Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HSPG2	3339	broad.mit.edu	37	1	22157780	22157780	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:22157780G>A	uc001bfj.2	-	84	11530	c.11490C>T	c.(11488-11490)ATC>ATT	p.I3830I	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Silent_p.I3831I	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3830	Laminin G-like 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CATGGAAGACGATCTCCTCGC	0.677000													14	106					0	0	0.000219431	0	0
FGR	2268	broad.mit.edu	37	1	27942078	27942078	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:27942078C>T	uc001boj.2	-	7	1031	c.885G>A	c.(883-885)CCG>CCA	p.P295P	FGR_uc001boi.2_5'UTR|FGR_uc001bok.2_Silent_p.P295P|FGR_uc001bol.2_Silent_p.P295P|FGR_uc001bom.2_Silent_p.P295P	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	295	Protein kinase.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ACATGGTGCCCGGCTTCAGCG	0.667000													6	32					0	0	8.12818e-05	0	0
SPOCD1	90853	broad.mit.edu	37	1	32280764	32280764	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:32280764C>T	uc001bts.1	-	2	229	c.171G>A	c.(169-171)AGG>AGA	p.R57R	SPOCD1_uc001btu.2_Silent_p.R57R|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	57					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		TGGGGATCTTCCTTCTGCTGC	0.637000													4	33					0	0	0.00024832	0	0
CSMD2	114784	broad.mit.edu	37	1	34071571	34071571	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:34071571G>A	uc001bxn.1	-	42	6270	c.6241C>T	c.(6241-6243)CAG>TAG	p.Q2081*	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxo.1_Intron	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2081	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAAGAAATCTGGTGGGAGTAA	0.512000													4	43					0	0	0.00024832	0	0
TYW3	127253	broad.mit.edu	37	1	75198982	75198982	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:75198982G>A	uc001dgn.2	+	1	143	c.54G>A	c.(52-54)GCG>GCA	p.A18A	CRYZ_uc001dgk.2_5'UTR|CRYZ_uc001dgj.2_5'UTR|CRYZ_uc001dgl.2_5'UTR|CRYZ_uc001dgm.2_5'UTR|TYW3_uc010oqw.1_Silent_p.A18A|TYW3_uc010oqx.1_Silent_p.A18A|TYW3_uc010oqy.1_RNA	NM_138467	NP_612476	Q6IPR3	TYW3_HUMAN	tRNA-yW synthesizing protein 3 homolog isoform	18					tRNA processing		methyltransferase activity			ovary(2)	2						TGAGCAAAGCGGACCTCAGCC	0.577000													4	26					0	0	0.00024832	0	0
FLG	2312	broad.mit.edu	37	1	152287815	152287815	+	Missense_Mutation	SNP	C	T	T	rs147859388	by1000genomes	TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:152287815C>T	uc001ezu.1	-	2	154	c.118G>A	c.(118-120)GAA>AAA	p.E40K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	40	EF-hand 1.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCGAAATTCCTTTTCCAGA	0.328000									Ichthyosis				4	36					0	0	0.00024832	0	0
SLAMF6	114836	broad.mit.edu	37	1	160460019	160460019	+	Silent	SNP	T	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:160460019T>A	uc001fwe.1	-	5	825	c.765A>T	c.(763-765)CTA>CTT	p.L255L	SLAMF6_uc001fwd.1_Silent_p.L255L|SLAMF6_uc010pjh.1_Silent_p.L206L|SLAMF6_uc010pji.1_Silent_p.L144L|SLAMF6_uc010pjj.1_Silent_p.L144L	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	255	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			TAGACAAAGATAGGGAATCTG	0.493000													5	34					0	0	0.000602214	0	0
TNR	7143	broad.mit.edu	37	1	175332878	175332878	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:175332878G>A	uc001gkp.1	-	11	2754	c.2673C>T	c.(2671-2673)TTC>TTT	p.F891F	TNR_uc009wwu.1_Silent_p.F891F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	891	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GGTAGTAATCGAAAGATGCAA	0.438000													8	52					0	0	0.000978159	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668453	176668453	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:176668453G>A	uc001gkz.2	+	8	4128	c.2964G>A	c.(2962-2964)CTG>CTA	p.L988L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	988					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGATCTTGCTGGAAAACAAGG	0.552000													14	74					0	0	0.000422831	0	0
ASTN1	460	broad.mit.edu	37	1	176915101	176915101	+	Missense_Mutation	SNP	T	C	C	rs35946265	byFrequency	TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr1:176915101T>C	uc001glc.2	-	13	2422	c.2210A>G	c.(2209-2211)AAG>AGG	p.K737R	ASTN1_uc001glb.1_Missense_Mutation_p.K737R|ASTN1_uc001gld.1_Missense_Mutation_p.K737R|ASTN1_uc009wwx.1_Missense_Mutation_p.K737R	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	745					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AGCCACTTCCTTGGAATGGTT	0.478000													14	112					0	0	0.000151284	0	0
ITIH2	3698	broad.mit.edu	37	10	7763636	7763636	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:7763636G>A	uc001ijs.2	+	8	925	c.763G>A	c.(763-765)GTA>ATA	p.V255I		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	255					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CAAGCCCACGGTAGCACAGCA	0.567000													11	89					0	0	0.000978159	0	0
MCM10	55388	broad.mit.edu	37	10	13228249	13228249	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:13228249A>T	uc001ima.2	+	9	1288	c.1187A>T	c.(1186-1188)AAT>ATT	p.N396I	MCM10_uc001imb.2_Missense_Mutation_p.N395I|MCM10_uc001imc.2_Missense_Mutation_p.N395I	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	396	Zinc finger-like.				cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						AAGAAGAAGAATGGAGAGCCG	0.428000													5	39					0	0	0.000602214	0	0
PPYR1	5540	broad.mit.edu	37	10	47087366	47087366	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:47087366C>T	uc001jee.2	+	3	1002	c.583C>T	c.(583-585)CTG>TTG	p.L195L	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.L195L	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	195	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TCTGGAGTTCCTGGCGGATAA	0.587000													5	136					0	0	3.59834e-05	0	0
