Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FAM41C	284593	broad.mit.edu	37	1	809712	809712	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:809712G>A	uc001abt.3	-	2		c.881C>T				NR_027055				Homo sapiens family with sequence similarity 41, member C, mRNA (cDNA clone IMAGE:5201580), partial cds.												0						GGAGTATGCTGAGGAGGAGGT	0.493													15	64					0	0	0.004007	0	0
FAM41C	284593	broad.mit.edu	37	1	809736	809736	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:809736C>T	uc001abt.3	-	2		c.857G>A				NR_027055				Homo sapiens family with sequence similarity 41, member C, mRNA (cDNA clone IMAGE:5201580), partial cds.												0						CTAGAATTTTCCTTTTCTAGG	0.483													30	35					0	0	0.006320	0	0
SAMD11	148398	broad.mit.edu	37	1	879473	879474	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:879473_879474GG>CA	uc001abw.1	+	14	2066_2067	c.1986_1987GG>CA	c.(1984-1989)CAGGAG>CACAAG	p.662_663QE>HK	SAMD11_uc001abx.1_Missense_Mutation_p.525_526QE>HK	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	662_663						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CACCCAAGCAGGAGAATGGGAC	0.649													9	64					0	0	0.004672	0	0
PLEKHN1	84069	broad.mit.edu	37	1	908910	908910	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:908910G>A	uc001ace.2	+	12	1515	c.1480G>A	c.(1480-1482)GAT>AAT	p.D494N	PLEKHN1_uc001acd.2_Missense_Mutation_p.D442N|PLEKHN1_uc001acf.2_Missense_Mutation_p.D407N	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	494											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		GAGCAGCCCAGATGCCCCTGA	0.627													39	32					0	0	0.002222	0	0
ATAD3C	219293	broad.mit.edu	37	1	1391200	1391200	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:1391200C>T	uc001aft.2	+	6	1463	c.468C>T	c.(466-468)ATC>ATT	p.I156I		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	156							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TGCGCGACATCGCCATAATGA	0.627													6	22					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	1	1854427	1854427	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:1854427C>T	uc001aik.2	-	9	1528	c.678G>A	c.(676-678)AAG>AAA	p.K226K	uc001ail.2_Silent_p.K226K					RecName: Full=Uncharacterized protein C1orf222;																		TGGGCACCTTCTTTGGAGATG	0.672													32	55					0	0	0.003755	0	0
KIAA1751	85452	broad.mit.edu	37	1	1918470	1918470	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:1918470C>T	uc001aim.1	-	5	457	c.301G>A	c.(301-303)GAG>AAG	p.E101K	KIAA1751_uc009vkz.1_Missense_Mutation_p.E101K|KIAA1751_uc001ain.1_Missense_Mutation_p.E101K	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	101										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GCGCGCAGCTCCCCTCTGGAA	0.617													18	34					0	0	0.007413	0	0
KIAA0495	57212	broad.mit.edu	37	1	3662421	3662421	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:3662421G>A	uc009vlm.2	-	1	1466	c.347C>T	c.(346-348)CCC>CTC	p.P116L	KIAA0495_uc001akt.3_RNA	NM_207306	NP_997189			hypothetical protein LOC57212 precursor												0	all_cancers(77;0.0338)|Ovarian(185;0.0634)|Lung NSC(156;0.172)|all_lung(157;0.182)	all_epithelial(116;1.83e-21)|all_lung(118;2e-08)|Lung NSC(185;7.5e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;1.27e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.43e-22)|GBM - Glioblastoma multiforme(42;3.69e-16)|Colorectal(212;1.21e-05)|COAD - Colon adenocarcinoma(227;5.87e-05)|Kidney(185;0.000367)|BRCA - Breast invasive adenocarcinoma(365;0.000704)|KIRC - Kidney renal clear cell carcinoma(229;0.00567)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.204)		GCCTCCTCCGGGGAGCACCCT	0.617													5	16					0	0	0.000602	0	0
CCDC27	148870	broad.mit.edu	37	1	3673304	3673304	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:3673304C>T	uc001akv.2	+	4	642	c.561C>T	c.(559-561)CTC>CTT	p.L187L		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	187										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		CAGGGTACCTCCTTCCCTTCA	0.557													46	52					0	0	0.003610	0	0
AJAP1	55966	broad.mit.edu	37	1	4772338	4772338	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:4772338C>T	uc001alm.1	+	2	789	c.408C>T	c.(406-408)TCC>TCT	p.S136S	AJAP1_uc001aln.2_Silent_p.S136S	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	136	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CGTCCTCGTCCTCGTCCTCCG	0.721													5	5					0	0	0.001168	0	0
ACOT7	11332	broad.mit.edu	37	1	6354942	6354942	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:6354942G>A	uc001ams.2	-	7	998	c.841C>T	c.(841-843)CAT>TAT	p.H281Y	ACOT7_uc010nzq.1_Missense_Mutation_p.H166Y|ACOT7_uc001amt.2_Missense_Mutation_p.H271Y|ACOT7_uc001amu.2_RNA|ACOT7_uc001amv.2_RNA|ACOT7_uc001amq.2_Missense_Mutation_p.H230Y|ACOT7_uc001amr.2_Missense_Mutation_p.H251Y	NM_181864	NP_863654	O00154	BACH_HUMAN	acyl-CoA thioesterase 7 isoform hBACHb	281	Acyl coenzyme A hydrolase 2.					mitochondrion|nucleus	carboxylesterase activity|fatty-acyl-CoA binding|palmitoyl-CoA hydrolase activity				0	Ovarian(185;0.0634)|all_lung(157;0.175)	all_cancers(23;1.42e-38)|all_epithelial(116;3.96e-23)|all_lung(118;3.69e-08)|Lung NSC(185;8.52e-07)|all_hematologic(16;6.92e-06)|Colorectal(325;4.53e-05)|Acute lymphoblastic leukemia(12;5e-05)|all_neural(13;0.000164)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;9.16e-37)|GBM - Glioblastoma multiforme(13;5.89e-29)|OV - Ovarian serous cystadenocarcinoma(86;7.63e-19)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;2.06e-05)|Kidney(185;7.74e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00129)|BRCA - Breast invasive adenocarcinoma(365;0.00132)|STAD - Stomach adenocarcinoma(132;0.00195)|READ - Rectum adenocarcinoma(331;0.0481)		ATCTTGTCATGAAAATTAATG	0.537													12	49					0	0	0.003163	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724071	7724071	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:7724071C>T	uc001aoi.2	+	9	1671	c.1464C>T	c.(1462-1464)TTC>TTT	p.F488F		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	488					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CCGACTGTTTCCTTAATAACC	0.607													20	48					0	0	0.001523	0	0
RERE	473	broad.mit.edu	37	1	8420722	8420722	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:8420722G>A	uc001ape.2	-	19	3655	c.2845C>T	c.(2845-2847)CCC>TCC	p.P949S	RERE_uc001apf.2_Missense_Mutation_p.P949S|RERE_uc010nzx.1_Missense_Mutation_p.P681S|RERE_uc001apd.2_Missense_Mutation_p.P395S	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	949	Pro-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GAGAGGTGGGGAGGGTGCTTG	0.697													32	46					0	0	0.004878	0	0
SLC2A5	6518	broad.mit.edu	37	1	9097825	9097825	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:9097825G>A	uc001apo.2	-	12	1618	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F	SLC2A5_uc010nzy.1_Silent_p.F383F|SLC2A5_uc010nzz.1_Silent_p.F327F|SLC2A5_uc010oaa.1_Silent_p.F398F|SLC2A5_uc010oab.1_Silent_p.F442F	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	442	Helical; Name=12; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CGAAGACAATGAAGCTGTACG	0.572													15	42					0	0	0.003163	0	0
H6PD	9563	broad.mit.edu	37	1	9323951	9323951	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:9323951C>T	uc001apt.2	+	5	1672	c.1399C>T	c.(1399-1401)CAT>TAT	p.H467Y		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	467	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	CCATATCTTCCATGGCCGGAA	0.602													75	59					0	0	0.003610	0	0
SPSB1	80176	broad.mit.edu	37	1	9416449	9416450	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:9416449_9416450CC>TT	uc010oae.1	+	2	838_839	c.499_500CC>TT	c.(499-501)CCA>TTA	p.P167L	SPSB1_uc001apv.2_Missense_Mutation_p.P167L	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	167	B30.2/SPRY.				intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		CTTTCTGGAACCAGATGAGACA	0.559													15	74					0	0	0.004672	0	0
PGD	5226	broad.mit.edu	37	1	10479548	10479548	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:10479548C>T	uc001arc.2	+	12	1374	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	PGD_uc001ard.2_Silent_p.S348S|PGD_uc010oak.1_Silent_p.S406S|PGD_uc010oal.1_Silent_p.S415S	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	428					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		CTGCCCTCTCCTTCTATGACG	0.622													33	37					0	0	0.002096	0	0
C1orf127	148345	broad.mit.edu	37	1	11017713	11017713	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:11017713G>A	uc010oao.1	-	3	211	c.206C>T	c.(205-207)ACC>ATC	p.T69I	C1orf127_uc001arr.1_Missense_Mutation_p.T69I|C1orf127_uc001ars.1_Missense_Mutation_p.T69I	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	69										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		GCTTTGGACGGTGACAGTGGT	0.607													9	47					0	0	0.006214	0	0
MTOR	2475	broad.mit.edu	37	1	11199665	11199666	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:11199665_11199666GG>AA	uc001asd.2	-	35	5043_5044	c.4922_4923CC>TT	c.(4921-4923)TCC>TTT	p.S1641F		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1641	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TGACCACAAGGGACCGCACCAT	0.495													42	61					0	0	0.004672	0	0
MTOR	2475	broad.mit.edu	37	1	11264758	11264758	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:11264758G>A	uc001asd.2	-	26	3925	c.3804C>T	c.(3802-3804)GCC>GCT	p.A1268A		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1268					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CAGCGCCCCAGGCCTGTGATC	0.488													4	15					0	0	0.001168	0	0
MTOR	2475	broad.mit.edu	37	1	11273516	11273516	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:11273516G>A	uc001asd.2	-	21	3346	c.3225C>T	c.(3223-3225)ATC>ATT	p.I1075I		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1075	HEAT 5.			I -> S (in Ref. 2; AAC39933).	cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GCATGTGTGGGATCAGCTGGG	0.488													38	31					0	0	0.005524	0	0
UBIAD1	29914	broad.mit.edu	37	1	11346060	11346060	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:11346060G>A	uc001asg.2	+	2	1223	c.889G>A	c.(889-891)GAG>AAG	p.E297K		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	297	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		CTTCTCCCTTGAGAGACAGTT	0.557													23	86					0	0	0.002780	0	0
PTCHD2	57540	broad.mit.edu	37	1	11591051	11591051	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:11591051G>A	uc001ash.3	+	16	3328	c.3190G>A	c.(3190-3192)GAG>AAG	p.E1064K		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1064	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		AGCCAACTCCGAGCTGGTGAA	0.612													67	64					0	0	0.003610	0	0
VPS13D	55187	broad.mit.edu	37	1	12316509	12316509	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:12316509C>T	uc001atv.2	+	8	930	c.789C>T	c.(787-789)CCC>CCT	p.P263P	VPS13D_uc001atw.2_Silent_p.P263P	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	263					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GGCACAGTCCCCGTATTGATT	0.502													59	84					0	0	0.003610	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835203	12835203	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:12835203C>T	uc001aui.2	+	1	220	c.193C>T	c.(193-195)CCT>TCT	p.P65S		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	65										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCTGCCTTCCTCTAGGGTC	0.577													38	25					0	0	0.004878	0	0
LOC649330	649330	broad.mit.edu	37	1	12907949	12907949	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:12907949G>A	uc009vno.2	-	1	289	c.194C>T	c.(193-195)GCT>GTT	p.A65V	HNRNPCL1_uc010obf.1_Missense_Mutation_p.A65V	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	65							nucleic acid binding|nucleotide binding				0						TGCTACAGCAGCCCGGGCATT	0.483													15	64					0	0	0.004990	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979744	12979744	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:12979744C>T	uc001aup.2	+	4	1019	c.936C>T	c.(934-936)CTC>CTT	p.L312L		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	312											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGAAGCATCTCTCTTGGTGCC	0.567													9	62					0	0	0.008291	0	0
PRAMEF22	653606	broad.mit.edu	37	1	13036637	13036637	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:13036637C>T	uc009vnq.1	+	2	709	c.709C>T	c.(709-711)CGC>TGC	p.R237C	PRAMEF5_uc001aur.2_Intron	NM_001100631	NP_001094101	A3QJZ6	PRA22_HUMAN	PRAME family member 22	237											0						GAGGAATCTTCGCAAACTCTT	0.473													26	101					0	0	0.001786	0	0
CLCNKB	1188	broad.mit.edu	37	1	16374527	16374527	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:16374527C>T	uc001axw.3	+	5	566	c.486C>T	c.(484-486)TTC>TTT	p.F162F	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.F162F|CLCNKB_uc001axy.3_5'Flank	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	162	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		GCACCCTCTTCCTCGGGAAAG	0.622													8	23					0	0	0.003080	0	0
NBPF1	55672	broad.mit.edu	37	1	16892177	16892177	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:16892177G>A	uc009vos.1	-	28	4128	c.3240C>T	c.(3238-3240)TCC>TCT	p.S1080S	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1080	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		ATGCATAAAAGGAACTTCCAT	0.448													28	899					0	0	0.001882	0	0
NBPF1	55672	broad.mit.edu	37	1	16893772	16893772	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:16893772G>A	uc009vos.1	-	26	3854	c.2966C>T	c.(2965-2967)CCT>CTT	p.P989L	NBPF1_uc009vot.1_Missense_Mutation_p.P372L|NBPF1_uc001ayz.1_Missense_Mutation_p.P372L|NBPF1_uc010oce.1_Missense_Mutation_p.P643L	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	989	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		ATAACCTGAAGGAGTTGAATA	0.483													11	804					0	0	0.001368	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418													3	33					0	0	0.004672	0	0
CROCCL1	84809	broad.mit.edu	37	1	16945403	16945403	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:16945403G>A	uc010ocf.1	-	4		c.754C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GAAACCGCGGGATAGCTCGGT	0.597													5	18					0	0	0.000602	0	0
ESPNP	284729	broad.mit.edu	37	1	17023188	17023188	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:17023188G>A	uc001azn.1	-	10	1676	c.1562C>T	c.(1561-1563)CCC>CTC	p.P521L		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CGGCCAATCGGGCTGCAGGGA	0.692													4	17					0	0	0.000602	0	0
PADI4	23569	broad.mit.edu	37	1	17657566	17657566	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:17657566C>T	uc001baj.2	+	2	223	c.195C>T	c.(193-195)TCC>TCT	p.S65S	PADI4_uc009vpc.2_Silent_p.S65S	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	65					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CCACAGGTTCCTCCACATGGC	0.607													10	30					0	0	0.008291	0	0
PADI6	353238	broad.mit.edu	37	1	17725327	17725327	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:17725327C>T	uc001bak.1	+	16	1835	c.1835C>T	c.(1834-1836)CCA>CTA	p.P612L		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	604					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TTTGCGAGGCCATACTTCCCT	0.602													16	25					0	0	0.001523	0	0
ACTL8	81569	broad.mit.edu	37	1	18149783	18149783	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:18149783G>A	uc001bat.2	+	2	496	c.280G>A	c.(280-282)GAG>AAG	p.E94K		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	94						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		ACGGGAGCAAGAGGTCCCCCC	0.617													23	19					0	0	0.003330	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809329	18809329	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:18809329C>T	uc001bax.2	+	1	1906	c.1854C>T	c.(1852-1854)CTC>CTT	p.L618L	KLHDC7A_uc009vpg.2_Silent_p.L400L	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	618	Kelch 4.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCGCCGCTCCCCAGTGACA	0.672													17	16					0	0	0.001523	0	0
TAS1R2	80834	broad.mit.edu	37	1	19180918	19180918	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:19180918G>A	uc001bba.1	-	3	1047	c.1046C>T	c.(1045-1047)CCC>CTC	p.P349L		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	349	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CCTGCTGAGGGGTGGCGGCCC	0.637													14	14					0	0	0.004007	0	0
HSPG2	3339	broad.mit.edu	37	1	22150814	22150814	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:22150814C>T	uc001bfj.2	-	94	12840	c.12800G>A	c.(12799-12801)GGG>GAG	p.G4267E	LDLRAD2_uc001bfg.1_3'UTR|HSPG2_uc001bfi.2_Missense_Mutation_p.G284E|HSPG2_uc009vqd.2_Missense_Mutation_p.G4268E	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	4267	Laminin G-like 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GACAAGGTGCCCGTCTTGAAG	0.657													38	51					0	0	0.006999	0	0
C1QB	713	broad.mit.edu	37	1	22987852	22987852	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:22987852C>T	uc001bgd.2	+	3	867	c.735C>T	c.(733-735)TTC>TTT	p.F245F		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	245	C1q.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TTTCCGGGTTCCTGCTCTTTC	0.602													11	34					0	0	0.001368	0	0
EPHB2	2048	broad.mit.edu	37	1	23233345	23233345	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:23233345C>T	uc009vqj.1	+	11	2176	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	EPHB2_uc001bge.2_Silent_p.F678F|EPHB2_uc001bgf.2_Silent_p.F677F|EPHB2_uc010odu.1_Silent_p.F619F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	677	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		TGGGCCAGTTCGACCATCCCA	0.567									Hereditary_Prostate_Cancer				5	25					0	0	0.000602	0	0
CNKSR1	10256	broad.mit.edu	37	1	26507009	26507009	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:26507009C>T	uc001bln.3	+	2	176	c.118C>T	c.(118-120)CAG>TAG	p.Q40*	CNKSR1_uc010oex.1_RNA|CNKSR1_uc001blm.3_Nonsense_Mutation_p.Q40*|CNKSR1_uc009vsd.2_5'UTR|CNKSR1_uc009vse.2_5'UTR|CNKSR1_uc001blo.2_5'UTR	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	40	SAM.				Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GAACCTGCTCCAGCTCTGCCC	0.632													21	60					0	0	0.002299	0	0
FGR	2268	broad.mit.edu	37	1	27949640	27949640	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:27949640A>C	uc001boj.2	-	2	388	c.242T>G	c.(241-243)CTG>CGG	p.L81R	FGR_uc001bok.2_Missense_Mutation_p.L81R|FGR_uc001bol.2_Missense_Mutation_p.L81R|FGR_uc001bom.2_Missense_Mutation_p.L81R	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	81	SH3.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GGCAATGAACAGGGTCACCCC	0.562													22	16					0	0	0.002780	0	0
FAM76A	199870	broad.mit.edu	37	1	28075618	28075618	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:28075618C>T	uc001boq.2	+	6	654	c.552C>T	c.(550-552)ATC>ATT	p.I184I	FAM76A_uc009vtb.2_Silent_p.I184I|FAM76A_uc001bor.2_Silent_p.I218I|FAM76A_uc001bos.2_Intron|FAM76A_uc001bot.2_Intron|FAM76A_uc010ofm.1_Intron	NM_152660	NP_689873	Q8TAV0	FA76A_HUMAN	hypothetical protein LOC199870 isoform 3	184											0		Colorectal(325;0.000147)|all_lung(284;0.00181)|Lung NSC(340;0.00278)|Renal(390;0.00357)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-24)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00253)|KIRC - Kidney renal clear cell carcinoma(1967;0.00292)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)		AAAATGAAATCCCAAAGAAAA	0.358													6	14					0	0	0.001984	0	0
EYA3	2140	broad.mit.edu	37	1	28354386	28354386	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:28354386G>T	uc001bpi.1	-	7	578	c.413C>A	c.(412-414)TCT>TAT	p.S138Y	EYA3_uc010ofs.1_Missense_Mutation_p.S85Y|EYA3_uc010oft.1_Intron|EYA3_uc001bpj.2_Intron|EYA3_uc001bpk.1_RNA|EYA3_uc010ofu.1_Intron	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	138					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		TTGACTTGGAGATGGAGTCTG	0.438													40	60					6.7651e-33	9.38801e-33	0.003610	1	0
PHACTR4	65979	broad.mit.edu	37	1	28800315	28800315	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:28800315C>T	uc001bpw.2	+	7	1355	c.1073C>T	c.(1072-1074)ACC>ATC	p.T358I	PHACTR4_uc001bpv.1_RNA|PHACTR4_uc001bpx.2_Missense_Mutation_p.T342I|PHACTR4_uc001bpy.2_Missense_Mutation_p.T368I	NM_001048183	NP_001041648	Q8IZ21	PHAR4_HUMAN	phosphatase and actin regulator 4 isoform 1	358	Pro-rich.						actin binding|protein phosphatase inhibitor activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;7.01e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;1.35e-21)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0144)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCCACGCACCCCTCCATTC	0.512													52	69					0	0	0.003610	0	0
EPB41	2035	broad.mit.edu	37	1	29319891	29319891	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:29319891G>A	uc001brm.1	+	2	525	c.518G>A	c.(517-519)GGA>GAA	p.G173E	EPB41_uc001brg.1_5'UTR|EPB41_uc001brh.1_5'UTR|EPB41_uc001bri.1_Missense_Mutation_p.G173E|EPB41_uc001brj.1_5'UTR|EPB41_uc009vtk.1_Missense_Mutation_p.G173E|EPB41_uc001brk.2_Missense_Mutation_p.G173E|EPB41_uc001brl.1_Missense_Mutation_p.G173E|EPB41_uc009vtl.1_5'UTR|EPB41_uc009vtm.1_Intron	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	173					blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		ATTAAGGAAGGAGAAGGACTT	0.368													79	91					0	0	0.003610	0	0
BAI2	576	broad.mit.edu	37	1	32196485	32196485	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:32196485G>A	uc001btn.2	-	29	4650	c.4296C>T	c.(4294-4296)GCC>GCT	p.A1432A	BAI2_uc001btm.2_Silent_p.A426A|BAI2_uc001btp.1_Silent_p.A426A|BAI2_uc010ogn.1_Silent_p.A402A|BAI2_uc010ogo.1_Silent_p.A1041A|BAI2_uc010ogp.1_Silent_p.A1365A|BAI2_uc010ogq.1_Silent_p.A1399A|BAI2_uc001bto.2_Silent_p.A1432A	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1432	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GCACTTGGCGGGCGCTGGGTG	0.677													39	35					0	0	0.002852	0	0
BAI2	576	broad.mit.edu	37	1	32205771	32205771	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:32205771G>A	uc001btn.2	-	13	2352	c.1998C>T	c.(1996-1998)TTC>TTT	p.F666F	BAI2_uc010ogo.1_Silent_p.F308F|BAI2_uc010ogp.1_Silent_p.F599F|BAI2_uc010ogq.1_Silent_p.F666F|BAI2_uc001bto.2_Silent_p.F666F|BAI2_uc001btq.1_Silent_p.F599F|BAI2_uc010ogr.1_Intron	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	666	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TCACCACCTGGAAGAAGCGCT	0.612													13	31					0	0	0.001855	0	0
CSMD2	114784	broad.mit.edu	37	1	34008398	34008398	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:34008398C>T	uc001bxn.1	-	57	8796	c.8767G>A	c.(8767-8769)GGA>AGA	p.G2923R	CSMD2_uc001bxm.1_Missense_Mutation_p.G3067R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2923	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCGTAGTATCCTTCCCGGCAC	0.577													8	26					0	0	0.003080	0	0
CSMD2	114784	broad.mit.edu	37	1	34208974	34208974	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:34208974G>A	uc001bxn.1	-	14	1989	c.1960C>T	c.(1960-1962)CCC>TCC	p.P654S	CSMD2_uc001bxm.1_Missense_Mutation_p.P694S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	654	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATGGAGGAGGGAAGCTGGTTT	0.582													10	45					0	0	0.006214	0	0
RSPO1	284654	broad.mit.edu	37	1	38079859	38079859	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:38079859G>A	uc001cbl.1	-	6	1221	c.433C>T	c.(433-435)CCT>TCT	p.P145S	RSPO1_uc001cbm.1_Missense_Mutation_p.P145S|RSPO1_uc009vvf.1_Missense_Mutation_p.P118S|RSPO1_uc009vvg.1_Missense_Mutation_p.P145S	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	145					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGCTTACCAGGACTACTGCAC	0.632													9	7					0	0	0.004482	0	0
MACF1	23499	broad.mit.edu	37	1	39800121	39800121	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:39800121C>T	uc010oiu.1	+	1	3312	c.3181C>T	c.(3181-3183)CCC>TCC	p.P1061S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2626					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CATTGTAGATCCCGAGAACTG	0.393													24	24					0	0	0.004656	0	0
MYCL1	4610	broad.mit.edu	37	1	40363564	40363564	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:40363564C>T	uc001cer.1	-	3	792	c.575G>A	c.(574-576)CGA>CAA	p.R192Q	MYCL1_uc001ces.1_Missense_Mutation_p.R192Q	NM_001033082	NP_001028254	P12524	MYCL1_HUMAN	l-myc-1 proto-oncogene isoform 1	192						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|liver(1)	2	all_cancers(7;1.73e-14)|all_lung(5;2.77e-17)|all_epithelial(6;6.81e-17)|Lung SC(1;2.85e-13)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.51e-19)|Epithelial(16;3.36e-18)|all cancers(16;8.43e-17)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GGGGTCTGCTCGCACCGTGAT	0.507			A		small cell lung 								47	37					0	0	0.003610	0	0
ZNF643	65243	broad.mit.edu	37	1	40928671	40928671	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:40928671G>A	uc001cfn.1	+	5	1312	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	ZNF643_uc001cfl.1_Missense_Mutation_p.E237K|ZNF643_uc001cfm.1_Missense_Mutation_p.E205K	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	339	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			TGAATGTAAGGAGTGTGGGAA	0.413													19	24					0	0	0.008871	0	0
ZNF684	127396	broad.mit.edu	37	1	41012620	41012620	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:41012620C>T	uc001cft.1	+	5	876	c.625C>T	c.(625-627)CAT>TAT	p.H209Y		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	209	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			TCAGAAAATTCATAATGGAGA	0.428													14	16					0	0	0.004007	0	0
KIF2C	11004	broad.mit.edu	37	1	45223287	45223287	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:45223287C>T	uc001cmg.3	+	11	1152	c.1037C>T	c.(1036-1038)GCA>GTA	p.A346V	KIF2C_uc010olb.1_Missense_Mutation_p.A305V|KIF2C_uc010olc.1_Missense_Mutation_p.A233V|KIF2C_uc001cmh.3_Missense_Mutation_p.A292V	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	346	Kinesin-motor.				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACTTGTTTTGCATATGGCCAG	0.493													27	24					0	0	0.001786	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47366085	47366085	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:47366085C>T	uc001cqo.1	-	1		c.63G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GCCATGAGTTCCTGAAGCCAG	0.537													5	2					0	0	0.000602	0	0
CYP4A11	1579	broad.mit.edu	37	1	47399661	47399661	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:47399661G>A	uc001cqp.3	-	9	1230	c.1179C>T	c.(1177-1179)CTC>CTT	p.L393L	CYP4A11_uc001cqq.2_Silent_p.L393L|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	393					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	CGGGAGTGCTGAGCTCTCTGC	0.577													16	20					0	0	0.004990	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47548030	47548030	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:47548030G>A	uc001cqu.1	+	4	392	c.389G>A	c.(388-390)GGT>GAT	p.G130D		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	130	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						ACCCTGGATGGTTCTAAATGG	0.453													21	20					0	0	0.001523	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610066	47610066	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:47610066G>A	uc001cqv.1	+	7	879	c.828G>A	c.(826-828)AAG>AAA	p.K276K	CYP4A22_uc009vyo.2_Silent_p.K276K|CYP4A22_uc009vyp.2_Missense_Mutation_p.G225R	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	276			K -> T (in allele CYP4A22*8, allele CYP4A22*11, allele CYP4A22*14 and allele CYP4A22*15).			endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						AACTACAGAAGGAGGGGGAGC	0.532													25	52					0	0	0.003755	0	0
SPATA6	54558	broad.mit.edu	37	1	48865252	48865252	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:48865252G>C	uc001crr.1	-	7	716	c.551C>G	c.(550-552)TCA>TGA	p.S184*	SPATA6_uc001crs.1_Nonsense_Mutation_p.S184*|SPATA6_uc010omv.1_Nonsense_Mutation_p.S170*|SPATA6_uc001crt.2_Nonsense_Mutation_p.S76*	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	184					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						TTGTGATCTTGATGTTCTGTT	0.313													7	21					0	0	0.001984	0	0
AGBL4	84871	broad.mit.edu	37	1	49056532	49056532	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:49056532G>A	uc001cru.2	-	10	1235	c.1077C>T	c.(1075-1077)CTC>CTT	p.L359L	AGBL4_uc010omw.1_Silent_p.L92L|AGBL4_uc010omx.1_Silent_p.L371L|AGBL4_uc001crv.1_Silent_p.L212L|AGBL4_uc010omy.1_Silent_p.L182L	NM_032785	NP_116174	Q5VU57	CBPC6_HUMAN	ATP/GTP binding protein-like 4	359					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2				Colorectal(2;0.00349)|COAD - Colon adenocarcinoma(2;0.0037)		CATTCTGGCAGAGGAGCTTGG	0.547													4	3					0	0	0.000602	0	0
C1orf175	374977	broad.mit.edu	37	1	55148383	55148383	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:55148383C>T	uc010ooe.1	+	14	2760	c.2436C>T	c.(2434-2436)GTC>GTT	p.V812V	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.V380V|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.V330V|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.V812V|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_Intron|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.V14V	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	812						integral to membrane	binding				0						GCTGTGATGTCCGAGACCTCC	0.612													22	33					0	0	0.002780	0	0
C8B	732	broad.mit.edu	37	1	57395138	57395138	+	Missense_Mutation	SNP	G	A	A	rs140422613		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:57395138G>A	uc001cyp.2	-	12	1782	c.1715C>T	c.(1714-1716)CCT>CTT	p.P572L	C8B_uc010oon.1_Missense_Mutation_p.P510L|C8B_uc010ooo.1_Missense_Mutation_p.P520L	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	572	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ATTTTGAGGAGGTGGATTGTT	0.483													8	25					0	0	0.006214	0	0
C1orf87	127795	broad.mit.edu	37	1	60499180	60499180	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:60499180G>A	uc001czs.1	-	7	1089	c.997C>T	c.(997-999)CGC>TGC	p.R333C		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	333							calcium ion binding			ovary(1)|breast(1)	2						GAGAACGAGCGATCTTCTTTT	0.433													34	50					0	0	0.003755	0	0
L1TD1	54596	broad.mit.edu	37	1	62676049	62676049	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:62676049G>A	uc001dae.3	+	4	1905	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	535	Poly-Glu.									ovary(1)|skin(1)	2						AACCCAGGAGGAAGAGGAAAC	0.473													10	14					0	0	0.006214	0	0
LEPR	3953	broad.mit.edu	37	1	66102189	66102189	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:66102189G>A	uc001dci.2	+	20	3191	c.2989G>A	c.(2989-2991)GAA>AAA	p.E997K	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	997	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TAAACCAAGTGAAACTGGTGA	0.438													9	23					0	0	0.006214	0	0
SGIP1	84251	broad.mit.edu	37	1	67147693	67147693	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:67147693C>T	uc001dcr.2	+	15	1173	c.956C>T	c.(955-957)TCC>TTC	p.S319F	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.S86F	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	319	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TCTGATACATCCCCGGAACAT	0.512													28	87					0	0	0.008361	0	0
RPE65	6121	broad.mit.edu	37	1	68912463	68912463	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:68912463G>A	uc001dei.1	-	3	229	c.175C>T	c.(175-177)CAC>TAC	p.H59Y		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	59					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TCAAACAGGTGGTAAAATGGC	0.527													30	27					0	0	0.008361	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74621505	74621505	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:74621505A>C	uc001dfy.3	-	4	811	c.619T>G	c.(619-621)TCA>GCA	p.S207A	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	207										ovary(2)	2						TTAATTTTTGAAGTAATATGT	0.244													22	16					0	0	0.003954	0	0
C1orf173	127254	broad.mit.edu	37	1	75055476	75055476	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:75055476C>T	uc001dgg.2	-	12	2234	c.2015G>A	c.(2014-2016)GGA>GAA	p.G672E	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.G466E	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	672	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTTCTCCGTTCCTTCTTTAAG	0.403													40	48					0	0	0.002522	0	0
CRYZ	1429	broad.mit.edu	37	1	75171991	75171991	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:75171991G>A	uc001dgk.2	-	10	1484	c.979C>T	c.(979-981)CTT>TTT	p.L327F	CRYZ_uc001dgj.2_Missense_Mutation_p.L327F|CRYZ_uc001dgl.2_Missense_Mutation_p.L293F|CRYZ_uc001dgm.2_Missense_Mutation_p.L190F	NM_001130042	NP_001123514	Q08257	QOR_HUMAN	crystallin, zeta isoform a	327					protein homotetramerization|visual perception|xenobiotic catabolic process	cytosol|Golgi apparatus	mRNA 3'-UTR binding|NADPH binding|NADPH:quinone reductase activity|zinc ion binding				0					Dicumarol(DB00266)	CATAAGAGAAGAATCATTTTT	0.373													19	29					0	0	0.003330	0	0
ELTD1	64123	broad.mit.edu	37	1	79404875	79404875	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:79404875T>C	uc001diq.3	-	4	550	c.394A>G	c.(394-396)AAA>GAA	p.K132E		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	132	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CTACTTACTTTTGTTAAAGTT	0.259													7	27					0	0	0.001984	0	0
COL24A1	255631	broad.mit.edu	37	1	86283719	86283719	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:86283719G>A	uc001dlj.2	-	46	3883	c.3841C>T	c.(3841-3843)CCT>TCT	p.P1281S	COL24A1_uc001dli.2_Missense_Mutation_p.P417S|COL24A1_uc010osd.1_Missense_Mutation_p.P581S|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1281	Collagen-like 14.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTACTTACAGGAATCCCAGGT	0.408													47	47					0	0	0.003610	0	0
CLCA3P	9629	broad.mit.edu	37	1	87108233	87108233	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:87108233G>A	uc010osh.1	+	6		c.760G>A				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						CCAGGTGACTGAATTTTGTAC	0.333													11	13					0	0	0.002450	0	0
GBP6	163351	broad.mit.edu	37	1	89846169	89846169	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:89846169G>A	uc001dnf.2	+	6	1124	c.850G>A	c.(850-852)GGA>AGA	p.G284R	GBP6_uc010ost.1_Missense_Mutation_p.G154R	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	284							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		CCTCAGGGAGGGAATCACAGT	0.403													4	18					0	0	0.000602	0	0
BRDT	676	broad.mit.edu	37	1	92446543	92446543	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:92446543C>T	uc001dok.3	+	10	1907	c.1558C>T	c.(1558-1560)CTG>TTG	p.L520L	BRDT_uc001dol.3_Silent_p.L520L|BRDT_uc010osz.1_Silent_p.L524L|BRDT_uc009wdf.2_Silent_p.L447L|BRDT_uc010ota.1_Silent_p.L474L|BRDT_uc010otb.1_Silent_p.L474L|BRDT_uc001dom.3_Silent_p.L520L	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	520					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		GCAGTTAAGTCTGAATATAAA	0.373													21	22					0	0	0.001523	0	0
ABCA4	24	broad.mit.edu	37	1	94520859	94520859	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:94520859G>A	uc001dqh.2	-	16	2499	c.2395C>T	c.(2395-2397)CCG>TCG	p.P799S	ABCA4_uc010otn.1_Missense_Mutation_p.P725S	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	799					phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		AATGCCACCGGAGACAGTAAG	0.567													14	20					0	0	0.003163	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94670745	94670745	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:94670745G>A	uc001dqj.3	-	7	938	c.569C>T	c.(568-570)TCC>TTC	p.S190F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.S190F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	190					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTCTAAAGGGGAAAAATTTCC	0.338													8	15					0	0	0.004482	0	0
VCAM1	7412	broad.mit.edu	37	1	101186235	101186235	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:101186235G>A	uc001dti.2	+	2	388	c.268G>A	c.(268-270)GAA>AAA	p.E90K	VCAM1_uc001dtj.2_Missense_Mutation_p.E90K|VCAM1_uc010ouj.1_Intron	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	90	Ig-like C2-type 1.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	TTTTGGGAACGAACACTCTTA	0.423													5	18					0	0	0.000602	0	0
COL11A1	1301	broad.mit.edu	37	1	103481270	103481270	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:103481270C>T	uc001dul.2	-	12	1760	c.1442G>A	c.(1441-1443)GGG>GAG	p.G481E	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.G493E|COL11A1_uc001dun.2_Missense_Mutation_p.G442E|COL11A1_uc009weh.2_Missense_Mutation_p.G365E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	481	Triple-helical region (interrupted).				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACCATCAGCCCCTGGTAAGCC	0.343													4	10					0	0	0.000602	0	0
VAV3	10451	broad.mit.edu	37	1	108292186	108292186	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:108292186G>A	uc001dvk.1	-	14	1344	c.1290C>T	c.(1288-1290)ATC>ATT	p.I430I	VAV3_uc010ouw.1_Silent_p.I430I|VAV3_uc001dvl.1_Silent_p.I254I|VAV3_uc010oux.1_Silent_p.I430I	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	430	PH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		TCTTACATACGATCACTGCCA	0.303													10	33					0	0	0.001368	0	0
DENND2C	163259	broad.mit.edu	37	1	115130440	115130440	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:115130440G>A	uc001efd.1	-	19	3267	c.2565C>T	c.(2563-2565)TCC>TCT	p.S855S	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Silent_p.S798S	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	855	dDENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGAGGTGTGGGACTTACGGA	0.478													20	26					0	0	0.002780	0	0
AMPD1	270	broad.mit.edu	37	1	115218250	115218250	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:115218250C>T	uc001efe.1	-	12	1664	c.1580G>A	c.(1579-1581)AGT>AAT	p.S527N	AMPD1_uc001eff.1_Missense_Mutation_p.S523N	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	527					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GGGCTTGGGACTCTTGGAGGA	0.468													71	50					0	0	0.003610	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			58	62					2.18419e-29	3.02943e-29	0.003610	1	0
C1orf161	126868	broad.mit.edu	37	1	116670178	116670178	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:116670178G>A	uc001egc.1	+	5	838	c.573G>A	c.(571-573)GTG>GTA	p.V191V		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	191											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		TCCCCGCAGTGGAGATCCCCA	0.587													36	29					0	0	0.004289	0	0
CD101	9398	broad.mit.edu	37	1	117560035	117560035	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:117560035C>T	uc010oxb.1	+	5	1610	c.1552C>T	c.(1552-1554)CGG>TGG	p.R518W	CD101_uc009whd.2_Missense_Mutation_p.R518W|CD101_uc010oxc.1_Missense_Mutation_p.R518W|CD101_uc010oxd.1_Missense_Mutation_p.R456W	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	518	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TGAGAAGTCTCGGAACCAGGC	0.483													24	24					0	0	0.003330	0	0
FAM46C	54855	broad.mit.edu	37	1	118165518	118165518	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:118165518G>A	uc001ehe.2	+	2	227	c.28G>A	c.(28-30)GAT>AAT	p.D10N		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	10											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		CTGTACCAGGGATTGCATGTC	0.527										Multiple Myeloma(3;1.13e-06)			17	15					0	0	0.001523	0	0
GDAP2	54834	broad.mit.edu	37	1	118454616	118454616	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:118454616G>A	uc001ehf.2	-	5	858	c.559C>T	c.(559-561)CGC>TGC	p.R187C	GDAP2_uc001ehg.2_Missense_Mutation_p.R187C	NM_017686	NP_060156	Q9NXN4	GDAP2_HUMAN	ganglioside induced differentiation associated	187	Macro.									ovary(2)	2		all_cancers(81;0.0156)|all_lung(203;5.81e-05)|Lung NSC(69;0.000446)|all_epithelial(167;0.00295)		Lung(183;0.0583)|LUSC - Lung squamous cell carcinoma(189;0.194)		TATTACTTACGAAGTGCTATG	0.279													9	24					0	0	0.004482	0	0
SPAG17	200162	broad.mit.edu	37	1	118506531	118506531	+	Missense_Mutation	SNP	C	T	T	rs142632361		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:118506531C>T	uc001ehk.2	-	48	6631	c.6563G>A	c.(6562-6564)CGA>CAA	p.R2188Q		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	2188						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTCTTTTGGTCGTTTATCATA	0.338													22	39					0	0	0.003954	0	0
