Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562													3	5					0	0	0.021553	0	0
MST1P9	11223	broad.mit.edu	37	1	17085373	17085373	+	Missense_Mutation	SNP	C	T	T	rs2092130	by1000genomes	TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:17085373C>T	uc010ock.1	-	10	1318	c.1318G>A	c.(1318-1320)GGG>AGG	p.G440R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.M1I	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TGGCTATCCCCATCTGGGTCT	0.602													3	51					0	0	0.009096	0	0
ELTD1	64123	broad.mit.edu	37	1	79383605	79383605	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:79383605T>C	uc001diq.3	-	11	1748	c.1592A>G	c.(1591-1593)AAG>AGG	p.K531R		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	531	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ATAAAAATTCTTGTGCAAAAA	0.393													10	102					0	0	0.006214	0	0
SSX2IP	117178	broad.mit.edu	37	1	85136353	85136353	+	Silent	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:85136353T>C	uc001dkh.2	-	4	464	c.189A>G	c.(187-189)GAA>GAG	p.E63E	SSX2IP_uc001dkf.2_Silent_p.E36E|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Silent_p.E36E|SSX2IP_uc001dki.2_Silent_p.E63E|SSX2IP_uc010osa.1_Silent_p.E36E|SSX2IP_uc001dkj.2_Silent_p.E63E|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Silent_p.E59E	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	63					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		AGATACTCTGTTCAATATTAT	0.299													8	71					0	0	0.003080	0	0
OLFM3	118427	broad.mit.edu	37	1	102270070	102270070	+	Silent	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:102270070A>G	uc001duf.2	-	6	1232	c.1161T>C	c.(1159-1161)ACT>ACC	p.T387T	OLFM3_uc001dug.2_Silent_p.T367T|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Silent_p.T292T|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	387	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		TGGGGTAGCCAGTGCTCCAGC	0.478													11	77					0	0	0.008291	0	0
DCST2	127579	broad.mit.edu	37	1	155004049	155004049	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:155004049C>T	uc001fgm.2	-	4	819	c.739_splice	c.e4+1	p.L247_splice	DCST2_uc009wpb.2_Splice_Site|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2							integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGTTTTCTCACGGCTGGCAAG	0.517													19	55					0	0	0.008871	0	0
CFHR4	10877	broad.mit.edu	37	1	196884213	196884213	+	Silent	SNP	T	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:196884213T>A	uc001gto.2	+	5	813	c.744T>A	c.(742-744)GGT>GGA	p.G248G	CFHR4_uc009wyy.2_Silent_p.G494G|CFHR4_uc001gtp.2_Silent_p.G495G	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	248	Sushi 4.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						AACTTCAGGGTTCTAATTATG	0.398													9	165					0	0	0.004482	0	0
PIGR	5284	broad.mit.edu	37	1	207110861	207110861	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:207110861G>C	uc001hez.2	-	4	808	c.624C>G	c.(622-624)AAC>AAG	p.N208K	PIGR_uc009xbz.2_Missense_Mutation_p.N208K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	208	Ig-like V-type 2.|Extracellular (Potential).			NQ -> DE (in Ref. 6; AA sequence and 7; AA sequence).		extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCCTGAGTTGGTTGATGACAA	0.483													4	51					0	0	0.009096	0	0
HNRNPU	3192	broad.mit.edu	37	1	245018852	245018852	+	Silent	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr1:245018852G>A	uc001iaz.1	-	12	2444	c.2226C>T	c.(2224-2226)GGC>GGT	p.G742G	HNRNPU_uc001iaw.1_RNA|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Silent_p.G466G|HNRNPU_uc001iba.1_Silent_p.G723G	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	742	Gly-rich.|Poly-Gly.				CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			TTCCTCCACCGCCACCACCTC	0.502													5	91					0	0	0.021553	0	0
MASTL	84930	broad.mit.edu	37	10	27454438	27454438	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr10:27454438A>G	uc001itm.2	+	6	1420	c.781A>G	c.(781-783)ACG>GCG	p.T261A	MASTL_uc001itl.2_Missense_Mutation_p.T261A|MASTL_uc009xkw.1_Missense_Mutation_p.T261A|MASTL_uc009xkx.1_RNA	NM_032844	NP_116233	Q96GX5	GWL_HUMAN	microtubule associated serine/threonine	261	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|mitosis|negative regulation of protein phosphatase type 2A activity|regulation of cell cycle|response to DNA damage stimulus	centrosome|cleavage furrow|nucleus	ATP binding|protein phosphatase 2A binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						AAAGGACACTACGCCTTATTC	0.279													5	57					0	0	0.021553	0	0
HNRNPF	3185	broad.mit.edu	37	10	43883047	43883047	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr10:43883047C>T	uc009xmh.1	-	3	773	c.286G>A	c.(286-288)GTG>ATG	p.V96M	HNRNPF_uc001jar.2_Missense_Mutation_p.V96M|HNRNPF_uc001jas.2_Missense_Mutation_p.V96M|HNRNPF_uc001jat.2_Missense_Mutation_p.V96M|HNRNPF_uc001jav.2_Missense_Mutation_p.V96M|HNRNPF_uc001jau.2_Missense_Mutation_p.V96M|uc010qfa.1_3'UTR	NM_001098208	NP_001091678	P52597	HNRPF_HUMAN	heterogeneous nuclear ribonucleoprotein F	96					regulation of RNA splicing	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding				0						TGCTTCAACACCCAATCCATC	0.498													6	58					0	0	0.029380	0	0