UNC5B	219699	broad.mit.edu	37	10	73057761	73057761	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:73057761C>T	uc001jro.2	+	16	3031	c.2586C>T	c.(2584-2586)ATC>ATT	p.I862I	UNC5B_uc001jrp.2_Silent_p.I851I|UNC5B_uc001jrq.1_5'Flank	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	862	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CACTGTCCATCCGCCAGAAGA	0.572000													5	49					0	0	0.000602214	0	0
LRIT2	340745	broad.mit.edu	37	10	85981770	85981770	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:85981770G>A	uc001kcy.2	-	3	1567	c.1559C>T	c.(1558-1560)TCC>TTC	p.S520F	LRIT2_uc010qmc.1_Missense_Mutation_p.S530F	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	520						integral to membrane				ovary(2)	2						TTCTCTAAAGGAGCCATCCTT	0.597000													11	103					0	0	0.000978159	0	0
HTR7	3363	broad.mit.edu	37	10	92503376	92503376	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:92503376G>A	uc001kha.2	-	3	1610	c.1367C>T	c.(1366-1368)TCT>TTT	p.S456F	HTR7_uc001kgz.2_Intron|HTR7_uc001khb.2_Intron	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	456	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	ATGGTCTGGAGATTGTAGCAC	0.488000													4	23					0	0	0.000602214	0	0
NPS	594857	broad.mit.edu	37	10	129347758	129347758	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr10:129347758T>C	uc001ljx.1	+	2	34	c.14T>C	c.(13-15)GTA>GCA	p.V5A		NM_001030013	NP_001025184	P0C0P6	NPS_HUMAN	neuropeptide S precursor	5					neuropeptide signaling pathway	extracellular region					0						TGCAGCTCAGTAAAACTCAAT	0.373000													7	45					0	0	0.000274275	0	0
CCKBR	887	broad.mit.edu	37	11	6292680	6292680	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr11:6292680C>T	uc001mcp.2	+	5	1444	c.1251C>T	c.(1249-1251)CCC>CCT	p.P417P	CCKBR_uc001mcq.2_Silent_p.P345P|CCKBR_uc001mcr.2_Silent_p.P400P|CCKBR_uc001mcs.2_Silent_p.P486P	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	417	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GAGCTCGCCCCAGGGCTCTTC	0.642000													9	58					0	0	0.000274275	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958249	57958249	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr11:57958249G>A	uc010rka.1	+	1	287	c.287G>A	c.(286-288)CGC>CAC	p.R96H		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				TCCCAGGCTCGCTGTGCAGCT	0.592000													12	74					0	0	0.000219431	0	0
DAGLA	747	broad.mit.edu	37	11	61511262	61511262	+	Missense_Mutation	SNP	C	A	A	rs150806850		TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr11:61511262C>A	uc001nsa.2	+	20	2541	c.2430C>A	c.(2428-2430)CAC>CAA	p.H810Q		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	810	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CCAGCCTCCACGCTGTGCTGG	0.652000													14	146					4.93089e-13	4.72397e-12	0.000219431	1	0
RPS3	6188	broad.mit.edu	37	11	75115750	75115750	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr11:75115750C>T	uc001owh.2	+	6	603	c.573C>T	c.(571-573)CCC>CCT	p.P191P	RPS3_uc001owi.2_Silent_p.P191P|RPS3_uc001owk.1_Silent_p.P65P	NM_001005	NP_000996	P23396	RS3_HUMAN	ribosomal protein S3	191					activation of caspase activity|endocrine pancreas development|induction of apoptosis|negative regulation of DNA repair|negative regulation of NF-kappaB transcription factor activity|response to DNA damage stimulus|translational elongation|translational initiation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleus|ruffle membrane	damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|endonuclease activity|iron-sulfur cluster binding|mRNA binding|NF-kappaB binding|protein kinase binding|structural constituent of ribosome				0						TCATGCTGCCCTGGGACCCAA	0.552000													7	58					0	0	0.000157383	0	0
RARG	5916	broad.mit.edu	37	12	53621300	53621300	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:53621300C>T	uc001sce.2	-	3	515	c.30G>A	c.(28-30)GCG>GCA	p.A10A	RARG_uc001scf.2_Silent_p.A10A|RARG_uc001scg.2_Intron|RARG_uc010soc.1_Intron	NM_000966	NP_000957	P13631	RARG_HUMAN	retinoic acid receptor, gamma isoform 1	10	Modulating.				canonical Wnt receptor signaling pathway|embryonic eye morphogenesis|embryonic hindlimb morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|regulation of cell size|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid	integral to membrane|transcription factor complex	retinoic acid receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			breast(2)|ovary(1)|lung(1)	4					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	GGGCACCAGCCGCAAAGAGTC	0.672000													5	20					0	0	0.000602214	0	0
MDM1	56890	broad.mit.edu	37	12	68725001	68725001	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:68725001C>G	uc001stz.2	-	2	155	c.19G>C	c.(19-21)GGG>CGG	p.G7R	MDM1_uc010stc.1_Missense_Mutation_p.G7R|MDM1_uc009zqv.1_5'UTR|MDM1_uc001sua.3_Missense_Mutation_p.G7R|MDM1_uc010std.1_Missense_Mutation_p.G7R	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	7						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		TCACTCAGCCCCTGTAATGCA	0.418000													3	139					0	0	6.4e-05	0	0
KCNMB4	27345	broad.mit.edu	37	12	70760843	70760843	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:70760843A>G	uc001svx.2	+	1	782	c.329A>G	c.(328-330)AAC>AGC	p.N110S		NM_014505	NP_055320	Q86W47	KCMB4_HUMAN	calcium-activated potassium channel beta 4	110	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of neurotransmitter secretion|regulation of vasoconstriction|synaptic transmission	voltage-gated potassium channel complex	calcium-activated potassium channel activity|protein binding				0	Renal(347;0.236)		Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			CTCCTGACCAACCCCAAGGTA	0.662000													7	44					0	0	8.12818e-05	0	0
CIT	11113	broad.mit.edu	37	12	120241141	120241141	+	Silent	SNP	A	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:120241141A>G	uc001txi.1	-	10	1217	c.1164T>C	c.(1162-1164)TTT>TTC	p.F388F	CIT_uc001txh.1_5'UTR|CIT_uc001txj.1_Silent_p.F388F	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	388	AGC-kinase C-terminal.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CTGGTTCATCAAAATTGGAGG	0.502000													12	117					0	0	0.000219431	0	0
