTGCGCTACCTGCACATCTT	0.647000													64	28					0	0	0.000781405	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217787	150217787	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:150217787C>T	uc003whk.2	+	2	855	c.725C>T	c.(724-726)TCA>TTA	p.S242L		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	242							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGCATAAATCAGAGGAAGAA	0.269000													35	13					0	0	0.000491102	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269319	150269319	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:150269319A>T	uc003whl.2	+	3	243	c.161A>T	c.(160-162)AAA>ATA	p.K54I	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Missense_Mutation_p.K68I	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	54							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTTGGCCGGAAAGTGTTTCAT	0.468000													19	12					0	0	0.000132079	0	0
MLL3	58508	broad.mit.edu	37	7	151900066	151900066	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr7:151900066G>A	uc003wla.2	-	26	4264	c.4045C>T	c.(4045-4047)CGA>TGA	p.R1349*	MLL3_uc003wkz.2_Nonsense_Mutation_p.R410*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1349	Potential.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TTCCTTTTTCGGTATCTCTTC	0.318000			N		medulloblastoma								9	34					0	0	0.000274275	0	0
CSMD1	64478	broad.mit.edu	37	8	3047478	3047478	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:3047478G>A	uc011kwk.1	-	34	5747	c.5357C>T	c.(5356-5358)CCC>CTC	p.P1786L	CSMD1_uc011kwj.1_Missense_Mutation_p.P1178L|CSMD1_uc003wqe.2_Missense_Mutation_p.P942L|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1786	Sushi 10.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAAGGCGTTGGGCACGGACTG	0.602000													4	1					0	0	0.000602214	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998636	8998636	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:8998636G>A	uc003wsn.3	-	2	691	c.526C>T	c.(526-528)CCT>TCT	p.P176S	PPP1R3B_uc003wso.3_Missense_Mutation_p.P175S	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	176	CBM21.				glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		TACTGACAAGGAAAGTCTGTG	0.483000													77	81					0	0	0.000781405	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998818	8998818	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:8998818G>A	uc003wsn.3	-	2	509	c.344C>T	c.(343-345)TCC>TTC	p.S115F	PPP1R3B_uc003wso.3_Missense_Mutation_p.S114F	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	115					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		AGAGGGCTGGGAAAAATCCAG	0.498000													41	46					0	0	0.000228196	0	0
XKR6	286046	broad.mit.edu	37	8	10756350	10756350	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:10756350C>T	uc003wtk.1	-	3	1065	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	346						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TCTTGTCGTCCCTGGAGTCCC	0.557000													55	50					0	0	0.000781405	0	0
CTSB	1508	broad.mit.edu	37	8	11710136	11710136	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:11710136C>T	uc003wum.2	-	5	519	c.195G>A	c.(193-195)GGG>GGA	p.G65G	CTSB_uc011kxl.1_Intron|CTSB_uc003wun.2_Silent_p.G65G|CTSB_uc003wuo.2_Silent_p.G65G|CTSB_uc003wup.2_Silent_p.G65G|CTSB_uc003wuq.2_Silent_p.G65G|CTSB_uc010lsc.2_5'UTR|CTSB_uc003wur.2_Silent_p.G65G|CTSB_uc003wus.1_Silent_p.G65G|CTSB_uc003wut.1_Silent_p.G65G|CTSB_uc003wuu.2_5'Flank	NM_147780	NP_680090	P07858	CATB_HUMAN	cathepsin B preproprotein	65					proteolysis|regulation of apoptosis|regulation of catalytic activity	lysosome|melanosome	cysteine-type endopeptidase activity				0	all_epithelial(15;0.205)		STAD - Stomach adenocarcinoma(15;0.00546)	COAD - Colon adenocarcinoma(149;0.184)		GTGGCTTGGGCCCACCCAGGA	0.587000													11	20					0	0	0.00010058	0	0