HSD3B2	3284	broad.mit.edu	37	1	119965009	119965009	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:119965009C>T	uc001ehs.2	+	3	1658	c.885C>T	c.(883-885)TTC>TTT	p.F295F	HSD3B2_uc001eht.2_Silent_p.F295F|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	295	Helical; (Potential).				androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	GGATTGGCTTCCTGCTGGAAG	0.458													15	59					0	0	0.003163	0	0
SEC22B	9554	broad.mit.edu	37	1	145109575	145109575	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:145109575C>T	uc001eml.1	+	5	377	c.237C>T	c.(235-237)TTC>TTT	p.F79F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	79	Longin.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						AAGCTGCCTTCCCTAAGACGT	0.433													19	307					0	0	0.008871	0	0
GJA8	2703	broad.mit.edu	37	1	147380438	147380438	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:147380438G>A	uc001epu.1	+	2	419	c.356G>A	c.(355-357)GGG>GAG	p.G119E		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	119	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CAGCAGGCGGGGACTAACGGC	0.662													11	29					0	0	0.001368	0	0
ANXA9	8416	broad.mit.edu	37	1	150960769	150960769	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:150960769C>T	uc001ewa.2	+	12	1274	c.804C>T	c.(802-804)ATC>ATT	p.I268I		NM_003568	NP_003559	O76027	ANXA9_HUMAN	annexin A9	268					cell-cell adhesion	cell surface|cytosol	acetylcholine receptor activity|calcium ion binding|calcium-dependent phospholipid binding|phosphatidylserine binding|protein homodimerization activity				0	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTTCGGTGATCAAGAACACAC	0.512													37	42					0	0	0.006999	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058282	152058282	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152058282C>T	uc001ezo.1	-	3	1941	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	626							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GCAGGCTGTTCCTGGTCCTCT	0.567													34	41					0	0	0.003755	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058541	152058541	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152058541G>A	uc001ezo.1	-	3	1682	c.1617C>T	c.(1615-1617)TTC>TTT	p.F539F		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	539							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CACTCTGTGTGAATGGTGACT	0.527													46	46					0	0	0.003214	0	0
RPTN	126638	broad.mit.edu	37	1	152129289	152129289	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152129289C>T	uc001ezs.1	-	3	351	c.286G>A	c.(286-288)GGC>AGC	p.G96S		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	96						proteinaceous extracellular matrix	calcium ion binding				0						GAGGTCCTGCCTCCATGTGAC	0.483													33	111					0	0	0.004878	0	0
FLG	2312	broad.mit.edu	37	1	152279060	152279060	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152279060C>T	uc001ezu.1	-	3	8338	c.8302G>A	c.(8302-8304)GAG>AAG	p.E2768K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2768	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGCCTGCTCATGGCGGGAT	0.582									Ichthyosis				53	413					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152284089	152284089	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152284089C>T	uc001ezu.1	-	3	3309	c.3273G>A	c.(3271-3273)CAG>CAA	p.Q1091Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1091	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGGGCCCATCCTGTCCATGGC	0.572									Ichthyosis				144	144					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152286754	152286754	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152286754C>T	uc001ezu.1	-	3	644	c.608G>A	c.(607-609)AGA>AAA	p.R203K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	203	Potential.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCTTCAAGTCTTTCACTTAG	0.323									Ichthyosis				20	32					0	0	0.001523	0	0
FLG2	388698	broad.mit.edu	37	1	152328226	152328226	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152328226G>A	uc001ezw.3	-	3	2109	c.2036C>T	c.(2035-2037)TCT>TTT	p.S679F	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	679	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCAAAACCAGAGGATTGTCC	0.483													69	140					0	0	0.003610	0	0
CRNN	49860	broad.mit.edu	37	1	152382337	152382337	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152382337C>T	uc001ezx.2	-	3	1295	c.1221G>A	c.(1219-1221)GGG>GGA	p.G407G		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	407					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGTGCTTGCCCCAGTCTGGG	0.612													26	24					0	0	0.003954	0	0
CRNN	49860	broad.mit.edu	37	1	152382519	152382519	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152382519T>C	uc001ezx.2	-	3	1113	c.1039A>G	c.(1039-1041)ACT>GCT	p.T347A		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	347	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTATCTGAGTGTGTCCTCCT	0.592													4	128					0	0	0.000602	0	0
LCE3D	84648	broad.mit.edu	37	1	152552287	152552287	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152552287C>T	uc001fab.2	-	2	183	c.126G>A	c.(124-126)GGG>GGA	p.G42G		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	42					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		GGCCACAGCCCCCAGAGCTTG	0.662													9	38					0	0	0.004482	0	0
KPRP	448834	broad.mit.edu	37	1	152733600	152733600	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152733600C>T	uc001fal.1	+	2	1594	c.1536C>T	c.(1534-1536)GAC>GAT	p.D512D		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	512						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACCCAGGAGACCTAGGCTGTC	0.637													15	34					0	0	0.004007	0	0
LCE1F	353137	broad.mit.edu	37	1	152748928	152748928	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152748928G>A	uc010pdv.1	+	1	81	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	27	Pro-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gccccacaccgaagtgccccc	0.393													12	13					0	0	0.001368	0	0
LCE1C	353133	broad.mit.edu	37	1	152777802	152777802	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152777802G>A	uc001fap.1	-	2	204	c.153C>T	c.(151-153)TGC>TGT	p.C51C		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	51	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGGAGCCACAGCAGCCTCCGG	0.483													12	43					0	0	0.002450	0	0
LCE1C	353133	broad.mit.edu	37	1	152777809	152777809	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:152777809C>T	uc001fap.1	-	2	197	c.146G>A	c.(145-147)GGA>GAA	p.G49E		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	49	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACAGCAGCCTCCGGAGCTGAC	0.463													13	42					0	0	0.004007	0	0
LELP1	149018	broad.mit.edu	37	1	153177315	153177315	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:153177315C>T	uc001fbl.2	+	2	242	c.132C>T	c.(130-132)TTC>TTT	p.F44F		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	44	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACGCTGTTTCGAAAAGTGCC	0.567													27	55					0	0	0.008361	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153309709	153309709	+	Silent	SNP	G	A	A	rs140665438		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:153309709G>A	uc001fbo.2	-	8	956	c.891C>T	c.(889-891)ACC>ACT	p.T297T	PGLYRP4_uc001fbp.2_Silent_p.T293T	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	297	Interaction with murein.				defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			CGTAGCCAGGGGTGGAGGAGC	0.542													22	18					0	0	0.001882	0	0
S100A9	6280	broad.mit.edu	37	1	153330861	153330861	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:153330861G>A	uc001fbq.2	+	2	145	c.102G>A	c.(100-102)CAG>CAA	p.Q34Q		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	34	EF-hand 1.|1; low affinity.				cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCCTGAACCAGGGGGAATTCA	0.517													15	17					0	0	0.002450	0	0
GON4L	54856	broad.mit.edu	37	1	155735709	155735709	+	Silent	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:155735709A>C	uc001flz.2	-	21	3652	c.3555T>G	c.(3553-3555)GTT>GTG	p.V1185V	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Silent_p.V1185V|GON4L_uc009wrh.1_Silent_p.V1185V|GON4L_uc001fma.1_Silent_p.V1185V|GON4L_uc001fmb.3_Silent_p.V381V|GON4L_uc001fmc.2_Silent_p.V1185V|GON4L_uc001fmd.3_Silent_p.V1185V|GON4L_uc009wri.2_Silent_p.V771V	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1185					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					AAGTAGGGTTAACCAAGAGGG	0.507													11	46					0	0	0.000978	0	0
C1orf61	10485	broad.mit.edu	37	1	156374353	156374353	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:156374353G>A	uc001fou.1	-	7	581	c.464C>T	c.(463-465)TCC>TTC	p.S155F	C1orf61_uc001fot.1_3'UTR|C1orf61_uc001fov.1_RNA|C1orf61_uc001fow.1_RNA|C1orf61_uc001fox.1_RNA	NM_006365	NP_006356	Q13536	CROC4_HUMAN	transcriptional activator of the c-fos promoter	155						nucleus				skin(1)	1	Hepatocellular(266;0.158)					TTATCAGAGGGAATCCAGCCC	0.368													20	34					0	0	0.005443	0	0
PRCC	5546	broad.mit.edu	37	1	156756879	156756879	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:156756879C>T	uc001fqa.2	+	3	1286	c.996C>T	c.(994-996)GCC>GCT	p.A332A	PRCC_uc001fqb.2_Silent_p.A332A	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	332					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CAAGTGGGGCCCCTTGGATGC	0.567			T	TFE3	papillary renal 								35	139					0	0	0.006230	0	0
ETV3L	440695	broad.mit.edu	37	1	157067719	157067719	+	Missense_Mutation	SNP	G	A	A	rs148705550	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:157067719G>A	uc001fqq.1	-	4	833	c.548C>T	c.(547-549)ACC>ATC	p.T183I		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	183						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				CCCTCGGGGGGTCTGCTGTCC	0.622													6	35					0	0	0.001168	0	0
FCRL5	83416	broad.mit.edu	37	1	157514089	157514089	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:157514089G>A	uc001fqu.2	-	5	965	c.807C>T	c.(805-807)GTC>GTT	p.V269V	FCRL5_uc009wsm.2_Silent_p.V269V|FCRL5_uc010phv.1_Silent_p.V269V|FCRL5_uc010phw.1_Silent_p.V184V|FCRL5_uc001fqv.1_Silent_p.V269V|FCRL5_uc010phx.1_Silent_p.V20V	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	269	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TGTCAGATATGACGCTGTAAG	0.507													35	123					0	0	0.003214	0	0
OR10T2	128360	broad.mit.edu	37	1	158368870	158368870	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158368870G>A	uc010pih.1	-	1	387	c.387C>T	c.(385-387)CAC>CAT	p.H129H		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					ACCTCAGAGGGTGACAAATTG	0.488													10	46					0	0	0.008291	0	0
OR10T2	128360	broad.mit.edu	37	1	158368948	158368948	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158368948G>A	uc010pih.1	-	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAAGGAAAAAGAACAGCTGGG	0.507													6	18					0	0	0.001168	0	0
OR10K2	391107	broad.mit.edu	37	1	158389888	158389888	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158389888A>T	uc010pii.1	-	1	769	c.769T>A	c.(769-771)TTT>ATT	p.F257I		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AAGTAGATAAAGGAGGCACAG	0.423													9	46					0	0	0.000978	0	0
OR10K2	391107	broad.mit.edu	37	1	158390029	158390029	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158390029G>A	uc010pii.1	-	1	628	c.628C>T	c.(628-630)CCC>TCC	p.P210S		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AACAATAAGGGGATAGCCAGG	0.453													13	13					0	0	0.001368	0	0
OR10K2	391107	broad.mit.edu	37	1	158390631	158390631	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158390631A>C	uc010pii.1	-	1	26	c.26T>G	c.(25-27)GTG>GGG	p.V9G		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GACCTCTCTCACCACAGTCTC	0.502													6	25					0	0	0.001168	0	0
OR10K1	391109	broad.mit.edu	37	1	158436014	158436014	+	Silent	SNP	C	T	T	rs151132888	by1000genomes	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158436014C>T	uc010pij.1	+	1	663	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ACATCCGCATCATCTCTGCCA	0.473													12	42					0	0	0.002450	0	0
SPTA1	6708	broad.mit.edu	37	1	158609764	158609764	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158609764G>A	uc001fst.1	-	34	4970	c.4771C>T	c.(4771-4773)CAT>TAT	p.H1591Y		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1591	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCAAGCAGATGATCCCAATGT	0.488													13	52					0	0	0.002450	0	0
OR6N1	128372	broad.mit.edu	37	1	158736023	158736023	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:158736023C>T	uc010piq.1	-	1	450	c.450G>A	c.(448-450)TTG>TTA	p.L150L		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CCAAGCCTCCCAACCAACAGC	0.532													9	6					0	0	0.004482	0	0
OR10J5	127385	broad.mit.edu	37	1	159505736	159505736	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:159505736C>T	uc010piw.1	-	1	62	c.62G>A	c.(61-63)GGA>GAA	p.G21E		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					CTGATGCTTTCCAAAGCTAGA	0.368													10	51					0	0	0.000978	0	0
IGSF9	57549	broad.mit.edu	37	1	159900224	159900224	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:159900224G>A	uc001fur.2	-	15	2017	c.1819C>T	c.(1819-1821)CCT>TCT	p.P607S	IGSF9_uc001fuq.2_Missense_Mutation_p.P591S|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	607	Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GGCGTGGTAGGAAGCCCTGCG	0.662													18	38					0	0	0.002299	0	0
CD84	8832	broad.mit.edu	37	1	160519762	160519762	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:160519762G>A	uc001fwh.3	-	7	941	c.917C>T	c.(916-918)CCC>CTC	p.P306L	CD84_uc001fwf.3_Missense_Mutation_p.P289L|CD84_uc001fwg.3_Missense_Mutation_p.P300L|CD84_uc009wtn.2_Silent_p.S256S|CD84_uc001fwi.3_Missense_Mutation_p.P175L	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	306	Cytoplasmic (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			TTCCTTGGAGGGAAGCACCTG	0.493													23	16					0	0	0.004656	0	0
LY9	4063	broad.mit.edu	37	1	160788033	160788033	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:160788033G>A	uc001fwu.2	+	6	1418	c.1368G>A	c.(1366-1368)TGG>TGA	p.W456*	LY9_uc001fwv.2_Nonsense_Mutation_p.W456*|LY9_uc001fww.2_Nonsense_Mutation_p.W366*|LY9_uc001fwx.2_Nonsense_Mutation_p.W366*|LY9_uc001fwy.1_Nonsense_Mutation_p.W268*|LY9_uc001fwz.2_Nonsense_Mutation_p.W108*	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	456	Helical; (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CAAAGCTTTGGATTGGGTTGT	0.438													10	44					0	0	0.008291	0	0
NOS1AP	9722	broad.mit.edu	37	1	162337146	162337146	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:162337146G>A	uc001gbv.2	+	10	1797	c.1410G>A	c.(1408-1410)ACG>ACA	p.T470T	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Silent_p.T465T|NOS1AP_uc009wut.1_Silent_p.T175T	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	470					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			AGTCCAACACGGACGAGAGCG	0.667													8	8					0	0	0.003080	0	0
DDR2	4921	broad.mit.edu	37	1	162725007	162725007	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:162725007T>C	uc001gcf.2	+	7	944	c.479T>C	c.(478-480)GTA>GCA	p.V160A	DDR2_uc001gcg.2_Missense_Mutation_p.V160A	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	160	Extracellular (Potential).|F5/8 type C.				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CCGCCCATTGTAGCCAGATTT	0.488													26	53					0	0	0.006320	0	0
DDR2	4921	broad.mit.edu	37	1	162731107	162731107	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:162731107C>T	uc001gcf.2	+	10	1427	c.962C>T	c.(961-963)CCC>CTC	p.P321L	DDR2_uc001gcg.2_Missense_Mutation_p.P321L	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	321	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			ATTTCCTTCCCCCTTGTCCTG	0.502													6	22					0	0	0.003080	0	0
PBX1	5087	broad.mit.edu	37	1	164789377	164789377	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:164789377G>A	uc001gct.2	+	7	1324	c.1066G>A	c.(1066-1068)GAT>AAT	p.D356N	PBX1_uc010pku.1_Missense_Mutation_p.D356N|PBX1_uc010pkv.1_Missense_Mutation_p.D273N|PBX1_uc001gcs.2_Intron|PBX1_uc010pkw.1_Missense_Mutation_p.D246N	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	356					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						ACTCAATGGGGATTCTTACCA	0.498			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								12	37					0	0	0.004990	0	0
SELP	6403	broad.mit.edu	37	1	169578799	169578799	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:169578799C>T	uc001ggi.3	-	8	1341	c.1276G>A	c.(1276-1278)GAT>AAT	p.D426N	SELP_uc001ggh.2_Missense_Mutation_p.D261N|SELP_uc009wvr.2_Missense_Mutation_p.D426N	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	426	Sushi 4.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CGAACTATATCGGCTCCTCTC	0.498													22	43					0	0	0.003954	0	0
C1orf129	80133	broad.mit.edu	37	1	170961428	170961428	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:170961428G>A	uc001ghg.2	+	12	1282	c.1152G>A	c.(1150-1152)GGG>GGA	p.G384G	C1orf129_uc009wvy.2_Silent_p.G191G|C1orf129_uc010plz.1_Silent_p.G384G	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	384							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TAACGGAAGGGAAACGTTTCT	0.458													24	44					0	0	0.006320	0	0
FMO4	2329	broad.mit.edu	37	1	171292163	171292163	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:171292163G>A	uc001gho.2	+	4	370	c.153G>A	c.(151-153)ATG>ATA	p.M51I		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	51					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					AAGATGGGATGACCAGGGTCT	0.423													23	20					0	0	0.003330	0	0
MYOC	4653	broad.mit.edu	37	1	171605220	171605220	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:171605220C>G	uc001ghu.2	-	3	1382	c.1360G>C	c.(1360-1362)GAC>CAC	p.D454H	MYOC_uc010pmk.1_Missense_Mutation_p.D396H	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	454	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					GTGCCTGTGTCATAAGCAAAG	0.502													3	107					0	0	0.004672	0	0
MYOC	4653	broad.mit.edu	37	1	171621369	171621369	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:171621369C>G	uc001ghu.2	-	1	405	c.383G>C	c.(382-384)CGG>CCG	p.R128P	MYOC_uc010pmk.1_Intron	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	128	Potential.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CAGCTGGTCCCGCTCCCGCCT	0.612													30	25					0	0	0.002445	0	0
ANKRD45	339416	broad.mit.edu	37	1	173593929	173593929	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:173593929G>A	uc001gja.1	-	5	788	c.727C>T	c.(727-729)CCA>TCA	p.P243S		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	259											0						AACTTACATGGTGTAGTCATT	0.338													8	34					0	0	0.008291	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628503	173628503	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:173628503C>T	uc001gja.1	-	2	116	c.55G>A	c.(55-57)GAA>AAA	p.E19K	ANKRD45_uc001gjb.3_Missense_Mutation_p.E19K	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	35	Poly-Glu.										0						ttttcctcttcttGCTGTGAG	0.323													5	16					0	0	0.000602	0	0
TNR	7143	broad.mit.edu	37	1	175375474	175375474	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:175375474G>A	uc001gkp.1	-	1	458	c.377C>T	c.(376-378)CCA>CTA	p.P126L	TNR_uc009wwu.1_Missense_Mutation_p.P126L|TNR_uc010pmz.1_Missense_Mutation_p.P126L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	126					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACTGGCACATGGACAGGCCTT	0.592													25	35					0	0	0.005443	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525643	176525643	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:176525643C>T	uc001gkz.2	+	2	1349	c.185C>T	c.(184-186)TCT>TTT	p.S62F	PAPPA2_uc001gky.1_Missense_Mutation_p.S62F|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	62					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCAGAGCTTCTCCACAGCAT	0.557													7	74					0	0	0.003080	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668504	176668504	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:176668504C>T	uc001gkz.2	+	8	4179	c.3015C>T	c.(3013-3015)ATC>ATT	p.I1005I	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1005					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCTGTGACATCCCACTCACCA	0.512													48	48					0	0	0.003610	0	0
ASTN1	460	broad.mit.edu	37	1	176833486	176833486	+	Silent	SNP	C	T	T	rs61758730	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:176833486C>T	uc001glc.2	-	23	4031	c.3819G>A	c.(3817-3819)AGG>AGA	p.R1273R	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1281					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACACGTCTTCCTGAGGTCCC	0.572													23	72					0	0	0.001882	0	0
ASTN1	460	broad.mit.edu	37	1	177001937	177001938	+	Silent	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:177001937_177001938GG>AA	uc001glc.2	-	3	731_732	c.519_520CC>TT	c.(517-522)ATCCTG>ATTTTG	p.173_174IL>IL	ASTN1_uc001glb.1_Silent_p.173_174IL>IL|ASTN1_uc001gld.1_Silent_p.173_174IL>IL|ASTN1_uc009wwx.1_Silent_p.173_174IL>IL|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	173_174	Helical; (Potential).				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CGAGTATACAGGATCATCACCA	0.579													9	30					0	0	0.004672	0	0
RASAL2	9462	broad.mit.edu	37	1	178421659	178421659	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:178421659C>T	uc001glr.2	+	9	1562	c.1437C>T	c.(1435-1437)CTC>CTT	p.L479L	RASAL2_uc001glq.2_Silent_p.L627L|RASAL2_uc009wxc.2_5'UTR	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	479	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						CATTATTTCTCCGTTTTCTGT	0.483													43	57					0	0	0.002852	0	0
RASAL2	9462	broad.mit.edu	37	1	178425968	178425968	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:178425968C>T	uc001glr.2	+	11	2026	c.1901C>T	c.(1900-1902)TCC>TTC	p.S634F	RASAL2_uc001glq.2_Missense_Mutation_p.S775F|RASAL2_uc009wxc.2_Missense_Mutation_p.S148F	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	634					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GAACATAACTCCAGTCCAAAT	0.458													58	72					0	0	0.003610	0	0
C1orf125	126859	broad.mit.edu	37	1	179494553	179494553	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:179494553C>T	uc001gmo.2	+	22	2708	c.2581C>T	c.(2581-2583)CAG>TAG	p.Q861*	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	861	Glu-rich.										0						TAGGAAACTTCAGGAGGAAAA	0.289													7	30					0	0	0.003080	0	0
TDRD5	163589	broad.mit.edu	37	1	179620094	179620094	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:179620094C>T	uc001gnf.1	+	12	2143	c.1893C>T	c.(1891-1893)ATC>ATT	p.I631I	TDRD5_uc010pnp.1_Silent_p.I631I|TDRD5_uc001gnh.1_Silent_p.I186I	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	631					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TAGATGGAATCCTTAACATTT	0.403													44	28					0	0	0.003610	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179886931	179886931	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:179886931C>T	uc001gnq.2	+	10	1527	c.1309C>T	c.(1309-1311)CGT>TGT	p.R437C		NM_015602	NP_056417	Q5JTV8	TOIP1_HUMAN	lamina-associated polypeptide 1B	437	Lumenal (Potential).					integral to membrane|nuclear inner membrane				breast(1)|central_nervous_system(1)	2						TTCTTCTTTTCGTAGTGTCCG	0.458													13	56					0	0	0.001855	0	0
MR1	3140	broad.mit.edu	37	1	181021477	181021477	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:181021477G>A	uc001goq.1	+	4	716	c.711G>A	c.(709-711)ATG>ATA	p.M237I	MR1_uc001gor.1_Missense_Mutation_p.M192I|MR1_uc001gos.1_Intron|MR1_uc010pns.1_Intron	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class	237	Extracellular (Potential).|Alpha-3.|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						TGACATGGATGAAAAACGGGG	0.448													13	32					0	0	0.002450	0	0
RGS8	85397	broad.mit.edu	37	1	182617273	182617274	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:182617273_182617274TC>CT	uc010pnw.1	-	6	616_617	c.358_359GA>AG	c.(358-360)GAG>AGG	p.E120R	RGS8_uc001gpn.1_Missense_Mutation_p.E120R|RGS8_uc001gpm.1_Missense_Mutation_p.E138R	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	120	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						CCAACACACCTCCCGTGGAGCC	0.525													22	78					0	0	0.004672	0	0
RGL1	23179	broad.mit.edu	37	1	183835180	183835180	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:183835180C>T	uc001gqo.2	+	4	555	c.398C>T	c.(397-399)TCA>TTA	p.S133L	RGL1_uc010pof.1_Intron|RGL1_uc001gqm.2_Missense_Mutation_p.S168L|RGL1_uc010pog.1_Missense_Mutation_p.S131L|RGL1_uc010poh.1_Missense_Mutation_p.S131L|RGL1_uc010poi.1_Missense_Mutation_p.S133L	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	133	N-terminal Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						AGCCAAAGTTCATCAGAGTCC	0.388													11	31					0	0	0.001368	0	0
HMCN1	83872	broad.mit.edu	37	1	185704017	185704017	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:185704017C>T	uc001grq.1	+	1	335	c.106C>T	c.(106-108)CCC>TCC	p.P36S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	36					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGAGGAAATTCCCGAGGGGGC	0.463													53	60					0	0	0.003610	0	0
HMCN1	83872	broad.mit.edu	37	1	186083236	186083236	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:186083236C>T	uc001grq.1	+	73	11486	c.11257C>T	c.(11257-11259)CTA>TTA	p.L3753L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3753	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGGAGCTGTTCTAGCTGGGAA	0.368													9	47					0	0	0.006214	0	0
PDC	5132	broad.mit.edu	37	1	186415666	186415666	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:186415666C>T	uc001gsa.2	-	3	178	c.105G>A	c.(103-105)GAG>GAA	p.E35E	PDC_uc001grz.2_5'UTR	NM_002597	NP_002588	P20941	PHOS_HUMAN	phosducin isoform a	35					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			skin(1)	1		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		TGTCTTGACTCTCTAATTTAA	0.358													8	32					0	0	0.004482	0	0
CFH	3075	broad.mit.edu	37	1	196642191	196642191	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:196642191G>A	uc001gtj.3	+	2	382	c.142G>A	c.(142-144)GCT>ACT	p.A48T	CFH_uc001gti.3_Missense_Mutation_p.A48T|CFH_uc009wyw.2_Missense_Mutation_p.A48T|CFH_uc009wyx.2_Missense_Mutation_p.A48T	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	48	Sushi 1.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						AGGCACCCAGGCTATCTATAA	0.398													12	9					0	0	0.000978	0	0
CFH	3075	broad.mit.edu	37	1	196695951	196695951	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:196695951C>T	uc001gtj.3	+	14	2357	c.2117C>T	c.(2116-2118)TCC>TTC	p.S706F		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	706	Sushi 12.				complement activation, alternative pathway	extracellular space		p.S706S(1)		skin(4)|ovary(1)|breast(1)	6						CAGCTTTCTTCCCCTCCTTAT	0.383													22	10					0	0	0.001882	0	0
FAM58B	339521	broad.mit.edu	37	1	200183175	200183175	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:200183175T>C	uc009wzi.1	+	1	520	c.484T>C	c.(484-486)TGC>CGC	p.C162R		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	162					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CTGGCTGAACTGCCACAGCTG	0.617													3	30					0	0	0.001168	0	0
C1orf106	55765	broad.mit.edu	37	1	200880589	200880589	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:200880589C>T	uc001gvo.2	+	9	1253	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F	C1orf106_uc010ppm.1_Missense_Mutation_p.S323F	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	408										skin(2)|ovary(1)	3						AGGGTGGATTCCTTCCGGGCG	0.632													42	170					0	0	0.003610	0	0
CACNA1S	779	broad.mit.edu	37	1	201046074	201046074	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:201046074G>A	uc001gvv.2	-	12	2028	c.1801C>T	c.(1801-1803)CCC>TCC	p.P601S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	601	II.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	agggCTTGGGGAAAGTTGTCA	0.284													26	58					0	0	0.007291	0	0
SHISA4	149345	broad.mit.edu	37	1	201860574	201860574	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:201860574C>T	uc001gxa.2	+	4	516	c.425C>T	c.(424-426)CCA>CTA	p.P142L		NM_198149	NP_937792	Q96DD7	SHSA4_HUMAN	shisa homolog 4 precursor	142	Cytoplasmic (Potential).|Pro-rich.					integral to membrane					0						CCAGTATACCCATACCCCCAG	0.582													14	49					0	0	0.004007	0	0
FMOD	2331	broad.mit.edu	37	1	203317352	203317352	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:203317352G>A	uc001gzr.2	-	2	183	c.47C>T	c.(46-48)TCC>TTC	p.S16F	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	16					transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			CTGGGCCTGGGAGAGGGAGAA	0.567													9	39					0	0	0.006214	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204433193	204433193	+	Silent	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:204433193C>A	uc001haw.2	-	6	1736	c.1257G>T	c.(1255-1257)GTG>GTT	p.V419V	PIK3C2B_uc010pqv.1_Silent_p.V419V|PIK3C2B_uc001hax.1_Silent_p.V419V|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	419					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			CACCCACGTCCACATTCCTCA	0.537													21	79					6.44725e-10	8.89042e-10	0.002299	1	0
KLHDC8A	55220	broad.mit.edu	37	1	205308350	205308350	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:205308350C>T	uc001hcf.1	-	4	1297	c.729G>A	c.(727-729)CGG>CGA	p.R243R	KLHDC8A_uc010prg.1_Silent_p.R130R|KLHDC8A_uc001hcg.1_Silent_p.R243R	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	243	Kelch 6.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CGTCCATCGTCCGCAGGAACT	0.617													4	20					0	0	0.001168	0	0
SLC41A1	254428	broad.mit.edu	37	1	205764127	205764127	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:205764127G>A	uc001hdh.1	-	10	2099	c.1227C>T	c.(1225-1227)GCC>GCT	p.A409A	SLC41A1_uc001hdg.1_Silent_p.A30A	NM_173854	NP_776253	Q8IVJ1	S41A1_HUMAN	solute carrier family 41 member 1	409						integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			skin(2)	2	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			AGAGGACCCGGGCTGAGCGAG	0.567													8	29					0	0	0.008291	0	0
LGTN	1939	broad.mit.edu	37	1	206773087	206773087	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:206773087C>T	uc001heh.2	-	9	1261	c.1052G>A	c.(1051-1053)AGG>AAG	p.R351K	LGTN_uc009xbw.2_Missense_Mutation_p.R227K	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	351					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CTGCACTCACCTCGGGTGTTT	0.547													14	40					0	0	0.004990	0	0
CR1	1378	broad.mit.edu	37	1	207739232	207739232	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:207739232G>A	uc001hfy.2	+	16	2706	c.2566G>A	c.(2566-2568)GAA>AAA	p.E856K	CR1_uc009xcl.1_Intron|CR1_uc001hfx.2_Missense_Mutation_p.E1306K|CR1_uc009xck.1_Intron	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	856	Extracellular (Potential).|Sushi 13.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GGCTGGAATGGAAAGCCTTTG	0.418													23	92					0	0	0.005443	0	0
CR1	1378	broad.mit.edu	37	1	207758068	207758068	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:207758068G>A	uc001hfy.2	+	25	4167	c.4027G>A	c.(4027-4029)GGA>AGA	p.G1343R	CR1_uc009xcl.1_Missense_Mutation_p.G893R|CR1_uc001hfx.2_Missense_Mutation_p.G1793R	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1343	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TATTCCCTATGGAAAAGAAAT	0.468													47	54					0	0	0.003610	0	0
LOC642587	642587	broad.mit.edu	37	1	209602743	209602743	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:209602743C>T	uc009xcn.2	+	2	484	c.101C>T	c.(100-102)GCT>GTT	p.A34V	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		GAACTGGGTGCTTTATATAGG	0.418													9	9					0	0	0.000978	0	0
LAMB3	3914	broad.mit.edu	37	1	209797343	209797343	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:209797343C>T	uc001hhg.2	-	14	2369	c.1979G>A	c.(1978-1980)CGA>CAA	p.R660Q	LAMB3_uc009xco.2_Missense_Mutation_p.R660Q|LAMB3_uc001hhh.2_Missense_Mutation_p.R660Q|LAMB3_uc010psl.1_RNA|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	660	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTGGAGAGTTCGCCTGAGAAG	0.532													7	30					0	0	0.001984	0	0
USH2A	7399	broad.mit.edu	37	1	215901413	215901413	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:215901413G>A	uc001hku.1	-	61	12412	c.12025C>T	c.(12025-12027)CCT>TCT	p.P4009S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4009	Fibronectin type-III 25.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTAAATGTAGGATCGTCGGGT	0.443										HNSCC(13;0.011)			26	87					0	0	0.006320	0	0
USH2A	7399	broad.mit.edu	37	1	216073536	216073536	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:216073536G>A	uc001hku.1	-	40	7862	c.7475C>T	c.(7474-7476)TCG>TTG	p.S2492L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2492	Extracellular (Potential).|Fibronectin type-III 11.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATAGCTTAACGATGCAGAAGG	0.368										HNSCC(13;0.011)			15	18					0	0	0.004007	0	0
USH2A	7399	broad.mit.edu	37	1	216251499	216251499	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:216251499G>A	uc001hku.1	-	27	5891	c.5504C>T	c.(5503-5505)TCA>TTA	p.S1835L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1835	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATAAACTGGTGAATTCACCAC	0.433										HNSCC(13;0.011)			29	34					0	0	0.007291	0	0
IARS2	55699	broad.mit.edu	37	1	220267774	220267774	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:220267774C>T	uc001hmc.2	+	1	320	c.216C>T	c.(214-216)CCC>CCT	p.P72P		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	72					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	CGAGCTTCCCCATGAAGCTGC	0.697													8	6					0	0	0.004482	0	0
IARS2	55699	broad.mit.edu	37	1	220315224	220315224	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:220315224C>T	uc001hmc.2	+	20	2598	c.2494C>T	c.(2494-2496)CGT>TGT	p.R832C	IARS2_uc001hmd.2_Missense_Mutation_p.R168C	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	832					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGTAATAGTTCGTTCTTTTGC	0.378													20	51					0	0	0.008871	0	0
IARS2	55699	broad.mit.edu	37	1	220316450	220316450	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:220316450C>T	uc001hmc.2	+	21	2829	c.2725C>T	c.(2725-2727)CCT>TCT	p.P909S	IARS2_uc001hmd.2_Missense_Mutation_p.P245S	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	909					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGTGATAGAACCTGGACTGCT	0.408													9	45					0	0	0.004482	0	0
TP53BP2	7159	broad.mit.edu	37	1	223984142	223984142	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:223984142G>A	uc010pvb.1	-	13	2391	c.2099C>T	c.(2098-2100)CCT>CTT	p.P700L	TP53BP2_uc001hod.2_Missense_Mutation_p.P571L|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.P339L	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	694					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		GAGTGGCCGAGGAATTCTTTC	0.448													45	56					0	0	0.003610	0	0
OBSCN	84033	broad.mit.edu	37	1	228505765	228505765	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:228505765G>A	uc009xez.1	+	53	14066	c.14022G>A	c.(14020-14022)CAG>CAA	p.Q4674Q	OBSCN_uc001hsn.2_Silent_p.Q4674Q	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4674	Ig-like 47.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGTCTCCCAGGGTCGGCAAC	0.637													34	49					0	0	0.008740	0	0
RHOU	58480	broad.mit.edu	37	1	228873457	228873457	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:228873457A>G	uc001htf.2	+	2	921	c.300A>G	c.(298-300)CAA>CAG	p.Q100Q		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	100					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				TGAGACTCCAACTCTGTGACA	0.458													8	53					0	0	0.006214	0	0
TAF5L	27097	broad.mit.edu	37	1	229738560	229738560	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:229738560A>C	uc001htq.2	-	4	520	c.354T>G	c.(352-354)AGT>AGG	p.S118R	TAF5L_uc001htr.2_Missense_Mutation_p.S118R	NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	118					histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				GGCTGTAAAAACTTTCCACTG	0.478													16	44					0	0	0.004990	0	0
AGT	183	broad.mit.edu	37	1	230841681	230841681	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:230841681G>A	uc001hty.3	-	3	1630	c.1122C>T	c.(1120-1122)CCC>CCT	p.P374P	AGT_uc009xfe.2_Silent_p.P374P|AGT_uc009xff.2_Silent_p.P346P	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	374					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	GCTCCTACCGGGGAGATAGTT	0.607													22	84					0	0	0.003954	0	0
PCNXL2	80003	broad.mit.edu	37	1	233190014	233190014	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:233190014C>T	uc001hvl.2	-	25	4586	c.4351G>A	c.(4351-4353)GGA>AGA	p.G1451R	PCNXL2_uc001hvk.1_Missense_Mutation_p.G103R|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1451						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AAATTCTTACCTCGGAATTCC	0.363													5	20					0	0	0.000602	0	0
PCNXL2	80003	broad.mit.edu	37	1	233372670	233372670	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:233372670G>A	uc001hvl.2	-	9	2514	c.2279C>T	c.(2278-2280)TCT>TTT	p.S760F	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Missense_Mutation_p.S59F	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	760						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGGGTCCCCAGAAGACGGATC	0.532													42	33					0	0	0.007835	0	0
KIAA1804	84451	broad.mit.edu	37	1	233518316	233518316	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:233518316G>A	uc001hvt.3	+	10	3231	c.2970G>A	c.(2968-2970)GAG>GAA	p.E990E	KIAA1804_uc001hvu.3_Silent_p.E436E	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	990					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CTGCCAAGGAGAGAACTAAAT	0.557													6	22					0	0	0.003080	0	0
FMN2	56776	broad.mit.edu	37	1	240370842	240370842	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:240370842C>T	uc010pyd.1	+	5	2955	c.2730C>T	c.(2728-2730)CCC>CCT	p.P910P	FMN2_uc010pye.1_Silent_p.P914P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	910	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGCTGCCACCCCCTCCCCCTC	0.657													25	20					0	0	0.005443	0	0
FMN2	56776	broad.mit.edu	37	1	240370954	240370954	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:240370954C>T	uc010pyd.1	+	5	3067	c.2842C>T	c.(2842-2844)CTA>TTA	p.L948L	FMN2_uc010pye.1_Silent_p.L952L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	948	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCCGCCCCCTCTACCCGGAGC	0.687													9	2					0	0	0.004482	0	0
RGS7	6000	broad.mit.edu	37	1	240979694	240979694	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:240979694C>T	uc001hyv.2	-	11	1036	c.706G>A	c.(706-708)GAT>AAT	p.D236N	RGS7_uc010pyh.1_Missense_Mutation_p.D210N|RGS7_uc010pyj.1_Missense_Mutation_p.D152N|RGS7_uc001hyu.2_Missense_Mutation_p.D236N|RGS7_uc009xgn.1_Missense_Mutation_p.D183N|RGS7_uc001hyw.2_Missense_Mutation_p.D236N|RGS7_uc001hyt.2_Missense_Mutation_p.D68N	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	236					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CTTCTAATATCATTTTGTAAA	0.353													37	57					0	0	0.004878	0	0
C1orf101	257044	broad.mit.edu	37	1	244756834	244756834	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:244756834C>T	uc001iam.2	+	17	2316	c.2257C>T	c.(2257-2259)CCT>TCT	p.P753S	C1orf101_uc001iak.1_Missense_Mutation_p.P307S|C1orf101_uc001ial.2_Missense_Mutation_p.P753S|C1orf101_uc010pym.1_Missense_Mutation_p.P602S|C1orf101_uc010pyn.1_Missense_Mutation_p.P686S	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	753	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			ATATGGCTGCCCTCTGAGGCT	0.323													19	26					0	0	0.006122	0	0
OR2W5	441932	broad.mit.edu	37	1	247655000	247655000	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:247655000G>A	uc001icz.1	+	1	571	c.571G>A	c.(571-573)GAA>AAA	p.E191K		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	191					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GTCTTGTGAGGAAACCATGCT	0.577													17	82					0	0	0.006122	0	0
OR2G2	81470	broad.mit.edu	37	1	247752420	247752420	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:247752420C>T	uc010pyy.1	+	1	759	c.759C>T	c.(757-759)ATC>ATT	p.I253I		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			tggtcaccatcttttatggaa	0.408													32	34					0	0	0.008361	0	0
OR6F1	343169	broad.mit.edu	37	1	247875901	247875901	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:247875901G>A	uc001idj.1	-	1	157	c.157C>T	c.(157-159)CAT>TAT	p.H53Y		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TGCAACTGATGGGAGGTGCTC	0.468													18	53					0	0	0.004990	0	0