SFRS9	8683	broad.mit.edu	37	12	120903445	120903445	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:120903445G>A	uc001tyi.2	-	2	480	c.334C>T	c.(334-336)CGA>TGA	p.R112*	SFRS9_uc009zwy.2_Nonsense_Mutation_p.R112*	NM_003769	NP_003760	Q13242	SRSF9_HUMAN	splicing factor, arginine/serine-rich 9	112	RRM 2.				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|RNA binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACAAGAACTCGGAAATCAGAT	0.368000													8	65					0	0	0.000442599	0	0
KDM2B	84678	broad.mit.edu	37	12	121970717	121970717	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:121970717G>A	uc001uat.2	-	8	1029	c.925C>T	c.(925-927)CCT>TCT	p.P309S	KDM2B_uc001uas.2_Missense_Mutation_p.P278S|KDM2B_uc001uau.2_Missense_Mutation_p.P192S|KDM2B_uc001uav.3_Intron	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	309	JmjC.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CTACCGGAAGGGATGAAAAAT	0.582000													13	64					0	0	0.000151284	0	0
EP400	57634	broad.mit.edu	37	12	132547144	132547144	+	Silent	SNP	G	A	A	rs66689119		TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr12:132547144G>A	uc001ujn.2	+	46	8267	c.8232G>A	c.(8230-8232)CAG>CAA	p.Q2744Q	EP400_uc001ujl.2_Silent_p.Q2743Q|EP400_uc001ujm.2_Silent_p.Q2663Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2780	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcaacagcagcagcagcaac	0.333000													8	42					0	0	0.000274275	0	0
ZMYM2	7750	broad.mit.edu	37	13	20567307	20567307	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr13:20567307G>A	uc001umr.2	+	4	393	c.95G>A	c.(94-96)GGA>GAA	p.G32E	ZMYM2_uc001umq.2_Missense_Mutation_p.G32E|ZMYM2_uc001ums.2_Missense_Mutation_p.G32E|ZMYM2_uc001umt.2_Missense_Mutation_p.G32E|ZMYM2_uc009zzn.1_Missense_Mutation_p.G54E	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	32					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding	p.G32E(1)|p.G32R(1)		lung(3)|ovary(2)|prostate(1)	6		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		ACGAATGTAGGAAACTCATTT	0.408000													8	60					0	0	0.000157383	0	0
PCDH8	5100	broad.mit.edu	37	13	53420310	53420310	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr13:53420310G>A	uc001vhi.2	-	1	2465	c.2262C>T	c.(2260-2262)ATC>ATT	p.I754I	PCDH8_uc001vhj.2_Silent_p.I754I	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	754	Helical; (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CGGCCAGCACGATGATGACGA	0.701000													8	114					0	0	0.000151284	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938316	30938316	+	Splice_Site	SNP	G	A	A	rs112615235	by1000genomes	TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:30938316G>A	uc010azv.1	+	11		c.1127_splice	c.e11-1		ARHGAP11B_uc001zeu.2_Splice_Site			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		TTCCTTGGCAGTGGATAAGTT	0.393000													3	11					0	0	6.4e-05	0	0
SQRDL	58472	broad.mit.edu	37	15	45965882	45965882	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:45965882G>A	uc001zvt.2	+	6	726	c.537G>A	c.(535-537)TGG>TGA	p.W179*	SQRDL_uc001zvu.2_Nonsense_Mutation_p.W179*|SQRDL_uc001zvv.2_Nonsense_Mutation_p.W179*	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	179							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		AGAAGACATGGAAAGCTCTGC	0.433000													10	85					0	0	0.000673444	0	0
GABPB1	2553	broad.mit.edu	37	15	50578290	50578290	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:50578290T>C	uc001zyb.2	-	8	1434	c.1010A>G	c.(1009-1011)AAC>AGC	p.N337S	GABPB1_uc001zya.2_Missense_Mutation_p.N325S|GABPB1_uc010ufg.1_Missense_Mutation_p.N261S|GABPB1_uc001zyc.2_Missense_Mutation_p.N325S|GABPB1_uc001zyd.2_Missense_Mutation_p.N325S|GABPB1_uc001zye.2_Missense_Mutation_p.N337S|GABPB1_uc001zyf.2_Missense_Mutation_p.N324S	NM_005254	NP_005245	Q06547	GABP1_HUMAN	GA binding protein transcription factor, beta	337					positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)	1						TTCCACCCGGTTTTCAATTAT	0.348000													4	50					0	0	3.59834e-05	0	0
WDR72	256764	broad.mit.edu	37	15	53998206	53998206	+	Silent	SNP	A	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:53998206A>T	uc002acj.2	-	10	1062	c.1020T>A	c.(1018-1020)CTT>CTA	p.L340L	WDR72_uc010bfi.1_Silent_p.L340L	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	340	WD 4.									lung(1)|skin(1)	2				all cancers(107;0.0511)		CTCCAGAGAAAAGTACCTTGT	0.393000													7	26					0	0	0.000157383	0	0
CYP1A1	1543	broad.mit.edu	37	15	75012958	75012958	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:75012958G>A	uc002ayp.3	-	7	1533	c.1411C>T	c.(1411-1413)CTG>TTG	p.L471L	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Silent_p.L207L|CYP1A1_uc010bjx.2_Silent_p.L207L|CYP1A1_uc002ayq.3_Silent_p.L471L|CYP1A1_uc010bjy.2_Silent_p.L442L	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	471					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	AGGATAGCCAGGAAGAGAAAG	0.537000									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				11	97					0	0	0.000673444	0	0
LOC645752	645752	broad.mit.edu	37	15	78211517	78211517	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:78211517C>G	uc010bky.2	-	11	1014	c.250G>C	c.(250-252)GTC>CTC	p.V84L		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TTGCTCAGGACACTCAAGGCC	0.557000													5	223					0	0	0.000602214	0	0
KIAA1199	57214	broad.mit.edu	37	15	81173339	81173339	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr15:81173339C>T	uc002bfw.1	+	5	739	c.479C>T	c.(478-480)TCC>TTC	p.S160F	KIAA1199_uc010unn.1_Missense_Mutation_p.S160F	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	160	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AAAAAGCTCTCCTGGACATTT	0.493000													22	81					0	0	0.000229342	0	0
MEFV	4210	broad.mit.edu	37	16	3304362	3304362	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr16:3304362C>T	uc002cun.1	-	2	746	c.706G>A	c.(706-708)GGA>AGA	p.G236R		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	236					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CGCATCTTTCCCGAGGGCAGG	0.627000													14	166					0	0	0.000308642	0	0