ZNF22	7570	broad.mit.edu	37	10	45498963	45498963	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr10:45498963C>G	uc001jbw.2	+	2	390	c.147C>G	c.(145-147)AGC>AGG	p.S49R	C10orf25_uc010qff.1_5'Flank|C10orf25_uc001jbv.1_5'Flank|uc001jbx.1_RNA	NM_006963	NP_008894	P17026	ZNF22_HUMAN	zinc finger protein 22 (KOX 15)	49					odontogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|plasma membrane	DNA binding|zinc ion binding			breast(1)|kidney(1)	2		Prostate(175;0.0352)|all_neural(218;0.202)				TCAGAAGAAGCTTGGATGACA	0.438													9	67					0	0	0.008291	0	0
ZNF22	7570	broad.mit.edu	37	10	45498982	45498982	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr10:45498982A>G	uc001jbw.2	+	2	409	c.166A>G	c.(166-168)AAA>GAA	p.K56E	C10orf25_uc010qff.1_5'Flank|C10orf25_uc001jbv.1_5'Flank|uc001jbx.1_RNA	NM_006963	NP_008894	P17026	ZNF22_HUMAN	zinc finger protein 22 (KOX 15)	56	C2H2-type 1.				odontogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|plasma membrane	DNA binding|zinc ion binding			breast(1)|kidney(1)	2		Prostate(175;0.0352)|all_neural(218;0.202)				CAAACCCTATAAATGTACTGA	0.433													8	55					0	0	0.006214	0	0
PCDH15	65217	broad.mit.edu	37	10	55587280	55587280	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr10:55587280G>A	uc001jju.1	-	32	4635	c.4240C>T	c.(4240-4242)CGA>TGA	p.R1414*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.R1419*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.R1414*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.R1426*|PCDH15_uc010qht.1_Nonsense_Mutation_p.R1421*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.R1414*|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Nonsense_Mutation_p.R1411*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.R1374*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.R1343*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.R1419*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.R1414*|PCDH15_uc010qia.1_Nonsense_Mutation_p.R1392*|PCDH15_uc010qib.1_Nonsense_Mutation_p.R1389*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1414	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCCTGAATTCGTGCAGTCTTT	0.403										HNSCC(58;0.16)			6	58					0	0	0.003080	0	0
MUC5B	727897	broad.mit.edu	37	11	1264737	1264737	+	Silent	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:1264737G>A	uc009ycr.1	+	48	8667	c.8541G>A	c.(8539-8541)ACG>ACA	p.T2847T	MUC5B_uc001ltb.2_Silent_p.T2212T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2209	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GTCCCCACACGGTGCGCACAG	0.662													18	46					0	0	0.016522	0	0
HBD	3045	broad.mit.edu	37	11	5255363	5255363	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:5255363T>G	uc001maf.1	-	2	368	c.173A>C	c.(172-174)AAC>ACC	p.N58T		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	58					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACCTTAGGGTTGCCCATAAC	0.527													15	78					0	0	0.028581	0	0
OR51B6	390058	broad.mit.edu	37	11	5373366	5373366	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:5373366T>C	uc010qzb.1	+	1	629	c.629T>C	c.(628-630)CTC>CCC	p.L210P	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTGGACTTTCTCATCATCTTT	0.438													9	96					0	0	0.006214	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529328	5529328	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:5529328C>G	uc001may.1	-	2	1547	c.1461G>C	c.(1459-1461)AGG>AGC	p.R487S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	487										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCATCTGGCCTCAGAGATC	0.572													17	78					0	0	0.033300	0	0
TRIM22	10346	broad.mit.edu	37	11	5717766	5717766	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:5717766A>C	uc001mbr.2	+	2	581	c.304A>C	c.(304-306)AAA>CAA	p.K102Q	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Missense_Mutation_p.K102Q|TRIM22_uc009yes.2_Missense_Mutation_p.K102Q|TRIM22_uc010qzm.1_Missense_Mutation_p.E7D|TRIM22_uc009yeu.2_5'UTR	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	102	B box-type.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		GCACCATGGAAAAAAACTCCA	0.478													7	58					0	0	0.003080	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806470	6806470	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:6806470C>G	uc001mer.1	+	1	202	c.202C>G	c.(202-204)CTC>GTC	p.L68V		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCAGCTCTCTCTCATGGACCT	0.552													4	165					0	0	0.009096	0	0
SLC17A6	57084	broad.mit.edu	37	11	22381014	22381014	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:22381014G>T	uc001mqk.2	+	4	927	c.514G>T	c.(514-516)GCA>TCA	p.A172S		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	172	Vesicular (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						AATTCCATCAGCAGCCAGAGT	0.398													7	59					0.00307968	0.00319813	0.003080	1	0
PHF21A	51317	broad.mit.edu	37	11	46001496	46001496	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:46001496G>A	uc001ncc.3	-	6	799	c.175C>T	c.(175-177)CGG>TGG	p.R59W	PHF21A_uc001ncb.3_Missense_Mutation_p.R59W|PHF21A_uc009ykx.2_Missense_Mutation_p.R59W|PHF21A_uc001nce.2_Missense_Mutation_p.R59W	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	59	Gln-rich.				blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						AGGTTCTTCCGTAGCTGTTCA	0.328													4	54					0	0	0.009096	0	0