OR2M2	391194	broad.mit.edu	37	1	248343672	248343672	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248343672C>T	uc010pzf.1	+	1	385	c.385C>T	c.(385-387)CCT>TCT	p.P129S		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TATTTGCCACCCTCTAAGATA	0.403													91	93					0	0	0.003610	0	0
OR2T33	391195	broad.mit.edu	37	1	248436395	248436395	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248436395G>A	uc010pzi.1	-	1	722	c.722C>T	c.(721-723)TCA>TTA	p.S241L		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGCCACATGTGAAGAGCAGGT	0.517													5	36					0	0	0.004482	0	0
OR2T12	127064	broad.mit.edu	37	1	248458168	248458168	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248458168G>T	uc010pzj.1	-	1	713	c.713C>A	c.(712-714)ACC>AAC	p.T238N		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			TGAAGAGCAGGTGGCAAAGGC	0.522													7	70					0.00448238	0.00613255	0.004482	1	0
OR2T12	127064	broad.mit.edu	37	1	248458211	248458211	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248458211G>A	uc010pzj.1	-	1	670	c.670C>T	c.(670-672)CTG>TTG	p.L224L		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			CGCATGAGCAGAACAGCAGCG	0.512													18	49					0	0	0.007413	0	0
OR2M7	391196	broad.mit.edu	37	1	248487354	248487354	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248487354C>T	uc010pzk.1	-	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGGCTATTTCCCGAGACCCA	0.433													91	88					0	0	0.003610	0	0
OR2G6	391211	broad.mit.edu	37	1	248685105	248685105	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248685105C>T	uc001ien.1	+	1	158	c.158C>T	c.(157-159)TCC>TTC	p.S53F		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGTCTGGACTCCAGACTCCAC	0.483													17	21					0	0	0.004007	0	0
OR2T10	127069	broad.mit.edu	37	1	248756748	248756748	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:248756748C>T	uc010pzn.1	-	1	322	c.322G>A	c.(322-324)GGA>AGA	p.G108R		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCTGCACCTCCCAACTGCAGG	0.547													14	28					0	0	0.001855	0	0
ZMYND11	10771	broad.mit.edu	37	10	267225	267225	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:267225C>T	uc010pzt.1	+	4	795	c.367C>T	c.(367-369)CAT>TAT	p.H123Y	ZMYND11_uc001ifk.2_Missense_Mutation_p.H123Y|ZMYND11_uc010pzu.1_Missense_Mutation_p.H123Y|ZMYND11_uc010pzv.1_Intron|ZMYND11_uc010pzw.1_Intron|ZMYND11_uc001ifm.2_Intron|ZMYND11_uc010pzx.1_Missense_Mutation_p.H123Y|ZMYND11_uc001ifn.2_Intron|ZMYND11_uc009xhg.2_Missense_Mutation_p.H106Y|ZMYND11_uc009xhh.2_Intron|ZMYND11_uc010pzy.1_Intron	NM_006624	NP_006615	Q15326	ZMY11_HUMAN	zinc finger, MYND domain containing 11 isoform	83	PHD-type.				cell cycle|cell proliferation|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;1.32e-05)|all_lung(4;3.67e-05)|Lung NSC(4;0.000301)|all_epithelial(10;0.000416)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.132)	Epithelial(11;0.00289)|all cancers(11;0.0108)|Lung(33;0.0689)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TCGTGTGTATCATTCCAAGTG	0.453													42	48					0	0	0.006999	0	0
DIP2C	22982	broad.mit.edu	37	10	329246	329246	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:329246G>A	uc001ifp.2	-	35	4350	c.4260C>T	c.(4258-4260)TTC>TTT	p.F1420F		NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1420						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TTCTCCGCAGGAACCCCAAGT	0.547													33	35					0	0	0.004289	0	0
LARP4B	23185	broad.mit.edu	37	10	863676	863676	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:863676A>T	uc001ifs.1	-	14	1725	c.1684T>A	c.(1684-1686)TCC>ACC	p.S562T		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	562							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						CTTTCTTTGGATGGTCCTATT	0.313													97	122					0	0	0.003610	0	0
AKR1C3	8644	broad.mit.edu	37	10	5149682	5149682	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:5149682C>T	uc001ihr.2	+	9	1142	c.959C>T	c.(958-960)TCA>TTA	p.S320L	AKR1C3_uc010qap.1_Missense_Mutation_p.S297L|AKR1C3_uc001ihu.2_Missense_Mutation_p.S320L	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	320					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	TATCCATATTCAGATGAATAT	0.408													8	23					0	0	0.003080	0	0
IL2RA	3559	broad.mit.edu	37	10	6061872	6061872	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:6061872G>A	uc001iiz.1	-	5	775	c.616C>T	c.(616-618)CGT>TGT	p.R206C	IL2RA_uc009xih.1_Missense_Mutation_p.R134C|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	206	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	CTCTCAGGACGGCCTTCGGGG	0.597													21	29					0	0	0.007291	0	0
DHTKD1	55526	broad.mit.edu	37	10	12129677	12129677	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:12129677C>T	uc001ild.3	+	4	765	c.666C>T	c.(664-666)CCC>CCT	p.P222P		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	222					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			TTGGGATGCCCCATAGAGGGA	0.483													95	258					0	0	0.003610	0	0
MCM10	55388	broad.mit.edu	37	10	13217570	13217570	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:13217570C>T	uc001ima.2	+	6	757	c.656C>T	c.(655-657)TCT>TTT	p.S219F	MCM10_uc001imb.2_Missense_Mutation_p.S218F|MCM10_uc001imc.2_Missense_Mutation_p.S218F	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	219					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						CAGACGATTTCTCGGAACAAA	0.468													16	48					0	0	0.004990	0	0
ITGA8	8516	broad.mit.edu	37	10	15760852	15760852	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:15760852C>T	uc001ioc.1	-	2	256	c.256G>A	c.(256-258)GAT>AAT	p.D86N	ITGA8_uc010qcb.1_Missense_Mutation_p.D86N	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	86	Extracellular (Potential).|FG-GAP 1.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TCCACGATATCGGGCTGGCTG	0.577													23	33					0	0	0.003330	0	0
FAM188A	80013	broad.mit.edu	37	10	15824206	15824206	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:15824206G>A	uc001iod.1	-	14	1357	c.1136C>T	c.(1135-1137)TCT>TTT	p.S379F	FAM188A_uc001ioe.1_Missense_Mutation_p.S206F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	379					apoptosis	nucleus	calcium ion binding			ovary(1)	1						GACAGTAAAAGATTCTGGACC	0.323													13	19					0	0	0.004007	0	0
CUBN	8029	broad.mit.edu	37	10	17157520	17157520	+	Missense_Mutation	SNP	G	C	C	rs143120669	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:17157520G>C	uc001ioo.2	-	7	722	c.670C>G	c.(670-672)CGC>GGC	p.R224G		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	224					cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity	p.R224C(1)		ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGGACACAGCGTGCCACAGAA	0.532													24	21					0	0	0.002780	0	0
ST8SIA6	338596	broad.mit.edu	37	10	17362936	17362936	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:17362936G>A	uc001ipd.2	-	8	1138	c.1138C>T	c.(1138-1140)CTC>TTC	p.L380F	ST8SIA6_uc010qce.1_RNA	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	380	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						TGAAGTTGGAGGATCTGGCTG	0.368													55	84					0	0	0.003610	0	0
SLC39A12	221074	broad.mit.edu	37	10	18270267	18270268	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:18270267_18270268GG>AA	uc001ipo.2	+	6	1224_1225	c.951_952GG>AA	c.(949-954)GTGGAG>GTAAAG	p.E318K	SLC39A12_uc001ipn.2_Missense_Mutation_p.E318K|SLC39A12_uc001ipp.2_Missense_Mutation_p.E318K|SLC39A12_uc010qck.1_Missense_Mutation_p.E184K	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	318	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GGCAGCTGGTGGAGATATTTCT	0.45													17	26					0	0	0.004672	0	0
PLXDC2	84898	broad.mit.edu	37	10	20436754	20436754	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:20436754G>A	uc001iqg.1	+	6	1343	c.706G>A	c.(706-708)GAT>AAT	p.D236N	PLXDC2_uc001iqh.1_Missense_Mutation_p.D187N|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	236	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						ACATCTCCAGGATAATTATAA	0.413													25	25					0	0	0.004656	0	0
GPR158	57512	broad.mit.edu	37	10	25464844	25464844	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:25464844G>A	uc001isj.2	+	1	555	c.495G>A	c.(493-495)CTG>CTA	p.L165L	LOC100128811_uc010qde.1_Silent_p.S36S	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	165	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GGAGCCTTCTGGAGGGCGAGC	0.637													6	35					0	0	0.001984	0	0
LOC387646	387646	broad.mit.edu	37	10	27539014	27539014	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:27539014G>A	uc001its.2	-	1	2222	c.379C>T	c.(379-381)CCT>TCT	p.P127S		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						GACTCTGGAGGAAGAGGTGGG	0.527													14	46					0	0	0.002450	0	0
ARMC4	55130	broad.mit.edu	37	10	28101521	28101521	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:28101521C>T	uc009xky.2	-	20	3153	c.3055G>A	c.(3055-3057)GAT>AAT	p.D1019N	ARMC4_uc010qds.1_Silent_p.R584R|ARMC4_uc010qdt.1_Missense_Mutation_p.D711N|ARMC4_uc001itz.2_Missense_Mutation_p.D1019N	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1019	ARM 10.						binding	p.D1019Y(1)		ovary(4)|skin(2)	6						TCCTGGAGATCCTGGTCAGGG	0.418													16	47					0	0	0.004990	0	0
NRP1	8829	broad.mit.edu	37	10	33559618	33559618	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:33559618C>T	uc001iwx.3	-	3	938	c.415G>A	c.(415-417)GAA>AAA	p.E139K	NRP1_uc001iwv.3_Missense_Mutation_p.E139K|NRP1_uc009xlz.2_Missense_Mutation_p.E139K|NRP1_uc001iww.3_Intron|NRP1_uc001iwy.3_Missense_Mutation_p.E139K|NRP1_uc001iwz.2_Missense_Mutation_p.E139K|NRP1_uc001ixa.2_Missense_Mutation_p.E139K|NRP1_uc001ixb.1_Missense_Mutation_p.E139K|NRP1_uc001ixc.1_Missense_Mutation_p.E139K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	139	CUB 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTGAAAATTTCATAACGTATG	0.318													25	27					0	0	0.001786	0	0
CCNY	219771	broad.mit.edu	37	10	35819114	35819114	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:35819114C>T	uc001iyw.3	+	7	702	c.522C>T	c.(520-522)TTC>TTT	p.F174F	CCNY_uc001iyu.3_Silent_p.F120F|CCNY_uc001iyv.3_Silent_p.F120F|CCNY_uc001iyx.3_Silent_p.F120F|CCNY_uc009xmb.2_Silent_p.F149F|CCNY_uc010qet.1_Silent_p.F41F	NM_145012	NP_659449	Q8ND76	CCNY_HUMAN	cyclin Y isoform 1	174	Cyclin N-terminal.				cell division|G2/M transition of mitotic cell cycle|positive regulation of cyclin-dependent protein kinase activity|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	cyclin-dependent protein kinase regulator activity|protein kinase binding				0						TTTACCGGTTCGTTCGGACAC	0.532													6	35					0	0	0.001984	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654270	43654270	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:43654270C>T	uc001jan.2	+	3	1104	c.769C>T	c.(769-771)CTC>TTC	p.L257F	CSGALNACT2_uc001jam.1_Missense_Mutation_p.L257F	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	257	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						TTTTGGACCTCTCATGAAAGT	0.393													9	43					0	0	0.006214	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654272	43654272	+	Silent	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:43654272C>A	uc001jan.2	+	3	1106	c.771C>A	c.(769-771)CTC>CTA	p.L257L	CSGALNACT2_uc001jam.1_Silent_p.L257L	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	257	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						TTGGACCTCTCATGAAAGTGA	0.393													8	42					0.000157383	0.000216	0.003080	1	0
ALOX5	240	broad.mit.edu	37	10	45907676	45907676	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:45907676G>A	uc001jce.2	+	4	568	c.469G>A	c.(469-471)GAT>AAT	p.D157N	ALOX5_uc009xmt.2_Missense_Mutation_p.D157N|ALOX5_uc010qfg.1_Missense_Mutation_p.D157N	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	157	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CTTGAGCATCGATGCCAAATG	0.463													17	42					0	0	0.008871	0	0
ZNF488	118738	broad.mit.edu	37	10	48371305	48371305	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:48371305C>T	uc001jex.2	+	2	935	c.773C>T	c.(772-774)TCG>TTG	p.S258L	ZNF488_uc001jey.2_Missense_Mutation_p.S151L	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	258					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCCACCACTTCGTGGGCCCTC	0.612													17	21					0	0	0.007413	0	0
FRMPD2	143162	broad.mit.edu	37	10	49386175	49386175	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:49386175G>A	uc001jgi.2	-	22	2917	c.2810C>T	c.(2809-2811)CCT>CTT	p.P937L	FRMPD2_uc001jgh.2_Missense_Mutation_p.P905L|FRMPD2_uc001jgj.2_Missense_Mutation_p.P915L|FRMPD2_uc001jgg.2_5'Flank|FRMPD2_uc001jgk.2_5'UTR	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	937					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AGGTGATGGAGGACAAGAAGA	0.418													7	6					0	0	0.008291	0	0
C10orf71	118461	broad.mit.edu	37	10	50531556	50531556	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:50531556C>T	uc010qgp.1	+	3	1305	c.966C>T	c.(964-966)GTC>GTT	p.V322V		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	322											0						AGCGCACAGTCTCTCCCTGCC	0.582													9	30					0	0	0.004482	0	0
ERCC6	2074	broad.mit.edu	37	10	50740841	50740841	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:50740841G>A	uc001jhs.3	-	2	324	c.170C>T	c.(169-171)TCT>TTT	p.S57F	PGBD3_uc009xoe.2_Missense_Mutation_p.S57F|PGBD3_uc001jhu.2_Missense_Mutation_p.S57F	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	57					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CCCCACAGCAGAGGTGGACAG	0.577								Direct_reversal_of_damage|NER					7	22					0	0	0.001984	0	0
SLC18A3	6572	broad.mit.edu	37	10	50820007	50820007	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:50820007C>T	uc001jhw.2	+	1	1661	c.1221C>T	c.(1219-1221)TTC>TTT	p.F407F	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	407	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						CGCTCGCCTTCCTGGTGGACG	0.642													5	21					0	0	0.001168	0	0
OGDHL	55753	broad.mit.edu	37	10	50946054	50946054	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:50946054G>A	uc001jie.2	-	19	2598	c.2456C>T	c.(2455-2457)TCC>TTC	p.S819F	OGDHL_uc009xog.2_Missense_Mutation_p.S846F|OGDHL_uc010qgt.1_Missense_Mutation_p.S762F|OGDHL_uc010qgu.1_Missense_Mutation_p.S610F	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	819					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGCCGGTGTGGAGCAGTTGAC	0.627													70	77					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	10	52390757	52390757	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:52390757G>A	uc001jjf.1	+	2		c.1450G>A								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		TCAAAATGCTGGCCAGGGGTT	0.478													6	7					0	0	0.001168	0	0
MBL2	4153	broad.mit.edu	37	10	54530483	54530483	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:54530483G>A	uc001jjt.2	-	2	316	c.251C>T	c.(250-252)CCT>CTT	p.P84L		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	84	Collagen-like.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						TGACCCAGAAGGCCCTGGATT	0.547													22	75					0	0	0.001882	0	0
PCDH15	65217	broad.mit.edu	37	10	55569295	55569295	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:55569295C>T	uc010qhu.1	-	36	4960	c.4565G>A	c.(4564-4566)AGA>AAA	p.R1522K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Silent_p.K1510K|PCDH15_uc010qht.1_Silent_p.K1503K	NM_001142770	NP_001136242	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-2 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTTTAATTTTCTTTGGCTCTT	0.403										HNSCC(58;0.16)			36	107					0	0	0.005524	0	0
PCDH15	65217	broad.mit.edu	37	10	55582720	55582720	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:55582720G>A	uc001jju.1	-	33	5161	c.4766C>T	c.(4765-4767)CCA>CTA	p.P1589L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1586L|PCDH15_uc010qhw.1_Missense_Mutation_p.P1549L|PCDH15_uc010qhx.1_Missense_Mutation_p.P1520L|PCDH15_uc010qhy.1_Missense_Mutation_p.P1596L|PCDH15_uc010qhz.1_Missense_Mutation_p.P1591L|PCDH15_uc010qia.1_Missense_Mutation_p.P1569L|PCDH15_uc010qib.1_Missense_Mutation_p.P1566L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1589	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGGTCTATTTGGAACTTTCCT	0.473										HNSCC(58;0.16)			12	41					0	0	0.002450	0	0
PCDH15	65217	broad.mit.edu	37	10	55582895	55582895	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:55582895C>T	uc001jju.1	-	33	4986	c.4591G>A	c.(4591-4593)GAA>AAA	p.E1531K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.E1528K|PCDH15_uc010qhw.1_Missense_Mutation_p.E1491K|PCDH15_uc010qhx.1_Missense_Mutation_p.E1462K|PCDH15_uc010qhy.1_Missense_Mutation_p.E1538K|PCDH15_uc010qhz.1_Missense_Mutation_p.E1533K|PCDH15_uc010qia.1_Missense_Mutation_p.E1511K|PCDH15_uc010qib.1_Missense_Mutation_p.E1508K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1531	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTTATGTTTTCCTTATAAAGG	0.368										HNSCC(58;0.16)			20	36					0	0	0.008871	0	0
PCDH15	65217	broad.mit.edu	37	10	55782729	55782729	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:55782729G>A	uc001jju.1	-	19	2844	c.2449C>T	c.(2449-2451)CCT>TCT	p.P817S	PCDH15_uc010qhq.1_Missense_Mutation_p.P822S|PCDH15_uc010qhr.1_Missense_Mutation_p.P817S|PCDH15_uc010qhs.1_Missense_Mutation_p.P829S|PCDH15_uc010qht.1_Missense_Mutation_p.P824S|PCDH15_uc010qhu.1_Missense_Mutation_p.P817S|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P817S|PCDH15_uc010qhw.1_Missense_Mutation_p.P780S|PCDH15_uc010qhx.1_Missense_Mutation_p.P746S|PCDH15_uc010qhy.1_Missense_Mutation_p.P822S|PCDH15_uc010qhz.1_Missense_Mutation_p.P817S|PCDH15_uc010qia.1_Missense_Mutation_p.P795S|PCDH15_uc010qib.1_Missense_Mutation_p.P795S|PCDH15_uc001jjw.2_Missense_Mutation_p.P817S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	817	Extracellular (Potential).|Cadherin 7.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTGAACACAGGACTGTTATCA	0.423										HNSCC(58;0.16)			11	48					0	0	0.008291	0	0
SLC16A9	220963	broad.mit.edu	37	10	61432607	61432607	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:61432607G>A	uc010qig.1	-	3	710	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	87	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CAGCCACCATGAAGCCACTGA	0.418													5	16					0	0	0.000602	0	0
ANK3	288	broad.mit.edu	37	10	61846602	61846602	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:61846602C>T	uc001jky.2	-	30	3773	c.3581G>A	c.(3580-3582)GGA>GAA	p.G1194E	ANK3_uc001jkw.2_Missense_Mutation_p.G328E|ANK3_uc009xpa.2_Missense_Mutation_p.G328E|ANK3_uc001jkx.2_Missense_Mutation_p.G372E|ANK3_uc010qih.1_Missense_Mutation_p.G1195E|ANK3_uc001jkz.3_Missense_Mutation_p.G1188E|ANK3_uc001jla.1_Missense_Mutation_p.G260E|ANK3_uc001jlb.1_Missense_Mutation_p.G712E	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1194					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCTTTGTTTCCAAGGATCTT	0.413													15	13					0	0	0.003163	0	0
MYPN	84665	broad.mit.edu	37	10	69961631	69961631	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:69961631A>G	uc001jnm.3	+	19	3724	c.3539A>G	c.(3538-3540)AAC>AGC	p.N1180S	MYPN_uc001jnn.3_Missense_Mutation_p.N905S|MYPN_uc001jno.3_Missense_Mutation_p.N1180S|MYPN_uc009xpt.2_Missense_Mutation_p.N1180S|MYPN_uc010qit.1_Missense_Mutation_p.N886S|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	1180	Interaction with ACTN.|Ig-like 5.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AAACTACAGAACTGCGGTGTT	0.448													33	22					0	0	0.002445	0	0
COL13A1	1305	broad.mit.edu	37	10	71678065	71678065	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:71678065G>A	uc001jpr.1	+	18	1557	c.1021G>A	c.(1021-1023)GGG>AGG	p.G341R	COL13A1_uc001jqj.1_Missense_Mutation_p.G341R|COL13A1_uc001jps.1_Missense_Mutation_p.G312R|COL13A1_uc001jpt.1_Missense_Mutation_p.G300R|COL13A1_uc001jpu.1_Missense_Mutation_p.G322R|COL13A1_uc001jpv.1_Missense_Mutation_p.G341R|COL13A1_uc001jpx.1_Missense_Mutation_p.G319R|COL13A1_uc001jpw.1_Missense_Mutation_p.G288R|COL13A1_uc001jpy.1_Missense_Mutation_p.G279R|COL13A1_uc001jpz.1_Missense_Mutation_p.G284R|COL13A1_uc001jqa.1_Missense_Mutation_p.G281R|COL13A1_uc001jqc.1_Missense_Mutation_p.G341R|COL13A1_uc001jqb.1_Missense_Mutation_p.G290R|COL13A1_uc001jql.2_Missense_Mutation_p.G341R|COL13A1_uc001jqd.1_Missense_Mutation_p.G329R|COL13A1_uc001jqe.1_Missense_Mutation_p.G324R|COL13A1_uc001jqf.1_Missense_Mutation_p.G322R|COL13A1_uc001jqg.1_Missense_Mutation_p.G319R|COL13A1_uc001jqh.1_Missense_Mutation_p.G341R|COL13A1_uc001jqi.1_Missense_Mutation_p.G341R|COL13A1_uc010qjf.1_Missense_Mutation_p.G131R|COL13A1_uc001jqk.1_Missense_Mutation_p.G179R	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	341	Extracellular (Potential).|Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TGCCGTGGCTGGGATGAAGGT	0.592													9	7					0	0	0.001855	0	0
AIFM2	84883	broad.mit.edu	37	10	71880917	71880917	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:71880917G>A	uc010qjg.1	-	3	358	c.345C>T	c.(343-345)TTC>TTT	p.F115F	AIFM2_uc001jqp.1_Silent_p.F115F	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	115					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						ACTTGCCCGGGAAGGGCCCAG	0.498													28	24					0	0	0.001786	0	0
LRRC20	55222	broad.mit.edu	37	10	72083683	72083683	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:72083683G>A	uc001jqx.1	-	4	558	c.336C>T	c.(334-336)TTC>TTT	p.F112F	LRRC20_uc001jqy.1_Intron|LRRC20_uc001jqz.1_Silent_p.F62F	NM_207119	NP_997002	Q8TCA0	LRC20_HUMAN	leucine rich repeat containing 20 isoform 1	112	LRR 3.										0						GCTGCTCAGGGAAGTCCTGGA	0.647													10	44					0	0	0.001855	0	0
CDH23	64072	broad.mit.edu	37	10	73453962	73453962	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:73453962C>T	uc001jrx.3	+	20	2612	c.2235C>T	c.(2233-2235)ATC>ATT	p.I745I	CDH23_uc001jry.2_Silent_p.I361I|CDH23_uc001jrz.2_Silent_p.I361I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	745	Cadherin 7.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACATCCTCATCGTTCGCGCAG	0.632													6	15					0	0	0.003080	0	0
SPOCK2	9806	broad.mit.edu	37	10	73830155	73830155	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:73830155C>T	uc001jso.1	-	5	834	c.389G>A	c.(388-390)GGA>GAA	p.G130E	SPOCK2_uc001jsp.2_Missense_Mutation_p.G130E	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	130	Kazal-like.				extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						GTCTTTGTTTCCATGGAGTTT	0.602													13	31					0	0	0.003163	0	0
CBARA1	10367	broad.mit.edu	37	10	74128021	74128021	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:74128021G>A	uc001jtb.1	-	13	1502	c.1369C>T	c.(1369-1371)CGC>TGC	p.R457C	CBARA1_uc010qjw.1_Missense_Mutation_p.R257C|CBARA1_uc010qjx.1_Missense_Mutation_p.R257C|CBARA1_uc009xqo.1_RNA	NM_006077	NP_006068	Q9BPX6	MICU1_HUMAN	calcium binding atopy-related autoantigen 1	455					calcium ion import|defense response|elevation of mitochondrial calcium ion concentration	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			ovary(1)	1						TGCATGAGGCGAGTGAAACCC	0.527													10	17					0	0	0.000978	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74714267	74714267	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:74714267C>T	uc001jtf.1	-	1	244	c.177G>A	c.(175-177)GGG>GGA	p.G59G	PLA2G12B_uc009xqt.1_5'UTR|PLA2G12B_uc010qjz.1_Silent_p.G59G	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	59					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					CTCCATTCTTCCCTCCCAGCA	0.532													38	136					0	0	0.007835	0	0
VCL	7414	broad.mit.edu	37	10	75857083	75857083	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:75857083G>A	uc001jwd.2	+	13	1959	c.1865G>A	c.(1864-1866)AGG>AAG	p.R622K	VCL_uc009xrr.2_Missense_Mutation_p.R371K|VCL_uc010qky.1_Missense_Mutation_p.R529K|VCL_uc001jwe.2_Missense_Mutation_p.R622K|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	622	N-terminal globular head.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					GCGCCTAACAGGGAAGAGGTG	0.502													13	47					0	0	0.001855	0	0
ZCCHC24	219654	broad.mit.edu	37	10	81192376	81192376	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:81192376G>A	uc001kak.2	-	2	572	c.385C>T	c.(385-387)CCA>TCA	p.P129S	ZCCHC24_uc010qlr.1_Missense_Mutation_p.P69L|ZCCHC24_uc009xrw.2_RNA	NM_153367	NP_699198	Q8N2G6	ZCH24_HUMAN	zinc finger, CCHC domain containing 24	129							nucleic acid binding|zinc ion binding			breast(1)	1						TAGTTGGGTGGGGGCCGCTTG	0.632													19	28					0	0	0.002299	0	0
DYDC2	84332	broad.mit.edu	37	10	82122302	82122302	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:82122302C>T	uc001kca.1	+	3	483	c.103C>T	c.(103-105)CAC>TAC	p.H35Y	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.H35Y	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	35							protein binding				0			Colorectal(32;0.229)			ATACCTGGCTCACTGGCTTTA	0.498													31	33					0	0	0.002445	0	0
CDHR1	92211	broad.mit.edu	37	10	85974117	85974117	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:85974117C>T	uc001kcv.2	+	17	2320	c.2320C>T	c.(2320-2322)CCC>TCC	p.P774S	CDHR1_uc001kcw.2_Intron|CDHR1_uc009xst.2_Missense_Mutation_p.P478S|CDHR1_uc001kcx.2_Missense_Mutation_p.P88S	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	774	Cytoplasmic (Potential).|Pro-rich.				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						AGAGAAACCTCCCAATGAGAA	0.617													16	58					0	0	0.004007	0	0
LRIT1	26103	broad.mit.edu	37	10	86001151	86001152	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:86001151_86001152CC>TT	uc001kcz.1	-	1	66_67	c.44_45GG>AA	c.(43-45)TGG>TAA	p.W15*		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	15						integral to endoplasmic reticulum membrane					0						CCTGGGGGGGCCACGCAAGGGC	0.668													12	2					0	0	0.004672	0	0
GRID1	2894	broad.mit.edu	37	10	87362365	87362365	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:87362365C>T	uc001kdl.1	-	16	2796	c.2695G>A	c.(2695-2697)GAG>AAG	p.E899K	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.E470K|uc001kdk.1_Intron	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	899	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GCCGAGAGCTCAATCGACGCT	0.597										Multiple Myeloma(13;0.14)			6	5					0	0	0.001168	0	0
WAPAL	23063	broad.mit.edu	37	10	88260189	88260189	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:88260189G>A	uc001kdo.2	-	3	1253	c.811C>T	c.(811-813)CGA>TGA	p.R271*	WAPAL_uc001kdn.2_Nonsense_Mutation_p.R314*|WAPAL_uc009xsw.2_Nonsense_Mutation_p.R271*	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	271	Mediates interaction with the cohesin complex.|Potential.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						TTTTCCAATCGATTTTTAAAA	0.363													16	32					0	0	0.003163	0	0
HTR7	3363	broad.mit.edu	37	10	92509065	92509065	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:92509065G>A	uc001kha.2	-	2	1069	c.826C>T	c.(826-828)CCT>TCT	p.P276S	HTR7_uc001kgz.2_Missense_Mutation_p.P276S|HTR7_uc001khb.2_Missense_Mutation_p.P276S	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	276	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	GGGAAGCCAGGAAACTTGTGT	0.512													20	19					0	0	0.008871	0	0
PPP1R3C	5507	broad.mit.edu	37	10	93390068	93390068	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:93390068G>A	uc001kho.2	-	2	702	c.570C>T	c.(568-570)TTC>TTT	p.F190F		NM_005398	NP_005389	Q9UQK1	PPR3C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	190	Interaction with EPM2A.|CBM21.						protein serine/threonine phosphatase activity			breast(1)	1		Colorectal(252;0.235)				TCCAAGAATCGAAAGTGATAC	0.413													16	19					0	0	0.004007	0	0
MYOF	26509	broad.mit.edu	37	10	95079655	95079655	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:95079655C>T	uc001kin.2	-	49	5695	c.5572G>A	c.(5572-5574)GAA>AAA	p.E1858K	MYOF_uc001kio.2_Missense_Mutation_p.E1845K|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1858	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						CAGAGTTGTTCGGCTGGAAGG	0.373													18	15					0	0	0.008871	0	0
LGI1	9211	broad.mit.edu	37	10	95556907	95556907	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:95556907G>A	uc001kjc.3	+	8	1357	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	LGI1_uc010qnv.1_Missense_Mutation_p.E293K|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	341	EAR 3.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				ATTCAAGATTGAAAACAACTG	0.343													25	27					0	0	0.002096	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466555	96466555	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96466555C>T	uc001kjv.3	+	5	983	c.657C>T	c.(655-657)TTC>TTT	p.F219F	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	219					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GCAATAATTTCCCTGCTCTCA	0.299													8	7					0	0	0.006214	0	0
CYP2C18	1562	broad.mit.edu	37	10	96484284	96484284	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96484284C>T	uc001kjv.3	+	7	1469	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	CYP2C18_uc001kjw.3_Silent_p.I322I|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	381					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		ACTACCTCATCCCCAAGGTAA	0.458													12	66					0	0	0.002450	0	0
CYP2C19	1557	broad.mit.edu	37	10	96493119	96493119	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96493119G>A	uc010qny.1	+	6	884	c.26G>A	c.(25-27)AGA>AAA	p.R9K	CYP2C18_uc001kjv.3_Silent_p.E405E|CYP2C18_uc001kjw.3_Silent_p.E346E|CYP2C19_uc009xus.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	Error:Variant_position_missing_in_P33261_after_alignment					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CCAACCCAGAGATGTTTGACC	0.403													11	50					0	0	0.000978	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535151	96535151	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96535151C>T	uc010qnz.1	+	3	336	c.336C>T	c.(334-336)ATC>ATT	p.I112I	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Silent_p.I90I	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	112					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TGTTAGGAATCGTTTTCAGCA	0.532													6	40					0	0	0.003080	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535195	96535195	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96535195C>T	uc010qnz.1	+	3	380	c.380C>T	c.(379-381)TCC>TTC	p.S127F	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Missense_Mutation_p.S105F	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	127					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CGGCGTTTCTCCCTCATGACG	0.507													15	58					0	0	0.006122	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540335	96540335	+	Silent	SNP	C	T	T	rs145272564		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96540335C>T	uc010qnz.1	+	4	561	c.561C>T	c.(559-561)TTC>TTT	p.F187F	CYP2C19_uc009xus.1_Silent_p.F52F|CYP2C19_uc010qny.1_Silent_p.F165F	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	187					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AGAAACGTTTCGATTATAAAG	0.403													19	81					0	0	0.006122	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602681	96602681	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:96602681C>T	uc010qnz.1	+	7	1049	c.1049C>T	c.(1048-1050)GCT>GTT	p.A350V	CYP2C19_uc010qny.1_Missense_Mutation_p.A328V	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	350					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TACACAGATGCTGTGGTGCAC	0.542													53	42					0	0	0.003610	0	0
TLL2	7093	broad.mit.edu	37	10	98180820	98180820	+	Splice_Site	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:98180820T>G	uc001kml.1	-	7	1044	c.818_splice	c.e7-1	p.G273_splice	TLL2_uc009xvf.1_Splice_Site_p.G221_splice	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor						cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		ACTCCTGACCTGTGACACAAC	0.498													12	62					0	0	0.001368	0	0
SLIT1	6585	broad.mit.edu	37	10	98764533	98764533	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:98764533G>A	uc001kmw.2	-	33	3879	c.3627C>T	c.(3625-3627)AAC>AAT	p.N1209N		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1209	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CAATGTGGTCGTTGTCCCCGT	0.592													5	48					0	0	0.000602	0	0
SLIT1	6585	broad.mit.edu	37	10	98790525	98790526	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:98790525_98790526GG>AA	uc001kmw.2	-	25	2822_2823	c.2570_2571CC>TT	c.(2569-2571)TCC>TTT	p.S857F		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	857					axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GGTGAGACAGGGAGGTCACGTC	0.545													46	18					0	0	0.004672	0	0
ABCC2	1244	broad.mit.edu	37	10	101601754	101601754	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:101601754G>A	uc001kqf.2	+	26	3784	c.3645G>A	c.(3643-3645)GGG>GGA	p.G1215G		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	1215	Helical; Name=16; (By similarity).|ABC transmembrane type-1 2.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AGCTGGTTGGGAACCTGACTG	0.493													48	34					0	0	0.003610	0	0
WNT8B	7479	broad.mit.edu	37	10	102239735	102239735	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:102239735C>T	uc001krb.2	+	3	321	c.207C>T	c.(205-207)GCC>GCT	p.A69A		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	69					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		CTGAGAGAGCCCTGCAGCTGT	0.572													13	32					0	0	0.001368	0	0
GBF1	8729	broad.mit.edu	37	10	104139304	104139304	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:104139304C>G	uc001kux.1	+	35	4909	c.4669C>G	c.(4669-4671)CGG>GGG	p.R1557G	GBF1_uc001kuy.1_Missense_Mutation_p.R1553G|GBF1_uc001kuz.1_Missense_Mutation_p.R1554G	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1557					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CTGCGATGCCCGGCGCCAGGT	0.552													43	44					0	0	0.003610	0	0
PSD	5662	broad.mit.edu	37	10	104175860	104175860	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:104175860G>A	uc001kvg.1	-	3	1198	c.671C>T	c.(670-672)TCC>TTC	p.S224F	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.S224F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	224					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		TTCCCGGGGGGAGGACCAGGT	0.438													5	4					0	0	0.001984	0	0
OBFC1	79991	broad.mit.edu	37	10	105648836	105648836	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:105648836G>A	uc001kxl.2	-	8	1018	c.943C>T	c.(943-945)CCA>TCA	p.P315S	OBFC1_uc001kxm.2_Missense_Mutation_p.P315S|OBFC1_uc001kxn.2_RNA	NM_024928	NP_079204	Q9H668	STN1_HUMAN	oligonucleotide/oligosaccharide-binding fold	315					positive regulation of DNA replication|telomere maintenance via telomere lengthening		protein binding|single-stranded telomeric DNA binding			ovary(1)	1		Colorectal(252;0.178)		Epithelial(162;3.39e-10)|all cancers(201;1.32e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0151)		TTACGATTTGGTTTCTGGCAG	0.383													30	28					0	0	0.003271	0	0
CCDC147	159686	broad.mit.edu	37	10	106118186	106118186	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:106118186G>A	uc001kyh.2	+	2	231	c.97G>A	c.(97-99)GAC>AAC	p.D33N		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	33										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACTTTCTGGAGACAAAAGTTT	0.378													13	13					0	0	0.001368	0	0
GPAM	57678	broad.mit.edu	37	10	113915751	113915751	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:113915751A>T	uc009xxy.1	-	20	2380	c.2182T>A	c.(2182-2184)TTG>ATG	p.L728M	GPAM_uc001kzp.2_Missense_Mutation_p.L728M|GPAM_uc001kzq.1_3'UTR	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	728	Mitochondrial intermembrane (Potential).|Mitochondrial intermembrane (Potential).				phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		GCCTCCAGCAAAGGCCCAAGG	0.483													6	15					0	0	0.001168	0	0
ZDHHC6	64429	broad.mit.edu	37	10	114192030	114192030	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:114192030C>G	uc001kzv.2	-	10	1530	c.1106G>C	c.(1105-1107)GGA>GCA	p.G369A	ZDHHC6_uc001kzw.2_Missense_Mutation_p.G365A	NM_022494	NP_071939	Q9H6R6	ZDHC6_HUMAN	zinc finger, DHHC-type containing 6	369						integral to membrane	acyltransferase activity|zinc ion binding				0		Colorectal(252;0.198)		Epithelial(162;0.0291)|all cancers(201;0.117)		AATTTTGTCTCCATATAACCA	0.279													11	23					0	0	0.008291	0	0
HABP2	3026	broad.mit.edu	37	10	115343020	115343020	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:115343020G>A	uc001lai.3	+	10	1243	c.1140G>A	c.(1138-1140)CTG>CTA	p.L380L	HABP2_uc010qrz.1_RNA	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	380	Peptidase S1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		ACCAGGACCTGAAGAAAGAAG	0.373													13	48					0	0	0.004990	0	0
NRAP	4892	broad.mit.edu	37	10	115410288	115410288	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:115410288T>C	uc001laj.2	-	8	856	c.692A>G	c.(691-693)GAC>GGC	p.D231G	NRAP_uc001lak.2_Missense_Mutation_p.D231G|NRAP_uc001lal.3_Missense_Mutation_p.D231G	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	231	Nebulin 4.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TTGTTCATAGTCCTCTGTGTA	0.443													26	19					0	0	0.005443	0	0
NHLRC2	374354	broad.mit.edu	37	10	115636427	115636427	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:115636427C>T	uc001lax.1	+	3	691	c.479C>T	c.(478-480)TCC>TTC	p.S160F		NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	160	Thioredoxin.				cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		CTAGAAGTTTCCTGCTGGCCA	0.393													28	32					0	0	0.002445	0	0
VWA2	340706	broad.mit.edu	37	10	116032518	116032518	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:116032518G>A	uc001lbl.1	+	6	712	c.391G>A	c.(391-393)GAA>AAA	p.E131K	VWA2_uc001lbk.1_Missense_Mutation_p.E131K|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	131	VWFA 1.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		CACGGAGACGGAACTTGCTCT	0.517													11	36					0	0	0.002450	0	0
VWA2	340706	broad.mit.edu	37	10	116032655	116032655	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:116032655G>A	uc001lbl.1	+	6	849	c.528G>A	c.(526-528)AGG>AGA	p.R176R	VWA2_uc001lbk.1_Silent_p.R176R|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	176	VWFA 1.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		TGAAGGAAAGGGGTGTCACTG	0.582													9	15					0	0	0.001368	0	0
SLC18A2	6571	broad.mit.edu	37	10	119003718	119003718	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:119003718G>A	uc001ldd.1	+	3	389	c.358G>A	c.(358-360)GAA>AAA	p.E120K	SLC18A2_uc009xyy.1_5'UTR	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	120	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	CTGTCCCAGTGAAGACAAAGA	0.527													23	23					0	0	0.001882	0	0
FGFR2	2263	broad.mit.edu	37	10	123245021	123245021	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:123245021C>T	uc010qtk.1	-	17	2730	c.2083G>A	c.(2083-2085)GAG>AAG	p.E695K	FGFR2_uc010qtg.1_Missense_Mutation_p.E583K|FGFR2_uc010qth.1_Missense_Mutation_p.E580K|FGFR2_uc010qti.1_Missense_Mutation_p.E606K|FGFR2_uc010qtj.1_Missense_Mutation_p.E696K|FGFR2_uc010qtl.1_Missense_Mutation_p.E579K|FGFR2_uc010qtm.1_Missense_Mutation_p.E578K|FGFR2_uc001lfl.3_Missense_Mutation_p.E696K|FGFR2_uc001lfm.2_Missense_Mutation_p.E607K|FGFR2_uc001lfg.3_Missense_Mutation_p.E303K|FGFR2_uc001lfk.1_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	695	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GTGAAGATCTCCCACATTAAC	0.517		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				15	33					0	0	0.003163	0	0
DMBT1	1755	broad.mit.edu	37	10	124339144	124339144	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:124339144C>T	uc001lgk.1	+	10	836	c.730C>T	c.(730-732)CGA>TGA	p.R244*	DMBT1_uc001lgl.1_Nonsense_Mutation_p.R244*|DMBT1_uc001lgm.1_Nonsense_Mutation_p.R244*|DMBT1_uc009xzz.1_Nonsense_Mutation_p.R244*|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Nonsense_Mutation_p.R96*	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	244	SRCR 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CGACAGGTGTCGAGGCCGAGT	0.567													68	213					0	0	0.003610	0	0
DMBT1	1755	broad.mit.edu	37	10	124345579	124345579	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:124345579C>T	uc001lgk.1	+	16	1569	c.1463C>T	c.(1462-1464)TCT>TTT	p.S488F	DMBT1_uc001lgl.1_Missense_Mutation_p.S478F|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.S488F|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	488					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCTGTAGGATCTGAATCCAGT	0.527													112	117					0	0	0.003610	0	0