KATNB1	10300	broad.mit.edu	37	16	57787354	57787354	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr16:57787354G>A	uc002eml.1	+	12	1474	c.1100G>A	c.(1099-1101)CGG>CAG	p.R367Q		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	367	Interaction with PAFAH1B1 (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				GAGGATGACCGGGACGAGCGC	0.667000													6	33					0	0	0.000157383	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456296	84456296	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr16:84456296C>T	uc002fhx.2	+	9	925	c.836C>T	c.(835-837)GCT>GTT	p.A279V	ATP2C2_uc010chj.2_Missense_Mutation_p.A279V|ATP2C2_uc002fhy.2_Missense_Mutation_p.A296V|ATP2C2_uc002fhz.2_Missense_Mutation_p.A128V	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	279	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						ATGATGCAGGCTGAAGAGGTA	0.478000													18	153					0	0	0.000958276	0	0
OR1A2	26189	broad.mit.edu	37	17	3101267	3101267	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr17:3101267G>A	uc002fvd.1	+	1	455	c.455G>A	c.(454-456)GGA>GAA	p.G152E		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGGTGATTGGAAACACCAGT	0.493000													4	27					0	0	0.00024832	0	0
SHBG	6462	broad.mit.edu	37	17	7535032	7535032	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr17:7535032C>T	uc002gie.2	+	5	719	c.681C>T	c.(679-681)CTC>CTT	p.L227L	SHBG_uc010cmo.2_Silent_p.L115L|SHBG_uc010cmp.2_Silent_p.L169L|SHBG_uc010cmq.2_Silent_p.L115L|SHBG_uc010cmr.2_Silent_p.L115L|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Silent_p.L169L|SHBG_uc010cmu.2_Silent_p.L169L|SHBG_uc010cmz.2_Silent_p.L169L|SHBG_uc010cmv.2_Silent_p.L115L|SHBG_uc010cmw.2_Silent_p.L115L|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Silent_p.L169L|SHBG_uc002gid.3_Silent_p.L169L|SHBG_uc010cnd.2_Silent_p.L173L|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Silent_p.L209L|SHBG_uc010vuf.1_Silent_p.L227L|SHBG_uc010cnb.2_Silent_p.L227L|SHBG_uc010cnc.2_Silent_p.L173L	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	227	Laminin G-like 2.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	GGATATTTCTCCCTCCAGGGA	0.557000													17	223					0	0	0.000175454	0	0
DNAH2	146754	broad.mit.edu	37	17	7646342	7646342	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr17:7646342C>T	uc002giu.1	+	11	1800	c.1786C>T	c.(1786-1788)CGA>TGA	p.R596*	DNAH2_uc002git.2_Nonsense_Mutation_p.R678*|DNAH2_uc010vuk.1_Nonsense_Mutation_p.R596*	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	596	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGAGCTGGTTCGAAAAACCTT	0.537000													6	67					0	0	8.12818e-05	0	0
THRA	7067	broad.mit.edu	37	17	38233777	38233777	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr17:38233777C>T	uc002htw.2	+	4	621	c.138C>T	c.(136-138)TAC>TAT	p.Y46Y	THRA_uc010cwp.1_Silent_p.Y46Y|THRA_uc002htv.2_Silent_p.Y46Y|THRA_uc002htx.2_Silent_p.Y46Y	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	46	Modulating.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	TCCCTAGTTACCTGGACAAAG	0.537000													10	98					0	0	0.000673444	0	0
SLC4A1	6521	broad.mit.edu	37	17	42330593	42330593	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr17:42330593G>A	uc002igf.3	-	17	2353	c.2204C>T	c.(2203-2205)GCC>GTC	p.A735V		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	735	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GAGGGCGTTGGCATGGGTGAC	0.642000													6	43					0	0	3.59834e-05	0	0
DNAH17	8632	broad.mit.edu	37	17	76440827	76440827	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr17:76440827G>A	uc010dhp.1	-	16	2609	c.2387C>T	c.(2386-2388)TCT>TTT	p.S796F	DNAH17_uc002jvq.2_Missense_Mutation_p.S81F|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GCGCTTGGCAGATCCTTCGAT	0.577000													5	59					0	0	0.000602214	0	0
SEMA6B	10501	broad.mit.edu	37	19	4546451	4546451	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr19:4546451G>C	uc010duc.1	-	14	1670	c.1632C>G	c.(1630-1632)TGC>TGG	p.C544W	SEMA6B_uc010dud.2_Missense_Mutation_p.C544W|SEMA6B_uc010xih.1_Intron	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	544	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCCACCCGCAGTAGGGGT	0.622000													2	5					0	0	0.00024832	0	0
OR1I1	126370	broad.mit.edu	37	19	15198338	15198338	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr19:15198338C>T	uc010xoe.1	+	1	462	c.462C>T	c.(460-462)CTC>CTT	p.L154L		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						TCACCAACCTCCAGTCTCTCA	0.562000													5	33					0	0	3.59834e-05	0	0
NFKBIB	4793	broad.mit.edu	37	19	39396105	39396105	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr19:39396105C>T	uc002ojw.2	+	3	607	c.549C>T	c.(547-549)TCC>TCT	p.S183S	NFKBIB_uc002ojx.2_Silent_p.S151S|NFKBIB_uc002ojy.2_Silent_p.S183S	NM_002503	NP_002494	Q15653	IKBB_HUMAN	nuclear factor of kappa light polypeptide gene	183					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleus	protein binding|signal transducer activity|transcription coactivator activity			lung(1)|kidney(1)	2	all_cancers(60;4.39e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			ACCCCGATTCCGACTTGGAGA	0.632000													6	58					0	0	0.000157383	0	0
MEGF8	1954	broad.mit.edu	37	19	42861644	42861644	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr19:42861644C>T	uc002otl.3	+	27	5353	c.4718C>T	c.(4717-4719)TCC>TTC	p.S1573F	MEGF8_uc002otm.3_Missense_Mutation_p.S1181F	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1640	Extracellular (Potential).|Kelch 9.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GGCGGTTACTCCCCGGAAAAT	0.662000													7	53					0	0	8.12818e-05	0	0
TSKS	60385	broad.mit.edu	37	19	50251672	50251672	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr19:50251672C>T	uc002ppm.2	-	3	465	c.454G>A	c.(454-456)GAA>AAA	p.E152K		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	152							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		TTGGTCTTTTCCTTCAAGCTG	0.562000													8	84					0	0	0.000673444	0	0