DOK2	9046	broad.mit.edu	37	8	21771103	21771103	+	Missense_Mutation	SNP	C	A	A	rs149394218	byFrequency	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:21771103C>A	uc003wzy.1	-	1	103	c.10G>T	c.(10-12)GGG>TGG	p.G4W	DOK2_uc003wzx.1_Missense_Mutation_p.G4W|DOK2_uc003wzz.1_5'UTR|DOK2_uc010lth.1_5'UTR	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	4	PH.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		TTCACTGCCCCGTCTCCCATC	0.587000													6	83					0.000274275	0.0029775	0.000274275	1	0
NEFL	4747	broad.mit.edu	37	8	24811711	24811711	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:24811711C>T	uc003xee.2	-	2	1255	c.1153G>A	c.(1153-1155)GAG>AAG	p.E385K		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	385	Rod.|Epitope; recognized by IF-specific monoclonal antibody.|Coil 2B.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		GCTGCAATCTCAATATCCAAA	0.388000													118	174					0	0	0.000781405	0	0
C8orf41	80185	broad.mit.edu	37	8	33369706	33369706	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:33369706G>A	uc003xjl.3	-	1	951	c.426C>T	c.(424-426)GGC>GGT	p.G142G	C8orf41_uc003xjk.3_Silent_p.G142G|C8orf41_uc010lvv.2_Silent_p.G142G|C8orf41_uc003xjm.3_Silent_p.G142G|C8orf41_uc003xjn.1_Silent_p.G142G	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	142							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		AGTGATGCAGGCCCGTCTGCC	0.532000													27	41					0	0	0.000586117	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38148081	38148082	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:38148081_38148082CC>AA	uc003xli.2	-	17	3547_3548	c.3029_3030GG>TT	c.(3028-3030)TGG>TTT	p.W1010F	WHSC1L1_uc011lbm.1_Missense_Mutation_p.W1010F|WHSC1L1_uc010lwe.2_Missense_Mutation_p.W961F	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	1010	PWWP 2.				cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			CCTGGTGTACCCAGTAGTAGTC	0.475000			T	NUP98	AML								7	138					0	0	6.4e-05	0	0
RNF5P1	286140	broad.mit.edu	37	8	38458615	38458616	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:38458615_38458616CG>AT	uc003xly.2	-	1	160_161	c.103_104CG>AT	c.(103-105)CGG>ATG	p.R35M		NR_003129				SubName: Full=Putative uncharacterized protein RNF5;												0						CACAGCTTCCCGAGCAGTCTCC	0.614000													11	322					0	0	6.4e-05	0	0
ADAM18	8749	broad.mit.edu	37	8	39468132	39468132	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:39468132G>A	uc003xni.2	+	6	429	c.429G>A	c.(427-429)ATG>ATA	p.M143I	ADAM18_uc003xnh.2_Missense_Mutation_p.M143I|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.M143I	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	143					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTTATCAAATGAAAAATAATG	0.333000													19	26					0	0	0.000958276	0	0
ZMAT4	79698	broad.mit.edu	37	8	40554914	40554914	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:40554914C>T	uc003xnr.2	-	4	345	c.199G>A	c.(199-201)GAT>AAT	p.D67N	ZMAT4_uc003xns.2_Missense_Mutation_p.D67N	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	67						nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			ATGTCGGCATCACTTCCCTGC	0.468000													15	10					0	0	0.000219431	0	0
ST18	9705	broad.mit.edu	37	8	53084982	53084982	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:53084982C>T	uc003xqz.2	-	5	595	c.439G>A	c.(439-441)GAA>AAA	p.E147K	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.E112K|ST18_uc011lds.1_Missense_Mutation_p.E52K|ST18_uc003xra.2_Missense_Mutation_p.E147K|ST18_uc003xrb.2_Missense_Mutation_p.E147K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	147						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTTAAATTTTCACTTACAGTC	0.378000													34	37					0	0	0.000191422	0	0