INHBC	3626	broad.mit.edu	37	12	57828826	57828826	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr12:57828826G>A	uc001snv.1	+	1	284	c.157G>A	c.(157-159)GAC>AAC	p.D53N		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	53					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						AAGCATCTTGGACAAGCTGCA	0.632													34	56					0	0	0.021022	0	0
GRIP1	23426	broad.mit.edu	37	12	66786136	66786136	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr12:66786136C>G	uc001stk.2	-	18	2501	c.2260G>C	c.(2260-2262)GTG>CTG	p.V754L	GRIP1_uc010sta.1_Missense_Mutation_p.V698L|GRIP1_uc001stj.2_Missense_Mutation_p.V536L|GRIP1_uc001stl.1_Missense_Mutation_p.V646L|GRIP1_uc001stm.2_Missense_Mutation_p.V754L	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	806					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		CATGAATCCACAGCACTGTCC	0.547													17	164					0	0	0.006122	0	0
RAB3IP	117177	broad.mit.edu	37	12	70178515	70178515	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr12:70178515G>C	uc001svp.2	+	4	1021	c.574G>C	c.(574-576)GAT>CAT	p.D192H	RAB3IP_uc001svl.1_Missense_Mutation_p.D176H|RAB3IP_uc001svm.2_Missense_Mutation_p.D176H|RAB3IP_uc001svn.2_Missense_Mutation_p.D176H|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Missense_Mutation_p.D192H|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA|RAB3IP_uc001svt.2_5'UTR	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	192	Potential.				cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			GAAGTTAAAAGATGAAGAATG	0.323													4	133					0	0	0.009096	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72013863	72013863	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr12:72013863G>A	uc001swo.2	-	26	5251	c.4892C>T	c.(4891-4893)TCA>TTA	p.S1631L		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1631	TPR 3.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						AATAGGACATGATTCCAATAA	0.353													13	29					0	0	0.013537	0	0
LUM	4060	broad.mit.edu	37	12	91502123	91502123	+	Silent	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr12:91502123A>G	uc001tbm.2	-	2	1023	c.634T>C	c.(634-636)TTA>CTA	p.L212L	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	212	LRR 7.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						TTGTTGTCTAAGTAGAGAGTT	0.413													5	76					0	0	0.014758	0	0
USP44	84101	broad.mit.edu	37	12	95926931	95926931	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr12:95926931G>C	uc001teg.2	-	2	1246	c.1102C>G	c.(1102-1104)CTT>GTT	p.L368V	USP44_uc001teh.2_Missense_Mutation_p.L368V|USP44_uc009zte.2_Missense_Mutation_p.L365V	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	368					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						GGCTGAATAAGTTCCATCTTT	0.418													5	79					0	0	0.014758	0	0
OR4M1	441670	broad.mit.edu	37	14	20248923	20248923	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr14:20248923T>A	uc010tku.1	+	1	442	c.442T>A	c.(442-444)TCC>ACC	p.S148T		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGTGGCTCTCTCCTGGATGGG	0.502													12	185					0	0	0.013537	0	0
AKAP6	9472	broad.mit.edu	37	14	33292622	33292622	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr14:33292622A>C	uc001wrq.2	+	13	5773	c.5603A>C	c.(5602-5604)CAT>CCT	p.H1868P		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1868					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AATTCATCTCATACCCATGAG	0.358													4	30					0	0	0.009096	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413771	22413771	+	Silent	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr15:22413771T>C	uc001yuf.2	+	1	70	c.70T>C	c.(70-72)TTG>CTG	p.L24L		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GCTCTTTTTCTTGCACTTCCT	0.493													7	179					0	0	0.006214	0	0
MYO5C	55930	broad.mit.edu	37	15	52567822	52567822	+	Silent	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr15:52567822G>A	uc010bff.2	-	5	680	c.543C>T	c.(541-543)GTC>GTT	p.V181V	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Silent_p.V144V	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	181	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CCGATTTGCTGACGGTGGCAA	0.542													7	95					0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	15	102312676	102312676	+	RNA	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr15:102312676T>C	uc010utm.1	+	1		c.1T>C			uc002ccq.3_5'Flank|uc010utn.1_5'Flank|uc002ccs.1_5'Flank|uc010uto.1_5'Flank|uc002cct.1_5'Flank|uc002ccu.2_5'Flank|uc002ccv.1_5'Flank|uc002ccw.2_5'Flank|uc010utp.1_5'Flank					DQ596604																		AGGAGGTCCATAAGGCCACTC	0.562													5	57					0	0	0.021553	0	0
CMTM2	146225	broad.mit.edu	37	16	66613633	66613633	+	Silent	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr16:66613633G>A	uc002ept.2	+	1	283	c.123G>A	c.(121-123)GCG>GCA	p.A41A	CMTM2_uc010cdu.2_Silent_p.A41A	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	41					chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		CTCAAAAGGCGGTGCAGGACC	0.622													6	47					0	0	0.029380	0	0