DNAH6	1768	broad.mit.edu	37	2	84811252	84811252	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr2:84811252C>T	uc010fgb.2	+	15	2496	c.2359C>T	c.(2359-2361)CGG>TGG	p.R787W	DNAH6_uc002soo.2_Missense_Mutation_p.R366W|DNAH6_uc002sop.2_Missense_Mutation_p.R366W	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	787	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TGTTGCTGTTCGGAATGCCAT	0.393000													5	52					0	0	3.59834e-05	0	0
FBLN7	129804	broad.mit.edu	37	2	112942830	112942830	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr2:112942830C>T	uc002tho.1	+	7	1132	c.861C>T	c.(859-861)TGC>TGT	p.C287C	FBLN7_uc002thn.2_Silent_p.C287C|FBLN7_uc010fki.1_Silent_p.C241C|FBLN7_uc010fkj.1_Silent_p.C153C	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	287	EGF-like 3; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						GGACCACATGCATCAACACCG	0.577000													7	74					0	0	0.000157383	0	0
FAM117B	150864	broad.mit.edu	37	2	203622021	203622021	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr2:203622021C>T	uc010zhx.1	+	6	1200	c.1190C>T	c.(1189-1191)CCT>CTT	p.P397L		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	397										ovary(1)	1						ACACAGACGCCTGGTGGGGCA	0.552000													10	168					0	0	0.000673444	0	0
PER2	8864	broad.mit.edu	37	2	239184504	239184504	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr2:239184504C>T	uc002vyc.2	-	4	565	c.328G>A	c.(328-330)GAA>AAA	p.E110K	PER2_uc010znv.1_Missense_Mutation_p.E110K|PER2_uc010znw.1_Missense_Mutation_p.E110K|PER2_uc010fyx.1_Missense_Mutation_p.E110K	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	110					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		TTTATCAGTTCTTTGTGTGTG	0.507000													9	100					0	0	0.000274275	0	0
CAPN10	11132	broad.mit.edu	37	2	241533417	241533417	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr2:241533417C>T	uc002vzk.1	+	5	967	c.783C>T	c.(781-783)ATC>ATT	p.I261I	CAPN10_uc010zoh.1_Silent_p.I261I|CAPN10_uc002vzl.1_Silent_p.I261I|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Silent_p.I133I|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	261	Calpain catalytic.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		TGCTGCGGATCCAGAACCCCT	0.697000													12	99					0	0	0.000151284	0	0
TGM3	7053	broad.mit.edu	37	20	2290305	2290305	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr20:2290305C>T	uc002wfx.3	+	2	107	c.10C>T	c.(10-12)CTA>TTA	p.L4L		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	4					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CCTCACAGCTCTAGGAGTCCA	0.547000													5	76					0	0	3.59834e-05	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524178	24524178	+	Missense_Mutation	SNP	G	A	A	rs146672556	byFrequency	TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr20:24524178G>A	uc002wtw.1	+	2	1078	c.445G>A	c.(445-447)GAT>AAT	p.D149N		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	149	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTGTCCTACGATGTGGAGGA	0.547000													7	126					0	0	0.000274275	0	0
C20orf4	25980	broad.mit.edu	37	20	34832830	34832830	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr20:34832830C>T	uc002xfc.1	+	3	1062	c.969C>T	c.(967-969)TTC>TTT	p.F323F	C20orf4_uc002xfd.1_Silent_p.F323F|C20orf4_uc002xfe.1_Silent_p.F323F	NM_015511	NP_056326	Q9Y312	CT004_HUMAN	hypothetical protein LOC25980	323											0	Breast(12;0.0162)	Myeloproliferative disorder(115;0.0393)				AAGACAACTTCCTCACCAGCA	0.488000													10	26					0	0	0.000673444	0	0
CSE1L	1434	broad.mit.edu	37	20	47706113	47706113	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr20:47706113C>T	uc002xty.2	+	19	2145	c.2011C>T	c.(2011-2013)CTG>TTG	p.L671L	CSE1L_uc010zyg.1_Silent_p.L454L|CSE1L_uc010ghx.2_Silent_p.L615L|CSE1L_uc010ghy.2_Silent_p.L292L|CSE1L_uc010zyh.1_Silent_p.L320L	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	671					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			GTCTTTGCTTCTGGAAACACA	0.408000													7	49					0	0	0.000274275	0	0
ZNF217	7764	broad.mit.edu	37	20	52198559	52198559	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr20:52198559G>A	uc002xwq.3	-	1	1078	c.807C>T	c.(805-807)TTC>TTT	p.F269F	ZNF217_uc010gij.1_Silent_p.F261F	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	269					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			GTCTCAAGTTGAACAACTGCA	0.547000													21	136					0	0	0.000175454	0	0
UPB1	51733	broad.mit.edu	37	22	24896102	24896102	+	Silent	SNP	C	T	T	rs9620392		TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr22:24896102C>T	uc003aaf.2	+	2	253	c.132C>T	c.(130-132)TTC>TTT	p.F44F	UPB1_uc003aae.2_Intron|UPB1_uc011ajt.1_Silent_p.F44F	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	44					pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					GGGAAGCTTTCGAAGCTGCCT	0.527000													6	90					0	0	0.000157383	0	0
CRYBA4	1413	broad.mit.edu	37	22	27024386	27024386	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr22:27024386C>T	uc003acz.3	+	5	470	c.435C>T	c.(433-435)CAC>CAT	p.H145H		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	145	Beta/gamma crystallin 'Greek key' 3.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						TCCACGTCCACTCTGGGGCGT	0.552000													7	51					0	0	0.000274275	0	0
PVALB	5816	broad.mit.edu	37	22	37211241	37211241	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr22:37211241C>T	uc010gwz.2	-	2	130	c.100G>A	c.(100-102)GTC>ATC	p.V34I	PVALB_uc003apx.2_Missense_Mutation_p.V34I	NM_002854	NP_002845	P20472	PRVA_HUMAN	parvalbumin	34							calcium ion binding			skin(1)	1						TTCAGGCCGACCATTTGGAAG	0.517000													9	52					0	0	0.000442599	0	0
SYN2	6854	broad.mit.edu	37	3	12224831	12224831	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr3:12224831C>T	uc003bwm.2	+	15	1492	c.1328C>T	c.(1327-1329)CCG>CTG	p.P443L	SYN2_uc003bwl.1_Missense_Mutation_p.P443L|SYN2_uc003bwn.2_Missense_Mutation_p.P117L	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	443					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						CTTAAGGATCCGGACTCAAGC	0.468000													16	179					0	0	0.00074312	0	0