XKR4	114786	broad.mit.edu	37	8	56436522	56436522	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:56436522C>T	uc003xsf.2	+	3	1721	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	563						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			ATCAGAAATTCGCAGAGCGGG	0.567000													25	15					0	0	0.00047179	0	0
CHD7	55636	broad.mit.edu	37	8	61769341	61769341	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:61769341C>T	uc003xue.2	+	34	7979	c.7502C>T	c.(7501-7503)TCC>TTC	p.S2501F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2501					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CTTAATGGCTCCCTAGTGGAT	0.517000													50	66					0	0	0.000781405	0	0
PREX2	80243	broad.mit.edu	37	8	69032459	69032459	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:69032459G>A	uc003xxv.1	+	29	3560	c.3533G>A	c.(3532-3534)GGG>GAG	p.G1178E		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1178					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTCCTAAAAGGGCAGGCTGTT	0.383000													44	70					0	0	0.000781405	0	0
KCNB2	9312	broad.mit.edu	37	8	73480030	73480030	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:73480030C>T	uc003xzb.2	+	2	649	c.61C>T	c.(61-63)CCT>TCT	p.P21S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	21	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACTTTCCCTTCCTCCAGAGCC	0.522000													45	47					0	0	0.000781405	0	0
CA3	761	broad.mit.edu	37	8	86358512	86358512	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:86358512G>T	uc003ydj.2	+	6	732	c.649G>T	c.(649-651)GTG>TTG	p.V217L	CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	217					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						GCCCATGACCGTGAGCTCTGA	0.532000													15	31					1.5739e-10	1.72638e-09	0.000422831	1	0
INTS8	55656	broad.mit.edu	37	8	95844400	95844400	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:95844400C>A	uc003yhb.2	+	6	877	c.751C>A	c.(751-753)CAG>AAG	p.Q251K	INTS8_uc003yha.1_Missense_Mutation_p.Q251K|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.Q78K	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	251	TPR 1.				snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					AATGCAGTGCCAGGTATTCAT	0.353000													8	193					0.000157383	0.00171611	0.000157383	1	0
TTC35	9694	broad.mit.edu	37	8	109468135	109468135	+	Silent	SNP	T	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:109468135T>A	uc003ymw.1	+	5	374	c.339T>A	c.(337-339)ATT>ATA	p.I113I		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	113	TPR 1.					endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			ATGATAGGATTTTACAAGAAG	0.234000													7	46					0	0	0.000157383	0	0
EXT1	2131	broad.mit.edu	37	8	118819584	118819584	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:118819584G>A	uc003yok.1	-	9	2528	c.1755C>T	c.(1753-1755)TTC>TTT	p.F585F		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	585	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			TCCTCTCAGGGAAGCTCTGCC	0.507000			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				13	18					0	0	0.000219431	0	0
TSNARE1	203062	broad.mit.edu	37	8	143399925	143399925	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr8:143399925G>A	uc003ywk.2	-	7	1082	c.964C>T	c.(964-966)CTG>TTG	p.L322L	TSNARE1_uc011lju.1_Silent_p.L322L|TSNARE1_uc003ywj.2_Silent_p.L322L|TSNARE1_uc003ywl.3_Silent_p.L103L	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	322					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CTGCGCAGCAGCTCGGCCATC	0.652000													44	64					0	0	0.000781405	0	0