DMBT1	1755	broad.mit.edu	37	10	124345750	124345750	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:124345750G>A	uc001lgk.1	+	16	1740	c.1634G>A	c.(1633-1635)GGA>GAA	p.G545E	DMBT1_uc001lgl.1_Missense_Mutation_p.G535E|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.G545E|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	545	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TTGGCCCCAGGAAATGCCCGG	0.617													83	90					0	0	0.003610	0	0
DMBT1	1755	broad.mit.edu	37	10	124345822	124345822	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:124345822A>T	uc001lgk.1	+	16	1812	c.1706A>T	c.(1705-1707)TAC>TTC	p.Y569F	DMBT1_uc001lgl.1_Missense_Mutation_p.Y559F|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.Y569F|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	569	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AATGAGTCCTACTTGTGGAGC	0.587													24	47					0	0	0.002780	0	0
DMBT1	1755	broad.mit.edu	37	10	124402684	124402684	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:124402684C>T	uc001lgk.1	+	53	7118	c.7012C>T	c.(7012-7014)CGC>TGC	p.R2338C	DMBT1_uc001lgl.1_Missense_Mutation_p.R2328C|DMBT1_uc001lgm.1_Missense_Mutation_p.R1710C|DMBT1_uc009xzz.1_Missense_Mutation_p.R2337C|DMBT1_uc010qtx.1_Missense_Mutation_p.R1058C|DMBT1_uc009yab.1_Missense_Mutation_p.R1041C|DMBT1_uc009yac.1_Missense_Mutation_p.R632C	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2338	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GCCATCTCTTCGCATTGCCCG	0.567													21	44					0	0	0.001523	0	0
GPR26	2849	broad.mit.edu	37	10	125434403	125434403	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:125434403C>T	uc001lhh.2	+	2	791	c.738C>T	c.(736-738)TTC>TTT	p.F246F		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	246	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				TCAGCACCTTCATAGGGACCT	0.562													11	16					0	0	0.000978	0	0
CPXM2	119587	broad.mit.edu	37	10	125528107	125528107	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:125528107C>T	uc001lhk.1	-	9	1559	c.1234G>A	c.(1234-1236)GAG>AAG	p.E412K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	412					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CGCGTCTCCTCCACCAGGTGG	0.627													35	32					0	0	0.003271	0	0
CPXM2	119587	broad.mit.edu	37	10	125558698	125558698	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:125558698G>A	uc001lhk.1	-	5	996	c.671C>T	c.(670-672)TCC>TTC	p.S224F	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	224	F5/8 type C.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GACCTTATAGGATGTCACCCA	0.383													29	92					0	0	0.002096	0	0
LHPP	64077	broad.mit.edu	37	10	126172829	126172829	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:126172829C>T	uc001lhs.1	+	2	267	c.247C>T	c.(247-249)CCG>TCG	p.P83S	LHPP_uc001lht.1_Missense_Mutation_p.P83S|LHPP_uc009yai.1_Missense_Mutation_p.P83S	NM_022126	NP_071409	Q9H008	LHPP_HUMAN	phospholysine phosphohistidine inorganic	83					protein dephosphorylation	cytosol|nucleus	inorganic diphosphatase activity|magnesium ion binding|phosphohistidine phosphatase activity|protein homodimerization activity				0		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.163)|Colorectal(40;0.187)		GGTGACCGCCCCGGCACCAGC	0.632													4	39					0	0	0.001168	0	0
C10orf137	26098	broad.mit.edu	37	10	127436490	127436490	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:127436490C>T	uc001liq.1	+	21	3325	c.3032C>T	c.(3031-3033)TCA>TTA	p.S1011L	C10orf137_uc001lin.2_Missense_Mutation_p.S977L|C10orf137_uc001lio.1_Missense_Mutation_p.S977L|C10orf137_uc001lip.1_Missense_Mutation_p.S715L|C10orf137_uc001lis.1_Missense_Mutation_p.S337L|C10orf137_uc001lit.1_5'Flank	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	1011					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GATGTGGATTCAGTGTCTGCT	0.458													25	29					0	0	0.003330	0	0
DOCK1	1793	broad.mit.edu	37	10	129183058	129183058	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:129183058C>T	uc001ljt.2	+	38	3813	c.3749C>T	c.(3748-3750)TCG>TTG	p.S1250L	DOCK1_uc010qun.1_Missense_Mutation_p.S1271L|DOCK1_uc009yaq.2_Missense_Mutation_p.S245L	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1250	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding	p.S1250L(1)		central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CCTTAGTGGTCGGAGGATGTG	0.622													12	43					0	0	0.000978	0	0
DOCK1	1793	broad.mit.edu	37	10	129242485	129242485	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:129242485C>T	uc001ljt.2	+	50	5356	c.5292C>T	c.(5290-5292)TCC>TCT	p.S1764S	DOCK1_uc010qun.1_Silent_p.S1785S|DOCK1_uc009yaq.2_Missense_Mutation_p.P764S	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1764					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CACCGTCCTCCCAGCAAACAC	0.577													3	10					0	0	0.000248	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133930599	133930599	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:133930599G>A	uc001lkx.3	+	2	154	c.154G>A	c.(154-156)GAG>AAG	p.E52K		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGTGGAACGCGAGAAGAACCA	0.562													19	20					0	0	0.001523	0	0
MTG1	92170	broad.mit.edu	37	10	135213098	135213098	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:135213098C>T	uc001lnd.2	+	6	590	c.486C>T	c.(484-486)TCC>TCT	p.S162S	MTG1_uc010qve.1_Intron	NM_138384	NP_612393	Q9BT17	MTG1_HUMAN	GTP_binding protein precursor	162	G.					mitochondrion	GTP binding|protein binding			skin(1)	1		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|all cancers(32;1.69e-06)|Epithelial(32;1.94e-06)		TCATCAACTCCCTCCGGAGGC	0.602													12	54					0	0	0.003163	0	0
FRG2B	441581	broad.mit.edu	37	10	135439024	135439024	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:135439024T>A	uc010qvg.1	-	4	469	c.416A>T	c.(415-417)GAG>GTG	p.E139V		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	139						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		ATCACAGGTCTCCTGGATTTC	0.522													24	68					0	0	0.002299	0	0
EPS8L2	64787	broad.mit.edu	37	11	723275	723275	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:723275C>T	uc001lqt.2	+	15	1623	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F	EPS8L2_uc001lqu.2_Missense_Mutation_p.S459F|EPS8L2_uc010qwk.1_Missense_Mutation_p.S475F|EPS8L2_uc001lqv.2_Missense_Mutation_p.S414F|EPS8L2_uc001lqw.2_Missense_Mutation_p.S71F|EPS8L2_uc001lqx.2_Missense_Mutation_p.S71F|EPS8L2_uc001lqy.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	459						cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ATAAGAAACTCCCAGAAGCAC	0.632											OREG0020659	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	9					0	0	0.000978	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606150	1606150	+	Silent	SNP	G	A	A	rs148824156	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:1606150G>A	uc001ltu.1	-	1	364	c.330C>T	c.(328-330)GGC>GGT	p.G110G	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	110	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCCCACAAGAGCCACAGCCCC	0.667													13	3					0	0	0.006122	0	0
TSSC4	10078	broad.mit.edu	37	11	2424460	2424460	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:2424460C>T	uc001lwj.2	+	4	958	c.597C>T	c.(595-597)TCC>TCT	p.S199S	TSSC4_uc001lwi.2_Silent_p.S135S|TSSC4_uc001lwk.2_Silent_p.S199S|TSSC4_uc001lwl.2_Silent_p.S199S	NM_005706	NP_005697	Q9Y5U2	TSSC4_HUMAN	tumor suppressing subtransferable candidate 4	199											0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.00145)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACTGCGTGTCCTCCTTCAACC	0.642													126	71					0	0	0.003610	0	0
TRIM68	55128	broad.mit.edu	37	11	4621530	4621530	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:4621530G>A	uc001lzf.1	-	7	1672	c.1434C>T	c.(1432-1434)ATC>ATT	p.I478I	TRIM68_uc001lzg.1_Silent_p.I255I|TRIM68_uc010qyj.1_RNA	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	478	B30.2/SPRY.				protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		CCAGGGAGCAGATGGCCAGAG	0.577													18	4					0	0	0.001523	0	0
OR51E2	81285	broad.mit.edu	37	11	4703590	4703590	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:4703590C>T	uc001lzk.2	-	2	596	c.352G>A	c.(352-354)GCC>ACC	p.A118T		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CGGTCAAAGGCCATGGCCAGC	0.537													12	9					0	0	0.000978	0	0
OR51B6	390058	broad.mit.edu	37	11	5372760	5372760	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:5372760C>T	uc010qzb.1	+	1	23	c.23C>T	c.(22-24)TCC>TTC	p.S8F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGTCTGCTTCCACCTTCCAG	0.448													14	7					0	0	0.004990	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530396	5530396	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:5530396G>A	uc001may.1	-	2	479	c.393C>T	c.(391-393)GCC>GCT	p.A131A	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	131										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTAAGCTAAAGGCAGGGGGCC	0.612													10	8					0	0	0.001855	0	0
OR56B4	196335	broad.mit.edu	37	11	6129686	6129686	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:6129686A>G	uc010qzx.1	+	1	678	c.678A>G	c.(676-678)GTA>GTG	p.V226V		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTATGCTGTAATCCTTCACT	0.473													36	24					0	0	0.004289	0	0
CCKBR	887	broad.mit.edu	37	11	6290959	6290959	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:6290959G>A	uc001mcp.2	+	2	405	c.212G>A	c.(211-213)GGA>GAA	p.G71E	CCKBR_uc001mcq.2_5'UTR|CCKBR_uc001mcr.2_Missense_Mutation_p.G71E|CCKBR_uc001mcs.2_Missense_Mutation_p.G71E	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	71	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	AGCGTTGGAGGAAATATGCTC	0.557													40	22					0	0	0.008740	0	0
DNHD1	144132	broad.mit.edu	37	11	6588704	6588704	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:6588704G>A	uc001mdw.3	+	36	12529	c.11965G>A	c.(11965-11967)GAA>AAA	p.E3989K	DNHD1_uc001mea.3_Missense_Mutation_p.E258K|DNHD1_uc001meb.2_Missense_Mutation_p.E257K|DNHD1_uc001mec.2_Missense_Mutation_p.E257K|DNHD1_uc010rao.1_Missense_Mutation_p.E247K|DNHD1_uc009yfg.2_5'Flank	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	3989					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		AGCCTGGCATGAATGTGAGAT	0.602													5	4					0	0	0.001168	0	0
DCHS1	8642	broad.mit.edu	37	11	6653573	6653573	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:6653573C>T	uc001mem.1	-	6	3580	c.3170G>A	c.(3169-3171)CGG>CAG	p.R1057Q		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1057	Cadherin 10.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGTGCTGCCCGCACCCATAG	0.597													20	9					0	0	0.002780	0	0
RBMXL2	27288	broad.mit.edu	37	11	7110495	7110495	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:7110495G>A	uc001mfc.2	+	1	331	c.144G>A	c.(142-144)TCG>TCA	p.S48S		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	48	RRM.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CCAACAAGTCGAGGGGCTTCG	0.582													9	1					0	0	0.006214	0	0
DENND5A	23258	broad.mit.edu	37	11	9202465	9202465	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:9202465A>G	uc001mhl.2	-	6	1559	c.1304T>C	c.(1303-1305)CTG>CCG	p.L435P	DENND5A_uc010rbw.1_Missense_Mutation_p.L435P|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	435										liver(1)	1						CAGCCTCTTCAGCTTGGAGGC	0.498													48	30					0	0	0.003610	0	0
SBF2	81846	broad.mit.edu	37	11	10015515	10015515	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:10015515G>A	uc001mib.2	-	10	1144	c.1006C>T	c.(1006-1008)CAT>TAT	p.H336Y	SBF2_uc001mif.3_Missense_Mutation_p.H92Y	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	336					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GGAAAAGCATGATCTGCTACT	0.289													10	8					0	0	0.001855	0	0
COPB1	1315	broad.mit.edu	37	11	14508035	14508035	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:14508035G>A	uc001mli.2	-	7	1022	c.715C>T	c.(715-717)CCA>TCA	p.P239S	COPB1_uc001mlg.2_Missense_Mutation_p.P239S|COPB1_uc001mlh.2_Missense_Mutation_p.P239S	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	239					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						CTTTCTGATGGATTAGCATGA	0.398													32	19					0	0	0.002445	0	0
TPH1	7166	broad.mit.edu	37	11	18048056	18048056	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:18048056G>A	uc001mnp.2	-	6	810	c.784C>T	c.(784-786)CCC>TCC	p.P262S	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	262					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	GTATAGAAGGGATCTGAACTG	0.383													17	9					0	0	0.008871	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955842	18955842	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:18955842G>A	uc001mpg.2	-	1	708	c.490C>T	c.(490-492)CTG>TTG	p.L164L		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	164	Helical; Name=4; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CCACTGAACAGGAAGCCACAT	0.562													12	47					0	0	0.001368	0	0
DBX1	120237	broad.mit.edu	37	11	20178065	20178065	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:20178065C>T	uc001mpw.1	-	4	844	c.844G>A	c.(844-846)GAA>AAA	p.E282K		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	243					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GACAGGAGTTCGCGCTCCTTG	0.622													8	11					0	0	0.006214	0	0
NELL1	4745	broad.mit.edu	37	11	20805242	20805242	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:20805242C>T	uc001mqe.2	+	3	354	c.201C>T	c.(199-201)ATC>ATT	p.I67I	NELL1_uc001mqf.2_Silent_p.I67I|NELL1_uc009yid.2_Silent_p.I95I|NELL1_uc010rdo.1_Silent_p.I67I|NELL1_uc010rdp.1_5'UTR	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	67					cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AAAGAGAGATCCATGCAGCTC	0.279													15	12					0	0	0.006122	0	0
MPPED2	744	broad.mit.edu	37	11	30439117	30439117	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:30439117C>T	uc001msr.2	-	4	720	c.600G>A	c.(598-600)TGG>TGA	p.W200*	MPPED2_uc001msq.3_Nonsense_Mutation_p.W200*|MPPED2_uc009yji.2_Nonsense_Mutation_p.W74*	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	200					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						GGATGAGGTTCCACTTGTCCA	0.498													17	8					0	0	0.001523	0	0
QSER1	79832	broad.mit.edu	37	11	32979458	32979458	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:32979458C>T	uc001mty.2	+	8	4675	c.4408C>T	c.(4408-4410)CCT>TCT	p.P1470S	QSER1_uc001mtz.1_Missense_Mutation_p.P1231S|QSER1_uc001mua.2_Missense_Mutation_p.P975S	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	1470										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					AACTTCTGATCCTCTAGCATC	0.363													11	5					0	0	0.001368	0	0
OR4C3	256144	broad.mit.edu	37	11	48347047	48347047	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:48347047C>T	uc010rhv.1	+	1	555	c.555C>T	c.(553-555)CTC>CTT	p.L185L		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	158	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGTTCAGCTCCTCCTGGTCC	0.527													13	30					0	0	0.001855	0	0
OR4A5	81318	broad.mit.edu	37	11	51411617	51411617	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:51411617G>A	uc001nhi.1	-	1	779	c.779C>T	c.(778-780)TCA>TTA	p.S260L		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				AGGAAAGTTTGAAACAGGTCT	0.383													11	9					0	0	0.001368	0	0
OR5F1	338674	broad.mit.edu	37	11	55762055	55762055	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:55762055C>T	uc010riv.1	-	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					GTCTGCTAATCCCAATAGGAC	0.348													20	16					0	0	0.003330	0	0
OR5T3	390154	broad.mit.edu	37	11	56020000	56020000	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:56020000C>T	uc010rjd.1	+	1	325	c.325C>T	c.(325-327)CCA>TCA	p.P109S		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	109	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					AGTTGTCACTCCAAAAATGTT	0.368													36	16					0	0	0.004289	0	0
OR5T3	390154	broad.mit.edu	37	11	56020208	56020208	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:56020208C>T	uc010rjd.1	+	1	533	c.533C>T	c.(532-534)TCC>TTC	p.S178F		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	178	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					ATCACTGCTTCCTACGTTGCT	0.433													46	23					0	0	0.003610	0	0
OR8K1	390157	broad.mit.edu	37	11	56114057	56114057	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:56114057C>T	uc010rjg.1	+	1	543	c.543C>T	c.(541-543)AGC>AGT	p.S181S		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					ACATAATCAGCTATTTTTACT	0.358										HNSCC(65;0.19)			31	21					0	0	0.002445	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958210	57958210	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:57958210C>T	uc010rka.1	+	1	248	c.248C>T	c.(247-249)GCT>GTT	p.A83V		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				CAGATGCTGGCTGTGCTGTGG	0.587													38	24					0	0	0.004289	0	0
OR5B3	441608	broad.mit.edu	37	11	58170161	58170161	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:58170161G>A	uc010rkf.1	-	1	722	c.722C>T	c.(721-723)TCT>TTT	p.S241F		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AATGAAATGAGAGGCACAGGT	0.443													11	12					0	0	0.000978	0	0
OR4D6	219983	broad.mit.edu	37	11	59224811	59224811	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:59224811C>T	uc010rku.1	+	1	378	c.378C>T	c.(376-378)ATC>ATT	p.I126I		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACCTTGCAATCGCCAAGCCCC	0.498													66	33					0	0	0.003610	0	0
GIF	2694	broad.mit.edu	37	11	59604768	59604768	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:59604768C>T	uc001noi.2	-	6	798	c.750G>A	c.(748-750)ACG>ACA	p.T250T		NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	250					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						GTATCATATCCGTAGTCTTCT	0.443													12	9					0	0	0.001855	0	0
SLC15A3	51296	broad.mit.edu	37	11	60714147	60714147	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:60714147G>A	uc001nqn.2	-	2	939	c.705C>T	c.(703-705)GGC>GGT	p.G235G	SLC15A3_uc001nqo.2_Silent_p.G235G	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	235	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GGCCCACACAGCCCACAGGGA	0.562													70	26					0	0	0.003610	0	0
AHNAK	79026	broad.mit.edu	37	11	62296060	62296060	+	Silent	SNP	C	A	A	rs601430		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:62296060C>A	uc001ntl.2	-	5	6129	c.5829G>T	c.(5827-5829)TCG>TCT	p.S1943S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1943					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ATTTTGGCACCGACACATCCA	0.512													6	155					0.00198382	0.00271841	0.001984	1	0
TUT1	64852	broad.mit.edu	37	11	62343574	62343574	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:62343574C>T	uc001nto.2	-	9	1769	c.1731G>A	c.(1729-1731)CTG>CTA	p.L577L	EEF1G_uc001ntm.1_5'Flank|EEF1G_uc010rlw.1_5'Flank|TUT1_uc001ntp.1_Silent_p.L73L	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	539	PAP-associated.				mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						CCTGGAGATTCAGGGGGCCAA	0.627													13	9					0	0	0.002450	0	0
SLC22A25	387601	broad.mit.edu	37	11	62996844	62996844	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:62996844G>A	uc001nwr.1	-	1	281	c.281C>T	c.(280-282)CCC>CTC	p.P94L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.P94L	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	94	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CTTCCACTGGGGATGGACAAA	0.542													38	17					0	0	0.004289	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057643	63057643	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:63057643C>T	uc009yor.2	+	1	214	c.6C>T	c.(4-6)GCC>GCT	p.A2A	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_Intron|SLC22A10_uc010rmp.1_5'Flank	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	2	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						AATCAATGGCCTTTGAGGAGC	0.398													13	12					0	0	0.002450	0	0
SLC22A20	440044	broad.mit.edu	37	11	64985149	64985149	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:64985149C>T	uc010roc.1	+	3	626	c.623C>T	c.(622-624)TCC>TTC	p.S208F	SLC22A20_uc010rob.1_Missense_Mutation_p.S208F	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	208	Helical; (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						ATCCTCAACTCCGTCTCCCTG	0.652													12	15					0	0	0.002450	0	0
POLA2	23649	broad.mit.edu	37	11	65062070	65062070	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:65062070C>T	uc001odj.2	+	15	1749	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F	POLA2_uc010rod.1_Silent_p.F261F|POLA2_uc001odk.2_Silent_p.F166F	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	469					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	GAGTGATCTTCGGCTTGACAT	0.493													38	32					0	0	0.002852	0	0
MUS81	80198	broad.mit.edu	37	11	65632505	65632505	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:65632505C>T	uc001ofv.3	+	13	1643	c.1290C>T	c.(1288-1290)AGC>AGT	p.S430S	MUS81_uc001ofw.3_Intron|MUS81_uc001ofx.3_5'UTR	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog	430					DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		CCCTACGCAGCCGCCCCTGGG	0.637								Homologous_recombination					35	23					0	0	0.003755	0	0
DPP3	10072	broad.mit.edu	37	11	66272217	66272217	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:66272217C>T	uc001oig.1	+	17	2075	c.2013C>T	c.(2011-2013)CTC>CTT	p.L671L	DPP3_uc001oif.1_Silent_p.L671L|DPP3_uc010rpe.1_Silent_p.L660L|DPP3_uc001oih.1_Missense_Mutation_p.S39L	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	671					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CTCGGAAGCTCATTGTTCAGC	0.577													40	26					0	0	0.003214	0	0
PITPNM1	9600	broad.mit.edu	37	11	67262928	67262928	+	Silent	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:67262928G>T	uc001olx.2	-	15	2652	c.2463C>A	c.(2461-2463)ACC>ACA	p.T821T	PITPNM1_uc001olw.2_Silent_p.T103T|PITPNM1_uc001oly.2_Silent_p.T821T|PITPNM1_uc001olz.2_Silent_p.T820T	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	821	DDHD.				brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CCTCACTGGTGGTGCTGGGGG	0.642													7	1					1.12685e-05	1.54816e-05	0.004482	1	0
LRP5	4041	broad.mit.edu	37	11	68153787	68153787	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:68153787C>T	uc001ont.2	+	6	1094	c.1019C>T	c.(1018-1020)GCC>GTC	p.A340V	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	340	Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TCCACAGGAGCCGAGGAGGTG	0.662													17	12					0	0	0.006122	0	0
SAPS3	55291	broad.mit.edu	37	11	68367904	68367904	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:68367904C>T	uc001onw.2	+	20	2401	c.2134C>T	c.(2134-2136)CCG>TCG	p.P712S	SAPS3_uc001onv.2_Missense_Mutation_p.P712S|SAPS3_uc001ony.3_Missense_Mutation_p.P683S|SAPS3_uc001onx.2_Missense_Mutation_p.P706S|SAPS3_uc009ysh.2_Missense_Mutation_p.P632S|SAPS3_uc001onu.2_Missense_Mutation_p.P632S|SAPS3_uc010rqc.1_Missense_Mutation_p.P480S|SAPS3_uc010rqd.1_Missense_Mutation_p.P395S|SAPS3_uc001onz.2_Missense_Mutation_p.P40S|SAPS3_uc001ooa.2_Missense_Mutation_p.P162S	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	712					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			CACAGAGGAGCCGATGCCAAC	0.527													19	14					0	0	0.006122	0	0
ANO1	55107	broad.mit.edu	37	11	69972296	69972296	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:69972296C>T	uc001opj.2	+	10	1397	c.1092C>T	c.(1090-1092)ATC>ATT	p.I364I	ANO1_uc001opk.1_Silent_p.I336I|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.I99I	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	364	Extracellular (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						ATGAAAACATCCCCAGGTAGG	0.602													10	8					0	0	0.006214	0	0
C2CD3	26005	broad.mit.edu	37	11	73879454	73879454	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:73879454G>A	uc001ouu.2	-	2	487	c.260C>T	c.(259-261)GCT>GTT	p.A87V	PPME1_uc001ouw.2_5'Flank|C2CD3_uc001ouv.2_Missense_Mutation_p.A87V	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	87						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TGTTCTCACAGCTTTTGGTTC	0.448													28	10					0	0	0.002445	0	0
C2CD3	26005	broad.mit.edu	37	11	73879531	73879531	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:73879531G>A	uc001ouu.2	-	2	410	c.183C>T	c.(181-183)GTC>GTT	p.V61V	PPME1_uc001ouw.2_5'Flank|C2CD3_uc001ouv.2_Silent_p.V61V	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	61						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					ATCTCACTCGGACAAGTACAC	0.473													29	19					0	0	0.006320	0	0
DLG2	1740	broad.mit.edu	37	11	84245709	84245709	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:84245709T>C	uc001paj.2	-	2	411	c.108A>G	c.(106-108)GTA>GTG	p.V36V	DLG2_uc010rsz.1_Silent_p.V36V|DLG2_uc010rta.1_Silent_p.V36V|DLG2_uc001pak.2_Silent_p.V141V|DLG2_uc001pal.1_Silent_p.V36V	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	36						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CTGGGCCTCTTACTTCGTGGG	0.408													42	22					0	0	0.006999	0	0
CCDC81	60494	broad.mit.edu	37	11	86119298	86119298	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:86119298C>T	uc001pbx.1	+	9	1527	c.1099C>T	c.(1099-1101)CTC>TTC	p.L367F	CCDC81_uc001pbw.1_Missense_Mutation_p.L277F|CCDC81_uc010rtq.1_Missense_Mutation_p.L150F|CCDC81_uc001pby.1_Intron	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	367										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				TCAGGAGGCTCTCTTCAGACA	0.353													14	5					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	11	89774369	89774369	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:89774369C>G	uc010rua.1	+	7	1133	c.1010C>G	c.(1009-1011)ACC>AGC	p.T337S		NM_020358	NP_065091			ring finger protein 18																		CAGACTTTCACCTCGGGCAAA	0.433													17	14					0	0	0.008871	0	0
FAT3	120114	broad.mit.edu	37	11	92085391	92085391	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:92085391C>T	uc001pdj.3	+	1	130	c.113C>T	c.(112-114)CCC>CTC	p.P38L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	38	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGGACTGGACCCCTGGGCTTC	0.547										TCGA Ovarian(4;0.039)			201	157					0	0	0.003610	0	0
MTNR1B	4544	broad.mit.edu	37	11	92714776	92714776	+	Silent	SNP	C	T	T	rs147960983		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:92714776C>T	uc001pdk.1	+	2	490	c.387C>T	c.(385-387)TTC>TTT	p.F129F		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	129	Helical; Name=3; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	GCTCTGTCTTCAATATCACTG	0.592													105	63					0	0	0.003610	0	0
MTNR1B	4544	broad.mit.edu	37	11	92714955	92714955	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:92714955C>T	uc001pdk.1	+	2	669	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	189	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CGCATCTATTCCTGCACCTTC	0.607													118	68					0	0	0.003610	0	0
FOLR4	390243	broad.mit.edu	37	11	94039753	94039753	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:94039753C>T	uc010rud.1	+	2	213	c.213C>T	c.(211-213)CTC>CTT	p.L71L		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	71						extracellular region	folic acid binding|receptor activity			ovary(1)	1						TATCCCCACTCTACAACTTCA	0.547													64	41					0	0	0.003610	0	0
MMP3	4314	broad.mit.edu	37	11	102709901	102709901	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:102709901G>A	uc001phj.1	-	7	1074	c.1009C>T	c.(1009-1011)CCT>TCT	p.P337S		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	337	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	ACGCCTGAAGGAAGAGATGGC	0.363													32	23					0	0	0.005524	0	0
DYNC2H1	79659	broad.mit.edu	37	11	102991455	102991455	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:102991455T>A	uc001pho.2	+	8	1316	c.1172T>A	c.(1171-1173)ATT>AAT	p.I391N	DYNC2H1_uc001phn.1_Missense_Mutation_p.I391N|DYNC2H1_uc009yxe.1_Missense_Mutation_p.I391N	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	391	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TATGAAAAGATTATTGCACCT	0.289													13	3					0	0	0.002450	0	0
CWF19L2	143884	broad.mit.edu	37	11	107299846	107299846	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:107299846G>A	uc010rvp.1	-	8	1142	c.1112C>T	c.(1111-1113)CCC>CTC	p.P371L	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	371							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		ATCATCAGAGGGTCTCAAGAA	0.408													27	16					0	0	0.006320	0	0
LAYN	143903	broad.mit.edu	37	11	111430975	111430975	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:111430975C>T	uc001plr.1	+	8	1277	c.941C>T	c.(940-942)TCA>TTA	p.S314L	LAYN_uc001plp.1_Missense_Mutation_p.S306L|LAYN_uc001plq.1_3'UTR|LAYN_uc001pls.1_3'UTR|LAYN_uc010rwg.1_Missense_Mutation_p.S161L|LAYN_uc010rwh.1_Missense_Mutation_p.S162L	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	314	Cytoplasmic (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		AAGAATATTTCATTCCGAGTG	0.498													25	12					0	0	0.005443	0	0
AMICA1	120425	broad.mit.edu	37	11	118083243	118083243	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:118083243G>A	uc001psk.2	-	3	251	c.77C>T	c.(76-78)TCC>TTC	p.S26F	AMICA1_uc001psh.2_5'UTR|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.S16F|AMICA1_uc001psj.2_Missense_Mutation_p.S26F|AMICA1_uc010rxw.1_5'UTR|AMICA1_uc010rxx.1_Missense_Mutation_p.S26F|AMICA1_uc001psl.1_Intron	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	26	Ig-like V-type 1.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CTCAGGCGGGGAAACATTCAA	0.413													24	8					0	0	0.004656	0	0
BCL9L	283149	broad.mit.edu	37	11	118770160	118770160	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:118770160G>A	uc001pug.2	-	8	4429	c.3464C>T	c.(3463-3465)CCT>CTT	p.P1155L	BCL9L_uc009zal.2_Missense_Mutation_p.P1150L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1155	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CATGCCCATAGGGCTCTGGGC	0.652													8	3					0	0	0.000978	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120298859	120298859	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:120298859C>T	uc001pxl.1	+	8	495	c.488C>T	c.(487-489)CCG>CTG	p.P163L	ARHGEF12_uc009zat.2_Missense_Mutation_p.P144L|ARHGEF12_uc010rzn.1_Missense_Mutation_p.P60L|ARHGEF12_uc009zau.1_Missense_Mutation_p.P60L	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	163					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		GAAGTAGAGCCGTCAGTCATT	0.542			T	MLL	AML								64	35					0	0	0.003610	0	0
TECTA	7007	broad.mit.edu	37	11	120980156	120980156	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:120980156C>T	uc010rzo.1	+	3	435	c.435C>T	c.(433-435)TTC>TTT	p.F145F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	145	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CTTGGGTTTTCATTGTGACAT	0.438													33	25					0	0	0.003755	0	0
SORL1	6653	broad.mit.edu	37	11	121428058	121428058	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:121428058C>T	uc001pxx.2	+	19	2687	c.2607C>T	c.(2605-2607)ATC>ATT	p.I869I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	869	Extracellular (Potential).|LDL-receptor class B 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GACTCACAATCGTCAATTCCT	0.522													39	21					0	0	0.003610	0	0
SORL1	6653	broad.mit.edu	37	11	121498459	121498459	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:121498459C>T	uc001pxx.2	+	47	6640	c.6560C>T	c.(6559-6561)TCC>TTC	p.S2187F	SORL1_uc010rzp.1_Missense_Mutation_p.S1033F|SORL1_uc010rzq.1_Missense_Mutation_p.S802F	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2187	Cytoplasmic (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCAATCTTCTCCTCTGGGGAT	0.602													16	7					0	0	0.006122	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123471203	123471203	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:123471203G>A	uc001pyx.2	+	7	897	c.568G>A	c.(568-570)GAT>AAT	p.D190N	GRAMD1B_uc001pyw.2_Missense_Mutation_p.D197N|GRAMD1B_uc010rzw.1_Missense_Mutation_p.D150N|GRAMD1B_uc010rzx.1_Missense_Mutation_p.D150N|GRAMD1B_uc009zbe.1_Missense_Mutation_p.D186N	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	190						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		TGGGGCCCGGGATAGGACATA	0.423													9	7					0	0	0.006214	0	0
OR8D4	338662	broad.mit.edu	37	11	123777788	123777788	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:123777788C>T	uc010saa.1	+	1	650	c.650C>T	c.(649-651)TCA>TTA	p.S217L		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		ATCATTATTTCATATGCTTTT	0.428													38	26					0	0	0.006230	0	0
OR4D5	219875	broad.mit.edu	37	11	123810703	123810703	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:123810703C>T	uc001pzk.1	+	1	380	c.380C>T	c.(379-381)TCC>TTC	p.S127F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		ATTGCCATTTCCCAGCCCCTG	0.507													37	25					0	0	0.006999	0	0
OR4D5	219875	broad.mit.edu	37	11	123811173	123811173	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:123811173C>T	uc001pzk.1	+	1	850	c.850C>T	c.(850-852)CCT>TCT	p.P284S		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CATGCTGAATCCTGCCATCTA	0.502													46	21					0	0	0.003610	0	0
OR10G7	390265	broad.mit.edu	37	11	123909399	123909399	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:123909399G>A	uc001pzq.1	-	1	310	c.310C>T	c.(310-312)CAC>TAC	p.H104Y		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCCAGGAAGTGGAAAAAATAG	0.537													19	76					0	0	0.002299	0	0
OR8B4	283162	broad.mit.edu	37	11	124293853	124293853	+	Silent	SNP	C	T	T	rs151274125		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:124293853C>T	uc010sak.1	-	1	915	c.915G>A	c.(913-915)AAG>AAA	p.K305K		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AGAGCACTCTCTTCAGGGTTT	0.423													9	14					0	0	0.000978	0	0
OR8B4	283162	broad.mit.edu	37	11	124294693	124294693	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:124294693G>A	uc010sak.1	-	1	75	c.75C>T	c.(73-75)CTC>CTT	p.L25L		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GGAAAAGAGGGAGCTGGAGCT	0.483													22	12					0	0	0.002299	0	0
ST14	6768	broad.mit.edu	37	11	130068280	130068280	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:130068280G>A	uc001qfw.2	+	13	1730	c.1537G>A	c.(1537-1539)GAC>AAC	p.D513N		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	513	Extracellular (Potential).|LDL-receptor class A 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	CAGTGTGAACGACTGCGGAGA	0.662													34	8					0	0	0.005524	0	0
ST14	6768	broad.mit.edu	37	11	130069969	130069969	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:130069969C>T	uc001qfw.2	+	16	2124	c.1931C>T	c.(1930-1932)TCC>TTC	p.S644F		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	644	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity	p.S644S(1)		ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	TGCGGTGCTTCCCTCATCTCT	0.627													17	8					0	0	0.008871	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130278365	130278365	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:130278365G>A	uc001qgg.3	-	8	2451	c.2093C>T	c.(2092-2094)CCC>CTC	p.P698L	ADAMTS8_uc001qgf.2_Missense_Mutation_p.P179L	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	698	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		TCACTTGGTGGGGGTGAGGGA	0.433													35	20					0	0	0.006230	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130284431	130284431	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr11:130284431G>A	uc001qgg.3	-	5	1919	c.1561C>T	c.(1561-1563)CCC>TCC	p.P521S	ADAMTS8_uc001qgf.2_5'Flank	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	521	Disintegrin.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CTCACCTTGGGCCTCTCCACT	0.612													29	17					0	0	0.007291	0	0
SLC6A13	6540	broad.mit.edu	37	12	344277	344277	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:344277G>A	uc001qic.1	-	7	863	c.810C>T	c.(808-810)CTC>CTT	p.L270L	SLC6A13_uc009zdj.1_Silent_p.L270L|SLC6A13_uc010sdl.1_Silent_p.L178L|SLC6A13_uc010sdm.1_Silent_p.L151L	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	270					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ACAGACGCGTGAGGTTTGGGT	0.572													28	18					0	0	0.008361	0	0
CACNA1C	775	broad.mit.edu	37	12	2676850	2676850	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:2676850C>T	uc009zdu.1	+	13	2098	c.1785C>T	c.(1783-1785)GTC>GTT	p.V595V	CACNA1C_uc009zdv.1_Silent_p.V592V|CACNA1C_uc001qkb.2_Silent_p.V595V|CACNA1C_uc001qkc.2_Silent_p.V595V|CACNA1C_uc001qke.2_Silent_p.V595V|CACNA1C_uc001qkf.2_Silent_p.V595V|CACNA1C_uc001qjz.2_Silent_p.V595V|CACNA1C_uc001qkd.2_Silent_p.V595V|CACNA1C_uc001qkg.2_Silent_p.V595V|CACNA1C_uc009zdw.1_Silent_p.V595V|CACNA1C_uc001qkh.2_Silent_p.V595V|CACNA1C_uc001qkl.2_Silent_p.V595V|CACNA1C_uc001qkn.2_Silent_p.V595V|CACNA1C_uc001qko.2_Silent_p.V595V|CACNA1C_uc001qkp.2_Silent_p.V595V|CACNA1C_uc001qkr.2_Silent_p.V595V|CACNA1C_uc001qku.2_Silent_p.V595V|CACNA1C_uc001qkq.2_Silent_p.V595V|CACNA1C_uc001qks.2_Silent_p.V595V|CACNA1C_uc001qkt.2_Silent_p.V595V|CACNA1C_uc001qka.1_Silent_p.V130V|CACNA1C_uc001qki.1_Silent_p.V331V|CACNA1C_uc001qkj.1_Silent_p.V331V|CACNA1C_uc001qkk.1_Silent_p.V331V|CACNA1C_uc001qkm.1_Silent_p.V331V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	595	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACTGCTTCGTCGTGTGTGGCG	0.592													8	6					0	0	0.003080	0	0
VWF	7450	broad.mit.edu	37	12	6061606	6061606	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:6061606C>T	uc001qnn.1	-	49	8316	c.8066G>A	c.(8065-8067)AGG>AAG	p.R2689K	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2689					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCCTGTGACCCTCTTCTCCCA	0.502													17	12					0	0	0.004990	0	0
GPR162	27239	broad.mit.edu	37	12	6936244	6936244	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:6936244G>T	uc001qqw.1	+	5	2177	c.1642G>T	c.(1642-1644)GTT>TTT	p.V548F	LEPREL2_uc001qqz.1_5'Flank|LEPREL2_uc001qra.1_5'Flank|LEPREL2_uc001qrb.1_5'Flank|GPR162_uc001qqx.1_Missense_Mutation_p.V264F|GPR162_uc009zfd.1_Missense_Mutation_p.V244F|GPR162_uc001qqy.1_Intron	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	548	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity	p.V548A(1)		ovary(1)|central_nervous_system(1)|pancreas(1)	3						GAGCAGAGCCGTTGGACTTCC	0.672													47	27					1.47857e-17	2.04425e-17	0.003610	1	0
PEX5	5830	broad.mit.edu	37	12	7362423	7362423	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:7362423C>T	uc009zfu.1	+	16	2285	c.1705C>T	c.(1705-1707)CTC>TTC	p.L569F	PEX5_uc001qsw.2_Missense_Mutation_p.L569F|PEX5_uc010sgc.1_Missense_Mutation_p.L584F|PEX5_uc001qsu.2_Missense_Mutation_p.L532F|PEX5_uc010sgd.1_Missense_Mutation_p.L590F|PEX5_uc001qsv.2_Missense_Mutation_p.L561F	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	569	TPR 7.				protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						CTGCATCAACCTCGGGGCTCA	0.522													22	14					0	0	0.003330	0	0
CD163L1	283316	broad.mit.edu	37	12	7551065	7551065	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:7551065C>T	uc001qsy.2	-	7	1550	c.1524G>A	c.(1522-1524)AGG>AGA	p.R508R	CD163L1_uc010sge.1_Silent_p.R518R	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	508	SRCR 5.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CAGCTGCATTCCTTGTGCTCC	0.468													30	24					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	12	8050937	8050937	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:8050937G>A	uc001qtp.1	+	3	400	c.320G>A	c.(319-321)GGT>GAT	p.G107D	uc001qtq.1_5'Flank					RecName: Full=Putative homeobox protein NANOG2;																		aatagcaatggtgtgacgcag	0.174													7	5					0	0	0.006214	0	0
A2M	2	broad.mit.edu	37	12	9246161	9246162	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:9246161_9246162CC>TT	uc001qvk.1	-	18	2252_2253	c.2139_2140GG>AA	c.(2137-2142)ATGGGA>ATAAGA	p.713_714MG>IR	A2M_uc009zgk.1_Missense_Mutation_p.563_564MG>IR	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	713_714	Bait region.				blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TGGCCTCTTCCCATTACATCTG	0.426													12	6					0	0	0.004672	0	0
A2M	2	broad.mit.edu	37	12	9265965	9265965	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:9265965G>A	uc001qvk.1	-	2	374	c.261C>T	c.(259-261)GTC>GTT	p.V87V	A2M_uc009zgk.1_5'UTR	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	87					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	CAGCGAAGGCGACACAGTGGA	0.488													26	14					0	0	0.005443	0	0