XIRP1	165904	broad.mit.edu	37	3	39228016	39228016	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr3:39228016G>A	uc003cjk.1	-	2	3142	c.2921C>T	c.(2920-2922)CCC>CTC	p.P974L	XIRP1_uc003cji.2_Missense_Mutation_p.P974L|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	974							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTCCAGTGGGGGAACATGGAT	0.667000													10	59					0	0	0.00010058	0	0
SETD2	29072	broad.mit.edu	37	3	47144868	47144868	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr3:47144868G>A	uc003cqs.2	-	7	4938	c.4885C>T	c.(4885-4887)CAC>TAC	p.H1629Y	SETD2_uc003cqv.2_Missense_Mutation_p.H1696Y	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1629	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding	p.R1629fs*15(1)		kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TCACAGCTGTGATTCATGAAA	0.333000			N|F|S|Mis		clear cell renal carcinoma								7	47					0	0	0.000673444	0	0
HLTF	6596	broad.mit.edu	37	3	148778438	148778438	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr3:148778438C>A	uc003ewq.1	-	12	1495	c.1277G>T	c.(1276-1278)AGG>ATG	p.R426M	HLTF_uc003ewr.1_Missense_Mutation_p.R426M|HLTF_uc003ews.1_Missense_Mutation_p.R426M|HLTF_uc010hve.1_Missense_Mutation_p.R426M	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	426					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			ACCTTTCGCCCTGCCTTTAGT	0.323000													7	170					0.000157383	0.00146845	0.000157383	1	0
AFAP1	60312	broad.mit.edu	37	4	7780517	7780517	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:7780517G>A	uc003gkg.1	-	13	1890	c.1617C>T	c.(1615-1617)CCC>CCT	p.P539P	AFAP1_uc011bwk.1_Silent_p.P623P|LOC84740_uc003gkd.3_RNA	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	539						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						CAACAGCCGCGGGATCCGCTT	0.532000													21	192					0	0	0.000295444	0	0
CLRN2	645104	broad.mit.edu	37	4	17528679	17528679	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:17528679G>A	uc003gpg.1	+	3	775	c.673G>A	c.(673-675)GTC>ATC	p.V225I		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	225						integral to membrane					0						AGAGGCCACGGTCACAGCTGA	0.512000													6	69					0	0	3.59834e-05	0	0
LGI2	55203	broad.mit.edu	37	4	25005685	25005685	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:25005685G>A	uc003grf.2	-	8	1125	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	342	EAR 3.					extracellular region					0		Breast(46;0.173)				AGCTGTCTGCGATGACAAAGA	0.468000													10	35					0	0	0.000673444	0	0
AMBN	258	broad.mit.edu	37	4	71467326	71467326	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:71467326G>A	uc003hfl.2	+	6	561	c.486G>A	c.(484-486)CTG>CTA	p.L162L		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	162					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			AACTGCCTCTGGTTCAGCAGC	0.512000											OREG0016218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	33					0	0	0.000602214	0	0
PPM1K	152926	broad.mit.edu	37	4	89190026	89190026	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:89190026C>G	uc003hrm.3	-	4	964	c.574G>C	c.(574-576)GTA>CTA	p.V192L	PPM1K_uc010ikp.1_3'UTR	NM_152542	NP_689755	Q8N3J5	PPM1K_HUMAN	protein phosphatase 1K (PP2C domain containing)	192	PP2C-like.				protein dephosphorylation	mitochondrial matrix|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000192)		AATAGGGCTACTGTTGCAGTA	0.408000													3	43					0	0	6.4e-05	0	0
PPP3CA	5530	broad.mit.edu	37	4	101947123	101947123	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:101947123C>G	uc011cen.1	-	14	2140	c.1465G>C	c.(1465-1467)GCC>CCC	p.A489P	PPP3CA_uc003hvu.2_Missense_Mutation_p.A479P|PPP3CA_uc010ilj.2_Missense_Mutation_p.A437P|PPP3CA_uc003hvt.2_Missense_Mutation_p.A466P|PPP3CA_uc003hvs.2_Missense_Mutation_p.A422P|PPP3CA_uc010ilk.2_Missense_Mutation_p.A257P	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	489					protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		GAGGGCATGGCATCTCTGCGA	0.483000													3	57					0	0	6.4e-05	0	0
CISD2	493856	broad.mit.edu	37	4	103806372	103806372	+	Splice_Site	SNP	G	C	C			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:103806372G>C	uc003hwt.3	+	2	211	c.104_splice	c.e2-1	p.V35_splice	NHEDC1_uc003hwu.2_3'UTR|NHEDC1_uc010ilm.2_3'UTR|NHEDC1_uc003hwv.2_RNA	NM_001008388	NP_001008389	Q8N5K1	CISD2_HUMAN	CDGSH iron sulfur domain 2						multicellular organismal aging|regulation of autophagy	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane|protein complex	2 iron, 2 sulfur cluster binding|metal ion binding|protein homodimerization activity				0				OV - Ovarian serous cystadenocarcinoma(123;1.97e-08)		TACATGTTTAGTTTCAGAATG	0.403000													14	130					0	0	0.000219431	0	0
PET112L	5188	broad.mit.edu	37	4	152679989	152679989	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr4:152679989G>A	uc003iml.2	-	2	274	c.262C>T	c.(262-264)CGC>TGC	p.R88C	PET112L_uc003imm.3_Missense_Mutation_p.R88C	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	88						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCTGAAAAGCGAACTTGAGAT	0.383000													7	92					0	0	0.000274275	0	0
LPCAT1	79888	broad.mit.edu	37	5	1477559	1477559	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr5:1477559G>A	uc003jcm.2	-	9	976	c.859C>T	c.(859-861)CCC>TCC	p.P287S		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	287	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TACAGCGCGGGGTTCCTCTTC	0.582000													8	61					0	0	0.000673444	0	0
DDX4	54514	broad.mit.edu	37	5	55110772	55110772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr5:55110772C>T	uc003jqg.3	+	20	1833	c.1759C>T	c.(1759-1761)CGC>TGC	p.R587C	DDX4_uc010ivz.2_Missense_Mutation_p.R567C|DDX4_uc003jqh.3_Missense_Mutation_p.R553C|DDX4_uc003jqj.2_Missense_Mutation_p.R438C	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	587	Helicase C-terminal.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TGGAGATTTTCGCTTTGGAAA	0.403000													5	49					0	0	3.59834e-05	0	0