TMEM88	92162	broad.mit.edu	37	17	7758463	7758463	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr17:7758463G>C	uc002giy.2	+	1	80	c.71G>C	c.(70-72)TGT>TCT	p.C24S	CYB5D1_uc010cnn.1_5'Flank|CYB5D1_uc002gjb.3_5'Flank	NM_203411	NP_981956	Q6PEY1	TMM88_HUMAN	transmembrane protein 88	24						integral to membrane					0		all_cancers(10;0.00528)|Prostate(122;0.202)				CCCCTGGACTGTTGGGCCTGC	0.672													5	21					0	0	0.021553	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904125	21904125	+	RNA	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr17:21904125G>A	uc002gza.2	+	1		c.64G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ggagtcgcaaggggccgagca	0													3	34					0	0	0.004672	0	0
WSB1	26118	broad.mit.edu	37	17	25639344	25639344	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr17:25639344G>T	uc002gzd.1	+	9	1531	c.1215G>T	c.(1213-1215)CAG>CAT	p.Q405H	WSB1_uc002gze.1_Missense_Mutation_p.Q259H|WSB1_uc002gzf.1_RNA	NM_015626	NP_056441	Q9Y6I7	WSB1_HUMAN	WD repeat and SOCS box-containing 1 isoform 1	405	SOCS box.				intracellular signal transduction	intracellular	protein binding				0	all_cancers(1;2e-13)|all_epithelial(1;4.8e-15)|Lung NSC(42;0.00152)		BRCA - Breast invasive adenocarcinoma(3;0.0152)	UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AAGAAGTTCAGGAGCTGCCGA	0.478													24	339					6.07407e-21	6.56e-21	0.034045	1	0
TMEM132E	124842	broad.mit.edu	37	17	32953505	32953505	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr17:32953505C>T	uc002hif.2	+	2	755	c.427C>T	c.(427-429)CAG>TAG	p.Q143*		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	143	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GCCCGTGGTCCAGGTGCTGTT	0.697													3	24					0	0	0.004672	0	0
NOL4	8715	broad.mit.edu	37	18	31537451	31537451	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr18:31537451A>C	uc010dmi.2	-	8	1496	c.1267T>G	c.(1267-1269)TTG>GTG	p.L423V	NOL4_uc010xbs.1_Missense_Mutation_p.L138V|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Missense_Mutation_p.L349V|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	423						nucleolus	RNA binding			ovary(3)	3						ATTCGGTCCAAGTTTTCATCT	0.493													7	26					0	0	0.029380	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471766	61471766	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr18:61471766A>C	uc002ljl.2	+	8	1136	c.1040A>C	c.(1039-1041)AAG>ACG	p.K347T	SERPINB7_uc002ljm.2_Missense_Mutation_p.K347T|SERPINB7_uc010xet.1_Missense_Mutation_p.K330T|SERPINB7_uc010dqg.2_Missense_Mutation_p.K347T	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	347		Reactive bond (By similarity).			regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				ATTGTAGAAAAGCAACTCCCT	0.453													7	28					0	0	0.029380	0	0
NANOS3	342977	broad.mit.edu	37	19	13988290	13988290	+	Silent	SNP	G	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr19:13988290G>T	uc002mxj.3	+	1	341	c.228G>T	c.(226-228)CTG>CTT	p.L76L		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	57	Nanos-type.				anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			CCGAACGCCTGTGCTCTTTCT	0.657													7	31					0.00307968	0.00319813	0.003080	1	0
KIAA1683	80726	broad.mit.edu	37	19	18377313	18377313	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr19:18377313A>G	uc002nin.2	-	3	1253	c.1037T>C	c.(1036-1038)GTC>GCC	p.V346A	KIAA1683_uc010ebn.2_Missense_Mutation_p.V346A|KIAA1683_uc010xqe.1_Missense_Mutation_p.V300A	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	346	Thr-rich.					mitochondrion				ovary(2)	2						GGTCACGGAGACCACTGGATA	0.557													7	81					0	0	0.003080	0	0
ZNF211	10520	broad.mit.edu	37	19	58153368	58153368	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr19:58153368G>C	uc002qpq.2	+	3	1694	c.1514G>C	c.(1513-1515)GGA>GCA	p.G505A	ZNF211_uc010yhb.1_Missense_Mutation_p.G509A|ZNF211_uc002qpp.2_Missense_Mutation_p.G518A|ZNF211_uc002qpr.2_Missense_Mutation_p.G569A|ZNF211_uc002qps.2_Missense_Mutation_p.G570A|ZNF211_uc002qpt.2_Missense_Mutation_p.G517A|ZNF211_uc010yhc.1_Missense_Mutation_p.G517A|ZNF211_uc010yhd.1_Missense_Mutation_p.G444A|ZNF211_uc010yhe.1_Missense_Mutation_p.G496A	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	505						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTTCACACTGGAGAAAGGCCT	0.443													6	44					0	0	0.021553	0	0
WDR43	23160	broad.mit.edu	37	2	29152468	29152468	+	Silent	SNP	A	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr2:29152468A>T	uc002rmo.2	+	11	1361	c.1329A>T	c.(1327-1329)GGA>GGT	p.G443G		NM_015131	NP_055946	Q15061	WDR43_HUMAN	WD repeat domain 43	443						nucleolus				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AACGTCTGGGAGCAATGGATA	0.363													5	27					0	0	0.014758	0	0
LMAN2L	81562	broad.mit.edu	37	2	97377656	97377656	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr2:97377656C>T	uc002swu.2	-	5	650	c.614G>A	c.(613-615)CGC>CAC	p.R205H	LMAN2L_uc002swv.2_Missense_Mutation_p.R216H|LMAN2L_uc010yut.1_Missense_Mutation_p.R71H|LMAN2L_uc010yuu.1_Missense_Mutation_p.R69H|LMAN2L_uc010yuv.1_Missense_Mutation_p.R58H|LMAN2L_uc010yuw.1_Missense_Mutation_p.R60H|LMAN2L_uc002sww.2_Missense_Mutation_p.R58H|LMAN2L_uc010yux.1_Missense_Mutation_p.R60H	NM_030805	NP_110432	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like isoform 2	205	L-type lectin-like.|Lumenal (Potential).				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding				0						ATGAAGATTGCGGACAATGGC	0.562													4	69					0	0	0.014758	0	0