DOCK8	81704	broad.mit.edu	37	9	418204	418204	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:418204C>T	uc003zgf.2	+	30	3949	c.3837C>T	c.(3835-3837)TCC>TCT	p.S1279S	DOCK8_uc010mgu.2_Silent_p.S581S|DOCK8_uc010mgv.2_Silent_p.S1179S|DOCK8_uc003zgk.2_Silent_p.S737S	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1279					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TGCTGTCTTCCTTGGTATGTT	0.333000													174	120					0	0	0.000781405	0	0
DMRT1	1761	broad.mit.edu	37	9	916815	916815	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:916815C>T	uc003zgv.2	+	4	1024	c.875C>T	c.(874-876)TCT>TTT	p.S292F		NM_021951	NP_068770	Q9Y5R6	DMRT1_HUMAN	doublesex and mab-3 related transcription factor	292					cell differentiation|male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(10;2.66e-10)|Lung NSC(10;2.82e-10)|Breast(48;0.232)		Lung(218;0.037)		AGGATGCATTCTTACTACCCG	0.502000													46	18					0	0	0.000781405	0	0
PTPRD	5789	broad.mit.edu	37	9	8500886	8500886	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:8500886G>A	uc003zkk.2	-	23	2707	c.1996C>T	c.(1996-1998)CCT>TCT	p.P666S	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.P666S|PTPRD_uc003zkm.2_Missense_Mutation_p.P653S|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	666	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTGTCCGAAGGAATTCCCAAA	0.478000										TSP Lung(15;0.13)			53	139					0	0	0.000781405	0	0
PTPRD	5789	broad.mit.edu	37	9	8500893	8500893	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:8500893C>A	uc003zkk.2	-	23	2700	c.1989G>T	c.(1987-1989)TTG>TTT	p.L663F	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.L663F|PTPRD_uc003zkm.2_Missense_Mutation_p.L650F|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	663	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AAGGAATTCCCAAAATCTCGT	0.483000										TSP Lung(15;0.13)			10	181					7.93312e-07	8.6759e-06	0.000219431	1	0
KLHL9	55958	broad.mit.edu	37	9	21333850	21333851	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:21333850_21333851GG>TT	uc003zoy.2	-	1	1579_1580	c.1008_1009CC>AA	c.(1006-1011)CCCCGT>CCAAGT	p.R337S	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	337	Kelch 1.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		TGCTGGTAACGGGGAGCATCCA	0.411000													7	141					0	0	6.4e-05	0	0
HINT2	84681	broad.mit.edu	37	9	35813317	35813318	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:35813317_35813318GG>AA	uc003zyh.2	-	4	411_412	c.345_346CC>TT	c.(343-348)CTCCTT>CTTTTT	p.L116F	SPAG8_uc003zye.2_5'Flank|SPAG8_uc003zyf.2_5'Flank|SPAG8_uc003zyg.2_5'Flank|HINT2_uc003zyi.2_3'UTR	NM_032593	NP_115982	Q9BX68	HINT2_HUMAN	PKCI-1-related HIT protein precursor	116	HIT.				apoptosis|steroid biosynthetic process	mitochondrion	hydrolase activity				0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			TTGGCCACAAGGAGTAGGTGTC	0.550000											OREG0019179	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	94	62					0	0	6.4e-05	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627757	43627757	+	Silent	SNP	A	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:43627757A>G	uc011lrb.1	-	4	959	c.930T>C	c.(928-930)TGT>TGC	p.C310C		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	310						integral to membrane					0						CTTCCATCTGACAGGTCTCTG	0.532000													5	403					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	9	84675889	84675890	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:84675889_84675890CC>AA	uc010mpu.1	-	3	538_539	c.535_536GG>TT	c.