TIFAB	497189	broad.mit.edu	37	5	134785454	134785454	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr5:134785454G>A	uc003law.3	-	2	377	c.176C>T	c.(175-177)TCC>TTC	p.S59F	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	59	FHA.										0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGGCTCCAGGGACAGGTGACG	0.672000													5	48					0	0	0.000602214	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308742	140308742	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr5:140308742C>T	uc003lih.2	+	1	2441	c.2265C>T	c.(2263-2265)CTC>CTT	p.L755L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.L755L	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	755	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACTTATCTCTATCGGGCCT	0.478000													10	88					0	0	0.000978159	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159776698	159776698	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr5:159776698C>T	uc003lyd.2	-	3	474	c.470G>A	c.(469-471)GGG>GAG	p.G157E		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	112	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACCGTTGACCCCCTTGGGGCC	0.687000													16	93					0	0	0.000422831	0	0
EDN1	1906	broad.mit.edu	37	6	12294286	12294286	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:12294286G>A	uc003nae.3	+	3	680	c.346G>A	c.(346-348)GAC>AAC	p.D116N	EDN1_uc003nad.2_Missense_Mutation_p.D116N|EDN1_uc003naf.3_Missense_Mutation_p.D115N	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	116	Endothelin-like.				artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				TAGCCAAAAAGACAAGAAGTG	0.448000													17	46					0	0	0.000566183	0	0
SCAND3	114821	broad.mit.edu	37	6	28543374	28543374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:28543374C>T	uc003nlo.2	-	3	1726	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	370	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAACTAACTTCCTTAATTGAT	0.343000													6	59					0	0	3.59834e-05	0	0
TRIM39	56658	broad.mit.edu	37	6	30309586	30309586	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:30309586C>T	uc010jrz.2	+	9	1419	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	TRIM39_uc003npz.2_Silent_p.L339L|TRIM39_uc003nqb.2_Silent_p.L339L|TRIM39_uc003nqc.2_Silent_p.L339L|TRIM39_uc010jsa.1_Silent_p.L339L	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	369	B30.2/SPRY.				apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						TCCGGGATCTCCCTGACACAC	0.567000													10	29					0	0	0.000978159	0	0
PAQR8	85315	broad.mit.edu	37	6	52268563	52268563	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:52268563C>T	uc003pao.3	+	2	726	c.552C>T	c.(550-552)GCC>GCT	p.A184A		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	184	Helical; Name=3; (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					CAGCAGCTGCCTTCTGTGGCT	0.507000													45	100					0	0	0.000437636	0	0
MDN1	23195	broad.mit.edu	37	6	90365646	90365646	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:90365646G>A	uc003pnn.1	-	92	15443	c.15327C>T	c.(15325-15327)TCC>TCT	p.S5109S		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5109					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GATCACCCATGGAACGTTCAT	0.428000													4	21					0	0	3.59834e-05	0	0
SLC2A12	154091	broad.mit.edu	37	6	134349981	134349981	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:134349981C>T	uc003qem.1	-	2	1153	c.982G>A	c.(982-984)GTC>ATC	p.V328I		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	328	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		GTGCTAATGACCTTGACGACT	0.488000													5	26					0	0	0.000602214	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592605	167592605	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:167592605T>G	uc010kkp.2	+	6	895	c.764T>G	c.(763-765)GTT>GGT	p.V255G		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	255											0						GCAGCCGGAGTTGCTGGTGAG	0.582000													3	17					0	0	6.4e-05	0	0
TBP	6908	broad.mit.edu	37	6	170871246	170871246	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr6:170871246C>T	uc003qxt.2	+	3	654	c.422C>T	c.(421-423)TCC>TTC	p.S141F	TBP_uc003qxu.2_Missense_Mutation_p.S141F|TBP_uc011ehf.1_Missense_Mutation_p.S121F|TBP_uc011ehg.1_Missense_Mutation_p.S141F	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	141					cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		CTGTATCCCTCCCCCATGACT	0.577000													7	35					0	0	0.000157383	0	0
MICALL2	79778	broad.mit.edu	37	7	1474304	1474304	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:1474304G>A	uc003skj.3	-	17	2790	c.2643C>T	c.(2641-2643)CTC>CTT	p.L881L	MICALL2_uc003skh.3_Missense_Mutation_p.P89S|MICALL2_uc003ski.3_Missense_Mutation_p.P367S	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	881						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		TCTTCCTCTGGAGGCCTAGGG	0.617000													12	72					0	0	0.000151284	0	0
CARD11	84433	broad.mit.edu	37	7	2959008	2959008	+	Silent	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:2959008G>A	uc003smv.2	-	18	2912	c.2508C>T	c.(2506-2508)AGC>AGT	p.S836S		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	836					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GGCCTCACCGGCTGTAGCTGG	0.607000			Mis		DLBCL								8	73					0	0	0.000978159	0	0
AEBP1	165	broad.mit.edu	37	7	44146195	44146195	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:44146195G>A	uc003tkb.2	+	2	609	c.304G>A	c.(304-306)GGC>AGC	p.G102S		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	102	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GAAAGACAAAGGCCCCAAGGT	0.577000													10	30					0	0	0.00010058	0	0
WBSCR17	64409	broad.mit.edu	37	7	70885994	70885994	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:70885994G>A	uc003tvy.2	+	5	865	c.865G>A	c.(865-867)GAG>AAG	p.E289K	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	289	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GCAGCGGTACGAGAACTCGGC	0.587000													18	79					0	0	0.000566183	0	0