KIAA1467	57613	broad.mit.edu	37	12	13215833	13215833	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:13215833C>G	uc001rbi.2	+	5	799	c.776C>G	c.(775-777)GCC>GGC	p.A259G	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	259						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		ACCTTGGCTGCCCCAGTTGTG	0.468													7	75					0	0	0.004482	0	0
RERG	85004	broad.mit.edu	37	12	15262435	15262435	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:15262435C>T	uc001rcs.2	-	4	349	c.209G>A	c.(208-210)AGG>AAG	p.R70K	RERG_uc001rct.2_Missense_Mutation_p.R70K|RERG_uc010shu.1_Missense_Mutation_p.R51K	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	70					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						GTGCCCCTCCCTCTGAATGGT	0.458													123	81					0	0	0.003610	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18793432	18793432	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:18793432C>T	uc001rdt.2	+	31	4245	c.4129C>T	c.(4129-4131)CGT>TGT	p.R1377C	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.R1418C|PIK3C2G_uc010sic.1_Missense_Mutation_p.R1196C	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1377	C2.			R -> L (in Ref. 1; CAA03853).	cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CAGTGAAGTTCGTAGGAGGAA	0.368													14	1					0	0	0.002450	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19406906	19406906	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:19406906C>T	uc001reb.2	+	4	346	c.260C>T	c.(259-261)CCA>CTA	p.P87L	PLEKHA5_uc010sie.1_Missense_Mutation_p.P87L|PLEKHA5_uc001rea.2_Missense_Mutation_p.P87L|PLEKHA5_uc009zin.2_5'UTR|PLEKHA5_uc010sif.1_5'UTR|PLEKHA5_uc010sig.1_5'UTR|PLEKHA5_uc010sih.1_5'UTR	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	87	WW 2.						1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					TGCAAACATCCAGTCACAGGA	0.333													68	40					0	0	0.003610	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21054389	21054389	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:21054389C>T	uc001rek.2	+	14	1979	c.1853C>T	c.(1852-1854)TCC>TTC	p.S618F	SLCO1B3_uc001rel.2_Missense_Mutation_p.S618F|SLCO1B3_uc010sil.1_Missense_Mutation_p.S618F|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.S443F	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	618	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ATATATAATTCCGTATTTTTT	0.338													29	73					0	0	0.001786	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21242995	21242995	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:21242995C>G	uc010sil.1	+	16	2267	c.2202C>G	c.(2200-2202)TTC>TTG	p.F734L	LST-3TM12_uc010sim.1_Missense_Mutation_p.F673L|LST-3TM12_uc010sin.1_Missense_Mutation_p.F626L			Q9NPD5	SO1B3_HUMAN	SubName: Full=Liver-specific organic anion transporter 3TM13; SubName: Full=Organic anion transporter LST-3c;	673	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ACTTAGAATTCTTAAACGACA	0.308													9	23					0	0	0.004482	0	0
ITPR2	3709	broad.mit.edu	37	12	26875362	26875362	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:26875362G>A	uc001rhg.2	-	5	910	c.493C>T	c.(493-495)CCG>TCG	p.P165S	ITPR2_uc001rhh.1_Missense_Mutation_p.P103S|ITPR2_uc001rhi.1_Missense_Mutation_p.P165S	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	165	MIR 1.|Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TTCCAGAACGGATGAATATAA	0.383													20	63					0	0	0.001882	0	0
TM7SF3	51768	broad.mit.edu	37	12	27148241	27148241	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:27148241T>C	uc010sjl.1	-	5	857	c.619A>G	c.(619-621)ACT>GCT	p.T207A		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	207						integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					ATCTCCTCAGTGAGGTCATTC	0.527													40	58					0	0	0.008740	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27841288	27841288	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:27841288C>T	uc001ric.1	+	25	2823	c.2446C>T	c.(2446-2448)CTG>TTG	p.L816L	PPFIBP1_uc010sjr.1_Silent_p.L647L|PPFIBP1_uc001rib.1_Silent_p.L810L|PPFIBP1_uc001ria.2_Silent_p.L785L|PPFIBP1_uc001rid.1_Silent_p.L663L|PPFIBP1_uc001rif.1_Silent_p.L323L	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	816	SAM 3.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					GATGGAGTGGCTGCGCTCCGT	0.453													89	202					0	0	0.003610	0	0
DDX11	1663	broad.mit.edu	37	12	31236788	31236788	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:31236788C>T	uc001rjt.1	+	3	437	c.186C>T	c.(184-186)CTC>CTT	p.L62L	DDX11_uc010sjw.1_Silent_p.L62L|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Silent_p.L62L|DDX11_uc001rjs.1_Silent_p.L62L|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Silent_p.L62L|DDX11_uc001rjw.1_Silent_p.L36L	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	62	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					TCTCTTGGCTCCGTGACTTTG	0.458										Multiple Myeloma(12;0.14)			35	73					0	0	0.004289	0	0
C12orf35	55196	broad.mit.edu	37	12	32135112	32135112	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:32135112C>T	uc001rks.2	+	4	1637	c.1223C>T	c.(1222-1224)TCA>TTA	p.S408L		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	408										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			CAGAAGTTTTCAGAACTTGCA	0.318													46	111					0	0	0.003610	0	0
PKP2	5318	broad.mit.edu	37	12	33031217	33031217	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:33031217G>A	uc001rlj.3	-	3	712	c.597C>T	c.(595-597)ATC>ATT	p.I199I	PKP2_uc001rlk.3_Silent_p.I199I|PKP2_uc010skj.1_Silent_p.I199I	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	199					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGACCCCCACGATCTCGGAAC	0.597													15	41					0	0	0.004990	0	0
ABCD2	225	broad.mit.edu	37	12	39973389	39973389	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:39973389G>A	uc001rmb.2	-	8	2251	c.1825C>T	c.(1825-1827)CTG>TTG	p.L609L		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	609	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						CCTCCTGACAGGACATCTTTC	0.323													35	59					0	0	0.008740	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457746	45457746	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:45457746G>A	uc001rol.2	-	1		c.1449C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CTGTTGGCCTGGGGCAGTTCA	0.458													12	36					0	0	0.004007	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48142295	48142295	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:48142295C>T	uc009zkp.2	-	11	1499	c.1059G>A	c.(1057-1059)AAG>AAA	p.K353K	RAPGEF3_uc010sln.1_5'Flank|RAPGEF3_uc001rpy.2_5'Flank|RAPGEF3_uc009zkq.2_Silent_p.K353K|RAPGEF3_uc001rpz.3_Silent_p.K395K|RAPGEF3_uc001rqa.2_5'Flank|RAPGEF3_uc009zkr.2_RNA|RAPGEF3_uc009zks.2_Silent_p.K407K	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	353					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GCTCTAGGATCTTCTCTGGGG	0.358													14	52					0	0	0.006122	0	0
SENP1	29843	broad.mit.edu	37	12	48482619	48482619	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:48482619G>A	uc001rqx.2	-	5	791	c.345C>T	c.(343-345)AGC>AGT	p.S115S	SENP1_uc001rqw.2_Silent_p.S115S|SENP1_uc001rqy.2_5'UTR|SENP1_uc001rqz.2_5'UTR|SENP1_uc009zkx.2_Silent_p.S115S	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	115	Ser-rich.				activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				AAAGACTTCGGCTGTTTCTTG	0.428													6	11					0	0	0.001984	0	0
MLL2	8085	broad.mit.edu	37	12	49422739	49422739	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:49422739A>T	uc001rta.3	-	45	14254	c.14254T>A	c.(14254-14256)TTC>ATC	p.F4752I		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4752					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GTATCTGGGAAGACTGAATGA	0.547			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			24	149					0	0	0.007291	0	0
DIP2B	57609	broad.mit.edu	37	12	51138597	51138597	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:51138597C>T	uc001rwv.2	+	38	4862	c.4706C>T	c.(4705-4707)CCC>CTC	p.P1569L	DIP2B_uc009zlt.2_Missense_Mutation_p.P999L	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	1569						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						CAGTTAGACCCCATCTACGTG	0.527													38	31					0	0	0.002522	0	0
GALNT6	11226	broad.mit.edu	37	12	51754529	51754529	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:51754529C>T	uc001ryk.2	-	6	1368	c.1143G>A	c.(1141-1143)GGG>GGA	p.G381G	GALNT6_uc009zma.1_Intron|GALNT6_uc001ryl.1_Silent_p.G381G|GALNT6_uc001ryj.1_5'Flank	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	381	Catalytic subdomain B.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						CCACGTTCTCCCCTCCCCAGA	0.537													45	37					0	0	0.003610	0	0
KRT7	3855	broad.mit.edu	37	12	52635367	52635367	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:52635367G>A	uc001saa.1	+	5	932	c.805G>A	c.(805-807)GAG>AAG	p.E269K	KRT7_uc009zmf.1_Missense_Mutation_p.E269K	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	269	Rod.|Coil 2.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		GGCGCAGTATGAGGAGATGGC	0.607													15	10					0	0	0.003163	0	0
KRT7	3855	broad.mit.edu	37	12	52639340	52639340	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:52639340G>A	uc001saa.1	+	7	1256	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	KRT7_uc009zmf.1_Intron	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	377	Rod.|Coil 2.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		TGAGTACCAGGAACTCATGAG	0.637													19	23					0	0	0.001523	0	0
KRT83	3889	broad.mit.edu	37	12	52714792	52714792	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:52714792C>T	uc001saf.2	-	1	391	c.328G>A	c.(328-330)GAG>AAG	p.E110K		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	110	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCCTTCTCCTCCTGCTTCACG	0.602													51	70					0	0	0.003610	0	0
KRT72	140807	broad.mit.edu	37	12	52981534	52981534	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:52981534G>C	uc001sar.2	-	7	1277	c.1191C>G	c.(1189-1191)CAC>CAG	p.H397Q	KRT72_uc001saq.2_Missense_Mutation_p.H397Q|KRT72_uc010sns.1_Missense_Mutation_p.H355Q|KRT72_uc010snt.1_Missense_Mutation_p.H209Q	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	397	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		CCTTGGCCTGGTGCAGGGCGC	0.662													10	42					0	0	0.000978	0	0
KRT73	319101	broad.mit.edu	37	12	53011970	53011970	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:53011970G>A	uc001sas.2	-	1	374	c.339C>T	c.(337-339)CTC>CTT	p.L113L		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	113	Head.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGGGTGCCAGGAGGCTCTTGT	0.597													23	64					0	0	0.003954	0	0
KRT4	3851	broad.mit.edu	37	12	53202523	53202523	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:53202523C>T	uc001saz.2	-	5	1439	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	316						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GCAATCTCCTCGTACTGGGCA	0.592													6	28					0	0	0.001984	0	0
KRT78	196374	broad.mit.edu	37	12	53242420	53242420	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:53242420C>T	uc001sbc.1	-	1	359	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	99	Head.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GGATCGATCTCAATCTTCAGT	0.572													9	45					0	0	0.000978	0	0
AMHR2	269	broad.mit.edu	37	12	53823728	53823728	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:53823728G>A	uc001scx.1	+	9	1332	c.1254G>A	c.(1252-1254)TGG>TGA	p.W418*	AMHR2_uc009zmy.1_Nonsense_Mutation_p.W418*	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	418	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	TGCTCCTGTGGGAGATACTGA	0.587									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				12	49					0	0	0.001368	0	0
HOXC11	3227	broad.mit.edu	37	12	54367345	54367345	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:54367345C>T	uc001sem.2	+	1	436	c.320C>T	c.(319-321)CCT>CTT	p.P107L		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	107					endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGCCTGCCTCCTTCCACCGTC	0.652			T	NUP98	AML								77	85					0	0	0.003610	0	0
SMUG1	23583	broad.mit.edu	37	12	54577461	54577461	+	Silent	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:54577461A>C	uc001sff.1	-	3	393	c.264T>G	c.(262-264)CCT>CCG	p.P88P	SMUG1_uc001sfa.1_5'Flank|SMUG1_uc001sfe.1_Silent_p.P88P|SMUG1_uc001sfg.1_Silent_p.P88P|SMUG1_uc009znf.1_Silent_p.P88P|SMUG1_uc001sfb.3_Silent_p.P88P|SMUG1_uc001sfc.3_Silent_p.P88P|SMUG1_uc001sfd.3_Silent_p.P88P	NM_014311	NP_055126	Q53HV7	SMUG1_HUMAN	single-strand-selective monofunctional	88				Missing (in Ref. 3; BAC03670).	depyrimidination	nucleolus|nucleoplasm	DNA binding|protein binding|single-strand selective uracil DNA N-glycosylase activity				0						CCATGCCAAAAGGTCCAGGGT	0.587								BER_DNA_glycosylases					12	31					0	0	0.001368	0	0
KIAA0748	9840	broad.mit.edu	37	12	55357661	55357661	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:55357661C>T	uc001sgn.3	-	8	630	c.520G>A	c.(520-522)GAT>AAT	p.D174N	KIAA0748_uc001sgl.3_Missense_Mutation_p.D36N|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_Missense_Mutation_p.D36N|KIAA0748_uc010spd.1_Missense_Mutation_p.D174N|KIAA0748_uc001sgo.3_Intron	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	174										ovary(1)|central_nervous_system(1)	2						TCTTTGTGATCCTCTTGGCCA	0.498													21	98					0	0	0.001523	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420282	55420282	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:55420282G>A	uc001sgp.3	+	2	437	c.59G>A	c.(58-60)TGG>TAG	p.W20*		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	20					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						ACACCATCCTGGATGGATAAA	0.443													9	23					0	0	0.008291	0	0
OR6C1	390321	broad.mit.edu	37	12	55714423	55714423	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:55714423G>A	uc010spi.1	+	1	40	c.40G>A	c.(40-42)GGA>AGA	p.G14R		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TATTCTTCTGGGATTAACAGA	0.393													18	22					0	0	0.001882	0	0
OR6C2	341416	broad.mit.edu	37	12	55846554	55846554	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:55846554C>T	uc001sgz.1	+	1	557	c.557C>T	c.(556-558)TCA>TTA	p.S186L		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CTAAAGATCTCATGCTCAGAT	0.413													39	45					0	0	0.006999	0	0
SILV	6490	broad.mit.edu	37	12	56350935	56350935	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:56350935G>A	uc001sip.2	-	6	1183	c.1152C>T	c.(1150-1152)GTC>GTT	p.V384V	SILV_uc001siq.2_Silent_p.V384V|SILV_uc010spx.1_Silent_p.V298V|SILV_uc001sir.2_Silent_p.V384V	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	384	10 X 13 AA approximate tandem repeats, RPT domain.|6.				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						TGGTACCCATGACCTCTGAAA	0.438													14	54					0	0	0.003163	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625278	56625278	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:56625278C>T	uc010sqj.1	+	4	477	c.220C>T	c.(220-222)CGC>TGC	p.R74C	SLC39A5_uc010sqi.1_5'UTR|SLC39A5_uc010sqk.1_Missense_Mutation_p.R74C	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	74	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCAGGGGCTTCGCCTGGGACA	0.652													23	38					0	0	0.001882	0	0
GPR182	11318	broad.mit.edu	37	12	57389900	57389900	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:57389900G>A	uc001smk.2	+	2	1001	c.907G>A	c.(907-909)GAT>AAT	p.D303N	RDH16_uc010sqx.1_Intron	NM_007264	NP_009195	O15218	GP182_HUMAN	G protein-coupled receptor 182	303	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(1)	1						CTTCTTCTATGATGTCATTGA	0.552													132	78					0	0	0.003610	0	0
LRP1	4035	broad.mit.edu	37	12	57598428	57598428	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:57598428C>T	uc001snd.2	+	72	11556	c.11090C>T	c.(11089-11091)CCC>CTC	p.P3697L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3697	Extracellular (Potential).|LDL-receptor class A 30.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GTGTGCCCTCCCAACCGGCCC	0.632													17	84					0	0	0.006122	0	0
INHBC	3626	broad.mit.edu	37	12	57843354	57843354	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:57843354G>A	uc001snv.1	+	2	735	c.608G>A	c.(607-609)GGC>GAC	p.G203D		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	203					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GTACTTGAAGGCCAGGTAGCC	0.622													23	22					0	0	0.001882	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57870159	57870159	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:57870159G>A	uc001sod.2	-	11	1510	c.1317C>T	c.(1315-1317)CCC>CCT	p.P439P	ARHGAP9_uc001sny.2_5'Flank|ARHGAP9_uc001snz.2_Silent_p.P184P|ARHGAP9_uc001soa.2_Silent_p.P38P|ARHGAP9_uc001sob.2_Silent_p.P368P|ARHGAP9_uc001soc.2_Silent_p.P368P|ARHGAP9_uc001soe.1_Silent_p.P447P	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	368	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			AGCCTGAGGAGGGCGCTGTCG	0.687													8	19					0	0	0.001368	0	0
MARCH9	92979	broad.mit.edu	37	12	58152599	58152599	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:58152599C>T	uc001spx.1	+	4	1372	c.960C>T	c.(958-960)CTC>CTT	p.L320L	MARCH9_uc001spy.2_Silent_p.L207L	NM_138396	NP_612405	Q86YJ5	MARH9_HUMAN	membrane-associated RING-CH protein IX	320						Golgi membrane|Golgi stack|integral to membrane|lysosomal membrane|trans-Golgi network	ligase activity|zinc ion binding				0	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			TCTTGCACCTCCTTGGGCAGC	0.652													4	22					0	0	0.000602	0	0
SLC16A7	9194	broad.mit.edu	37	12	60169011	60169011	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:60169011G>A	uc001sqs.2	+	5	1234	c.935G>A	c.(934-936)CGA>CAA	p.R312Q	SLC16A7_uc001sqt.2_Missense_Mutation_p.R312Q|SLC16A7_uc001squ.2_Missense_Mutation_p.R312Q|SLC16A7_uc009zqi.2_Missense_Mutation_p.R213Q|SLC16A7_uc010ssi.1_Missense_Mutation_p.R213Q	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	312	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	ATTCGACCTCGAATTCAGTAC	0.423													13	95					0	0	0.001855	0	0
FAM19A2	338811	broad.mit.edu	37	12	62261132	62261132	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:62261132C>T	uc001sqw.2	-	2	1588	c.75G>A	c.(73-75)GGG>GGA	p.G25G	FAM19A2_uc001sqx.2_Silent_p.G25G|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	25						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		ATACAACTTTCCCCCACAAGG	0.303													29	46					0	0	0.003755	0	0
IL22	50616	broad.mit.edu	37	12	68645343	68645343	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:68645343C>T	uc001sty.1	-	4	465	c.412G>A	c.(412-414)GAC>AAC	p.D138N	IL22_uc010stb.1_Missense_Mutation_p.D138N	NM_020525	NP_065386	Q9GZX6	IL22_HUMAN	interleukin 22 precursor	138					acute-phase response	extracellular space	cytokine activity|interleukin-22 receptor binding				0		Myeloproliferative disorder(1001;0.0255)	Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;5.06e-05)|BRCA - Breast invasive adenocarcinoma(357;0.00104)		ATATGCAGGTCATCACCTTCA	0.388													27	33					0	0	0.002096	0	0
LRRC10	376132	broad.mit.edu	37	12	70004303	70004303	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:70004303C>T	uc001svc.2	-	1	640	c.316G>A	c.(316-318)GGC>AGC	p.G106S		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	106	LRR 3.					nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TTGTTGTTGCCCAGGTAGAGG	0.572													5	31					0	0	0.000602	0	0
SYT1	6857	broad.mit.edu	37	12	79689860	79689860	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:79689860G>A	uc001sys.2	+	8	1157	c.486G>A	c.(484-486)GGG>GGA	p.G162G	SYT1_uc001syt.2_Silent_p.G162G|SYT1_uc001syu.2_Silent_p.G159G|SYT1_uc001syv.2_Silent_p.G162G	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	162	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						TGCTGGTAGGGATCATTCAGG	0.423													11	34					0	0	0.001855	0	0
SYT1	6857	broad.mit.edu	37	12	79837866	79837866	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:79837866G>A	uc001sys.2	+	11	1613	c.942G>A	c.(940-942)AAG>AAA	p.K314K	SYT1_uc001syt.2_Silent_p.K314K|SYT1_uc001syu.2_Silent_p.K311K|SYT1_uc001syv.2_Silent_p.K314K	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	314	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 2.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						CTTATGTGAAGATTCATCTGA	0.333													8	21					0	0	0.006214	0	0
MYF6	4618	broad.mit.edu	37	12	81101673	81101673	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:81101673G>A	uc001szf.1	+	1	228	c.175G>A	c.(175-177)GAG>AAG	p.E59K		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	59					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CAGCAGCGGAGAGGAACATGT	0.627													11	41					0	0	0.008291	0	0
MYF5	4617	broad.mit.edu	37	12	81112674	81112674	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:81112674G>A	uc001szg.2	+	3	747	c.612G>A	c.(610-612)TTG>TTA	p.L204L		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	204					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						TATCCAGCTTGGATTGCTTAT	0.438													58	43					0	0	0.003610	0	0
TMTC2	160335	broad.mit.edu	37	12	83359409	83359409	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:83359409A>C	uc001szt.2	+	6	2187	c.1755A>C	c.(1753-1755)TTA>TTC	p.L585F	TMTC2_uc001szr.1_Missense_Mutation_p.L585F|TMTC2_uc001szs.1_Missense_Mutation_p.L585F|TMTC2_uc010suk.1_Missense_Mutation_p.L340F	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	585	TPR 4.					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						GGACATTCTTAAAGTGTTCGG	0.438													31	25					0	0	0.001786	0	0
TMTC2	160335	broad.mit.edu	37	12	83359457	83359457	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:83359457C>T	uc001szt.2	+	6	2235	c.1803C>T	c.(1801-1803)CAC>CAT	p.H601H	TMTC2_uc001szr.1_Silent_p.H601H|TMTC2_uc001szs.1_Silent_p.H601H|TMTC2_uc010suk.1_Silent_p.H356H	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	601						endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						CTCATGCACACAAGAGCTCTG	0.473													36	29					0	0	0.006999	0	0
C12orf50	160419	broad.mit.edu	37	12	88388520	88388520	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:88388520C>T	uc001tam.1	-	7	650	c.482G>A	c.(481-483)GGA>GAA	p.G161E	C12orf50_uc001tan.2_Missense_Mutation_p.G215E	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	161										skin(2)|ovary(1)	3						AAGACTATCTCCTAGAAATAA	0.313													7	28					0	0	0.001984	0	0
C12orf63	374467	broad.mit.edu	37	12	97078499	97078499	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:97078499C>T	uc001tet.1	+	8	1143	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	355										skin(6)|ovary(1)	7						TTCTCATCTTCGCAGAAAAGA	0.323													50	34					0	0	0.003610	0	0
APAF1	317	broad.mit.edu	37	12	99043447	99043447	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:99043447C>T	uc001tfz.2	+	4	1088	c.511C>T	c.(511-513)CAT>TAT	p.H171Y	APAF1_uc001tfy.2_Missense_Mutation_p.H160Y|APAF1_uc001tga.2_Missense_Mutation_p.H160Y|APAF1_uc001tgb.2_Missense_Mutation_p.H171Y|APAF1_uc001tgc.2_Missense_Mutation_p.H171Y	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	171	NB-ARC.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TGTTAGAGATCATTCCCTTTT	0.303													9	8					0	0	0.004482	0	0
NR1H4	9971	broad.mit.edu	37	12	100897247	100897247	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:100897247G>A	uc001tht.1	+	1	110	c.82G>A	c.(82-84)GAA>AAA	p.E28K	NR1H4_uc001thp.1_Intron|NR1H4_uc001thq.1_Intron|NR1H4_uc010svj.1_Intron|NR1H4_uc001thr.1_Intron|NR1H4_uc010svk.1_Intron|NR1H4_uc001ths.1_Missense_Mutation_p.E28K	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	28					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ATTTTTCATGGAAATGATGAG	0.458													5	19					0	0	0.000602	0	0
PAH	5053	broad.mit.edu	37	12	103234196	103234196	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:103234196A>G	uc001tjq.1	-	13	1769	c.1297T>C	c.(1297-1299)TTG>CTG	p.L433L		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	433					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	GAATCAGCCAAAATCTTAAGC	0.453													8	42					0	0	0.004482	0	0
STAB2	55576	broad.mit.edu	37	12	104048356	104048356	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:104048356C>T	uc001tjw.2	+	13	1617	c.1431C>T	c.(1429-1431)CTC>CTT	p.L477L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	477	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGCTTAAACTCCATGGAGGCA	0.294													17	15					0	0	0.004990	0	0
STAB2	55576	broad.mit.edu	37	12	104109592	104109592	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:104109592G>A	uc001tjw.2	+	43	4724	c.4538_splice	c.e43-1	p.E1513_splice	STAB2_uc009zug.2_Splice_Site	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor						angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TTGTTTTAAAGAAATCAACCC	0.512													4	34					0	0	0.000602	0	0
TDG	6996	broad.mit.edu	37	12	104376612	104376612	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:104376612C>T	uc001tkg.2	+	5	737	c.514C>T	c.(514-516)CAG>TAG	p.Q172*	TDG_uc009zuk.2_Nonsense_Mutation_p.Q168*|TDG_uc010swi.1_Nonsense_Mutation_p.Q29*|TDG_uc010swj.1_5'UTR	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	172					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		CAGTGAGGTCCAGCTGAACCA	0.358								BER_DNA_glycosylases					30	55					0	0	0.001786	0	0
SLC41A2	84102	broad.mit.edu	37	12	105282952	105282952	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:105282952G>A	uc001tla.2	-	4	906	c.739C>T	c.(739-741)CAG>TAG	p.Q247*		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	247	Helical; (Potential).					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						ACTGTTGCCTGAACCTAAAAT	0.313													24	15					0	0	0.003954	0	0
LHX5	64211	broad.mit.edu	37	12	113907000	113907000	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:113907000G>A	uc001tvj.1	-	2	898	c.324C>T	c.(322-324)ATC>ATT	p.I108I		NM_022363	NP_071758	Q9H2C1	LHX5_HUMAN	LIM homeobox protein 5	108	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TGTTCTCGTCGATGACGTAGA	0.572													11	18					0	0	0.001368	0	0
RBM19	9904	broad.mit.edu	37	12	114386824	114386824	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:114386824C>T	uc009zwi.2	-	10	1234	c.1090G>A	c.(1090-1092)GTG>ATG	p.V364M	RBM19_uc001tvn.3_Missense_Mutation_p.V364M|RBM19_uc001tvm.2_Missense_Mutation_p.V364M	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	364	RRM 2.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					TCCCTGAACACCTCGATGTAG	0.562													48	60					0	0	0.003610	0	0
CCDC60	160777	broad.mit.edu	37	12	119960745	119960745	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:119960745G>C	uc001txe.2	+	10	1507	c.1042G>C	c.(1042-1044)GAG>CAG	p.E348Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	348										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GTGTTTCAGTGAGAGATCCAG	0.498													73	95					0	0	0.003610	0	0
LRRC43	254050	broad.mit.edu	37	12	122674858	122674858	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:122674858G>A	uc009zxm.2	+	5	869	c.844G>A	c.(844-846)GAC>AAC	p.D282N	LRRC43_uc001ubw.3_Missense_Mutation_p.D97N|LRRC43_uc009zxn.2_Missense_Mutation_p.D43N	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	282	LRRCT.										0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		CGTGCTGGACGACATCACCGT	0.642													11	30					0	0	0.008291	0	0
LRRC43	254050	broad.mit.edu	37	12	122677530	122677530	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:122677530C>T	uc009zxm.2	+	7	1353	c.1328C>T	c.(1327-1329)CCC>CTC	p.P443L	LRRC43_uc001ubw.3_Missense_Mutation_p.P258L|LRRC43_uc009zxn.2_Missense_Mutation_p.P204L	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	443											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		CGTATAGATCCCCGGCTCTGC	0.592													13	7					0	0	0.002450	0	0
DNAH10	196385	broad.mit.edu	37	12	124298405	124298405	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:124298405C>T	uc001uft.3	+	20	3397	c.3372C>T	c.(3370-3372)CTC>CTT	p.L1124L	DNAH10_uc010tav.1_3'UTR|DNAH10_uc010taw.1_3'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1124	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCATGGAACTCAGATATAGGG	0.388													4	31					0	0	0.000602	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138590	126138590	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:126138590G>A	uc001uhe.1	+	9	2579	c.2571G>A	c.(2569-2571)AAG>AAA	p.K857K	TMEM132B_uc001uhf.1_Silent_p.K369K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	857	Extracellular (Potential).					integral to membrane		p.K857T(1)		skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TGGAAGGGAAGAATAAGTTAC	0.517													4	33					0	0	0.000248	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138969	126138969	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:126138969C>T	uc001uhe.1	+	9	2958	c.2950C>T	c.(2950-2952)CTT>TTT	p.L984F	TMEM132B_uc001uhf.1_Missense_Mutation_p.L496F	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	984	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GAGGAACTTCCTTCTGAATGG	0.433													5	16					0	0	0.000602	0	0
RIMBP2	23504	broad.mit.edu	37	12	130929789	130929789	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:130929789C>T	uc001uil.2	-	7	720	c.556G>A	c.(556-558)GAG>AAG	p.E186K	RIMBP2_uc001uim.2_Missense_Mutation_p.E94K|RIMBP2_uc001uin.1_5'Flank	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	186	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TCGGGGTTCTCGTTCGGTCCA	0.542													16	77					0	0	0.001523	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	A	A	rs12366766		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr12:132547087G>A	uc001ujn.2	+	46	8210	c.8175G>A	c.(8173-8175)CAG>CAA	p.Q2725Q	EP400_uc001ujl.2_Silent_p.Q2724Q|EP400_uc001ujm.2_Silent_p.Q2644Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.289													4	40					0	0	0.001168	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19622192	19622192	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:19622192G>A	uc001umb.1	-	10		c.3619C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						TTGAAGTTGGGAAACTGAGTC	0.532													30	30					0	0	0.002836	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748108	19748108	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:19748108C>T	uc009zzj.2	-	5	1297	c.1248G>A	c.(1246-1248)GGG>GGA	p.G416G		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	416					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CAGAGAACTCCCCCTCCTCCA	0.592													65	30					0	0	0.003610	0	0
CENPJ	55835	broad.mit.edu	37	13	25487158	25487158	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:25487158G>A	uc001upt.3	-	2	259	c.6C>T	c.(4-6)TTC>TTT	p.F2F	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	2					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		TTGGCATCAGGAACATCTTAG	0.403													22	12					0	0	0.003330	0	0
ATP8A2	51761	broad.mit.edu	37	13	26163833	26163833	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:26163833T>G	uc001uqk.2	+	24	2349	c.2207T>G	c.(2206-2208)TTG>TGG	p.L736W	ATP8A2_uc010tdi.1_Missense_Mutation_p.L696W|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.L246W	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	696	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GAGGACTCTTTGGATGTAAGT	0.368													34	25					0	0	0.002836	0	0
GPR12	2835	broad.mit.edu	37	13	27333865	27333865	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:27333865G>A	uc010aal.2	-	2	322	c.100C>T	c.(100-102)CCT>TCT	p.P34S	GPR12_uc010tdl.1_Intron	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	34	Extracellular (Potential).					integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		TCTACGGCAGGAACCCGGGAG	0.542													16	22					0	0	0.007413	0	0
FLT1	2321	broad.mit.edu	37	13	29012444	29012444	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:29012444G>A	uc001usb.3	-	4	712	c.427C>T	c.(427-429)CCC>TCC	p.P143S	FLT1_uc010aar.1_Missense_Mutation_p.P143S|FLT1_uc001usc.3_Missense_Mutation_p.P143S|FLT1_uc010tdp.1_Missense_Mutation_p.P143S	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	143	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ATAATTTCGGGGATTTCACTG	0.373													7	12					0	0	0.003080	0	0
MTUS2	23281	broad.mit.edu	37	13	29855896	29855896	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:29855896G>A	uc001usl.3	+	4	2788	c.2730G>A	c.(2728-2730)AAG>AAA	p.K910K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	900	Localization to the growing distal tip of microtubules.|Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TGCCTTCTAAGGACACACCCA	0.537													12	2					0	0	0.001855	0	0
RXFP2	122042	broad.mit.edu	37	13	32376410	32376410	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:32376410G>A	uc001utt.2	+	18	2204	c.2133G>A	c.(2131-2133)AGG>AGA	p.R711R	RXFP2_uc010aba.2_Silent_p.R670R	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	711	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		AACATCAGAGGAAATCAATTT	0.353													51	17					0	0	0.003610	0	0
FRY	10129	broad.mit.edu	37	13	32821520	32821520	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:32821520C>T	uc001utx.2	+	48	7385	c.6889C>T	c.(6889-6891)CTT>TTT	p.L2297F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2297					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GTCAGCCAGCCTTGTTTTACC	0.408													29	20					0	0	0.003755	0	0
SMAD9	4093	broad.mit.edu	37	13	37446898	37446898	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:37446898G>A	uc001uvw.2	-	3	910	c.567C>T	c.(565-567)CTC>CTT	p.L189L	SMAD9_uc001uvx.2_Silent_p.L189L|SMAD9_uc010tep.1_Silent_p.L19L	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	189					BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GTGAGGGAGGGAGTGCAGAGC	0.622													20	14					0	0	0.001882	0	0
NEK5	341676	broad.mit.edu	37	13	52660499	52660499	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:52660499C>T	uc001vge.2	-	16	1533	c.1393G>A	c.(1393-1395)GAA>AAA	p.E465K		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	465							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		TTCCAATATTCCTGGAAAGCA	0.338													27	17					0	0	0.001786	0	0
KLF12	11278	broad.mit.edu	37	13	74420329	74420329	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:74420329G>A	uc001vjf.2	-	4	527	c.305C>T	c.(304-306)TCC>TTC	p.S102F	KLF12_uc010aeq.2_Missense_Mutation_p.S102F|KLF12_uc001vjg.3_Missense_Mutation_p.S102F	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12	102					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		TGCTGTCATGGAAACTGGGGA	0.468													22	13					0	0	0.002299	0	0
MYCBP2	23077	broad.mit.edu	37	13	77651353	77651353	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:77651353G>A	uc001vkf.2	-	68	11631	c.11540C>T	c.(11539-11541)TCA>TTA	p.S3847L	MYCBP2_uc010aev.2_Missense_Mutation_p.S3251L|MYCBP2_uc001vke.2_Missense_Mutation_p.S467L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3847	DOC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CACACTGGCTGAAATCTGGCC	0.443													21	9					0	0	0.008871	0	0
GPC6	10082	broad.mit.edu	37	13	94680006	94680006	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:94680006C>T	uc001vlt.2	+	4	1367	c.735C>T	c.(733-735)ATC>ATT	p.I245I	GPC6_uc010tig.1_Silent_p.I245I	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	245						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				CAGGGTGTATCCGTGCCCTCA	0.468													43	27					0	0	0.003610	0	0
FARP1	10160	broad.mit.edu	37	13	99038001	99038001	+	Missense_Mutation	SNP	C	T	T	rs150061718	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:99038001C>T	uc001vnj.2	+	8	1028	c.692C>T	c.(691-693)CCG>CTG	p.P231L	FARP1_uc001vnh.2_Missense_Mutation_p.P231L	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	231	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CGGTTGCACCCGGCCAAGGAC	0.502													36	18					0	0	0.006230	0	0
UBAC2	337867	broad.mit.edu	37	13	100020071	100020071	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:100020071C>T	uc001voa.3	+	8	1322	c.838C>T	c.(838-840)CCT>TCT	p.P280S	UBAC2_uc010tiu.1_Missense_Mutation_p.P302S|UBAC2_uc001vob.3_Missense_Mutation_p.P253S|UBAC2_uc010tiv.1_RNA|UBAC2_uc001vod.2_Missense_Mutation_p.P167S|UBAC2_uc001voc.2_Missense_Mutation_p.P245S|UBAC2_uc010tiw.1_RNA|UBAC2_uc001voh.2_Missense_Mutation_p.P84S	NM_001144072	NP_001137544	Q8NBM4	UBAC2_HUMAN	UBA domain containing 2 isoform 1	280	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TCGTCTTTTTCCTCCTTTACG	0.448													27	14					0	0	0.005443	0	0
C13orf27	93081	broad.mit.edu	37	13	103418798	103418798	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:103418798A>T	uc001vpo.2	-	6	815	c.637T>A	c.(637-639)TTG>ATG	p.L213M	C13orf27_uc001vpn.2_Missense_Mutation_p.L172M|C13orf27_uc001vpp.2_Missense_Mutation_p.L172M	NM_138779	NP_620134	Q5JUR7	CM027_HUMAN	hypothetical protein LOC93081	213											0	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ATCCAAAACAAAATCTGTGTA	0.343													10	7					0	0	0.006214	0	0
FAM155A	728215	broad.mit.edu	37	13	108518740	108518740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:108518740C>T	uc001vql.2	-	1	721	c.205G>A	c.(205-207)GAC>AAC	p.D69N		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	69						integral to membrane	binding			skin(1)	1						tgctCCTTGTCCCGGGCCCGG	0.318													37	14					0	0	0.004289	0	0
MYO16	23026	broad.mit.edu	37	13	109475607	109475607	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:109475607C>T	uc001vqt.1	+	9	1138	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S	MYO16_uc010agk.1_Missense_Mutation_p.P360S|MYO16_uc001vqu.1_Missense_Mutation_p.P138S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	338					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity	p.P338T(1)		ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCACGATCTTCCCGTACTGTC	0.433													21	17					0	0	0.002299	0	0
C13orf28	122258	broad.mit.edu	37	13	113030722	113030722	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:113030722G>A	uc001vsd.1	+	1	54	c.23G>A	c.(22-24)GGG>GAG	p.G8E		NM_145248	NP_660291	Q96KW9	SPAC7_HUMAN	hypothetical protein LOC122258 precursor	8						extracellular region					0	all_lung(23;0.000633)|Lung NSC(43;0.0161)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0997)|Medulloblastoma(90;0.163)					CAAGGAGACGGGACCCTCTGC	0.577													5	5					0	0	0.000602	0	0
MCF2L	23263	broad.mit.edu	37	13	113679037	113679037	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:113679037C>T	uc001vsu.2	+	3	436	c.414C>T	c.(412-414)TTC>TTT	p.F138F	MCF2L_uc001vsq.2_Silent_p.F138F|MCF2L_uc010tjr.1_Silent_p.F81F|MCF2L_uc001vsr.2_Silent_p.F85F|MCF2L_uc001vss.3_Silent_p.F79F|MCF2L_uc010tjs.1_Silent_p.F79F	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	111	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				ACAAGGAGTTCCAGAATGTCA	0.607													24	20					0	0	0.003954	0	0
TMCO3	55002	broad.mit.edu	37	13	114193764	114193764	+	Silent	SNP	C	T	T	rs145263082	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:114193764C>T	uc001vtu.3	+	10	1993	c.1632C>T	c.(1630-1632)ATC>ATT	p.I544I		NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	544						integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			CCGAGGAGATCGCCACCTCCA	0.557													13	14					0	0	0.001855	0	0
FAM70B	348013	broad.mit.edu	37	13	114507929	114507929	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:114507929C>T	uc001vuh.2	+	8	768	c.741C>T	c.(739-741)ATC>ATT	p.I247I		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	247						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			CCCAGCAGATCCTGGCCTACG	0.677													35	16					0	0	0.003755	0	0
RASA3	22821	broad.mit.edu	37	13	114748764	114748764	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr13:114748764G>A	uc001vui.2	-	24	2630	c.2499C>T	c.(2497-2499)TCC>TCT	p.S833S	RASA3_uc010tkk.1_Silent_p.S801S|RASA3_uc001vuj.2_Silent_p.S450S	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	833					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			GACTTTAAATGGAATGAGTGG	0.602													22	15					0	0	0.003330	0	0
POTEG	404785	broad.mit.edu	37	14	19573100	19573100	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:19573100G>T	uc001vuz.1	+	8	1250	c.1198G>T	c.(1198-1200)GAA>TAA	p.E400*	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	400										ovary(1)	1						GCATCTGCAGGAAATGTCTCA	0.284													9	64					1.05317e-09	1.44998e-09	0.002450	1	0