TTN	7273	broad.mit.edu	37	2	179600395	179600395	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr2:179600395T>G	uc010zfg.1	-	47	11270	c.11046A>C	c.(11044-11046)CAA>CAC	p.Q3682H	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.Q343H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4609							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGGGAGTTTTTGCCCATCTT	0.418													3	42					0	0	0.004672	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627881	234627881	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr2:234627881A>G	uc002vux.2	+	1	444	c.415A>G	c.(415-417)AGG>GGG	p.R139G	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.R139G	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	139					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	GGCCCTGATCAGGCACCTGAA	0.453													4	191					0	0	0.014758	0	0
LRRN4	164312	broad.mit.edu	37	20	6022584	6022584	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr20:6022584G>C	uc002wmo.2	-	5	1531	c.1307C>G	c.(1306-1308)TCT>TGT	p.S436C		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	436	Extracellular (Potential).					integral to membrane				skin(3)	3						ACCTGCTACAGAGTTGGTCGT	0.637													6	72					0	0	0.029380	0	0
CCR8	1237	broad.mit.edu	37	3	39374061	39374061	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:39374061C>G	uc010hhr.2	+	2	377	c.239C>G	c.(238-240)TCT>TGT	p.S80C	CCR8_uc003cjm.2_Intron	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	80	Helical; Name=2; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		CTGGCCCTGTCTGACCTGCTT	0.493													36	307					0	0	0.017118	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64139008	64139008	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:64139008G>A	uc003dmf.2	-	6	1223	c.637C>T	c.(637-639)CGA>TGA	p.R213*		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	213	LIM zinc-binding 2.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		TGCCAGTGTCGCCCCTCAGCT	0.498													15	153					0	0	0.006122	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64589985	64589985	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:64589985T>C	uc003dmg.2	-	24	3529	c.3497A>G	c.(3496-3498)CAT>CGT	p.H1166R	ADAMTS9_uc011bfo.1_Missense_Mutation_p.H1138R|ADAMTS9_uc003dmh.1_Missense_Mutation_p.H995R|ADAMTS9_uc011bfp.1_Missense_Mutation_p.H77R	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1166	TSP type-1 6.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TGGGGGAGGATGACATGATGG	0.473													30	627					0	0	0.019004	0	0
FAM19A4	151647	broad.mit.edu	37	3	68802155	68802155	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:68802155T>C	uc003dnh.1	-	4	588	c.145A>G	c.(145-147)AAG>GAG	p.K49E	FAM19A4_uc003dni.1_Missense_Mutation_p.K49E	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	49						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		GTCCCTTGCTTGATTTGGTGG	0.493													4	44					0	0	0.014758	0	0
OR5K4	403278	broad.mit.edu	37	3	98072851	98072851	+	Missense_Mutation	SNP	G	A	A	rs139874815	byFrequency	TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:98072851G>A	uc011bgv.1	+	1	154	c.154G>A	c.(154-156)GAG>AAG	p.E52K		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AATTTATGTAGAGCGTCGTCT	0.463													17	227					0	0	0.028581	0	0
MYH15	22989	broad.mit.edu	37	3	108158593	108158593	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:108158593T>G	uc003dxa.1	-	25	3183	c.3126A>C	c.(3124-3126)CAA>CAC	p.Q1042H		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1042	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCTCATCAACTTGCTGTTCCA	0.443													12	111					0	0	0.020292	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567													5	14					0	0	0.014323	0	0
IL12A	3592	broad.mit.edu	37	3	159710871	159710871	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:159710871A>C	uc003fcx.2	+	3	552	c.337A>C	c.(337-339)ACC>CCC	p.T113P	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	79					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			AAAAGATAAAACCAGCACAGT	0.383													3	111					0	0	0.004672	0	0
SERPINI1	5274	broad.mit.edu	37	3	167507139	167507139	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:167507139T>G	uc003ffa.3	+	2	421	c.223T>G	c.(223-225)TCA>GCA	p.S75A	SERPINI1_uc003ffb.3_Missense_Mutation_p.S75A	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	75					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						AATCCGCCACTCAATGGGATA	0.383													8	29					0	0	0.006214	0	0
C3orf59	151963	broad.mit.edu	37	3	192517116	192517116	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr3:192517116A>C	uc011bsp.1	-	2	856	c.535T>G	c.(535-537)TTC>GTC	p.F179V		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	179											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		GTAGGTGAGAAGAAGTAGTTG	0.463													4	71					0	0	0.009096	0	0