CADPS2	93664	broad.mit.edu	37	7	121960249	121960249	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:121960249C>T	uc010lkp.2	-	29	4024	c.3861G>A	c.(3859-3861)ATG>ATA	p.M1287I	CADPS2_uc011knx.1_Missense_Mutation_p.M662I|CADPS2_uc003vkg.3_Missense_Mutation_p.M941I|CADPS2_uc010lkq.2_Missense_Mutation_p.M1246I	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1287					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						CACTGTCTTTCATAGTAATGC	0.423000													7	65					0	0	8.12818e-05	0	0
GCC1	79571	broad.mit.edu	37	7	127223349	127223349	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:127223349C>T	uc003vma.2	-	2	1465	c.1047G>A	c.(1045-1047)GAG>GAA	p.E349E		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	349	Potential.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						GGAGTTGATCCTCTGCAAGAG	0.507000													33	97					0	0	0.000491102	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				3	19					0	0	0.00024832	0	0
UBE3C	9690	broad.mit.edu	37	7	156979615	156979615	+	Silent	SNP	C	T	T	rs143608582		TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr7:156979615C>T	uc010lqs.2	+	10	1543	c.1231C>T	c.(1231-1233)CTG>TTG	p.L411L	UBE3C_uc003wnf.2_Silent_p.L368L|UBE3C_uc003wng.2_Silent_p.L411L	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	411					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		CCTGCTCAACCTGGTGTGGAG	0.547000													5	25					0	0	0.000602214	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228829	57228829	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr8:57228829C>T	uc003xsy.1	-	2	716	c.78G>A	c.(76-78)ATG>ATA	p.M26I	SDR16C5_uc010lyk.1_Missense_Mutation_p.M26I|SDR16C5_uc010lyl.1_Missense_Mutation_p.M26I	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	26	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGCAAAAATCATAGCCTCCA	0.448000													5	47					0	0	0.000602214	0	0
DENND3	22898	broad.mit.edu	37	8	142178404	142178404	+	Silent	SNP	C	T	T	rs139726064		TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr8:142178404C>T	uc003yvy.2	+	13	2093	c.1815C>T	c.(1813-1815)GCC>GCT	p.A605A	DENND3_uc010mep.2_Silent_p.A566A|DENND3_uc003yvz.1_Silent_p.A289A	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	605										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCATGTCTGCCCCTGAGTGGG	0.572000													10	100					0	0	0.000673444	0	0
PLEC	5339	broad.mit.edu	37	8	145024808	145024808	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr8:145024808C>T	uc003zaf.1	-	1	237	c.67G>A	c.(67-69)GGC>AGC	p.G23S	PLEC_uc003zag.1_Intron|PLEC_uc003zah.2_Intron|PLEC_uc003zaj.2_Intron	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	23	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						ACCATCACGCCCTCGCGGAAG	0.692000													5	30					0	0	3.59834e-05	0	0
IFNA21	3452	broad.mit.edu	37	9	21166363	21166363	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr9:21166363C>T	uc003zom.2	-	1	297	c.249G>A	c.(247-249)ATG>ATA	p.M83I		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	83					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TCTGCTGGATCATCTCATGGA	0.488000													6	40					0	0	3.59834e-05	0	0
KIAA1539	80256	broad.mit.edu	37	9	35108141	35108141	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr9:35108141G>A	uc003zwl.2	-	3	456	c.131C>T	c.(130-132)TCC>TTC	p.S44F	KIAA1539_uc003zwm.2_Missense_Mutation_p.S44F|KIAA1539_uc003zwn.2_5'UTR|KIAA1539_uc003zwo.2_Missense_Mutation_p.S44F|KIAA1539_uc003zwp.1_Missense_Mutation_p.S44F|KIAA1539_uc010mkk.1_RNA	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	44						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GACCCCGGGGGATGTCGCCCC	0.667000													4	14					0	0	0.00024832	0	0
FBP1	2203	broad.mit.edu	37	9	97382612	97382612	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr9:97382612C>T	uc004auw.3	-	2	663	c.332G>A	c.(331-333)AGG>AAG	p.R111K	FBP1_uc010mrl.2_Missense_Mutation_p.R111K	NM_000507	NP_000498	P09467	F16P1_HUMAN	fructose-1,6-bisphosphatase 1	111					gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)			Adenosine monophosphate(DB00131)	CAGACCCACCCTTTTCTCCGG	0.468000													12	54					0	0	0.000151284	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597000													3	56					0	0	0.00024832	0	0
FAM47C	442444	broad.mit.edu	37	X	37027834	37027834	+	Missense_Mutation	SNP	C	T	T	rs61730908	byFrequency	TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chrX:37027834C>T	uc004ddl.1	+	1	1365	c.1351C>T	c.(1351-1353)CGC>TGC	p.R451C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	451										ovary(3)	3						GTCCCATCTCCGCCCAGAGCC	0.622000													11	19					0	0	0.000673444	0	0
SYN1	6853	broad.mit.edu	37	X	47436013	47436013	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chrX:47436013G>T	uc004die.2	-	7	993	c.864C>A	c.(862-864)TTC>TTA	p.F288L	SYN1_uc004did.2_Missense_Mutation_p.F288L	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	288	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						CGATGTCCTGGAAGTCATGCT	0.587000													7	23					8.12818e-05	0.000765048	8.12818e-05	1	0
HEPH	9843	broad.mit.edu	37	X	65409641	65409641	+	Silent	SNP	C	T	T			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chrX:65409641C>T	uc011moz.1	+	6	993	c.933C>T	c.(931-933)TTC>TTT	p.F311F	HEPH_uc004dwn.2_Silent_p.F311F|HEPH_uc004dwo.2_Silent_p.F41F|HEPH_uc010nkr.2_Silent_p.F311F|HEPH_uc011mpa.1_Silent_p.F311F	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	308	Extracellular (Potential).|Plastocyanin-like 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CAGCATTTTTCCATGGACAGA	0.493000													4	12					0	0	0.00024832	0	0
THOC2	57187	broad.mit.edu	37	X	122801095	122801095	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2J9-06A-11D-A196-08	TCGA-D3-A2J9-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	94d106c8-8fa9-49f4-b013-58b3909fa36a	df57dd72-f54c-4f51-a259-dd5b7f5fba12	g.chrX:122801095G>A	uc004etu.2	-	11	1084	c.1052C>T	c.(1051-1053)GCC>GTC	p.A351V	THOC2_uc011muh.1_Missense_Mutation_p.A272V|THOC2_uc011mui.1_Missense_Mutation_p.A236V	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	351					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						CTTTAATAAGGCTTCCAACAA	0.378000													11	17					0	0	0.00010058	0	0