POTEG	404785	broad.mit.edu	37	14	19573136	19573136	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:19573136G>A	uc001vuz.1	+	8	1286	c.1234G>A	c.(1234-1236)GAT>AAT	p.D412N	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	412										ovary(1)	1						TAAGGGTGGTGATAGAAAGGT	0.323													5	74					0	0	0.000978	0	0
OR10G2	26534	broad.mit.edu	37	14	22102334	22102334	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:22102334G>A	uc010tmc.1	-	1	665	c.665C>T	c.(664-666)TCC>TTC	p.S222F		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	222	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		GTTGGCATAGGAGAGCAGAAT	0.547													22	3					0	0	0.001523	0	0
Unknown	0	broad.mit.edu	37	14	22192442	22192442	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:22192442G>A	uc001wbn.2	+	2		c.345G>A								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		CATCACAGGGGATAACCTGGT	0.463													36	23					0	0	0.006230	0	0
PABPN1	8106	broad.mit.edu	37	14	23793409	23793410	+	Missense_Mutation	DNP	CC	TT	TT	rs143507010		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:23793409_23793410CC>TT	uc001wjk.2	+	6	2074_2075	c.792_793CC>TT	c.(790-795)GCCCGC>GCTTGC	p.R265C	PABPN1_uc001wjh.3_Missense_Mutation_p.R292C|PABPN1_uc001wjj.2_Missense_Mutation_p.R265C	NM_004643	NP_004634	Q86U42	PABP2_HUMAN	poly(A) binding protein, nuclear 1	265	Necessary for homooligomerization.				modification by virus of host mRNA processing|mRNA 3'-end processing|muscle contraction|nuclear mRNA splicing, via spliceosome|poly(A)+ mRNA export from nucleus|termination of RNA polymerase II transcription|viral infectious cycle	cytoplasm|nucleoplasm|ribonucleoprotein complex	nucleotide binding|protein binding|RNA binding			ovary(2)	2	all_cancers(95;6.69e-06)			GBM - Glioblastoma multiforme(265;0.00643)		TTCCACGAGCCCGCTACCGCGC	0.545													17	9					0	0	0.004672	0	0
MYH6	4624	broad.mit.edu	37	14	23868226	23868226	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:23868226G>A	uc001wjv.2	-	15	1669	c.1602C>T	c.(1600-1602)ATC>ATT	p.I534I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	534	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCTCCTCCAGGATGGACATGA	0.552													23	13					0	0	0.003330	0	0
IPO4	79711	broad.mit.edu	37	14	24653884	24653884	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:24653884G>A	uc001wmv.1	-	16	1739	c.1608C>T	c.(1606-1608)GAC>GAT	p.D536D	IPO4_uc001wmt.1_Silent_p.D14D|IPO4_uc001wmu.2_Silent_p.D198D|IPO4_uc001wmx.1_Silent_p.D400D|IPO4_uc001wmy.1_Silent_p.D400D|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Silent_p.D536D	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	536					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		CAGGCTGAAGGTCCTCACGGC	0.612													6	4					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	14	28733846	28733846	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:28733846G>A	uc001wqd.2	+	1	227	c.87G>A	c.(85-87)GGG>GGA	p.G29G						SubName: Full=cDNA FLJ60537, highly similar to BCL2/adenovirus E1B 19 kDa protein-interacting protein 3;																		ATGGGAAAGGGGGCAGTGTTC	0.547													21	11					0	0	0.002299	0	0
NPAS3	64067	broad.mit.edu	37	14	33836419	33836419	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:33836419C>T	uc001wru.2	+	4	477	c.413C>T	c.(412-414)CCC>CTC	p.P138L	NPAS3_uc001wrs.2_Missense_Mutation_p.P125L|NPAS3_uc001wrt.2_Missense_Mutation_p.P106L|NPAS3_uc001wrv.2_Missense_Mutation_p.P108L|NPAS3_uc001wrw.2_Missense_Mutation_p.P36L	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		AGGAGAAGCCCCAGTGCACTA	0.353													11	10					0	0	0.001368	0	0
CDKL1	8814	broad.mit.edu	37	14	50796864	50796864	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:50796864G>A	uc001wxz.2	-	9	1033	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	ATP5S_uc010ant.1_Intron	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	334						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					AAGCTGGAAGGATGCTGCTGC	0.353													15	8					0	0	0.003163	0	0
PTGDR	5729	broad.mit.edu	37	14	52735046	52735047	+	Missense_Mutation	DNP	GG	AA	AA	rs142969446	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:52735046_52735047GG>AA	uc001wzq.2	+	1	616_617	c.514_515GG>AA	c.(514-516)GGG>AAG	p.G172K		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	172	Extracellular (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	CATGGGCTTCGGGAAGTTCGTG	0.639													37	22					0	0	0.004672	0	0
C14orf105	55195	broad.mit.edu	37	14	57960358	57960358	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:57960358G>A	uc001xcy.2	-	1	219	c.76C>T	c.(76-78)CCC>TCC	p.P26S	C14orf105_uc010trl.1_Missense_Mutation_p.P26S|C14orf105_uc010trm.1_5'UTR|C14orf105_uc010trn.1_5'UTR|C14orf105_uc001xcz.2_Missense_Mutation_p.P26S|C14orf105_uc010aox.1_RNA|C14orf105_uc010aoy.1_5'UTR	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	26											0						CCAGCCGAGGGAGTCTCTACC	0.453													20	15					0	0	0.001523	0	0
C14orf37	145407	broad.mit.edu	37	14	58563465	58563465	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:58563465C>T	uc001xdc.2	-	5	2177	c.2066G>A	c.(2065-2067)TGG>TAG	p.W689*	C14orf37_uc010tro.1_Nonsense_Mutation_p.W727*|C14orf37_uc001xdd.2_Nonsense_Mutation_p.W689*	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	689	Extracellular (Potential).					integral to membrane	binding				0						CTGCTGTTCCCACTCGAGGGC	0.502													6	5					0	0	0.001168	0	0
DAAM1	23002	broad.mit.edu	37	14	59791090	59791090	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:59791090C>T	uc001xdz.1	+	8	1032	c.907C>T	c.(907-909)CAT>TAT	p.H303Y	DAAM1_uc001xea.1_Missense_Mutation_p.H303Y|DAAM1_uc001xeb.1_Missense_Mutation_p.H303Y	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	303	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		CTTTAGACTTCATCTTCGCTA	0.274													26	18					0	0	0.002445	0	0
RTN1	6252	broad.mit.edu	37	14	60193865	60193865	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:60193865G>A	uc001xen.1	-	3	1746	c.1537C>T	c.(1537-1539)CGG>TGG	p.R513W	RTN1_uc001xem.1_Missense_Mutation_p.R93W	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	513					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		AGGCCCCGCCGGCTTGGCGCA	0.726													6	2					0	0	0.001984	0	0
SYT16	83851	broad.mit.edu	37	14	62463079	62463079	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:62463079G>T	uc001xfu.1	+	1	539	c.342G>T	c.(340-342)AAG>AAT	p.K114N	SYT16_uc010tsd.1_Missense_Mutation_p.K114N	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	114										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		AACATGCAAAGGACTCATGTT	0.458													43	31					8.01111e-26	1.10995e-25	0.002522	1	0
SYT16	83851	broad.mit.edu	37	14	62567416	62567416	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:62567416G>A	uc001xfu.1	+	6	2126	c.1929G>A	c.(1927-1929)CTG>CTA	p.L643L	SYT16_uc010tse.1_Silent_p.L201L	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	643										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		ACACTTTGCTGGAATCCTAGG	0.517													12	6					0	0	0.002450	0	0
SMOC1	64093	broad.mit.edu	37	14	70418998	70418998	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:70418998G>A	uc001xls.1	+	2	496	c.243G>A	c.(241-243)GTG>GTA	p.V81V	SMOC1_uc001xlt.1_Silent_p.V81V	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	81	Kazal-like.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		CCCTGGGCGTGGTGCATCGAG	0.602													24	14					0	0	0.005443	0	0
ADAM20	8748	broad.mit.edu	37	14	70990607	70990607	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:70990607G>A	uc001xme.2	-	2	1263	c.1018C>T	c.(1018-1020)CGA>TGA	p.R340*		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	290	Peptidase M12B.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		TGTTGTAGTCGATTATTAAGG	0.348													22	9					0	0	0.001882	0	0
PAPLN	89932	broad.mit.edu	37	14	73727967	73727967	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:73727967C>T	uc010ttx.1	+	17	2373	c.2210C>T	c.(2209-2211)CCT>CTT	p.P737L	PAPLN_uc001xnw.3_Missense_Mutation_p.P710L|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.P737L|PAPLN_uc010arm.2_5'UTR|PAPLN_uc010arn.2_5'Flank	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	737						proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCAGCCGGTCCTCTTGGGGAA	0.642													10	13					0	0	0.002450	0	0
HEATR4	399671	broad.mit.edu	37	14	73989442	73989442	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:73989442C>T	uc010tub.1	-	3	737	c.415G>A	c.(415-417)GAA>AAA	p.E139K	HEATR4_uc010tua.1_Missense_Mutation_p.E92K	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		GCAGAGCTTTCTGTCTTCACA	0.557													18	15					0	0	0.001882	0	0
C14orf43	91748	broad.mit.edu	37	14	74196554	74196554	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:74196554G>A	uc001xot.2	-	4	2667	c.1884C>T	c.(1882-1884)ACC>ACT	p.T628T	C14orf43_uc001xos.2_5'Flank|C14orf43_uc001xou.2_Silent_p.T628T|C14orf43_uc010tud.1_Silent_p.T628T|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	628					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		TCTGGTATGGGGTGATGTTGG	0.657													20	9					0	0	0.008871	0	0
LTBP2	4053	broad.mit.edu	37	14	74972753	74972753	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:74972753C>T	uc001xqa.2	-	28	4562	c.4175G>A	c.(4174-4176)GGA>GAA	p.G1392E		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1392					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGCCTCACCTCCAGCCCCCCG	0.627													25	17					0	0	0.006320	0	0
ISM2	145501	broad.mit.edu	37	14	77948869	77948869	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:77948869C>T	uc001xtz.2	-	4	843	c.769G>A	c.(769-771)GAA>AAA	p.E257K	ISM2_uc001xua.2_Intron|ISM2_uc001xty.2_Missense_Mutation_p.E169K|ISM2_uc010tvl.1_Missense_Mutation_p.E176K	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	257						extracellular region				skin(1)	1						CTGTCTTTTTCCTCTCCTTTG	0.358													40	18					0	0	0.005524	0	0
C14orf145	145508	broad.mit.edu	37	14	81304583	81304583	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:81304583G>A	uc001xux.2	-	10	1060	c.889C>T	c.(889-891)CAA>TAA	p.Q297*	C14orf145_uc010asz.1_5'Flank|C14orf145_uc001xuz.2_Nonsense_Mutation_p.Q297*|C14orf145_uc001xuy.1_Nonsense_Mutation_p.Q155*	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	297	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CCTTCTGATTGATTCAATAAC	0.333													34	14					0	0	0.008740	0	0
TSHR	7253	broad.mit.edu	37	14	81610058	81610058	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:81610058C>T	uc001xvd.1	+	10	1812	c.1656C>T	c.(1654-1656)CTC>CTT	p.L552L		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	552	Helical; Name=4; (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	GCTTCCTTCTCGCCCTGCTTC	0.557			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						32	8					0	0	0.002445	0	0
FLRT2	23768	broad.mit.edu	37	14	86088320	86088320	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:86088320C>T	uc001xvr.2	+	2	1229	c.462C>T	c.(460-462)GCC>GCT	p.A154A	FLRT2_uc010atd.2_Silent_p.A154A	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	154	LRR 4.|Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		AAGACGGGGCCTTCCGGGAGG	0.527													19	5					0	0	0.008871	0	0
FBLN5	10516	broad.mit.edu	37	14	92343989	92343989	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:92343989C>G	uc001xzx.3	-	10	1500	c.1027G>C	c.(1027-1029)GAC>CAC	p.D343H	FBLN5_uc010aud.2_Missense_Mutation_p.D348H|FBLN5_uc010aue.2_Missense_Mutation_p.D384H|FBLN5_uc001xzw.2_5'Flank	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	343					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				AAGGGCTGGTCTCTGCAGCCA	0.562													35	25					0	0	0.005524	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754803	94754803	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:94754803C>T	uc001yct.2	-	3	1278	c.812G>A	c.(811-813)GGT>GAT	p.G271D	SERPINA10_uc001ycu.3_Missense_Mutation_p.G271D	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	271					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		CTTGCCTGCACCGTACATCAT	0.498													30	23					0	0	0.001786	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108170	95108170	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:95108170C>T	uc001ydt.2	+	2	775	c.687C>T	c.(685-687)CTC>CTT	p.L229L		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						AGGGGAAGCTCGGGGCCTGGG	0.587													44	47					0	0	0.003610	0	0
DICER1	23405	broad.mit.edu	37	14	95593004	95593004	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:95593004C>T	uc001ydw.2	-	8	998	c.816G>A	c.(814-816)ATG>ATA	p.M272I	DICER1_uc001ydv.2_Missense_Mutation_p.M262I|DICER1_uc001ydx.2_Missense_Mutation_p.M272I	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	272	Required for interaction with PRKRA and TARBP2.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		CTTCTAATTCCATCAGCAGTC	0.333			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				32	58					0	0	0.003271	0	0
TCL6	27004	broad.mit.edu	37	14	96129881	96129881	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:96129881C>T	uc001yeq.2	+	4	1569	c.100C>T	c.(100-102)CAT>TAT	p.H34Y	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_5'UTR|TCL6_uc001yet.1_5'UTR|TCL6_uc001yeu.2_5'UTR|TCL6_uc001yev.2_5'UTR|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		cacctgtttTCATGCTATCTC	0.259			T	TRA@	T-ALL								7	12					0	0	0.001984	0	0
MIR300	100126297	broad.mit.edu	37	14	101507748	101507748	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:101507748G>A	hsa-mir-300|MI0005525	+			c.49G>A			MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank|MIR1185-2_hsa-mir-1185-2|MI0003821_5'Flank																	0						TACTTGCAATGATTATACAAG	0.493													34	23					0	0	0.005524	0	0
MIR369	442914	broad.mit.edu	37	14	101531992	101531992	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:101531992G>A	hsa-mir-369|MI0000777	+			c.58G>A			uc010txp.1_RNA|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						ATACATGGTTGATCTTTTCTC	0.512													23	19					0	0	0.002299	0	0
ASPG	374569	broad.mit.edu	37	14	104575621	104575621	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:104575621G>A	uc001yoq.1	+	13	1549	c.1489G>A	c.(1489-1491)GAG>AAG	p.E497K	ASPG_uc001yop.1_Missense_Mutation_p.E497K|ASPG_uc001yor.1_Missense_Mutation_p.E497K	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	497					lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						GTCCACCCAGGAGCTGGAGGA	0.637													14	8					0	0	0.006122	0	0
AHNAK2	113146	broad.mit.edu	37	14	105404794	105404794	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:105404794G>A	uc010axc.1	-	7	17114	c.16994C>T	c.(16993-16995)TCC>TTC	p.S5665F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S5565F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5665						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GTCATTTTTGGAATCAACACC	0.468													12	5					0	0	0.001368	0	0
ADAM6	8755	broad.mit.edu	37	14	107122309	107122309	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:107122309G>A	uc010tyt.1	-	73		c.3687C>T								Parts of antibodies, mostly variable regions.												0						GTAGTTAACGGAAGGTGAATC	0.552													19	10					0	0	0.007413	0	0
OR4M2	390538	broad.mit.edu	37	15	22369378	22369378	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:22369378C>T	uc010tzu.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GACTCGTTTTCCCTAGATAAA	0.423													7	66					0	0	0.003080	0	0
OR4N4	283694	broad.mit.edu	37	15	22382571	22382571	+	Silent	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:22382571T>A	uc001yuc.1	+	7	1080	c.99T>A	c.(97-99)ATT>ATA	p.I33I	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.I33I	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGATCTTAATTTTCTACCTTA	0.413													26	178					0	0	0.001786	0	0
Unknown	0	broad.mit.edu	37	15	22473351	22473351	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:22473351C>T	uc001yuj.1	-	1		c.3G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		ACAGGTGTTTCATGTTCTTGT	0.512													10	25					0	0	0.000978	0	0
GOLGA9P	283796	broad.mit.edu	37	15	23261906	23261906	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:23261906G>A	uc001yvh.1	+	11	1317	c.775G>A	c.(775-777)GAA>AAA	p.E259K	uc001yvl.2_5'Flank	NR_024074				RecName: Full=Putative golgin subfamily A member 6-like protein 11;												0						CCGGGGACAAGAAGAGAGGAT	0.572													12	6					0	0	0.001368	0	0
C15orf2	23742	broad.mit.edu	37	15	24922328	24922328	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:24922328C>T	uc001ywo.2	+	1	1788	c.1314C>T	c.(1312-1314)ATC>ATT	p.I438I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	438	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis			p.I438I(1)		ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GACCCCTCATCCTGCCTATCC	0.537													18	22					0	0	0.007413	0	0
C15orf2	23742	broad.mit.edu	37	15	24923400	24923400	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:24923400C>T	uc001ywo.2	+	1	2860	c.2386C>T	c.(2386-2388)CCT>TCT	p.P796S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	796					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTGAGCCTTCCTATCATGGT	0.542													26	56					0	0	0.003954	0	0
C15orf2	23742	broad.mit.edu	37	15	24923731	24923731	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:24923731G>A	uc001ywo.2	+	1	3191	c.2717G>A	c.(2716-2718)GGG>GAG	p.G906E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	906					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCCACTGATGGGCAGCAGAAG	0.502													34	77					0	0	0.006230	0	0
SNORD116-4	100033416	broad.mit.edu	37	15	25339111	25339111	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:25339111C>T	uc001yxh.1	+	19		c.2658C>T			SNORD116-4_uc001yxm.1_RNA|IPW_uc001yxn.3_RNA|SNORD116-28_uc001yxy.2_RNA|IPW_uc001yyb.3_RNA|uc001yyd.2_RNA|uc001yyi.1_5'Flank|SNORD116-24_uc001yyj.2_5'Flank					Homo sapiens clone kid4 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						GCTGGTGGATCCCTCAGGATG	0.478													3	6					0	0	0.004672	0	0
TJP1	7082	broad.mit.edu	37	15	30026535	30026536	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:30026535_30026536GG>AT	uc001zcr.2	-	12	1933_1934	c.1458_1459CC>AT	c.(1456-1461)TTCCTG>TTATTG	p.F486L	TJP1_uc010azl.2_Missense_Mutation_p.F474L|TJP1_uc001zcq.2_Missense_Mutation_p.F490L|TJP1_uc001zcs.2_Missense_Mutation_p.F486L	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	486	PDZ 3.				cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		AGGTCAAGCAGGAAAAGGACGG	0.361													12	30					0	0	0.004672	0	0
C15orf55	256646	broad.mit.edu	37	15	34648565	34648565	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:34648565G>A	uc001zif.2	+	7	2427	c.2272G>A	c.(2272-2274)GGC>AGC	p.G758S	C15orf55_uc010ucc.1_Missense_Mutation_p.G786S|C15orf55_uc010ucd.1_Missense_Mutation_p.G776S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	758						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GTATCAGGAAGGCTGCCAGGG	0.542			T	BRD3|BRD4	lethal midline carcinoma								22	42					0	0	0.002299	0	0
MEIS2	4212	broad.mit.edu	37	15	37187432	37187433	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:37187432_37187433CC>AT	uc001zjr.2	-	11	2103_2104	c.1066_1067GG>AT	c.(1066-1068)GGA>ATA	p.G356I	MEIS2_uc001zjl.2_Missense_Mutation_p.G343I|MEIS2_uc010ucj.1_Missense_Mutation_p.G336I|MEIS2_uc001zjm.2_Missense_Mutation_p.G261I|MEIS2_uc001zjn.2_Missense_Mutation_p.G210I|MEIS2_uc001zjo.2_Missense_Mutation_p.G356I|MEIS2_uc001zjp.2_Missense_Mutation_p.G349I|MEIS2_uc001zjs.2_Missense_Mutation_p.G349I|MEIS2_uc001zju.2_Missense_Mutation_p.G336I|MEIS2_uc001zjt.2_Missense_Mutation_p.G349I|MEIS2_uc001zjj.2_Missense_Mutation_p.G52I|MEIS2_uc001zjk.2_Missense_Mutation_p.G45I	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	356					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		ATATGCTGCTCCTTGGCTCACT	0.505													11	32					0	0	0.004672	0	0
THBS1	7057	broad.mit.edu	37	15	39885345	39885345	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:39885345C>T	uc001zkh.2	+	18	3091	c.2912C>T	c.(2911-2913)TCC>TTC	p.S971F	THBS1_uc010bbi.2_Missense_Mutation_p.S443F	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	971	TSP C-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AAAGGGACATCCCAAAATGAC	0.502													12	19					0	0	0.001855	0	0
PLCB2	5330	broad.mit.edu	37	15	40591081	40591081	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:40591081G>A	uc001zld.2	-	9	1069	c.768C>T	c.(766-768)TCC>TCT	p.S256S	PLCB2_uc010bbo.2_Silent_p.S256S|PLCB2_uc010ucm.1_Silent_p.S256S	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	256					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		GGAACAGCAGGGAGTTAAGCC	0.567													18	30					0	0	0.002299	0	0
PLCB2	5330	broad.mit.edu	37	15	40594354	40594354	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:40594354C>T	uc001zld.2	-	6	790	c.489G>A	c.(487-489)GGG>GGA	p.G163G	PLCB2_uc010bbo.2_Silent_p.G163G|PLCB2_uc010ucm.1_Silent_p.G163G|PLCB2_uc001zle.3_Silent_p.G163G	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	163					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCGGAATCTTCCCTTCAGAGT	0.607													43	74					0	0	0.003610	0	0
CHST14	113189	broad.mit.edu	37	15	40764480	40764480	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:40764480C>T	uc001zlw.2	+	1	1268	c.1068C>T	c.(1066-1068)ATC>ATT	p.I356I		NM_130468	NP_569735	Q8NCH0	CHSTE_HUMAN	dermatan 4 sulfotransferase 1	356	Lumenal (Potential).				carbohydrate biosynthetic process|dermatan sulfate proteoglycan metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity|phosphate binding				0		all_cancers(109;2.34e-14)|all_epithelial(112;1.08e-11)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0781)		CTAAGTATATCCTGGACTTCT	0.622													16	43					0	0	0.004007	0	0
VPS18	57617	broad.mit.edu	37	15	41191361	41191361	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:41191361C>T	uc001zne.2	+	4	684	c.345C>T	c.(343-345)GCC>GCT	p.A115A		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	115					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TGCTGATTGCCCTGAGCAGCA	0.627													10	23					0	0	0.008291	0	0
DLL4	54567	broad.mit.edu	37	15	41223949	41223949	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:41223949G>A	uc001zng.1	+	4	963	c.643G>A	c.(643-645)GAA>AAA	p.E215K		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	215	DSL.|Extracellular (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TTGGACTGGGGAATATTGCCA	0.582													5	8					0	0	0.000602	0	0
LTK	4058	broad.mit.edu	37	15	41799417	41799417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:41799417G>A	uc001zoa.3	-	11	1595	c.1417C>T	c.(1417-1419)CGA>TGA	p.R473*	LTK_uc001zob.3_Nonsense_Mutation_p.R412*|LTK_uc010ucx.1_Intron|LTK_uc010bcg.2_Nonsense_Mutation_p.R171*	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	473	Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		GCAGAGGTTCGAAGCTTGCTC	0.617										TSP Lung(18;0.14)			10	18					0	0	0.000978	0	0
TGM5	9333	broad.mit.edu	37	15	43531403	43531403	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:43531403C>T	uc001zrd.1	-	8	1071	c.1063G>A	c.(1063-1065)GGC>AGC	p.G355S	TGM5_uc001zrc.1_Missense_Mutation_p.G12S|TGM5_uc001zre.1_Missense_Mutation_p.G273S	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	355					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	ACCTGCCAGCCTCCATATGCA	0.602													11	30					0	0	0.001855	0	0
TGM7	116179	broad.mit.edu	37	15	43571345	43571345	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:43571345G>A	uc001zrf.1	-	11	1814	c.1809C>T	c.(1807-1809)ATC>ATT	p.I603I		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	603					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GCTCCAGACAGATATCTTTTA	0.552													3	14					0	0	0.004672	0	0
SLC12A1	6557	broad.mit.edu	37	15	48539590	48539590	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:48539590G>A	uc001zwn.3	+	13	1833	c.1617G>A	c.(1615-1617)GGG>GGA	p.G539G	SLC12A1_uc010uew.1_Silent_p.G345G|SLC12A1_uc010bem.2_Silent_p.G539G|SLC12A1_uc001zwq.3_Silent_p.G310G|SLC12A1_uc001zwr.3_Silent_p.G266G	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	539	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	AGGGATATGGGAAAAACAATG	0.348													12	28					0	0	0.001368	0	0
SLC12A1	6557	broad.mit.edu	37	15	48541797	48541797	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:48541797C>T	uc001zwn.3	+	14	1926	c.1710C>T	c.(1708-1710)ATC>ATT	p.I570I	SLC12A1_uc010uew.1_Silent_p.I376I|SLC12A1_uc010bem.2_Silent_p.I570I|SLC12A1_uc001zwq.3_Silent_p.I341I|SLC12A1_uc001zwr.3_Silent_p.I297I	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	570	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TTGCTCCCATCATCTCCAACT	0.428													14	39					0	0	0.004990	0	0
FBN1	2200	broad.mit.edu	37	15	48738959	48738959	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:48738959G>A	uc001zwx.1	-	47	6060	c.5732C>T	c.(5731-5733)TCC>TTC	p.S1911F	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1911	EGF-like 32; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GCAGTTGAAGGAACCAATTGT	0.398													6	20					0	0	0.003080	0	0
ATP8B4	79895	broad.mit.edu	37	15	50158637	50158637	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:50158637G>A	uc001zxu.2	-	26	3214	c.3072C>T	c.(3070-3072)TTC>TTT	p.F1024F	ATP8B4_uc010ber.2_Silent_p.F897F|ATP8B4_uc010ufd.1_Silent_p.F834F|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Silent_p.F27F	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1024	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TCCCCCAGATGAAGACGTGAT	0.378													16	19					0	0	0.004990	0	0
ATP8B4	79895	broad.mit.edu	37	15	50339641	50339641	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:50339641C>T	uc001zxu.2	-	4	250	c.108G>A	c.(106-108)TCG>TCA	p.S36S	ATP8B4_uc010ber.2_5'UTR|ATP8B4_uc010ufd.1_5'UTR|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	36	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TATTATATTTCGATGTGTGGA	0.358													6	27					0	0	0.001168	0	0
HDC	3067	broad.mit.edu	37	15	50546441	50546441	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:50546441C>T	uc001zxz.2	-	6	712	c.606G>A	c.(604-606)TTG>TTA	p.L202L	HDC_uc001zxy.2_5'Flank|HDC_uc010uff.1_Silent_p.L202L|HDC_uc010bet.1_Silent_p.L123L|HDC_uc010beu.1_Silent_p.L202L	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	202					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	CAAGGGAAATCAAACCAGCCT	0.517													12	30					0	0	0.001855	0	0
MYO5C	55930	broad.mit.edu	37	15	52534379	52534379	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:52534379C>T	uc010bff.2	-	20	2559	c.2422G>A	c.(2422-2424)GCT>ACT	p.A808T	MYO5C_uc010uga.1_Intron|MYO5C_uc010ugb.1_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	808	IQ 3.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		GCTGCCCAAGCTTCTTTTAAG	0.483													39	156					0	0	0.003214	0	0
MYO5C	55930	broad.mit.edu	37	15	52536688	52536688	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:52536688C>T	uc010bff.2	-	19	2392	c.2255G>A	c.(2254-2256)CGA>CAA	p.R752Q	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	752	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TTTATCCAATCGAAGTTTCTC	0.418													8	38					0	0	0.004482	0	0
PYGO1	26108	broad.mit.edu	37	15	55838929	55838929	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:55838929G>A	uc010bfl.1	-	3	608	c.552C>T	c.(550-552)TTC>TTT	p.F184F	PYGO1_uc002adf.1_Silent_p.F184F	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	184	Asn-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		GAATTTGACTGAAATTTTCAG	0.333													11	66					0	0	0.000978	0	0
RFX7	64864	broad.mit.edu	37	15	56386044	56386044	+	Silent	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:56386044A>T	uc010bfn.2	-	9	3882	c.3882T>A	c.(3880-3882)CCT>CCA	p.P1294P	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Silent_p.P1108P	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	1197					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						GGTTGGCACTAGGAAAAACAG	0.423													18	53					0	0	0.007413	0	0
CGNL1	84952	broad.mit.edu	37	15	57730548	57730548	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:57730548G>A	uc002aeg.2	+	2	427	c.351G>A	c.(349-351)CTG>CTA	p.L117L	CGNL1_uc010bfw.2_Silent_p.L117L	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	117	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TAAGAAACCTGAAACAGCCCC	0.507													8	43					0	0	0.006214	0	0
CGNL1	84952	broad.mit.edu	37	15	57731424	57731424	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:57731424G>A	uc002aeg.2	+	2	1303	c.1227G>A	c.(1225-1227)AGG>AGA	p.R409R	CGNL1_uc010bfw.2_Silent_p.R409R	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	409	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AATTCAGTAGGAACTTGGGCA	0.557													17	60					0	0	0.006122	0	0
GCOM1	145781	broad.mit.edu	37	15	57913897	57913897	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:57913897C>T	uc002aei.2	+	4	529	c.410C>T	c.(409-411)TCA>TTA	p.S137L	GCOM1_uc002aej.2_Missense_Mutation_p.S137L|GCOM1_uc002aek.2_Intron|GCOM1_uc002ael.2_Intron|GCOM1_uc002aem.2_Missense_Mutation_p.S137L|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.S137L|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	137	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						CAGGAACTATCAGTAAGTCAT	0.468													21	65					0	0	0.002299	0	0
AQP9	366	broad.mit.edu	37	15	58467154	58467154	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:58467154C>T	uc002aez.2	+	4	771	c.414C>T	c.(412-414)ATC>ATT	p.I138I	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Silent_p.I73I	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	138	Extracellular (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		AACTGCTGATCGTGGGAGAAA	0.458													9	40					0	0	0.004482	0	0
VPS13C	54832	broad.mit.edu	37	15	62182392	62182392	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:62182392G>A	uc002agz.2	-	67	9387	c.9313C>T	c.(9313-9315)CAG>TAG	p.Q3105*	VPS13C_uc002aha.2_Nonsense_Mutation_p.Q3062*|VPS13C_uc002ahb.1_Nonsense_Mutation_p.Q3105*|VPS13C_uc002ahc.1_Nonsense_Mutation_p.Q3062*	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3105					protein localization					ovary(2)	2						GAAACTTCCTGCTTGCTTTCA	0.388													8	25					0	0	0.004482	0	0
TLN2	83660	broad.mit.edu	37	15	63047733	63047733	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:63047733C>T	uc002alb.3	+	34	4479	c.4479C>T	c.(4477-4479)GTC>GTT	p.V1493V	TLN2_uc002alc.3_5'UTR	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1493					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CTTTGTAGGTCCTGTCAGCCG	0.587													4	9					0	0	0.001168	0	0
TLN2	83660	broad.mit.edu	37	15	63127944	63127944	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:63127944C>T	uc002alb.3	+	53	7137	c.7137C>T	c.(7135-7137)TCC>TCT	p.S2379S	TLN2_uc002alc.3_Silent_p.S772S|TLN2_uc010uic.1_5'UTR|uc002ale.1_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2379	I/LWEQ.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AGGTGGGCTCCATCCCTGCCA	0.592													21	90					0	0	0.004656	0	0
HERC1	8925	broad.mit.edu	37	15	63966647	63966647	+	Silent	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:63966647T>G	uc002amp.2	-	38	7888	c.7740A>C	c.(7738-7740)ATA>ATC	p.I2580I		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2580					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						ATGCTCTCTTTATGGGTGACC	0.488													8	25					0	0	0.004482	0	0
ZNF609	23060	broad.mit.edu	37	15	64968300	64968300	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:64968300T>C	uc002ann.2	+	4	3247	c.3247T>C	c.(3247-3249)TTA>CTA	p.L1083L		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1083						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CATTCCCAAGTTAGATGACTC	0.572													13	44					0	0	0.002450	0	0
RPL4	6124	broad.mit.edu	37	15	66794230	66794230	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:66794230G>A	uc002apv.2	-	5	498	c.442C>T	c.(442-444)CCT>TCT	p.P148S	RPL4_uc010bhr.2_Missense_Mutation_p.P54S|RPL4_uc002apw.2_Missense_Mutation_p.P54S|RPL4_uc002apx.2_Missense_Mutation_p.P54S|RPL4_uc010ujq.1_Missense_Mutation_p.P148S|SNORD18C_uc010bhs.1_5'Flank	NM_000968	NP_000959	P36578	RL4_HUMAN	ribosomal protein L4	148					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						GGAAGTTCAGGAACTTCCTCA	0.343													8	20					0	0	0.004482	0	0
FEM1B	10116	broad.mit.edu	37	15	68582855	68582855	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:68582855C>T	uc002arg.2	+	2	1774	c.1159C>T	c.(1159-1161)CGA>TGA	p.R387*	FEM1B_uc002arh.2_Nonsense_Mutation_p.R307*	NM_015322	NP_056137	Q9UK73	FEM1B_HUMAN	fem-1 homolog b	387					apoptosis|induction of apoptosis|regulation of DNA damage checkpoint|regulation of ubiquitin-protein ligase activity	cytoplasm|nucleus	death receptor binding|ubiquitin-protein ligase activity				0						GGATCTTCTTCGATTTGCTCA	0.398													7	38					0	0	0.001984	0	0
MYO9A	4649	broad.mit.edu	37	15	72338673	72338673	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:72338673G>A	uc002atl.3	-	2	705	c.232C>T	c.(232-234)CCA>TCA	p.P78S	MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Missense_Mutation_p.P78S|MYO9A_uc002atn.1_Missense_Mutation_p.P78S	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	78	Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CAATCTGTTGGATTGAGAATC	0.418													9	39					0	0	0.008291	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72953609	72953609	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:72953609C>T	uc010uks.1	+	8	610	c.569C>T	c.(568-570)TCG>TTG	p.S190L		NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	190	Potential.										0						ATCCAGTCCTCGAGCTGCAGA	0.562													11	97					0	0	0.000978	0	0
BBS4	585	broad.mit.edu	37	15	73023677	73023677	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:73023677C>A	uc002avb.2	+	11	786	c.743C>A	c.(742-744)ACC>AAC	p.T248N	BBS4_uc010ukv.1_Missense_Mutation_p.T236N|BBS4_uc002avc.2_Missense_Mutation_p.T76N|BBS4_uc002avd.2_Missense_Mutation_p.T256N|BBS4_uc010bja.2_Missense_Mutation_p.T4N	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	248	Interaction with PCM1.|TPR 6.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						ATGATGCAGACCCACGGGGAC	0.488									Bardet-Biedl_syndrome				18	40					1.33834e-09	1.84162e-09	0.007413	1	0
PML	5371	broad.mit.edu	37	15	74325046	74325046	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:74325046C>T	uc002awv.2	+	5	1528	c.1388C>T	c.(1387-1389)TCC>TTC	p.S463F	PML_uc002awm.2_Missense_Mutation_p.S463F|PML_uc002awl.2_Intron|PML_uc002awj.1_Intron|PML_uc002awk.2_Missense_Mutation_p.S463F|PML_uc002awn.2_Missense_Mutation_p.S463F|PML_uc002awo.2_Intron|PML_uc002awp.2_Intron|PML_uc002awq.2_Missense_Mutation_p.S463F|PML_uc002awr.2_Missense_Mutation_p.S463F|PML_uc002aws.2_Intron|PML_uc002awt.2_Intron|PML_uc002awu.2_Intron|PML_uc010ule.1_Missense_Mutation_p.S24F|PML_uc002awx.2_Intron|PML_uc002awy.2_Intron	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	463					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						AAAGGCCCTTCCTATGGAGAG	0.627			T	RARA|PAX5	APL|ALL								12	24					0	0	0.001855	0	0
ISLR	3671	broad.mit.edu	37	15	74468479	74468479	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:74468479C>T	uc002axg.1	+	2	1562	c.1280C>T	c.(1279-1281)TCC>TTC	p.S427F	ISLR_uc002axh.1_Missense_Mutation_p.S427F	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	427					cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TTCCTCACCTCCTTCTAGCCC	0.642													8	24					0	0	0.004482	0	0
STRA6	64220	broad.mit.edu	37	15	74481544	74481544	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:74481544G>A	uc002axk.2	-	12	1184	c.1002C>T	c.(1000-1002)TCC>TCT	p.S334S	STRA6_uc002axi.2_Silent_p.S143S|STRA6_uc010ulh.1_Silent_p.S372S|STRA6_uc002axj.2_Silent_p.S373S|STRA6_uc010bji.2_Silent_p.S334S|STRA6_uc002axl.2_Silent_p.S266S|STRA6_uc002axm.2_Silent_p.S334S|STRA6_uc002axn.2_Silent_p.S325S|STRA6_uc010uli.1_Silent_p.S371S|STRA6_uc010bjj.1_RNA	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	334	Helical; (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						CCAGCAGGTAGGAGACATCCG	0.637													3	9					0	0	0.004672	0	0
STRA6	64220	broad.mit.edu	37	15	74494575	74494575	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:74494575G>A	uc002axk.2	-	2	216	c.34C>T	c.(34-36)CCC>TCC	p.P12S	STRA6_uc010ulh.1_Missense_Mutation_p.P50S|STRA6_uc002axj.2_Missense_Mutation_p.P51S|STRA6_uc010bji.2_Missense_Mutation_p.P12S|STRA6_uc002axl.2_5'UTR|STRA6_uc002axm.2_Missense_Mutation_p.P12S|STRA6_uc002axn.2_Missense_Mutation_p.P12S|STRA6_uc010uli.1_Missense_Mutation_p.P49S|STRA6_uc010bjj.1_RNA|STRA6_uc010bjk.2_Missense_Mutation_p.P12S	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	12	Extracellular (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						GTGGCCCCGGGGGAGGTCTGG	0.597													13	33					0	0	0.004007	0	0
CYP11A1	1583	broad.mit.edu	37	15	74631586	74631586	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:74631586G>A	uc002axt.2	-	7	1383	c.1228C>T	c.(1228-1230)CCT>TCT	p.P410S	CYP11A1_uc002axs.2_Missense_Mutation_p.P252S|CYP11A1_uc010bjm.1_Missense_Mutation_p.P252S|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Intron|CYP11A1_uc010bjp.1_RNA	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	410					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	ACCTTGGCAGGAATCATGTAA	0.577													6	31					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	15	76073154	76073154	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:76073154G>A	uc010umm.1	+	6	443	c.366G>A	c.(364-366)AAG>AAA	p.K122K	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CATTGGAAAAGGCAGACTTGA	0.473													22	110					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	15	76073342	76073342	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:76073342C>T	uc010umm.1	+	7	535	c.458C>T	c.(457-459)TCC>TTC	p.S153F	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CTGCAATACTCCTTACAGCGT	0.552													16	34					0	0	0.004007	0	0
RASGRF1	5923	broad.mit.edu	37	15	79320162	79320162	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:79320162C>T	uc002beq.2	-	9	1677	c.1302G>A	c.(1300-1302)CGG>CGA	p.R434R	RASGRF1_uc002bep.2_Silent_p.R434R|RASGRF1_uc010blm.1_Silent_p.R356R|RASGRF1_uc002ber.3_Silent_p.R434R	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	434					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CCAGGTTTTTCCGGATGTTCT	0.552													23	82					0	0	0.003954	0	0
RASGRF1	5923	broad.mit.edu	37	15	79339113	79339113	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:79339113C>T	uc002beq.2	-	5	1228	c.853G>A	c.(853-855)GAC>AAC	p.D285N	RASGRF1_uc002bep.2_Missense_Mutation_p.D285N|RASGRF1_uc010blm.1_Missense_Mutation_p.D207N|RASGRF1_uc002ber.3_Missense_Mutation_p.D285N	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	285	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CTGCTGACGTCGTCGTGTGTG	0.572													20	81					0	0	0.003330	0	0
IL16	3603	broad.mit.edu	37	15	81585006	81585006	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:81585006C>T	uc002bgh.3	+	12	1906	c.1530C>T	c.(1528-1530)TCC>TCT	p.S510S	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Silent_p.S510S|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Silent_p.S552S|IL16_uc002bgg.2_Silent_p.S510S|IL16_uc002bgi.1_5'UTR|IL16_uc002bgj.2_Silent_p.S4S|IL16_uc002bgk.2_5'Flank	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	510					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TGATCCGCTCCAGCAGTGACA	0.617													6	31					0	0	0.001168	0	0
IL16	3603	broad.mit.edu	37	15	81592524	81592524	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:81592524C>T	uc002bgh.3	+	14	3233	c.2857C>T	c.(2857-2859)CAA>TAA	p.Q953*	IL16_uc010blq.1_Nonsense_Mutation_p.Q907*|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Nonsense_Mutation_p.Q995*|IL16_uc002bgg.2_Nonsense_Mutation_p.Q953*|IL16_uc002bgi.1_Nonsense_Mutation_p.Q343*|IL16_uc002bgj.2_Nonsense_Mutation_p.Q447*|IL16_uc002bgk.2_Nonsense_Mutation_p.Q252*|IL16_uc002bgl.1_Nonsense_Mutation_p.Q252*|IL16_uc010unq.1_Nonsense_Mutation_p.Q252*	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	953					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TGAGGAATCTCAAGGCCCAGT	0.612													13	13					0	0	0.001855	0	0