RBM47	54502	broad.mit.edu	37	4	40440107	40440107	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr4:40440107C>G	uc003gvc.2	-	4	1514	c.804G>C	c.(802-804)CAG>CAC	p.Q268H	RBM47_uc003gvd.2_Missense_Mutation_p.Q268H|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.Q230H|RBM47_uc003gvg.1_Missense_Mutation_p.Q268H	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	268	RRM 3.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CGGGGTTGAACTGGCCGAAGC	0.592													5	75					0	0	0.021553	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73280628	73280628	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr4:73280628G>A	uc003hgk.1	-	4	602	c.565C>T	c.(565-567)CAG>TAG	p.Q189*		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	189					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TCCTCCATCTGTTTACCTCTT	0.368													6	55					0	0	0.029380	0	0
NPY2R	4887	broad.mit.edu	37	4	156135929	156135929	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr4:156135929A>C	uc003ioq.2	+	2	1333	c.838A>C	c.(838-840)AGC>CGC	p.S280R	NPY2R_uc003ior.2_Missense_Mutation_p.S280R	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	280	Helical; Name=6; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GTTTGCGGTCAGCTGGCTGCC	0.517													3	39					0	0	0.004672	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632186	156632186	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr4:156632186T>C	uc003iov.2	+	7	1405	c.869T>C	c.(868-870)TTC>TCC	p.F290S	GUCY1A3_uc003iou.2_Missense_Mutation_p.F290S|GUCY1A3_uc010iqc.2_Missense_Mutation_p.F290S|GUCY1A3_uc003iow.2_Missense_Mutation_p.F290S|GUCY1A3_uc010iqd.2_Missense_Mutation_p.F289S|GUCY1A3_uc003iox.2_Missense_Mutation_p.F290S|GUCY1A3_uc003ioz.2_Missense_Mutation_p.F55S|GUCY1A3_uc003ioy.2_Missense_Mutation_p.F290S|GUCY1A3_uc010iqe.2_Missense_Mutation_p.F55S|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.F290S	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	290					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CCATTCCATTTCATGTTTGAC	0.443													3	54					0	0	0.004672	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156710914	156710914	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr4:156710914C>T	uc003ipc.2	+	5	513	c.346C>T	c.(346-348)CGT>TGT	p.R116C	GUCY1B3_uc011cio.1_Missense_Mutation_p.R138C|GUCY1B3_uc011cip.1_Missense_Mutation_p.R96C|GUCY1B3_uc003ipd.2_Missense_Mutation_p.R44C|GUCY1B3_uc010iqf.2_Missense_Mutation_p.R116C|GUCY1B3_uc010iqg.2_Missense_Mutation_p.R44C|GUCY1B3_uc011ciq.1_Missense_Mutation_p.R44C	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	116					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		CCCAGGAATGCGTGCACCTTC	0.463													8	98					0	0	0.003080	0	0
MTRR	4552	broad.mit.edu	37	5	7873569	7873569	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr5:7873569G>C	uc003jed.2	+	3	324	c.294G>C	c.(292-294)AAG>AAC	p.K98N	MTRR_uc010itn.1_Intron|MTRR_uc003jee.3_Missense_Mutation_p.K71N|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_Intron|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	98	Flavodoxin-like.				methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	CAGCCCGCAAGTTTGTTAAGG	0.463													4	89					0	0	0.009096	0	0
NIPBL	25836	broad.mit.edu	37	5	36962278	36962278	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr5:36962278A>G	uc003jkl.3	+	6	1011	c.512A>G	c.(511-513)AAT>AGT	p.N171S	NIPBL_uc003jkk.3_Missense_Mutation_p.N171S|NIPBL_uc003jkm.1_Missense_Mutation_p.N50S	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	171					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			CCACAGCAAAATAGCCCAGTG	0.433													8	176					0	0	0.004482	0	0
ETF1	2107	broad.mit.edu	37	5	137846839	137846839	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr5:137846839C>T	uc003ldc.3	-	8	1078	c.913G>A	c.(913-915)GTT>ATT	p.V305I	ETF1_uc011cyv.1_Missense_Mutation_p.V291I|ETF1_uc010jex.2_RNA|ETF1_uc003ldd.3_Missense_Mutation_p.V272I	NM_004730	NP_004721	P62495	ERF1_HUMAN	eukaryotic translation termination factor 1	305					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation|regulation of translational termination	cytoplasm	protein binding|ribosome binding|translation release factor activity, codon specific			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GTATCTTCAACGCCAAAACAG	0.388													7	63					0	0	0.029380	0	0
BTNL8	79908	broad.mit.edu	37	5	180377319	180377319	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr5:180377319G>C	uc003mmp.2	+	8	1512	c.1278G>C	c.(1276-1278)CAG>CAC	p.Q426H	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Missense_Mutation_p.Q301H|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Missense_Mutation_p.Q310H|BTNL8_uc011dhh.1_Missense_Mutation_p.Q242H	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	426	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TAAATGACCAGTCCCTTATTT	0.458													12	80					0	0	0.016723	0	0
OR2J2	26707	broad.mit.edu	37	6	29141880	29141880	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:29141880C>G	uc011dlm.1	+	1	570	c.468C>G	c.(466-468)ATC>ATG	p.I156M		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTTTTACTATCTCAGCACTTC	0.458													14	219					0	0	0.006122	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32411551	32411551	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:32411551C>T	uc003obh.2	+	4	710	c.629C>T	c.(628-630)CCT>CTT	p.P210L	HLA-DRA_uc003obi.2_Missense_Mutation_p.P185L	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	210	Connecting peptide.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						GCTCCAAGCCCTCTCCCAGAG	0.488									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				12	163					0	0	0.020292	0	0