(535-537)GGG>TTG	p.G179L		NM_001164339	NP_001157811			hypothetical protein LOC404770																		GAGTGGAGTCCCACAGGGGAGG	0.564000													7	127					0	0	6.4e-05	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112017848	112017848	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:112017848C>T	uc004bdz.1	-	11	1407	c.1112G>A	c.(1111-1113)GGA>GAA	p.G371E	EPB41L4B_uc004bea.2_Missense_Mutation_p.G371E	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	371						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						TTTGCTGTTTCCTGGCGTCCG	0.522000													33	4					0	0	0.000491102	0	0
MUSK	4593	broad.mit.edu	37	9	113562667	113562667	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:113562667T>G	uc004bey.2	+	14	2107	c.2009T>G	c.(2008-2010)ATG>AGG	p.M670R	MUSK_uc004bez.1_Missense_Mutation_p.M250R	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	670	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CTCCGCAGCATGTCCCCTCAC	0.572000													53	10					0	0	0.000781405	0	0
ASTN2	23245	broad.mit.edu	37	9	119204829	119204829	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:119204829G>A	uc004bjs.1	-	21	3602	c.3501C>T	c.(3499-3501)TTC>TTT	p.F1167F	ASTN2_uc004bjr.1_Silent_p.F1163F|ASTN2_uc004bjt.1_Silent_p.F1116F|ASTN2_uc004bjp.1_Silent_p.F260F|ASTN2_uc004bjq.1_Silent_p.F219F|ASTN2_uc011lxr.1_Silent_p.F219F|ASTN2_uc011lxs.1_Silent_p.F219F|ASTN2_uc011lxt.1_Silent_p.F219F|ASTN2_uc004bjo.1_5'UTR	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1167	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CATACAGAGTGAACCTGCAGC	0.547000													26	6					0	0	0.000586117	0	0
ASTN2	23245	broad.mit.edu	37	9	119903672	119903672	+	Silent	SNP	G	A	A	rs140458736	by1000genomes	TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:119903672G>A	uc004bjs.1	-	4	1202	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	ASTN2_uc004bjr.1_Silent_p.I367I|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	367	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCAGCTGACCGATCTCGATGG	0.587000													17	4					0	0	0.000566183	0	0
TRUB2	26995	broad.mit.edu	37	9	131071999	131071999	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:131071999G>A	uc004buq.1	-	8	836	c.826C>T	c.(826-828)CTA>TTA	p.L276L		NM_015679	NP_056494	O95900	TRUB2_HUMAN	TruB pseudouridine (psi) synthase homolog 2	276					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(1)	1						ATGTTGGTTAGGTCCCACTGG	0.627000													17	5					0	0	0.000958276	0	0
OBP2B	29989	broad.mit.edu	37	9	136082650	136082650	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:136082650C>T	uc004ccz.2	-	4	393	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q	OBP2B_uc010nad.2_RNA|OBP2B_uc011mcy.1_Silent_p.Q49Q	NM_014581	NP_055396	Q9NPH6	OBP2B_HUMAN	odorant binding protein 2B precursor	117					chemosensory behavior|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.41e-06)|Epithelial(140;1.88e-05)		CCCCATGGTGCTGGTCTTTGC	0.587000													16	4					0	0	0.000566183	0	0
COL5A1	1289	broad.mit.edu	37	9	137622286	137622286	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:137622286C>T	uc004cfe.2	+	7	1511	c.1129C>T	c.(1129-1131)CCC>TCC	p.P377S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	377	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGCCGAAATTCCCACCAGCAC	0.617000													29	9					0	0	0.000279167	0	0
ARSH	347527	broad.mit.edu	37	X	2933378	2933378	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:2933378G>A	uc011mhj.1	+	4	708	c.708G>A	c.(706-708)ATG>ATA	p.M236I		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	236						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				AGCAGCCAATGAAAGAGGAGA	0.408000													18	1					0	0	0.000958276	0	0