FSD2	123722	broad.mit.edu	37	15	83455883	83455883	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:83455883C>T	uc002bjd.2	-	2	427	c.260G>A	c.(259-261)GGG>GAG	p.G87E	FSD2_uc010uol.1_Missense_Mutation_p.G87E|FSD2_uc010uom.1_Missense_Mutation_p.G87E	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	87										central_nervous_system(1)	1						AAACTCATCCCCTAATTCATG	0.458													13	134					0	0	0.002450	0	0
SLC28A1	9154	broad.mit.edu	37	15	85461778	85461778	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:85461778C>T	uc002blg.2	+	10	1021	c.819C>T	c.(817-819)TTC>TTT	p.F273F	SLC28A1_uc010upd.1_Silent_p.F195F|SLC28A1_uc010bnb.2_Silent_p.F273F|SLC28A1_uc010upe.1_Silent_p.F273F|SLC28A1_uc010upf.1_Silent_p.F273F|SLC28A1_uc010upg.1_Silent_p.F273F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	273	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TTGTCTTTTTCAGCTGTGTCA	0.597													22	102					0	0	0.005443	0	0
ACAN	176	broad.mit.edu	37	15	89382265	89382265	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:89382265G>A	uc010upo.1	+	3	816	c.442G>A	c.(442-444)GTC>ATC	p.V148I	ACAN_uc002bmx.2_Missense_Mutation_p.V148I|ACAN_uc010upp.1_Missense_Mutation_p.V148I|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	148					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CACCCTGGAAGTCGTGGTGAA	0.562													8	46					0	0	0.004482	0	0
ACAN	176	broad.mit.edu	37	15	89399999	89399999	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:89399999C>T	uc010upo.1	+	12	4557	c.4183C>T	c.(4183-4185)CCT>TCT	p.P1395S	ACAN_uc010upp.1_Missense_Mutation_p.P1395S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1395					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CAGCGGGCTTCCTTCTGGAGA	0.547													32	79					0	0	0.004878	0	0
FANCI	55215	broad.mit.edu	37	15	89836049	89836049	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:89836049C>T	uc010bnp.1	+	21	2213	c.2123C>T	c.(2122-2124)TCC>TTC	p.S708F	FANCI_uc002bnm.1_Missense_Mutation_p.S708F|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Missense_Mutation_p.S529F|FANCI_uc002bnq.1_Missense_Mutation_p.S121F	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	708					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					ATATTGGAGTCCATTACTAAT	0.323								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				13	79					0	0	0.002450	0	0
FURIN	5045	broad.mit.edu	37	15	91424816	91424816	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:91424816T>G	uc002bpu.1	+	16	2309	c.2093T>G	c.(2092-2094)GTG>GGG	p.V698G	FES_uc010uqj.1_5'Flank|FES_uc010uqk.1_5'Flank|FES_uc002bpw.2_5'Flank|FES_uc002bpv.2_5'Flank	NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	698	Cys-rich.				cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			CCCCCGGAGGTGGAGGCGGGG	0.697													33	109					0	0	0.007835	0	0
FES	2242	broad.mit.edu	37	15	91434838	91434838	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:91434838C>T	uc002bpv.2	+	12	1681	c.1585C>T	c.(1585-1587)CAC>TAC	p.H529Y	FES_uc010uqj.1_Missense_Mutation_p.H401Y|FES_uc010uqk.1_Missense_Mutation_p.H511Y|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.H401Y|FES_uc002bpx.2_Missense_Mutation_p.H459Y|FES_uc002bpy.2_Missense_Mutation_p.H471Y	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	529	SH2.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GCTCATCGACCACCTACTGAG	0.627													42	266					0	0	0.003610	0	0
PRC1	9055	broad.mit.edu	37	15	91524205	91524206	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:91524205_91524206CG>AT	uc002bqm.2	-	6	887_888	c.730_731CG>AT	c.(730-732)CGA>ATA	p.R244I	PRC1_uc002bqn.2_Missense_Mutation_p.R244I|PRC1_uc002bqo.2_Missense_Mutation_p.R244I|PRC1_uc010uqs.1_Missense_Mutation_p.R203I|PRC1_uc010uqt.1_3'UTR	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	244	Potential.|Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CCAGAGCTCTCGGATTTGAGTA	0.5													8	719					0	0	0.004672	0	0
SV2B	9899	broad.mit.edu	37	15	91795075	91795075	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:91795075G>A	uc002bqv.2	+	2	869	c.478G>A	c.(478-480)GCG>ACG	p.A160T	SV2B_uc002bqt.2_Missense_Mutation_p.A160T|SV2B_uc010uqv.1_Missense_Mutation_p.A9T|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	160	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GGGAATGATGGCGGGCGCCTT	0.502													47	201					0	0	0.003610	0	0
MCTP2	55784	broad.mit.edu	37	15	95013640	95013640	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:95013640C>T	uc002btj.2	+	20	2504	c.2439C>T	c.(2437-2439)TTC>TTT	p.F813F	MCTP2_uc010boj.2_Silent_p.F542F|MCTP2_uc010bok.2_Silent_p.F758F|MCTP2_uc002btl.2_Silent_p.F401F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	813	Helical; (Potential).				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TTTTGTATTTCATTCCACTGC	0.403													29	102					0	0	0.003271	0	0
C15orf51	196968	broad.mit.edu	37	15	100332708	100332708	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr15:100332708G>A	uc010urx.1	-	5		c.1484C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						CATCTCTGCAggggtgggggt	0.517													9	26					0	0	0.008291	0	0
CACNA1H	8912	broad.mit.edu	37	16	1261966	1261966	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:1261966C>T	uc002cks.2	+	25	4835	c.4587C>T	c.(4585-4587)CCC>CCT	p.P1529P	CACNA1H_uc002ckt.2_Silent_p.P1529P|CACNA1H_uc002cku.2_Silent_p.P235P|CACNA1H_uc010brj.2_Silent_p.P235P|CACNA1H_uc002ckv.2_Silent_p.P235P	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1529	Extracellular (Potential).|III.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	ACCACAACCCCTGGATGCTGC	0.647													55	72					0	0	0.003610	0	0
PTX4	390667	broad.mit.edu	37	16	1537890	1537891	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:1537890_1537891GG>AA	uc010uvf.1	-	2	207_208	c.207_208CC>TT	c.(205-210)GTCCGG>GTTTGG	p.R70W		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	75						extracellular region	metal ion binding				0						CTCCGGAACCGGACGTCAACGT	0.619													22	78					0	0	0.004672	0	0
NME3	4832	broad.mit.edu	37	16	1820659	1820659	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:1820659C>T	uc002cmm.2	-	5	676	c.501G>A	c.(499-501)CTG>CTA	p.L167L	NME3_uc010brv.2_RNA|EME2_uc002cmq.1_5'Flank|EME2_uc010brw.1_5'Flank	NM_002513	NP_002504	Q13232	NDK3_HUMAN	nucleoside diphosphate kinase 3	167					apoptosis|CTP biosynthetic process|GTP biosynthetic process|induction of apoptosis|UTP biosynthetic process		ATP binding|metal ion binding|nucleoside diphosphate kinase activity				0						GCTACTCATACAGCCAGTGCC	0.682													5	4					0	0	0.001984	0	0
MMP25	64386	broad.mit.edu	37	16	3107594	3107594	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:3107594G>A	uc002cth.2	+	7	1223	c.986G>A	c.(985-987)GGG>GAG	p.G329E	uc002ctj.1_Intron	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	329	Hemopexin-like 1.				inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						AACATCCGAGGGGAAACTTTC	0.368													25	36					0	0	0.005443	0	0
CREBBP	1387	broad.mit.edu	37	16	3820669	3820669	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:3820669G>A	uc002cvv.2	-	14	2986	c.2782C>T	c.(2782-2784)CCG>TCG	p.P928S	CREBBP_uc002cvw.2_Missense_Mutation_p.P890S	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	928					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGAGGCTGCGGGGTCACCTGG	0.672			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				57	48					0	0	0.003610	0	0
A2BP1	54715	broad.mit.edu	37	16	7703829	7703829	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:7703829C>T	uc002cys.2	+	12	1758	c.770C>T	c.(769-771)CCG>CTG	p.P257L	A2BP1_uc010buf.1_Missense_Mutation_p.P257L|A2BP1_uc002cyr.1_Missense_Mutation_p.P256L|A2BP1_uc002cyt.2_Missense_Mutation_p.P230L|A2BP1_uc010uxz.1_Missense_Mutation_p.P300L|A2BP1_uc010uya.1_Missense_Mutation_p.P214L|A2BP1_uc002cyv.1_Missense_Mutation_p.P257L|A2BP1_uc010uyb.1_Missense_Mutation_p.P257L|A2BP1_uc002cyw.2_Missense_Mutation_p.P277L|A2BP1_uc002cyy.2_Missense_Mutation_p.P277L|A2BP1_uc002cyx.2_Missense_Mutation_p.P277L|A2BP1_uc010uyc.1_Missense_Mutation_p.P250L	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	257					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCAGGCTTCCCGTATCCAGCA	0.602													14	23					0	0	0.004007	0	0
A2BP1	54715	broad.mit.edu	37	16	7760624	7760624	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:7760624G>A	uc002cys.2	+	16	2060	c.1072_splice	c.e16-1	p.N358_splice	A2BP1_uc002cyt.2_Splice_Site_p.N331_splice|A2BP1_uc010uyb.1_Splice_Site_p.N358_splice|A2BP1_uc002cyw.2_Splice_Site_p.*396_splice|A2BP1_uc002cyy.2_Splice_Site_p.N379_splice|A2BP1_uc002cyx.2_Intron|A2BP1_uc010uyc.1_Splice_Site_p.N352_splice	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4						mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CTTTGTTTCAGAATGCTTTTG	0.403													28	48					0	0	0.002096	0	0
ABAT	18	broad.mit.edu	37	16	8858602	8858602	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:8858602C>T	uc002czc.3	+	8	621	c.455C>T	c.(454-456)CCC>CTC	p.P152L	ABAT_uc002czd.3_Missense_Mutation_p.P152L|ABAT_uc010buh.2_Missense_Mutation_p.P94L|ABAT_uc010bui.2_Missense_Mutation_p.P152L	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	152					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	CAGGTGGCTCCCAAAGGGATG	0.587													16	24					0	0	0.004007	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857170	9857170	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:9857170A>C	uc002czo.3	-	13	4779	c.4231T>G	c.(4231-4233)TAC>GAC	p.Y1411D	GRIN2A_uc010uym.1_Missense_Mutation_p.Y1411D|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1411	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTGGAACAGTACGATGCCGTT	0.502													30	22					0	0	0.001786	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274188	10274188	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:10274188C>T	uc002czo.3	-	2	629	c.81G>A	c.(79-81)GCG>GCA	p.A27A	GRIN2A_uc010uym.1_Silent_p.A27A|GRIN2A_uc002czr.3_Silent_p.A27A|GRIN2A_uc010buk.2_Silent_p.A27A	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	27	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GACCCTTCTCCGCCGCCGCGC	0.682													8	20					0	0	0.004482	0	0
FAM18A	780776	broad.mit.edu	37	16	10867224	10867224	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:10867224C>T	uc010buo.1	-	5	670	c.399G>A	c.(397-399)ATG>ATA	p.M133I	FAM18A_uc010uyr.1_RNA|FAM18A_uc010uys.1_RNA|FAM18A_uc010uyt.1_RNA|FAM18A_uc010bun.2_RNA|FAM18A_uc010uyu.1_RNA|FAM18A_uc002dad.3_RNA|FAM18A_uc002daf.1_RNA|FAM18A_uc002dae.1_Missense_Mutation_p.M69I	NM_001079512	NP_001072980	A6NH52	FA18A_HUMAN	hypothetical protein LOC780776	133	Helical; (Potential).					integral to membrane					0						CAATCCATATCATGGGGCAGA	0.423													16	40					0	0	0.003163	0	0
CIITA	4261	broad.mit.edu	37	16	11000490	11000490	+	Missense_Mutation	SNP	G	A	A	rs137852602		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:11000490G>A	uc002dai.3	+	11	1274	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K	CIITA_uc002daj.3_Missense_Mutation_p.E382K|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.E381K|CIITA_uc002dah.2_Missense_Mutation_p.E333K|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	381					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CCTGGAGCGGGAACTGGCCAC	0.687			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								11	13					0	0	0.000978	0	0
SNX29	92017	broad.mit.edu	37	16	12223552	12223552	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:12223552C>T	uc002dby.3	+	6	433	c.377C>T	c.(376-378)ACC>ATC	p.T126I	SNX29_uc010uyx.1_Missense_Mutation_p.T153I	NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	126	Potential.				cell communication		phosphatidylinositol binding			ovary(1)	1						GAGGTGGACACCTTGAAAAGG	0.602													8	3					0	0	0.004482	0	0
SNX29	92017	broad.mit.edu	37	16	12492328	12492328	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:12492328C>T	uc002dby.3	+	10	826	c.770C>T	c.(769-771)TCC>TTC	p.S257F		NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	257					cell communication		phosphatidylinositol binding			ovary(1)	1						AGTCAAACGTCCGAAGACCAG	0.463													46	60					0	0	0.003610	0	0
ABCC6P2	730013	broad.mit.edu	37	16	14916816	14916816	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:14916816G>A	uc002dcu.2	-	2	179	c.146C>T	c.(145-147)CCC>CTC	p.P49L		NR_023387				SubName: Full=ATP-binding cassette, sub-family C (CFTR/MRP), member 6; SubName: Full=Up-regulated gene 7;												0						GAGGTAGATGGGACCAAGGAC	0.612													18	20					0	0	0.004990	0	0
MYH11	4629	broad.mit.edu	37	16	15835746	15835746	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:15835746C>T	uc002ddy.2	-	21	2630	c.2523G>A	c.(2521-2523)GTG>GTA	p.V841V	MYH11_uc002ddv.2_Silent_p.V848V|MYH11_uc002ddw.2_Silent_p.V841V|MYH11_uc002ddx.2_Silent_p.V848V|MYH11_uc010bvg.2_Silent_p.V673V	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	841					axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCAGTGGCTTCACCTGCACAC	0.438			T	CBFB	AML								19	17					0	0	0.007413	0	0
ABCC6	368	broad.mit.edu	37	16	16263549	16263549	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:16263549C>T	uc002den.3	-	22	2986	c.2949G>A	c.(2947-2949)CAG>CAA	p.Q983Q	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	983	ABC transmembrane type-1 2.|Extracellular (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GCAGGGCTGCCTGCGTCTGCT	0.667													9	7					0	0	0.000978	0	0
SYT17	51760	broad.mit.edu	37	16	19278342	19278342	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:19278342C>T	uc002dfw.2	+	8	1700	c.1369C>T	c.(1369-1371)CTG>TTG	p.L457L	SYT17_uc002dfx.2_Silent_p.L396L|SYT17_uc002dfy.2_Silent_p.L453L	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	457						membrane|synaptic vesicle	transporter activity			ovary(1)	1						GTGGCATAGCCTGAGGTCCCG	0.567													4	22					0	0	0.000248	0	0
TMC5	79838	broad.mit.edu	37	16	19455440	19455440	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:19455440C>T	uc002dgc.3	+	4	1575	c.826C>T	c.(826-828)CGT>TGT	p.R276C	TMC5_uc010vaq.1_Missense_Mutation_p.R276C|TMC5_uc002dgb.3_Missense_Mutation_p.R276C|TMC5_uc010var.1_Missense_Mutation_p.R276C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	276	Extracellular (Potential).					integral to membrane				skin(1)	1						GCCCTCATTTCGTCACAGGAG	0.438													38	31					0	0	0.005524	0	0
TMC5	79838	broad.mit.edu	37	16	19471648	19471648	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:19471648G>A	uc002dgc.3	+	6	1889	c.1140G>A	c.(1138-1140)AGG>AGA	p.R380R	TMC5_uc010vaq.1_Silent_p.R380R|TMC5_uc002dgb.3_Silent_p.R380R|TMC5_uc010var.1_Silent_p.R380R|TMC5_uc002dgd.1_Silent_p.R134R|TMC5_uc002dge.3_Silent_p.R134R|TMC5_uc002dgf.3_Silent_p.R42R|TMC5_uc002dgg.3_Silent_p.R21R	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	380	Extracellular (Potential).					integral to membrane				skin(1)	1						AAGAGAAAAGGAACCTTAGGT	0.388													7	14					0	0	0.003080	0	0
C16orf62	57020	broad.mit.edu	37	16	19648960	19648960	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:19648960C>T	uc002dgn.1	+	20	1692	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F	C16orf62_uc002dgo.1_Silent_p.F493F|C16orf62_uc002dgp.1_Silent_p.F309F	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	560						integral to membrane				ovary(1)	1						TCCATGACTTCTCAGTTCTTT	0.194													16	33					0	0	0.001882	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883577	19883577	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:19883577G>A	uc002dgt.2	-	2	699	c.591C>T	c.(589-591)CCC>CCT	p.P197P	GPRC5B_uc010vav.1_Silent_p.P223P	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	197	Extracellular (Potential).									lung(1)|breast(1)|skin(1)	3						CAAAGTCCATGGGCTCGTAGG	0.607													22	31					0	0	0.002780	0	0
UMOD	7369	broad.mit.edu	37	16	20359594	20359594	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:20359594C>T	uc002dgz.2	-	4	1053	c.924G>A	c.(922-924)TCG>TCA	p.S308S	UMOD_uc002dha.2_Silent_p.S308S|UMOD_uc002dhb.2_Silent_p.S341S	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	308					cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						TGCCATTATTCGATTTGCAGT	0.552													37	108					0	0	0.008740	0	0
ACSM2A	123876	broad.mit.edu	37	16	20482538	20482538	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:20482538G>A	uc010bwe.2	+	6	979	c.740G>A	c.(739-741)GGT>GAT	p.G247D	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.G168D|ACSM2A_uc002dhf.3_Missense_Mutation_p.G247D|ACSM2A_uc002dhg.3_Missense_Mutation_p.G247D|ACSM2A_uc010vay.1_Missense_Mutation_p.G168D	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	247					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						ATGGATGCTGGGTAAGCTGAG	0.483													23	24					0	0	0.007291	0	0
ACSM1	116285	broad.mit.edu	37	16	20638539	20638540	+	Silent	DNP	TC	GT	GT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:20638539_20638540TC>GT	uc002dhm.1	-	10	1466_1467	c.1398_1399GA>AC	c.(1396-1401)GGGAGG>GGACGG	p.466_467GR>GR	ACSM1_uc002dhn.1_Intron|ACSM1_uc010bwg.1_Silent_p.466_467GR>GR	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	466_467		ATP (By similarity).			benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TCATCACTCCTCCCCAGGAAAC	0.505													99	106					0	0	0.004672	0	0
DNAH3	55567	broad.mit.edu	37	16	20970706	20970706	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:20970706C>T	uc010vbe.1	-	54	10621	c.10621G>A	c.(10621-10623)GAT>AAT	p.D3541N	DNAH3_uc010vbd.1_Missense_Mutation_p.D976N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3541	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATACCAAGATCATCAGCAAAC	0.478													18	61					0	0	0.007413	0	0
HS3ST2	9956	broad.mit.edu	37	16	22826155	22826155	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:22826155C>T	uc002dli.2	+	1	296	c.224C>T	c.(223-225)CCC>CTC	p.P75L	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	75	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		CCCTGTGATCCCTCCGGGCCG	0.632													3	4					0	0	0.004672	0	0
PRKCB	5579	broad.mit.edu	37	16	24043504	24043504	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:24043504C>T	uc002dmd.2	+	4	533	c.336C>T	c.(334-336)CCC>CCT	p.P112P	PRKCB_uc002dme.2_Silent_p.P112P	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	112	Phorbol-ester/DAG-type 2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	ACTCCAGCCCCACGTTTTGTG	0.527													5	22					0	0	0.001168	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251409	25251409	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:25251409G>A	uc002dod.3	-	7	3039	c.2632C>T	c.(2632-2634)CGG>TGG	p.R878W	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.R674W	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	878	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		TGAACTCTCCGGTGGGCGCTG	0.453													23	31					0	0	0.004656	0	0
IL21R	50615	broad.mit.edu	37	16	27460566	27460566	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:27460566C>T	uc002doq.1	+	9	1812	c.1579C>T	c.(1579-1581)CCT>TCT	p.P527S	IL21R_uc002dor.1_Missense_Mutation_p.P527S|IL21R_uc002dos.1_Missense_Mutation_p.P527S|uc002dot.2_RNA	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	527	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GGTGGTCATTCCTCCGCCACT	0.647			T	BCL6	NHL								18	14					0	0	0.008871	0	0
SBK1	388228	broad.mit.edu	37	16	28331720	28331720	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:28331720C>T	uc002dpd.2	+	4	1542	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	251	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						CCGGCAACTTCCCGTGGGAGG	0.736													10	40					0	0	0.000978	0	0
APOB48R	55911	broad.mit.edu	37	16	28507730	28507730	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:28507730G>A	uc002dqb.1	+	3	1351	c.1341G>A	c.(1339-1341)GGG>GGA	p.G447G	uc010vct.1_Intron|APOB48R_uc010byg.1_5'UTR	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	447	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						AGGAGGCAGGGGAGAGCTTTG	0.627													24	24					0	0	0.003954	0	0
ITGAL	3683	broad.mit.edu	37	16	30507601	30507601	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:30507601C>T	uc002dyi.3	+	14	1863	c.1687C>T	c.(1687-1689)CCC>TCC	p.P563S	ITGAL_uc002dyj.3_Missense_Mutation_p.P480S|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	563	FG-GAP 6.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GGGGCTTAGTCCCCAGCCAAG	0.627													38	35					0	0	0.005524	0	0
ZNF768	79724	broad.mit.edu	37	16	30536451	30536451	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:30536451C>T	uc002dyk.3	-	2	1186	c.1010G>A	c.(1009-1011)CGC>CAC	p.R337H	ZNF768_uc010vex.1_Missense_Mutation_p.R306H|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.R306H	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	337	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						AGAGTGAGTGCGCTGGTGGCG	0.632													4	10					0	0	0.000248	0	0
ZNF768	79724	broad.mit.edu	37	16	30536502	30536502	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:30536502G>A	uc002dyk.3	-	2	1135	c.959C>T	c.(958-960)CCC>CTC	p.P320L	ZNF768_uc010vex.1_Missense_Mutation_p.P289L|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.P289L	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	320	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						GCCGCAACGGGGACATTTGTA	0.602													16	11					0	0	0.006122	0	0
ZNF688	146542	broad.mit.edu	37	16	30581590	30581590	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:30581590C>G	uc002dyt.2	-	3	1256	c.478G>C	c.(478-480)GAC>CAC	p.D160H	ZNF688_uc002dys.2_Missense_Mutation_p.D146H|uc002dyu.2_5'Flank	NM_145271	NP_660314	P0C7X2	ZN688_HUMAN	zinc finger protein 688 isoform a	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGGTCGGGTCCCAGGCAGCA	0.667													10	11					0	0	0.008291	0	0
CTF1	1489	broad.mit.edu	37	16	30910772	30910772	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:30910772C>T	uc002dzw.2	+	2	99	c.62C>T	c.(61-63)CCC>CTC	p.P21L	CTF1_uc002dzx.2_Missense_Mutation_p.P20L	NM_001330	NP_001321	Q16619	CTF1_HUMAN	cardiotrophin 1 isoform 1	21					cell proliferation|cell-cell signaling|muscle organ development|positive regulation of cell proliferation	extracellular space	cytokine activity|leukemia inhibitory factor receptor binding				0			Colorectal(24;0.198)			TCACTTCTTCCCCACTTGGAG	0.567													26	20					0	0	0.006320	0	0
ITGAX	3687	broad.mit.edu	37	16	31391661	31391661	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:31391661C>T	uc002ebu.1	+	27	3202	c.3135C>T	c.(3133-3135)TTC>TTT	p.F1045F	ITGAX_uc002ebt.2_Silent_p.F1045F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	1045	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGCTGGATTTCACCCTGAAGG	0.632													7	12					0	0	0.003080	0	0
AHSP	51327	broad.mit.edu	37	16	31539942	31539942	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:31539942C>T	uc002ecj.2	+	3	324	c.239C>T	c.(238-240)CCT>CTT	p.P80L		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	80					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						CTGGCCAACCCTTTCCTGGCC	0.582													12	19					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	16	32077447	32077447	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:32077447C>T	uc010vft.1	+	1		c.62C>T			uc010vfu.1_5'Flank					Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:aims0058h.																		CTGAGACTCTCCTGTGCAGCC	0.572													46	154					0	0	0.003610	0	0
ABCC11	85320	broad.mit.edu	37	16	48231937	48231937	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:48231937C>T	uc002eff.1	-	16	2609	c.2259G>A	c.(2257-2259)AAG>AAA	p.K753K	ABCC11_uc002efg.1_Silent_p.K753K|ABCC11_uc002efh.1_Silent_p.K753K|ABCC11_uc010vgk.1_Intron	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	753	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GACTTTCTACCTTTGGCTTCT	0.552									Cerumen_Type				24	27					0	0	0.003330	0	0
ZNF423	23090	broad.mit.edu	37	16	49670581	49670581	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:49670581C>T	uc002efs.2	-	5	2780	c.2482G>A	c.(2482-2484)GAG>AAG	p.E828K	ZNF423_uc010vgn.1_Missense_Mutation_p.E711K	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	828	C2H2-type 20.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CAGTGCTTCTCCCGCAGGTGC	0.572													12	14					0	0	0.001368	0	0
ZNF423	23090	broad.mit.edu	37	16	49671455	49671455	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:49671455G>A	uc002efs.2	-	5	1906	c.1608C>T	c.(1606-1608)ATC>ATT	p.I536I	ZNF423_uc010vgn.1_Silent_p.I419I	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	536	C2H2-type 12.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GGGCCTGCTGGATGTGCTCGG	0.582													22	24					0	0	0.002299	0	0
SALL1	6299	broad.mit.edu	37	16	51174110	51174110	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:51174110G>A	uc010vgs.1	-	2	2054	c.2023C>T	c.(2023-2025)CCT>TCT	p.P675S	SALL1_uc010vgr.1_Missense_Mutation_p.P578S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	675					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCCCCAAAAGGAAACTTGGCC	0.582													41	57					0	0	0.002222	0	0
SALL1	6299	broad.mit.edu	37	16	51175859	51175859	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:51175859C>T	uc010vgs.1	-	2	305	c.274G>A	c.(274-276)GAT>AAT	p.D92N	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	92					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCAGGATTATCAGGAGGGGGG	0.443													32	48					0	0	0.002445	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53653105	53653105	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:53653105G>A	uc002ehp.2	-	24	3512	c.3448C>T	c.(3448-3450)CGG>TGG	p.R1150W	RPGRIP1L_uc002eho.3_Missense_Mutation_p.R1070W|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.R1104W|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.R1116W|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.R1104W	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1150					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ATCTCAATCCGAATTTTTTCT	0.338													49	143					0	0	0.003610	0	0
CNGB1	1258	broad.mit.edu	37	16	57945663	57945663	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:57945663C>T	uc002emt.2	-	25	2551	c.2486G>A	c.(2485-2487)GGA>GAA	p.G829E	CNGB1_uc010cdh.2_Missense_Mutation_p.G823E	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	829	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TCACCTGTTTCCCACGCCATC	0.542													20	21					0	0	0.001882	0	0
CNGB1	1258	broad.mit.edu	37	16	57992359	57992359	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:57992359C>T	uc002emt.2	-	11	857	c.792G>A	c.(790-792)GAG>GAA	p.E264E	CNGB1_uc010cdh.2_Silent_p.E258E|CNGB1_uc002emu.2_Silent_p.E264E	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	264					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GCAAGGCCATCTCCAGCCTGT	0.622													16	28					0	0	0.006122	0	0
CNGB1	1258	broad.mit.edu	37	16	58001052	58001052	+	Missense_Mutation	SNP	C	T	T	rs78149232	by1000genomes	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:58001052C>T	uc002emt.2	-	2	204	c.139G>A	c.(139-141)GAG>AAG	p.E47K	CNGB1_uc010cdh.2_Missense_Mutation_p.E47K|CNGB1_uc002emu.2_Missense_Mutation_p.E47K	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	47	Glu-rich.				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GACTCTGTCTCGGCCTCCTCA	0.627													41	27					0	0	0.003610	0	0
CDH5	1003	broad.mit.edu	37	16	66436749	66436749	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:66436749C>T	uc002eom.3	+	12	2188	c.2032C>T	c.(2032-2034)CTG>TTG	p.L678L		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	678	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		gcggcccgcgcTGGACGCCCG	0.557													9	7					0	0	0.004482	0	0
EXOC3L	283849	broad.mit.edu	37	16	67221029	67221029	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:67221029C>T	uc002erx.1	-	6	1294	c.1053G>A	c.(1051-1053)ATG>ATA	p.M351I	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Missense_Mutation_p.M2I|EXOC3L_uc002ery.1_Missense_Mutation_p.M295I|EXOC3L_uc010vje.1_Missense_Mutation_p.M290I	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	351	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		CCAGGCTCCCCATCATTTCCT	0.607													6	38					0	0	0.001984	0	0
EDC4	23644	broad.mit.edu	37	16	67912701	67912701	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:67912701C>T	uc002eur.2	+	11	1412	c.1246C>T	c.(1246-1248)CTC>TTC	p.L416F	EDC4_uc010cer.2_Missense_Mutation_p.L35F|EDC4_uc010vkg.1_Missense_Mutation_p.L348F|EDC4_uc010ces.1_Missense_Mutation_p.L259F|EDC4_uc002eus.2_Missense_Mutation_p.L146F	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	416					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		TTGCTTGGACCTCTCAGCAGA	0.547													42	128					0	0	0.003610	0	0
CLEC18C	283971	broad.mit.edu	37	16	70219787	70219787	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:70219787G>A	uc002exy.2	+	12	1332	c.1212_splice	c.e12-1	p.G404_splice	CLEC18C_uc010vlt.1_Splice_Site_p.G404_splice|CLEC18C_uc002eyk.2_Splice_Site_p.G404_splice	NM_182619	NP_872425	Q8NCF0	CL18C_HUMAN	secretory protein LOC348174 precursor							extracellular region	sugar binding				0						ATGGCCTGCAGGTTTGGCAAC	0.592													15	25					0	0	0.001882	0	0
HYDIN	54768	broad.mit.edu	37	16	71127790	71127790	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:71127790G>A	uc002ezr.2	-	11	1504	c.1376C>T	c.(1375-1377)CCT>CTT	p.P459L	HYDIN_uc010cfz.1_Missense_Mutation_p.P204L|HYDIN_uc002ezv.2_Missense_Mutation_p.P459L|HYDIN_uc010vmc.1_Missense_Mutation_p.P476L|HYDIN_uc010vmd.1_Missense_Mutation_p.P486L|HYDIN_uc002ezw.3_Missense_Mutation_p.P476L	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	459										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTGAATCTTAGGTCCCATGCC	0.423													22	16					0	0	0.003330	0	0
TXNL4B	54957	broad.mit.edu	37	16	72120541	72120541	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:72120541T>C	uc002fca.2	-	4	756	c.445A>G	c.(445-447)ATT>GTT	p.I149V	TXNL4B_uc010cgl.2_Intron|TXNL4B_uc010vmn.1_Missense_Mutation_p.I149V|TXNL4B_uc010vmo.1_Missense_Mutation_p.I149V	NM_017853	NP_060323	Q9NX01	TXN4B_HUMAN	thioredoxin-like 4B	149					mitosis|mRNA processing|RNA splicing	spliceosomal complex				ovary(1)	1						ATGTACTAAATGTCTTGATAG	0.403													12	49					0	0	0.004990	0	0
ZFHX3	463	broad.mit.edu	37	16	72828864	72828864	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:72828864G>A	uc002fck.2	-	9	8390	c.7717C>T	c.(7717-7719)CCT>TCT	p.P2573S	ZFHX3_uc002fcl.2_Missense_Mutation_p.P1659S	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2573					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AGCATGAAAGGCATATCCAGG	0.557													11	37					0	0	0.001368	0	0
CLEC18B	497190	broad.mit.edu	37	16	74443540	74443540	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:74443540C>T	uc002fct.2	-	12	1439	c.1239_splice	c.e12-1	p.G413_splice	CLEC18B_uc002fcu.2_Splice_Site_p.G404_splice	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B							extracellular region	sugar binding				0						GTTGCCAAACCTGCAGGCCAG	0.602													7	63					0	0	0.003080	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76573629	76573629	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:76573629C>T	uc002feu.1	+	22	3619	c.3234C>T	c.(3232-3234)ATC>ATT	p.I1078I	CNTNAP4_uc002fev.1_Silent_p.I942I|CNTNAP4_uc010chb.1_Silent_p.I1005I|CNTNAP4_uc002fex.1_Silent_p.I1081I	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1078	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GTTTGCAGATCAGGTACAAGT	0.333													18	21					0	0	0.006122	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77359786	77359786	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:77359786C>T	uc002ffc.3	-	13	2428	c.2009G>A	c.(2008-2010)TGG>TAG	p.W670*	ADAMTS18_uc010chc.1_Nonsense_Mutation_p.W258*|ADAMTS18_uc002ffe.1_Nonsense_Mutation_p.W366*	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	670	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ATAGGGTTTCCACTGGTAGAA	0.378													15	33					0	0	0.008871	0	0
VAT1L	57687	broad.mit.edu	37	16	77896765	77896765	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:77896765G>A	uc002ffg.1	+	4	797	c.700G>A	c.(700-702)GAC>AAC	p.D234N		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	234							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						CAGAAATGCAGACTACGTGCA	0.443													26	70					0	0	0.003954	0	0
VAT1L	57687	broad.mit.edu	37	16	77918577	77918577	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:77918577T>C	uc002ffg.1	+	7	1052	c.955T>C	c.(955-957)TTA>CTA	p.L319L		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	319							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GTTTTCCCTTTTAAATCTGCT	0.507													11	10					0	0	0.008291	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064434	78064434	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:78064434C>A	uc002ffh.3	+	3	371	c.290C>A	c.(289-291)TCC>TAC	p.S97Y		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	97	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						GACTGCATTTCCAAAGGAGGA	0.473													27	33					8.24728e-16	1.13906e-15	0.004656	1	0
CDYL2	124359	broad.mit.edu	37	16	80654830	80654830	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:80654830G>A	uc002ffs.2	-	4	942	c.837C>T	c.(835-837)ATC>ATT	p.I279I		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	279						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CTTCTTTCATGATCTGCCGGC	0.582													4	5					0	0	0.000602	0	0
PKD1L2	114780	broad.mit.edu	37	16	81145855	81145855	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:81145855C>T	uc002fgh.1	-	42	6897	c.6897G>A	c.(6895-6897)ATG>ATA	p.M2299I	PKD1L2_uc002fgf.1_Missense_Mutation_p.M99I|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2299	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTGCCGTGATCATGTTCATTT	0.532													50	64					0	0	0.003610	0	0
BCMO1	53630	broad.mit.edu	37	16	81324033	81324033	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:81324033G>A	uc002fgn.1	+	11	1713	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	BCMO1_uc010vnp.1_Missense_Mutation_p.E430K	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	499					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						AAGCTTTACGGAATTGGCCCG	0.443													30	37					0	0	0.002096	0	0
PLCG2	5336	broad.mit.edu	37	16	81925159	81925159	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:81925159C>T	uc002fgt.2	+	11	1102	c.950C>T	c.(949-951)CCC>CTC	p.P317L	PLCG2_uc010chg.1_Missense_Mutation_p.P317L	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	317	PI-PLC X-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						ATGAACAACCCCCTGTCTCAT	0.512													12	9					0	0	0.000978	0	0
CDH13	1012	broad.mit.edu	37	16	83378478	83378478	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:83378478G>A	uc002fgx.2	+	6	768	c.648G>A	c.(646-648)GAG>GAA	p.E216E	CDH13_uc010vns.1_Silent_p.E263E|CDH13_uc010vnt.1_5'UTR|CDH13_uc010vnu.1_Silent_p.E177E	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	216	Cadherin 1.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TATTTGTGGAGACCACTGATG	0.423													29	37					0	0	0.002096	0	0
SLC38A8	146167	broad.mit.edu	37	16	84065481	84065481	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:84065481G>A	uc002fhg.1	-	4	623	c.623C>T	c.(622-624)CCT>CTT	p.P208L		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	208					amino acid transport|sodium ion transport	integral to membrane					0						CCTCAGTGAAGGATGGGACTC	0.627													7	56					0	0	0.004482	0	0
ATP2C2	9914	broad.mit.edu	37	16	84474517	84474517	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:84474517G>A	uc002fhx.2	+	14	1353	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K	ATP2C2_uc010chj.2_Missense_Mutation_p.E422K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E439K|ATP2C2_uc002fhz.2_Missense_Mutation_p.E271K	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	422	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						ACCATCCAAGGAAGTCATTAA	0.458													7	41					0	0	0.000978	0	0
FOXC2	2303	broad.mit.edu	37	16	86602418	86602418	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:86602418C>T	uc002fjq.2	+	1	1562	c.1477C>T	c.(1477-1479)CCC>TCC	p.P493S		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	493					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						CCACGCAGCCCCCTACTCCTA	0.647									Late-onset_Hereditary_Lymphedema				9	12					0	0	0.006214	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87445384	87445384	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:87445384G>A	uc002fjz.1	-	12	2559	c.2532C>T	c.(2530-2532)GGC>GGT	p.G844G	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Silent_p.G620G	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	844					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GGAAGGTGGAGCCGCCGCCGT	0.657													12	7					0	0	0.000978	0	0
CHMP1A	5119	broad.mit.edu	37	16	89715875	89715875	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr16:89715875G>A	uc002fnu.2	-	4	269	c.136C>T	c.(136-138)CGT>TGT	p.R46C	CHMP1A_uc002fnt.2_5'Flank|CHMP1A_uc002fnv.2_Missense_Mutation_p.P39L	NM_002768	NP_002759	Q9HD42	CHM1A_HUMAN	chromatin modifying protein 1A isoform 2	46	Potential.				cell division|gene silencing|mitotic chromosome condensation|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription by glucose|protein transport|transcription, DNA-dependent|vesicle-mediated transport	condensed nuclear chromosome|early endosome|endomembrane system|endosome membrane|microtubule organizing center|nuclear matrix	metallopeptidase activity|protein domain specific binding|zinc ion binding				0		all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.048)		GCATACACACGGGCACACTCT	0.592													7	17					0	0	0.001984	0	0
CRK	1398	broad.mit.edu	37	17	1340235	1340235	+	Silent	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:1340235G>C	uc002fsl.2	-	2	589	c.456C>G	c.(454-456)CCC>CCG	p.P152P	CRK_uc002fsm.2_Silent_p.P152P	NM_016823	NP_058431	P46108	CRK_HUMAN	v-crk sarcoma virus CT10 oncogene homolog	152	SH3 1.				actin cytoskeleton organization|activation of MAPKK activity|blood coagulation|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of transcription from RNA polymerase II promoter	cytosol|endosome|nucleus|plasma membrane	protein binding|SH2 domain binding			lung(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (25;0.083)		CTTTCTTAAAGGGAAGATCTT	0.522													23	61					0	0	0.002299	0	0
WDR81	124997	broad.mit.edu	37	17	1636905	1636905	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:1636905G>A	uc002fti.2	+	7	1154	c.893G>A	c.(892-894)AGT>AAT	p.S298N	WDR81_uc002fth.2_Missense_Mutation_p.S474N|WDR81_uc010vqp.1_Missense_Mutation_p.S322N|WDR81_uc002ftj.2_Missense_Mutation_p.S1525N|WDR81_uc010vqq.1_Missense_Mutation_p.S156N	NM_001163811	NP_001157283	Q562E7	WDR81_HUMAN	WD repeat domain 81 isoform 4	298										skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AGCCCCAGCAGTCGCAACCCT	0.662													27	20					0	0	0.004656	0	0
PLD2	5338	broad.mit.edu	37	17	4725982	4725982	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:4725982C>T	uc002fzc.2	+	25	2726	c.2625C>T	c.(2623-2625)CTC>CTT	p.L875L	PLD2_uc002fzd.2_Silent_p.L864L	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	875					cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	TGCGGACTCTCCGGGAGTACG	0.657													27	17					0	0	0.002445	0	0
RABEP1	9135	broad.mit.edu	37	17	5212104	5212104	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:5212104T>C	uc002gbm.3	+	2	374	c.150T>C	c.(148-150)TAT>TAC	p.Y50Y	RABEP1_uc010clc.1_Silent_p.Y50Y|RABEP1_uc010cld.1_Intron|RABEP1_uc010vsw.1_Intron|RABEP1_uc002gbl.3_Silent_p.Y50Y|RABEP1_uc002gbj.2_Silent_p.Y50Y|RABEP1_uc002gbk.2_Silent_p.Y50Y	NM_004703	NP_004694	Q15276	RABE1_HUMAN	rabaptin, RAB GTPase binding effector protein 1	50	Potential.				apoptosis|cellular membrane fusion|endocytosis|protein transport	centrosome|early endosome|endocytic vesicle|recycling endosome	growth factor activity|GTPase activator activity|protein homodimerization activity			large_intestine(1)|ovary(1)	2						AGGAGTTATATTTGGCTAAAG	0.343													25	12					0	0	0.001786	0	0
KIAA0753	9851	broad.mit.edu	37	17	6531816	6531816	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:6531816A>G	uc002gde.3	-	3	698	c.339T>C	c.(337-339)TTT>TTC	p.F113F	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	113						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		TATGTTTTTCAAATTGTCTTC	0.428													21	14					0	0	0.001882	0	0