SRPK1	6732	broad.mit.edu	37	6	35825037	35825037	+	Splice_Site	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:35825037C>G	uc003olj.2	-	13	1743	c.1620_splice	c.e13+1	p.M540_splice	SRPK1_uc011dtg.1_Splice_Site_p.M524_splice|SRPK1_uc003olh.2_Splice_Site_p.M433_splice|SRPK1_uc003oli.2_Splice_Site_p.M433_splice	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1						cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						AAAAACATTACCATGCATGCC	0.398													2	17					0	0	0.004672	0	0
TFEB	7942	broad.mit.edu	37	6	41652468	41652468	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:41652468C>T	uc003oqs.1	-	10	1602	c.1300G>A	c.(1300-1302)GAC>AAC	p.D434N	TFEB_uc003oqt.1_Missense_Mutation_p.D434N|TFEB_uc003oqu.1_Missense_Mutation_p.D448N|TFEB_uc003oqr.1_Missense_Mutation_p.D349N	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	434				EPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPLLSTMS PEASKASSRRSSFSMEEGDVL -> DRN (in Ref. 1).	embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGCATGAGGTCCAGATCCTTC	0.677			T	ALPHA	renal (childhood epithelioid)								5	71					0	0	0.014758	0	0
CUL9	23113	broad.mit.edu	37	6	43152353	43152353	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:43152353G>A	uc003ouk.2	+	2	380	c.305G>A	c.(304-306)CGA>CAA	p.R102Q	CUL9_uc003ouj.1_Missense_Mutation_p.R102Q|CUL9_uc003oul.2_Missense_Mutation_p.R102Q|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_5'Flank	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	102					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						AGCTTTCCTCGAGATCCAGGA	0.602													10	115					0	0	0.008291	0	0
PGK2	5232	broad.mit.edu	37	6	49754266	49754266	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:49754266A>C	uc003ozu.2	-	1	742	c.635T>G	c.(634-636)CTT>CGT	p.L212R		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	212					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GGCTCCACCAAGTATAGCCAG	0.423													6	98					0	0	0.021553	0	0
PEX7	5191	broad.mit.edu	37	6	137219309	137219309	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr6:137219309T>A	uc003qhd.2	+	9	935	c.833T>A	c.(832-834)CTT>CAT	p.L278H	PEX7_uc010kgx.2_RNA	NM_000288	NP_000279	O00628	PEX7_HUMAN	peroxisomal biogenesis factor 7	278					ether lipid biosynthetic process|protein import into peroxisome matrix	peroxisome	peroxisome matrix targeting signal-2 binding				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000257)|OV - Ovarian serous cystadenocarcinoma(155;0.00492)		CCTGACTCTCTTCTTGAAACA	0.338													4	52					0	0	0.014758	0	0
PDE1C	5137	broad.mit.edu	37	7	31793050	31793050	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr7:31793050C>G	uc003tcm.1	-	18	2547	c.2078G>C	c.(2077-2079)AGG>ACG	p.R693T	PDE1C_uc003tcn.1_Missense_Mutation_p.R693T|PDE1C_uc003tco.1_Missense_Mutation_p.R753T	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	693					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CATTTTGATCCTCTGATCCAG	0.448													13	260					0	0	0.013537	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130883	75130883	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr7:75130883G>A	uc011kfy.1	+	6	894	c.758G>A	c.(757-759)CGT>CAT	p.R253H		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	253	Arg-rich.										0						CAGTTAGGCCGTTCCATGAAC	0.592													5	305					0	0	0.014758	0	0
VGF	7425	broad.mit.edu	37	7	100807584	100807585	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr7:100807584_100807585CC>AG	uc003uxx.3	-	2	758_759	c.540_541GG>CT	c.(538-543)ACGGCG>ACCTCG	p.A181S		NM_003378	NP_003369	O15240	VGF_HUMAN	VGF nerve growth factor inducible precursor	181					response to cAMP	extracellular space|transport vesicle	growth factor activity				0	Lung NSC(181;0.168)|all_lung(186;0.215)					TCTGCTGCCGCCGTCTCCTGCT	0.663													3	55					0	0	0.004672	0	0
NUP205	23165	broad.mit.edu	37	7	135263592	135263592	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr7:135263592G>A	uc003vsw.2	+	7	1002	c.971G>A	c.(970-972)GGG>GAG	p.G324E	NUP205_uc011kqa.1_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	324					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						AAACTGCCTGGGCTCCAAGCC	0.443													5	73					0	0	0.014758	0	0
HNF4G	3174	broad.mit.edu	37	8	76465282	76465282	+	Silent	SNP	A	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr8:76465282A>C	uc003yaq.2	+	6	624	c.354A>C	c.(352-354)TCA>TCC	p.S118S	HNF4G_uc003yar.2_Silent_p.S155S	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	118					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			ACTAGATCTCAGTCTCAAGCC	0.353													3	19					0	0	0.004672	0	0
TMEM74	157753	broad.mit.edu	37	8	109796516	109796516	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr8:109796516G>C	uc003ymy.1	-	2	917	c.812C>G	c.(811-813)TCT>TGT	p.S271C	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	271					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			GAGTTTTGCAGACTCTTTGGA	0.488													5	43					0	0	0.014758	0	0