GAGE10	643832	broad.mit.edu	37	X	49173731	49173731	+	Silent	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:49173731C>T	uc010nir.1	+	4	408	c.292C>T	c.(292-294)CTG>TTG	p.L98L	GAGE10_uc010nis.2_RNA	NM_001098413	NP_001091883	A6NGK3	GAG10_HUMAN	G antigen 10	98											0	Ovarian(276;0.236)					GGAGATGGGCCTGCCAAATCC	0.483000													78	6					0	0	0.000781405	0	0
TRPC5	7224	broad.mit.edu	37	X	111156002	111156002	+	Silent	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:111156002G>A	uc004epl.1	-	3	1336	c.417C>T	c.(415-417)TTC>TTT	p.F139F	TRPC5_uc004epm.1_Silent_p.F139F	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	139	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TGTCCGGTGTGAATTCAGAGA	0.488000													41	6					0	0	0.000589545	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221520	118221520	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:118221520G>A	uc004era.3	-	11	3673	c.3673C>T	c.(3673-3675)CCT>TCT	p.P1225S		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1225										ovary(4)|skin(1)	5						GATTTGGAAGGAAGATTGGGA	0.453000													15	3					0	0	0.000422831	0	0
FRMD7	90167	broad.mit.edu	37	X	131218544	131218544	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:131218544G>A	uc004ewn.2	-	8	893	c.715C>T	c.(715-717)CTC>TTC	p.L239F	FRMD7_uc011muy.1_Missense_Mutation_p.L224F	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	239	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AGTTTGATGAGAAAATGCTTT	0.323000													45	5					0	0	0.000781405	0	0
GPR112	139378	broad.mit.edu	37	X	135430340	135430340	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:135430340C>T	uc004ezu.1	+	6	4766	c.4475C>T	c.(4474-4476)CCA>CTA	p.P1492L	GPR112_uc010nsb.1_Missense_Mutation_p.P1287L|GPR112_uc010nsc.1_Missense_Mutation_p.P1259L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1492	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTTTCTGTTCCAAATGTACCT	0.448000													14	4					0	0	0.000151284	0	0
F8	2157	broad.mit.edu	37	X	154088762	154088762	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:154088762G>A	uc004fmt.2	-	25	7016	c.6845C>T	c.(6844-6846)TCC>TTC	p.S2282F	F8_uc004fms.2_Missense_Mutation_p.S147F	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2282	F5/8 type C 2.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTGACTGCTGGAGATGAGGAA	0.393000													67	14					0	0	0.000781405	0	0
SPRY3	10251	broad.mit.edu	37	X	155004374	155004374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chrX:155004374C>T	uc004fnq.1	+	2	1295	c.841C>T	c.(841-843)CCC>TCC	p.P281S	SPRY3_uc010nvl.1_Missense_Mutation_p.P182S	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	281					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGCACCCTTCCCCAAGGCCCA	0.547000													32	54					0	0	0.000339439	0	0
PDXDC1	23042	broad.mit.edu	37	16	15111005	15111006	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr16:15111005_15111006delTA	uc002dda.3	+	10	1065_1066	c.841_842delTA	c.(841-843)TATfs	p.Y281fs	PDXDC1_uc010uzl.1_Frame_Shift_Del_p.Y266fs|PDXDC1_uc010uzm.1_Frame_Shift_Del_p.Y190fs|PDXDC1_uc002dcz.2_Frame_Shift_Del_p.Y258fs|PDXDC1_uc002ddb.3_Frame_Shift_Del_p.Y254fs|PDXDC1_uc010uzn.1_Frame_Shift_Del_p.Y253fs|PDXDC1_uc002ddc.2_Frame_Shift_Del_p.Y281fs	NM_015027	NP_055842	Q6P996	PDXD1_HUMAN	pyridoxal-dependent decarboxylase domain	281					carboxylic acid metabolic process		carboxy-lyase activity|protein binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	GGCTCTGGGTTATGTCTCCTCA	0.356													104	416	---	---	---	---					
TP53	7157	broad.mit.edu	37	17	7578206	7578207	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr17:7578206_7578207delTA	uc002gim.2	-	6	836_837	c.642_643delTA	c.(640-645)CATAGTfs	p.H214fs	TP53_uc002gig.1_Frame_Shift_Del_p.H214fs|TP53_uc002gih.2_Frame_Shift_Del_p.H214fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.H82fs|TP53_uc010cng.1_Frame_Shift_Del_p.H82fs|TP53_uc002gii.1_Frame_Shift_Del_p.H82fs|TP53_uc010cnh.1_Frame_Shift_Del_p.H214fs|TP53_uc010cni.1_Frame_Shift_Del_p.H214fs|TP53_uc002gij.2_Frame_Shift_Del_p.H214fs|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Frame_Shift_Del_p.H121fs|TP53_uc002gio.2_Frame_Shift_Del_p.H82fs|TP53_uc010vug.1_Frame_Shift_Del_p.H175fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	214_215	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		S -> R (in sporadic cancers; somatic mutation).|S -> C (in sporadic cancers; somatic mutation).|S -> K (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|S -> N (in sporadic cancers; somatic mutation).|S -> T (in sporadic cancers; somatic mutation).|S -> G (in sporadic cancers; somatic mutation).|S -> I (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.H214R(45)|p.0?(7)|p.S215G(6)|p.S215C(5)|p.H214Y(4)|p.H214Q(4)|p.H214D(3)|p.S215R(2)|p.H214fs*33(2)|p.H214fs*5(2)|p.K164_P219del(1)|p.H214fs*7(1)|p.S215fs*27(1)|p.S215del(1)|p.H214_S215insX(1)|p.D208_V216delDRNTFRHSV(1)|p.H214H(1)|p.S215fs*29(1)|p.T211_S215delTFRHS(1)|p.D208fs*1(1)|p.S215fs*32(1)|p.S215fs*31(1)|p.T211fs*28(1)|p.R213_S215>X(1)|p.D207_V216del10(1)|p.R213fs*32(1)|p.R209fs*6(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ACCACCACACTATGTCGAAAAG	0.540		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			7	7	---	---	---	---					
TYK2	7297	broad.mit.edu	37	19	10463113	10463113	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr19:10463113delG	uc002moc.3	-	23	3693	c.3315delC	c.(3313-3315)CCCfs	p.P1105fs	TYK2_uc010dxe.2_Frame_Shift_Del_p.P920fs	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	1105	Protein kinase 2.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CTCTCACCGTGGGGGGGCTCT	0.483													54	107	---	---	---	---					
ATP2C1	27032	broad.mit.edu	37	3	130673915	130673917	+	In_Frame_Del	DEL	AGC	-	-			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr3:130673915_130673917delAGC	uc003enl.2	+	10	969_971	c.747_749delAGC	c.(745-750)CAAGCA>CAA	p.A250del	ATP2C1_uc011blg.1_In_Frame_Del_p.A284del|ATP2C1_uc011blh.1_In_Frame_Del_p.A245del|ATP2C1_uc011bli.1_In_Frame_Del_p.A284del|ATP2C1_uc003enk.2_In_Frame_Del_p.A234del|ATP2C1_uc003enm.2_In_Frame_Del_p.A250del|ATP2C1_uc003enn.2_In_Frame_Del_p.A234del|ATP2C1_uc003eno.2_In_Frame_Del_p.A250del|ATP2C1_uc003enp.2_In_Frame_Del_p.A250del|ATP2C1_uc003enq.2_In_Frame_Del_p.A250del|ATP2C1_uc003enr.2_In_Frame_Del_p.A250del|ATP2C1_uc003ens.2_In_Frame_Del_p.A250del|ATP2C1_uc003ent.2_In_Frame_Del_p.A250del	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	250	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	AAATGATGCAAGCAGAAGAGGTG	0.320									Hailey-Hailey_disease				13	25	---	---	---	---					
KIAA0368	23392	broad.mit.edu	37	9	114131447	114131448	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A1QA-06A-11D-A196-08	TCGA-D3-A1QA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	25b5baab-3714-45ec-b5e2-30bb4527914d	2f342244-54db-4cbf-941e-da8ecd837c0e	g.chr9:114131447_114131448insT	uc004bfe.1	-	47	5514_5515	c.5514_5515insA	c.(5512-5517)TCACTTfs	p.S1838fs		NM_001080398	NP_001073867			KIAA0368 protein												0						CTGCTTTCAAGTGAGTTCTAGG	0.411													14	5	---	---	---	---					