ADCY8	114	broad.mit.edu	37	8	131916183	131916183	+	Silent	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr8:131916183G>A	uc003ytd.3	-	7	2002	c.1746C>T	c.(1744-1746)ATC>ATT	p.I582I	ADCY8_uc010mds.2_Silent_p.I582I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	582	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGTAAGTTTCGATATTATGCT	0.478										HNSCC(32;0.087)			11	122					0	0	0.013537	0	0
SHARPIN	81858	broad.mit.edu	37	8	145153831	145153831	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr8:145153831T>A	uc003zba.2	-	8	1598	c.1114A>T	c.(1114-1116)AGC>TGC	p.S372C	SHARPIN_uc003zbb.2_RNA	NM_030974	NP_112236	Q9H0F6	SHRPN_HUMAN	shank-interacting protein-like 1	372	RanBP2-type.				negative regulation of inflammatory response|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein linear polyubiquitination|regulation of CD40 signaling pathway|regulation of tumor necrosis factor-mediated signaling pathway	cytosol|LUBAC complex	polyubiquitin binding|zinc ion binding			ovary(1)	1	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.1e-42)|Epithelial(56;1.58e-40)|all cancers(56;6.12e-36)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTCTGGGTGCTACACATCTCA	0.632													5	30					0	0	0.021553	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39140536	39140536	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr9:39140536A>T	uc004abi.2	-	12	2095	c.1856T>A	c.(1855-1857)CTT>CAT	p.L619H	CNTNAP3_uc004abj.2_Missense_Mutation_p.L619H|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.L619H|CNTNAP3_uc011lqs.1_Missense_Mutation_p.L526H|CNTNAP3_uc004abl.1_Missense_Mutation_p.L438H	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	619	Fibrinogen C-terminal.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GCAGTACACAAGAAATGGTCC	0.438													6	61					0	0	0.029380	0	0
NUP214	8021	broad.mit.edu	37	9	134038526	134038526	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr9:134038526T>C	uc004cag.2	+	19	2800	c.2689T>C	c.(2689-2691)TCC>CCC	p.S897P	NUP214_uc004cah.2_Missense_Mutation_p.S887P|NUP214_uc004cai.2_Missense_Mutation_p.S327P|NUP214_uc004caf.1_Missense_Mutation_p.S886P|NUP214_uc010mzf.2_Missense_Mutation_p.S195P	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	897	11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		GTGGAGCCTGTCCTCGGCTGT	0.468			T	DEK|SET|ABL1	AML|T-ALL								5	65					0	0	0.014758	0	0
ARRDC1	92714	broad.mit.edu	37	9	140507428	140507428	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr9:140507428T>A	uc004cns.2	+	2	273	c.199T>A	c.(199-201)TTC>ATC	p.F67I	ARRDC1_uc004cnt.2_5'UTR|ARRDC1_uc004cnu.2_RNA|ARRDC1_uc004cnv.2_Intron|ARRDC1_uc004cnw.2_5'UTR|ARRDC1_uc004cnp.1_Missense_Mutation_p.F67I|ARRDC1_uc004cnq.1_Missense_Mutation_p.F67I|ARRDC1_uc011mfb.1_5'UTR|ARRDC1_uc004cnx.1_5'UTR|ARRDC1_uc004cny.2_5'Flank	NM_152285	NP_689498	Q8N5I2	ARRD1_HUMAN	arrestin domain containing 1	67											0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000273)|Epithelial(140;0.000464)		GGAGGGTTACTTCAACAGTTC	0.602													3	23					0	0	0.009096	0	0
CCNB3	85417	broad.mit.edu	37	X	50094673	50094673	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chrX:50094673G>C	uc004dox.3	+	13	4457	c.4159G>C	c.(4159-4161)GAT>CAT	p.D1387H	CCNB3_uc004doy.2_Missense_Mutation_p.D1387H|CCNB3_uc004doz.2_Missense_Mutation_p.D283H|CCNB3_uc010njq.2_Missense_Mutation_p.D279H|CCNB3_uc004dpa.2_Missense_Mutation_p.D226H	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1387					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TTTGAACTGTGATTGTGAGGC	0.458													4	22					0	0	0.014758	0	0
ATG4A	115201	broad.mit.edu	37	X	107381181	107381181	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chrX:107381181G>A	uc004enr.2	+	8	818	c.695G>A	c.(694-696)GGC>GAC	p.G232D	ATG4A_uc004ent.2_Intron|ATG4A_uc004ens.2_Missense_Mutation_p.G148D|ATG4A_uc011msl.1_Intron|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Missense_Mutation_p.G148D	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	232					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						CTTCGCCTGGGCATAAACCAA	0.522													4	130					0	0	0.014758	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1605880	1605882	+	In_Frame_Del	DEL	GCC	-	-			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chr11:1605880_1605882delGCC	uc001ltu.1	-	1	632_634	c.598_600delGGC	c.(598-600)GGCdel	p.G200del	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	200	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGCCCCCACAGCCGGAGCCACAA	0.665													11	111	---	---	---	---					
PLP1	5354	broad.mit.edu	37	X	103041638	103041639	+	Frame_Shift_Ins	INS	-	TA	TA			TCGA-D3-A3BZ-06A-12D-A196-08	TCGA-D3-A3BZ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ca03fc4-5f10-420a-8260-4af6e9650b86	e5d30ad9-ea36-4409-9fda-bb52ab23603a	g.chrX:103041638_103041639insTA	uc010nov.2	+	4	716_717	c.436_437insTA	c.(436-438)CTAfs	p.L146fs	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Frame_Shift_Ins_p.L146fs|PLP1_uc004elj.2_Intron|PLP1_uc011msf.1_Frame_Shift_Ins_p.L91fs|PLP1_uc010now.1_Frame_Shift_Ins_p.L150fs|PLP1_uc010nox.2_Frame_Shift_Ins_p.L100fs	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	146	Cytoplasmic (Probable).		Missing (in HLD1).		cell death|synaptic transmission	integral to membrane				ovary(1)	1						GGGAAAATGGCTAGGACATCCC	0.564													26	77	---	---	---	---					