TMEM95	339168	broad.mit.edu	37	17	7258682	7258682	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:7258682C>T	uc002ggh.1	+	1	186	c.159C>T	c.(157-159)GCC>GCT	p.A53A	TMEM95_uc002ggf.1_Silent_p.A53A|TMEM95_uc002ggg.1_Silent_p.A53A	NM_198154	NP_937797	Q3KNT9	TMM95_HUMAN	transmembrane protein 95	53	Extracellular (Potential).					integral to membrane					0		Prostate(122;0.173)				ACTTCTCGGCCTTTGCCTTAG	0.647													17	17					0	0	0.007413	0	0
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	T	T	rs121912660		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:7577099C>T	uc002gim.2	-	8	1033	c.839G>A	c.(838-840)AGA>AAA	p.R280K	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R280K|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R148K|TP53_uc010cng.1_Missense_Mutation_p.R148K|TP53_uc002gii.1_Missense_Mutation_p.R148K|TP53_uc010cnh.1_Missense_Mutation_p.R280K|TP53_uc010cni.1_Missense_Mutation_p.R280K|TP53_uc002gij.2_Missense_Mutation_p.R280K	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	280	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> T (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> K (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in a sporadic cancer; somatic mutation).|R -> I (in sporadic cancers; somatic mutation).|R -> S (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R280T(53)|p.R280K(41)|p.R280G(18)|p.R280S(13)|p.R280I(12)|p.R280*(8)|p.R280fs*65(7)|p.0?(7)|p.R280R(3)|p.?(2)|p.R280_D281delRD(2)|p.A276_R283delACPGRDRR(1)|p.A276fs*64(1)|p.G279_R280delGR(1)|p.R280fs*62(1)|p.S269fs*21(1)|p.G279fs*59(1)|p.F270_D281del12(1)|p.C275_R283delCACPGRDRR(1)|p.L265_K305del41(1)|p.D281fs*24(1)|p.V272_K292del21(1)|p.C275fs*20(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCGCCGGTCTCTCCCAGGACA	0.542		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			20	10					0	0	0.001523	0	0
DNAH2	146754	broad.mit.edu	37	17	7680857	7680857	+	Missense_Mutation	SNP	C	T	T	rs140523857		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:7680857C>T	uc002giu.1	+	32	5166	c.5152C>T	c.(5152-5154)CAT>TAT	p.H1718Y		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1718	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.H1718Y(1)		ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GATAGAAATTCATGCCCGGGA	0.488													154	94					0	0	0.003610	0	0
KDM6B	23135	broad.mit.edu	37	17	7750516	7750516	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:7750516C>T	uc002giw.1	+	10	1379	c.1003C>T	c.(1003-1005)CCA>TCA	p.P335S	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	335	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						GGCTGCTCCCCCAGGCCCAGG	0.692													29	16					0	0	0.002445	0	0
GUCY2D	3000	broad.mit.edu	37	17	7916452	7916452	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:7916452G>A	uc002gjt.2	+	11	2219	c.2145G>A	c.(2143-2145)AGG>AGA	p.R715R		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	715	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				AGCTGCTTAGGGACCCAGCCC	0.647													13	4					0	0	0.002450	0	0
WDR16	146845	broad.mit.edu	37	17	9546490	9546490	+	Missense_Mutation	SNP	G	A	A	rs138429217		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:9546490G>A	uc002gly.2	+	14	1907	c.1838G>A	c.(1837-1839)CGA>CAA	p.R613Q	USP43_uc002gma.3_5'Flank|USP43_uc010cod.2_5'Flank|USP43_uc010vva.1_5'Flank|WDR16_uc002glz.2_Missense_Mutation_p.R545Q|WDR16_uc010coc.2_Missense_Mutation_p.R623Q	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	613	WD 11.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GCCATTTTGCGATGGAAGTAC	0.478													32	27					0	0	0.003271	0	0
USP43	124739	broad.mit.edu	37	17	9615323	9615323	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:9615323C>T	uc010cod.2	+	14	2209	c.2209C>T	c.(2209-2211)CGG>TGG	p.R737W	USP43_uc002gma.3_Missense_Mutation_p.R426W|USP43_uc010vva.1_Missense_Mutation_p.R732W|USP43_uc010coe.2_Missense_Mutation_p.R534W|USP43_uc002gmc.3_Missense_Mutation_p.R249W	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	737					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CTGGCTCTTACGGCTCGGGAG	0.632													12	6					0	0	0.004007	0	0
USP43	124739	broad.mit.edu	37	17	9631771	9631771	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:9631771C>T	uc010cod.2	+	15	2836	c.2836C>T	c.(2836-2838)CGA>TGA	p.R946*	USP43_uc002gma.3_Nonsense_Mutation_p.R635*|USP43_uc010vva.1_Nonsense_Mutation_p.R941*|USP43_uc010coe.2_Nonsense_Mutation_p.R743*|USP43_uc002gmc.3_Nonsense_Mutation_p.R458*	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	946					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GAAACCAGCTCGACCGGAGGG	0.527													5	6					0	0	0.000602	0	0
DHRS7C	201140	broad.mit.edu	37	17	9680597	9680597	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:9680597G>A	uc010vvb.1	-	4	487	c.487C>T	c.(487-489)CTT>TTT	p.L163F	DHRS7C_uc010cof.2_Missense_Mutation_p.L162F	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	163						extracellular region	binding|oxidoreductase activity				0						ATGTTGGGAAGCAGGGCTGGA	0.507													13	4					0	0	0.002450	0	0
MYH13	8735	broad.mit.edu	37	17	10235437	10235437	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:10235437C>T	uc002gmk.1	-	20	2367	c.2277G>A	c.(2275-2277)CAG>CAA	p.Q759Q		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	759	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CGAACCTGAACTGCTCCCGGT	0.552													16	11					0	0	0.004007	0	0
MYH8	4626	broad.mit.edu	37	17	10315965	10315965	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:10315965C>T	uc002gmm.2	-	13	1323	c.1228G>A	c.(1228-1230)GGC>AGC	p.G410S	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	410	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TACTCATTGCCAACCTTGACC	0.502									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				72	49					0	0	0.003610	0	0
MYH2	4620	broad.mit.edu	37	17	10427974	10427974	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:10427974G>A	uc010coi.2	-	35	5112	c.4984C>T	c.(4984-4986)CAC>TAC	p.H1662Y	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.H1662Y|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1662	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCATCCAGGTGGATCTGGGTA	0.552													21	17					0	0	0.001523	0	0
MYH2	4620	broad.mit.edu	37	17	10446465	10446465	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:10446465C>T	uc010coi.2	-	9	883	c.755G>A	c.(754-756)AGA>AAA	p.R252K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R252K|MYH2_uc010coj.2_Missense_Mutation_p.R252K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	252	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AAAGTGGATTCTGATGAATTT	0.284													53	43					0	0	0.003610	0	0
SCO1	6341	broad.mit.edu	37	17	10596221	10596221	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:10596221G>A	uc002gmr.3	-	3	483	c.422C>T	c.(421-423)TCC>TTC	p.S141F	SCO1_uc002gms.3_Missense_Mutation_p.S141F	NM_004589	NP_004580	O75880	SCO1_HUMAN	cytochrome oxidase deficient homolog 1	141					cellular copper ion homeostasis|copper ion transport|generation of precursor metabolites and energy|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0						AGTTGTGAGGGAAAACGGTCC	0.443													22	7					0	0	0.005443	0	0
DNAH9	1770	broad.mit.edu	37	17	11833300	11833300	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:11833300G>A	uc002gne.2	+	63	12063	c.11995G>A	c.(11995-11997)GAG>AAG	p.E3999K	DNAH9_uc010coo.2_Intron|DNAH9_uc002gnf.2_Missense_Mutation_p.E311K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3999	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACCCTCCCCTGAGGGCCACAT	0.592													12	5					0	0	0.002450	0	0
RICH2	9912	broad.mit.edu	37	17	12832321	12832321	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:12832321G>A	uc002gnr.3	+	7	867	c.540G>A	c.(538-540)AGG>AGA	p.R180R	RICH2_uc010vvk.1_Silent_p.R180R|RICH2_uc010vvl.1_Silent_p.R180R|RICH2_uc002gns.3_Intron|RICH2_uc010vvm.1_Silent_p.R180R|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	180	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						ATGCCCTCAGGGAAGAAATGG	0.552													4	3					0	0	0.000248	0	0
ADORA2B	136	broad.mit.edu	37	17	15878080	15878080	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:15878080C>A	uc002gpd.1	+	2	755	c.423C>A	c.(421-423)TTC>TTA	p.F141L		NM_000676	NP_000667	P29275	AA2BR_HUMAN	adenosine A2b receptor	141	Helical; Name=4; (By similarity).				activation of MAPK activity|cellular defense response|excretion|JNK cascade	integral to plasma membrane				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0855)	Defibrotide(DB04932)|Enprofylline(DB00824)|Pegademase bovine(DB00061)|Theophylline(DB00277)	TGACTCCATTCCTGGGGTGGA	0.502													30	15					5.45727e-16	7.54116e-16	0.008361	1	0
NCOR1	9611	broad.mit.edu	37	17	15983350	15983350	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:15983350A>G	uc002gpo.2	-	26	3669	c.3429T>C	c.(3427-3429)AGT>AGC	p.S1143S	NCOR1_uc002gpn.2_Silent_p.S1159S|NCOR1_uc002gpp.1_Silent_p.S1050S|NCOR1_uc010vwb.1_5'UTR|NCOR1_uc010coy.2_Silent_p.S51S|NCOR1_uc010vwc.1_5'UTR	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1143	Interaction with ETO.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		CCCGAGTTATACTTCCTTCTT	0.463													27	20					0	0	0.002445	0	0
ZNF287	57336	broad.mit.edu	37	17	16455369	16455369	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:16455369C>T	uc002gqi.2	-	6	2540	c.2087G>A	c.(2086-2088)AGA>AAA	p.R696K		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	689	C2H2-type 12.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		AGTATGAGTTCTCTGATGTTG	0.368													27	15					0	0	0.005443	0	0
LOC162632	162632	broad.mit.edu	37	17	16703556	16703556	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:16703556G>A	uc010cpj.1	+	19		c.4667G>A			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						TTGGCCAATGGATTCCTTTAT	0.527													17	12					0	0	0.007413	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16852154	16852154	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:16852154G>A	uc002gqs.1	-	3	356	c.343C>T	c.(343-345)CCA>TCA	p.P115S	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_Missense_Mutation_p.P69S|TNFRSF13B_uc010vwu.1_Missense_Mutation_p.P115S	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	115	Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						AGCTCTGGTGGAAGGTTCACT	0.527									IgA_Deficiency_Selective				62	32					0	0	0.003610	0	0
MYO15A	51168	broad.mit.edu	37	17	18055172	18055172	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:18055172G>A	uc010vxh.1	+	40	8138	c.7800G>A	c.(7798-7800)GGG>GGA	p.G2600G	MYO15A_uc010vxi.1_5'Flank|MYO15A_uc010vxj.1_5'Flank|MYO15A_uc010vxk.1_5'Flank	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2600	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGGATGGCGGGAAAGTGTTCA	0.567													5	1					0	0	0.001984	0	0
FBXW10	10517	broad.mit.edu	37	17	18675803	18675803	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:18675803G>A	uc002guk.2	+	12	2317	c.2085G>A	c.(2083-2085)ACG>ACA	p.T695T	FBXW10_uc002guj.2_Silent_p.T695T|FBXW10_uc002gul.2_Silent_p.T724T|FBXW10_uc010cqh.1_Silent_p.T642T	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	695	Potential.									ovary(1)	1						Tggaaaaaacgaaacaaaaga	0.323													69	37					0	0	0.003610	0	0
CCDC144C	348254	broad.mit.edu	37	17	20242896	20242896	+	RNA	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:20242896A>G	uc010cqy.1	+	5		c.985A>G				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						ATGCGGATTGAACAAGGCAAA	0.358													29	25					0	0	0.001786	0	0
LGALS9B	284194	broad.mit.edu	37	17	20355177	20355177	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:20355177G>A	uc002gxa.1	-	9	757	c.692C>T	c.(691-693)ACC>ATC	p.T231I	LGALS9B_uc002gwz.1_Missense_Mutation_p.T230I|LGALS9B_uc010vzh.1_Missense_Mutation_p.T143I	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	231	Galectin 2.						sugar binding			skin(1)	1						TCCCGGAATGGTGGTGATGAA	0.587													7	5					0	0	0.006214	0	0
SARM1	23098	broad.mit.edu	37	17	26711585	26711585	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:26711585C>T	uc010crl.1	+	6	1366	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	SARM1_uc010waj.1_RNA|SARM1_uc002hbe.1_5'Flank	NM_015077	NP_055892	Q6SZW1	SARM1_HUMAN	sterile alpha and TIR motif containing 1	433	SAM 1.				innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GCGAGAGCTTCCGGGTAGAGT	0.682													5	2					0	0	0.000602	0	0
PIGS	94005	broad.mit.edu	37	17	26887112	26887112	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:26887112G>A	uc002hbo.2	-	7	1147	c.774C>T	c.(772-774)TTC>TTT	p.F258F	PIGS_uc002hbn.2_Silent_p.F250F|PIGS_uc010wap.1_Silent_p.F197F	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	258	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					GGGCATTCAGGAAAGGTTGCA	0.512													22	21					0	0	0.001882	0	0
NEK8	284086	broad.mit.edu	37	17	27064839	27064839	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:27064839A>T	uc002hcp.2	+	7	892	c.892A>T	c.(892-894)ATC>TTC	p.I298F		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	298						cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					ACCTGCAGGTATCCCCCGGGG	0.617													37	31					0	0	0.002852	0	0
ZNF830	91603	broad.mit.edu	37	17	33289302	33289302	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:33289302A>T	uc002hih.3	+	1	754	c.717A>T	c.(715-717)AGA>AGT	p.R239S	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	239					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				TGGAAAGGAGAGAAAACACCG	0.438													7	8					0	0	0.003080	0	0
RAD51L3	5892	broad.mit.edu	37	17	33446572	33446572	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:33446572T>C	uc002hir.2	-	1	317	c.61A>G	c.(61-63)AGG>GGG	p.R21G	RFFL_uc002hiq.2_Intron|RAD51L3_uc010wcd.1_Missense_Mutation_p.R21G|RAD51L3_uc002his.2_Missense_Mutation_p.R21G|RAD51L3_uc010ctk.2_5'UTR|RAD51L3_uc010wce.1_5'UTR|RAD51L3_uc002hit.2_5'UTR|RAD51L3_uc002hiu.2_5'UTR|RAD51L3_uc010wcf.1_Intron|RAD51L3_uc002hiw.1_5'Flank|RAD51L3_uc002hiv.1_5'Flank|RAD51L3_uc010ctl.1_5'Flank|RAD51L3_uc010ctm.1_5'Flank|FNDC8_uc002hix.2_5'Flank	NM_002878	NP_002869	O75771	RA51D_HUMAN	RAD51-like 3 isoform 1	21					DNA repair|reciprocal meiotic recombination	nucleus	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		CTGTGGCTCCTGAGAAGCTGG	0.697								Direct_reversal_of_damage|Homologous_recombination					3	52					0	0	0.004672	0	0
UNC45B	146862	broad.mit.edu	37	17	33479972	33479972	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:33479972G>A	uc002hja.2	+	5	539	c.442G>A	c.(442-444)GAA>AAA	p.E148K	UNC45B_uc002hjb.2_Missense_Mutation_p.E148K|UNC45B_uc002hjc.2_Missense_Mutation_p.E148K|UNC45B_uc010cto.2_Missense_Mutation_p.E148K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	148					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CCTCTTGGATGAAAACAGTGA	0.572													60	24					0	0	0.003610	0	0
SLFN12	55106	broad.mit.edu	37	17	33749255	33749255	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:33749255C>T	uc002hji.3	-	2	1170	c.793G>A	c.(793-795)GAA>AAA	p.E265K	SLFN12_uc002hjj.3_Missense_Mutation_p.E265K|SLFN12_uc010cts.2_Missense_Mutation_p.E265K	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	265							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ATGGACTTTTCGATTTCTCTT	0.343													30	26					0	0	0.002445	0	0
MYO19	80179	broad.mit.edu	37	17	34863697	34863697	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:34863697T>C	uc010wcy.1	-	16	2290	c.1298A>G	c.(1297-1299)TAC>TGC	p.Y433C	MYO19_uc002hmw.2_Missense_Mutation_p.Y433C|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	433	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CTCATTGGCGTAGTTGATGCA	0.532													4	10					0	0	0.000602	0	0
ACACA	31	broad.mit.edu	37	17	35536296	35536296	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:35536296G>A	uc002hnm.2	-	41	5064	c.4873C>T	c.(4873-4875)CCC>TCC	p.P1625S	ACACA_uc002hnk.2_Missense_Mutation_p.P1547S|ACACA_uc002hnl.2_Missense_Mutation_p.P1567S|ACACA_uc002hnn.2_Missense_Mutation_p.P1625S|ACACA_uc002hno.2_Missense_Mutation_p.P1662S|ACACA_uc010cuy.2_Intron	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1625					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GGCAGAGGGGGAGATGGAAGA	0.448													6	11					0	0	0.001168	0	0
ACACA	31	broad.mit.edu	37	17	35615257	35615257	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:35615257G>A	uc002hnm.2	-	13	1619	c.1428C>T	c.(1426-1428)ATC>ATT	p.I476I	ACACA_uc002hnk.2_Silent_p.I398I|ACACA_uc002hnl.2_Silent_p.I418I|ACACA_uc002hnn.2_Silent_p.I476I|ACACA_uc002hno.2_Silent_p.I513I|ACACA_uc010cuz.2_Silent_p.I476I	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	476	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	ACATCATACGGATATCCTTGA	0.418													37	13					0	0	0.005524	0	0
PIP4K2B	8396	broad.mit.edu	37	17	36926734	36926734	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:36926734A>C	uc002hqs.2	-	9	1606	c.1125T>G	c.(1123-1125)GAT>GAG	p.D375E	PIP4K2B_uc010cvp.2_5'Flank	NM_003559	NP_003550	P78356	PI42B_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	375	PIPK.				cell surface receptor linked signaling pathway	endoplasmic reticulum membrane|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|receptor signaling protein activity			ovary(1)	1						TCTTCTTTGTATCGTATGGCG	0.537													4	152					0	0	0.001168	0	0
NEUROD2	4761	broad.mit.edu	37	17	37762629	37762630	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:37762629_37762630TC>GT	uc002hry.2	-	2	423_424	c.223_224GA>AC	c.(223-225)GAG>ACG	p.E75T		NM_006160	NP_006151	Q15784	NDF2_HUMAN	neurogenic differentiation 2	75					cellular response to calcium ion|cellular response to electrical stimulus|cerebellar cortex development|negative regulation of synapse maturation|positive regulation of calcium-mediated signaling|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of synapse maturation|positive regulation of synaptic plasticity|protein ubiquitination|regulation of transcription from RNA polymerase II promoter	nucleus	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Lung(15;0.00549)|LUAD - Lung adenocarcinoma(14;0.0664)			ctcgccttcctcctTGACCTCG	0.554													6	0					0	0	0.004672	0	0
GSDMB	55876	broad.mit.edu	37	17	38063221	38063221	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:38063221G>A	uc010cwj.2	-	6	725	c.720C>T	c.(718-720)TCC>TCT	p.S240S	GSDMB_uc010cwi.2_Intron|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_Intron|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Intron|GSDMB_uc002hth.2_Silent_p.S227S|GSDMB_uc010wem.1_Intron	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						cytoplasm				breast(1)|pancreas(1)	2						TACCTAAACAGGATGAAGCAC	0.522													30	55					0	0	0.003755	0	0
WIPF2	147179	broad.mit.edu	37	17	38420841	38420841	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:38420841C>T	uc002hug.1	+	5	653	c.413C>T	c.(412-414)ACA>ATA	p.T138I	WIPF2_uc002huh.1_5'UTR|WIPF2_uc010cww.1_5'UTR|WIPF2_uc002hui.1_Missense_Mutation_p.T138I|WIPF2_uc010cwx.1_Intron|WIPF2_uc010cwy.1_Missense_Mutation_p.T138I	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	138						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						CAGGATGATACAGACAGCAGC	0.612										HNSCC(43;0.11)			39	98					0	0	0.005524	0	0
KRT12	3859	broad.mit.edu	37	17	39017914	39017914	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:39017914T>C	uc002hvk.2	-	8	1508	c.1484A>G	c.(1483-1485)TAA>TGA	p.*495*		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	495					visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TGTGAAATTTTACATTAGTTC	0.378													64	11					0	0	0.003610	0	0
KRTAP3-3	85293	broad.mit.edu	37	17	39150178	39150178	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:39150178G>A	uc002hvr.1	-	1	208	c.172C>T	c.(172-174)CCT>TCT	p.P58S		NM_033185	NP_149441	Q9BYR6	KRA33_HUMAN	keratin associated protein 3-3	58	3 X 5 AA repeats of C-C-X(3).					keratin filament	structural molecule activity				0		Breast(137;0.00043)				CAGGGCTGAGGAATGTGGCAG	0.622													50	13					0	0	0.003610	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	T	T	rs425487	by1000genomes	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:39274415C>T	uc002hvz.2	-	1	192	c.153G>A	c.(151-153)AGG>AGA	p.R51R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	51	6.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGCCTGCAGCAGC	0.667													4	58					0	0	0.001984	0	0
KRT31	3881	broad.mit.edu	37	17	39552713	39552713	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:39552713G>A	uc002hwn.2	-	3	600	c.547C>T	c.(547-549)CTG>TTG	p.L183L	KRT31_uc010cxn.2_Silent_p.L183L	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	183	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				TCCTCCTTCAGGGACTCCACC	0.582													31	8					0	0	0.003271	0	0
KRT16	3868	broad.mit.edu	37	17	39768825	39768825	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:39768825G>A	uc002hxg.3	-	1	255	c.116C>T	c.(115-117)TCC>TTC	p.S39F	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	39	Head.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GGCACGGCAGGACCCTCCGGC	0.721													13	3					0	0	0.001855	0	0
DNAJC7	7266	broad.mit.edu	37	17	40146939	40146939	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:40146939C>G	uc002hyo.2	-	5	666	c.429G>C	c.(427-429)ATG>ATC	p.M143I	DNAJC7_uc010cxu.2_Missense_Mutation_p.M87I|DNAJC7_uc010cxv.2_Missense_Mutation_p.M87I|DNAJC7_uc010wgb.1_Missense_Mutation_p.M87I|DNAJC7_uc010wgc.1_Missense_Mutation_p.M1I|DNAJC7_uc002hyp.2_Missense_Mutation_p.M87I|DNAJC7_uc010cxw.2_RNA	NM_003315	NP_003306	Q99615	DNJC7_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 7	143	TPR 4.				chaperone cofactor-dependent protein refolding	cytoplasm|cytoskeleton|nucleus	heat shock protein binding|unfolded protein binding			ovary(1)	1		all_cancers(22;0.00273)|Breast(137;0.00104)|all_epithelial(22;0.0305)				TCTCATATTCCATGACTGCAT	0.363													3	97					0	0	0.000248	0	0
KCNH4	23415	broad.mit.edu	37	17	40312181	40312181	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:40312181G>A	uc002hzb.2	-	16	3264	c.2931C>T	c.(2929-2931)TCC>TCT	p.S977S		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	977	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GGGGCAATATGGAAGGTCTCA	0.612													59	12					0	0	0.003610	0	0
MEOX1	4222	broad.mit.edu	37	17	41719337	41719337	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:41719337A>T	uc002idz.2	-	3	735	c.706T>A	c.(706-708)TCC>ACC	p.S236T	MEOX1_uc002iea.2_Missense_Mutation_p.L178H|MEOX1_uc002ieb.2_Missense_Mutation_p.S121T	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	236						nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		CCATTGGGGGAGATGGGCTGA	0.567													59	86					0	0	0.003610	0	0
SLC25A39	51629	broad.mit.edu	37	17	42397640	42397640	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:42397640G>A	uc002ign.2	-	11	1042	c.888C>T	c.(886-888)AAC>AAT	p.N296N	SLC25A39_uc002igm.2_Silent_p.N288N|SLC25A39_uc002igo.2_Silent_p.N288N|SLC25A39_uc010wiw.1_Silent_p.N273N|SLC25A39_uc010czu.2_Silent_p.N164N	NM_001143780	NP_001137252	Q9BZJ4	S2539_HUMAN	solute carrier family 25, member 39 isoform a	296	Solcar 3.				heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane				upper_aerodigestive_tract(1)	1		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		CATGCAGGGGGTTCACTGCAA	0.657													37	7					0	0	0.005524	0	0
ADAM11	4185	broad.mit.edu	37	17	42847128	42847128	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:42847128A>C	uc002ihh.2	+	3	280	c.280A>C	c.(280-282)AAC>CAC	p.N94H	ADAM11_uc010wjd.1_5'UTR	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	94					integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				CCCAGCCTTCAACTCAAACTT	0.637													53	70					0	0	0.003610	0	0
C17orf57	124989	broad.mit.edu	37	17	45479563	45479563	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:45479563T>C	uc002iln.2	+	18	2422	c.2011T>C	c.(2011-2013)TTA>CTA	p.L671L	C17orf57_uc002ilm.2_Silent_p.L575L	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	671							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						TGCTGCCAGGTTAGAAGGTAA	0.323													42	8					0	0	0.003610	0	0
SP6	80320	broad.mit.edu	37	17	45925172	45925172	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:45925172C>T	uc002img.1	-	2	956	c.624G>A	c.(622-624)GGG>GGA	p.G208G	SP6_uc002imh.1_Silent_p.G208G	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GACGCGCCGCCCCGTCCAGGC	0.716													11	13					0	0	0.002450	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48222486	48222486	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:48222486A>T	uc002iqh.3	-	4	1499	c.1496T>A	c.(1495-1497)CTG>CAG	p.L499Q		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	497	Interacts with RGS2 (By similarity).|PDZ.				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						ACCCTTCTCCAGCTCCACAGG	0.622													13	24					0	0	0.001368	0	0
CACNA1G	8913	broad.mit.edu	37	17	48674270	48674270	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:48674270G>A	uc002irk.1	+	16	3616	c.3244G>A	c.(3244-3246)GAG>AAG	p.E1082K	CACNA1G_uc002iri.1_Missense_Mutation_p.E1082K|CACNA1G_uc002irj.1_Missense_Mutation_p.E1059K|CACNA1G_uc002irl.1_Missense_Mutation_p.E1059K|CACNA1G_uc002irm.1_Missense_Mutation_p.E1059K|CACNA1G_uc002irn.1_Missense_Mutation_p.E1059K|CACNA1G_uc002iro.1_Missense_Mutation_p.E1059K|CACNA1G_uc002irp.1_Missense_Mutation_p.E1082K|CACNA1G_uc002irq.1_Missense_Mutation_p.E1059K|CACNA1G_uc002irr.1_Missense_Mutation_p.E1082K|CACNA1G_uc002irs.1_Missense_Mutation_p.E1082K|CACNA1G_uc002irt.1_Missense_Mutation_p.E1082K|CACNA1G_uc002irv.1_Missense_Mutation_p.E1082K|CACNA1G_uc002irw.1_Missense_Mutation_p.E1059K|CACNA1G_uc002iru.1_Missense_Mutation_p.E1059K|CACNA1G_uc002irx.1_Missense_Mutation_p.E995K|CACNA1G_uc002iry.1_Missense_Mutation_p.E995K|CACNA1G_uc002irz.1_Missense_Mutation_p.E995K|CACNA1G_uc002isa.1_Missense_Mutation_p.E995K|CACNA1G_uc002isb.1_Missense_Mutation_p.E995K|CACNA1G_uc002isc.1_Missense_Mutation_p.E995K|CACNA1G_uc002isd.1_Missense_Mutation_p.E995K|CACNA1G_uc002ise.1_Missense_Mutation_p.E995K|CACNA1G_uc002isf.1_Missense_Mutation_p.E995K|CACNA1G_uc002isg.1_Missense_Mutation_p.E995K|CACNA1G_uc002ish.1_Missense_Mutation_p.E995K|CACNA1G_uc002isi.1_Missense_Mutation_p.E972K|CACNA1G_uc002isj.2_5'Flank	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1082	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GGCGGCCCACGAGATGAAGTC	0.682													5	0					0	0	0.001168	0	0
ANKFN1	162282	broad.mit.edu	37	17	54526526	54526526	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:54526526C>T	uc002iun.1	+	10	1230	c.1195C>T	c.(1195-1197)CAT>TAT	p.H399Y		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	399										large_intestine(1)|ovary(1)	2						CCGAGCCCTTCATCAGCATTA	0.502													77	22					0	0	0.003610	0	0
DGKE	8526	broad.mit.edu	37	17	54912461	54912461	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:54912461C>T	uc002iur.2	+	2	485	c.305C>T	c.(304-306)GCC>GTC	p.A102V	DGKE_uc002ius.1_Missense_Mutation_p.A102V|C17orf67_uc002iuq.2_5'Flank	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	102	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					CTCAGGAAGGCCGACAAGCGC	0.647													39	9					0	0	0.005524	0	0
CLTC	1213	broad.mit.edu	37	17	57758286	57758286	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:57758286C>T	uc002ixq.1	+	19	3376	c.2933C>T	c.(2932-2934)GCT>GTT	p.A978V	CLTC_uc002ixp.2_Missense_Mutation_p.A978V|CLTC_uc002ixr.1_Missense_Mutation_p.A982V	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	978	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GTACAAACAGCTTTGTCTGAG	0.388			T	ALK|TFE3	ALCL|renal 								64	25					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	58511075	58511075	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:58511075C>T	uc002iyr.1	-	1		c.2283G>A								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		GAAATATTTTCCTTTGTGCTT	0.303													22	2					0	0	0.001882	0	0
TANC2	26115	broad.mit.edu	37	17	61499168	61499168	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:61499168C>T	uc002jal.3	+	25	5848	c.5825C>T	c.(5824-5826)TCC>TTC	p.S1942F	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.S1053F	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1942							binding			ovary(2)	2						AGCCAGGCCTCCTCCTATCCC	0.592													46	39					0	0	0.003610	0	0
GPR142	350383	broad.mit.edu	37	17	72363681	72363681	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:72363681C>T	uc010wqy.1	+	1	37	c.37C>T	c.(37-39)CAG>TAG	p.Q13*	GPR142_uc010wqx.1_5'UTR	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	13	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GCAAAAGATCCAGTGGGTCCC	0.502													74	20					0	0	0.003610	0	0
CD300E	342510	broad.mit.edu	37	17	72613347	72613347	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:72613347C>T	uc002jlb.1	-	2	339	c.298G>A	c.(298-300)GGA>AGA	p.G100R		NM_181449	NP_852114	Q496F6	CLM2_HUMAN	CD300e molecule precursor	100	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CAGTAAGATCCAGCATCATCT	0.537													68	30					0	0	0.003610	0	0
FADS6	283985	broad.mit.edu	37	17	72875551	72875551	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:72875551C>T	uc002jmd.1	-	5	901	c.889G>A	c.(889-891)GAT>AAT	p.D297N	FADS6_uc010wrn.1_Missense_Mutation_p.D151N	NM_178128	NP_835229	Q8N9I5	FADS6_HUMAN	fatty acid desaturase domain family, member 6	303					fatty acid biosynthetic process	integral to membrane	oxidoreductase activity				0	all_lung(278;0.172)|Lung NSC(278;0.207)					CACATGTTATCAGAGAGCCTG	0.587													14	30					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	17	76497833	76497833	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:76497833G>A	uc002jvt.1	+	2		c.3292G>A								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		CCTTGGCCACGATCATTTTGG	0.612													83	20					0	0	0.003610	0	0
ENGASE	64772	broad.mit.edu	37	17	77073900	77073900	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:77073900C>T	uc002jwv.2	+	3	378	c.370C>T	c.(370-372)CGG>TGG	p.R124W	ENGASE_uc002jwu.1_Missense_Mutation_p.R124W|ENGASE_uc010wtz.1_5'UTR|ENGASE_uc002jww.2_5'Flank	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	124						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CCAGAGGCCCCGGACTTTGTT	0.592													38	15					0	0	0.004289	0	0
SLC26A11	284129	broad.mit.edu	37	17	78222958	78222958	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:78222958C>T	uc002jyb.1	+	16	1797	c.1528C>T	c.(1528-1530)CCG>TCG	p.P510S	SLC26A11_uc002jyc.1_Missense_Mutation_p.P510S|SLC26A11_uc002jyd.1_Missense_Mutation_p.P510S|SLC26A11_uc010dhv.1_Missense_Mutation_p.P510S	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	510	Extracellular (Potential).|STAS.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CCCAGTGTCCCCGCCACGCTG	0.662													7	4					0	0	0.004482	0	0
CHMP6	79643	broad.mit.edu	37	17	78972191	78972191	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:78972191C>T	uc002jyw.3	+	7	599	c.521C>T	c.(520-522)CCC>CTC	p.P174L		NM_024591	NP_078867	Q96FZ7	CHMP6_HUMAN	chromatin modifying protein 6	174	Interaction with VPS4A.|Type-2 MIT-interacting motif.			Missing: Membrane association; releases autoinhibition.	cellular membrane organization|endosome transport|protein transport	cytosol|endomembrane system|late endosome membrane	protein N-terminus binding			ovary(1)	1	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0175)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			CCAGAGGTTCCCTCCGAGCCC	0.527													97	27					0	0	0.003610	0	0
NOTUM	147111	broad.mit.edu	37	17	79913410	79913410	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:79913410G>A	uc010wvg.1	-	9	1271	c.999C>T	c.(997-999)TTC>TTT	p.F333F		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	333						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			ACTGCACCACGAACACAGGGC	0.701													31	9					0	0	0.002222	0	0
ZNF750	79755	broad.mit.edu	37	17	80790281	80790281	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr17:80790281C>T	uc002kga.2	-	2	361	c.50G>A	c.(49-51)AGG>AAG	p.R17K	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	17						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TCCTGGAGGCCTGGGGATGTA	0.443													36	88					0	0	0.002222	0	0
SMCHD1	23347	broad.mit.edu	37	18	2700607	2700607	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:2700607T>C	uc002klm.3	+	11	1602	c.1413T>C	c.(1411-1413)ATT>ATC	p.I471I	SMCHD1_uc002klk.3_5'Flank	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	471					chromosome organization		ATP binding				0						AAAGGCCTATTTTTGAATGTT	0.303													6	13					0	0	0.003080	0	0
DLGAP1	9229	broad.mit.edu	37	18	3729341	3729341	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:3729341G>A	uc002kmf.2	-	4	1452	c.1385C>T	c.(1384-1386)TCC>TTC	p.S462F	DLGAP1_uc010wyz.1_Missense_Mutation_p.S462F|DLGAP1_uc002kme.1_Missense_Mutation_p.S160F|DLGAP1_uc010dkn.2_Missense_Mutation_p.S160F|DLGAP1_uc010wyw.1_Missense_Mutation_p.S168F|DLGAP1_uc010wyx.1_Missense_Mutation_p.S174F|DLGAP1_uc010wyy.1_Missense_Mutation_p.S174F|DLGAP1_uc002kmg.2_Missense_Mutation_p.S160F|DLGAP1_uc002kmk.2_Missense_Mutation_p.S462F	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	462					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CTCGCACACGGACTCGAACTG	0.632													10	11					0	0	0.000978	0	0
KIAA0802	23255	broad.mit.edu	37	18	8784642	8784642	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:8784642T>A	uc002knr.2	+	6	1674	c.1532T>A	c.(1531-1533)CTG>CAG	p.L511Q	KIAA0802_uc002knq.2_Missense_Mutation_p.L511Q|KIAA0802_uc010dkw.1_Missense_Mutation_p.L349Q	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	862											0						GAGCCCCAGCTGCTGGGGACC	0.652													13	21					0	0	0.001855	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478410	14478410	+	RNA	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:14478410C>G	uc010xai.1	-	3		c.1154G>C				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						ACGTACGGCTCTTTGGAGGCG	0.448													3	3					0	0	0.000602	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995673	19995673	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:19995673G>A	uc002ktv.1	-	1	2206	c.2102C>T	c.(2101-2103)CCA>CTA	p.P701L		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	701	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					AAAATAATCTGGAGAAGCTCC	0.488													16	26					0	0	0.004990	0	0
DSC2	1824	broad.mit.edu	37	18	28667695	28667695	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:28667695C>T	uc002kwl.3	-	6	1166	c.712G>A	c.(712-714)GAT>AAT	p.D238N	DSC2_uc002kwk.3_Missense_Mutation_p.D238N	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	238	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			GGGTAGTTATCATTTTCATCC	0.333													12	33					0	0	0.001368	0	0
DSC1	1823	broad.mit.edu	37	18	28737418	28737418	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:28737418C>T	uc002kwn.2	-	3	529	c.267G>A	c.(265-267)AGG>AGA	p.R89R	DSC1_uc002kwm.2_Silent_p.R89R	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	89					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			AAAAACTTTTCCTTTCAGAAG	0.428													11	26					0	0	0.008291	0	0
DSG1	1828	broad.mit.edu	37	18	28934380	28934380	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:28934380G>A	uc002kwp.2	+	15	2433	c.2221G>A	c.(2221-2223)GAA>AAA	p.E741K	DSG1_uc010xbp.1_Missense_Mutation_p.E100K	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	741	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CTTCATTGGAGAAGACCTGGA	0.458													22	65					0	0	0.003954	0	0
DSG3	1830	broad.mit.edu	37	18	29052712	29052712	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:29052712C>T	uc002kws.2	+	14	2171	c.2062C>T	c.(2062-2064)CCT>TCT	p.P688S	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	688	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TTGTGTGCCTCCTGTAACAGC	0.343													12	15					0	0	0.003163	0	0
DSG2	1829	broad.mit.edu	37	18	29126020	29126020	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:29126020C>T	uc002kwu.3	+	15	2859	c.2671C>T	c.(2671-2673)CCA>TCA	p.P891S	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	891	Desmoglein repeat 1.|Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			CTTCCCAGTTCCAAAATCTTT	0.433													16	30					0	0	0.004007	0	0
GALNT1	2589	broad.mit.edu	37	18	33269215	33269215	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:33269215G>A	uc010dmu.2	+	7	992	c.939G>A	c.(937-939)ATG>ATA	p.M313I	GALNT1_uc002kyz.3_Missense_Mutation_p.M253I|GALNT1_uc002kzb.2_Missense_Mutation_p.M313I	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	313	Lumenal (Potential).|Catalytic subdomain B.				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ATGCTGGAATGGATATTTGGG	0.338													21	35					0	0	0.002299	0	0
SETBP1	26040	broad.mit.edu	37	18	42281456	42281456	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:42281456C>T	uc010dni.2	+	2	441	c.145C>T	c.(145-147)CCG>TCG	p.P49S	SETBP1_uc002lay.2_Missense_Mutation_p.P49S	NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	49						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GAAGGGGATCCCGGTGGGCGG	0.627									Schinzel-Giedion_syndrome				5	11					0	0	0.000602	0	0
SETBP1	26040	broad.mit.edu	37	18	42531100	42531100	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:42531100G>A	uc010dni.2	+	4	2091	c.1795G>A	c.(1795-1797)GAG>AAG	p.E599K		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	599						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GCTCACAGTCGAGACGATTCA	0.517									Schinzel-Giedion_syndrome				9	30					0	0	0.004482	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555308	44555308	+	Silent	SNP	C	T	T	rs144408880	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:44555308C>T	uc010xdb.1	-	1	1142	c.906G>A	c.(904-906)GCG>GCA	p.A302A	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	302					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GGAGCGCTGGCGCGGAGAGTG	0.632													12	286					0	0	0.001855	0	0
KATNAL2	83473	broad.mit.edu	37	18	44584636	44584636	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:44584636C>T	uc002lco.2	+	4	341	c.147C>T	c.(145-147)CCC>CCT	p.P49P	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Silent_p.P9P	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	121						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						AAAATCTTCCCAAGATCAATC	0.453													9	26					0	0	0.004482	0	0
DYM	54808	broad.mit.edu	37	18	46956685	46956685	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:46956685G>A	uc002ldi.1	-	2	445	c.80C>T	c.(79-81)TCT>TTT	p.S27F	DYM_uc010xdf.1_Missense_Mutation_p.S27F	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	27						Golgi apparatus					0						GTCATTCTCAGAGATAGATTC	0.418													19	57					0	0	0.007413	0	0
CCDC11	220136	broad.mit.edu	37	18	47769351	47769351	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:47769351C>T	uc002lee.2	-	6	1223	c.1132G>A	c.(1132-1134)GAG>AAG	p.E378K		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	378	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		AGTCTCAGCTCCTTGTCCTTC	0.413													36	85					0	0	0.006999	0	0
DCC	1630	broad.mit.edu	37	18	50936947	50936947	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:50936947C>T	uc002lfe.1	+	20	3648	c.3061C>T	c.(3061-3063)CGA>TGA	p.R1021*	DCC_uc010xdr.1_Nonsense_Mutation_p.R849*|DCC_uc010dpf.1_Nonsense_Mutation_p.R656*	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1021	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GTATTACTTTCGAATTCAAGC	0.378													6	30					0	0	0.001984	0	0
DCC	1630	broad.mit.edu	37	18	51053037	51053037	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:51053037G>A	uc002lfe.1	+	28	4749	c.4162G>A	c.(4162-4164)GGA>AGA	p.G1388R	DCC_uc010dpf.1_Missense_Mutation_p.G1021R	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1388	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGGGTTGGCTGGAAAAGCAAG	0.483													18	46					0	0	0.008871	0	0
C18orf26	284254	broad.mit.edu	37	18	52262277	52262277	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:52262277G>A	uc002lfq.1	+	2	289	c.243G>A	c.(241-243)GTG>GTA	p.V81V	C18orf26_uc002lfp.1_Intron	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	81						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		GGGTCTGCGTGAACCCAGGAA	0.453													23	53					0	0	0.005443	0	0
C18orf26	284254	broad.mit.edu	37	18	52265336	52265336	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:52265336C>T	uc002lfq.1	+	3	639	c.593C>T	c.(592-594)TCC>TTC	p.S198F	C18orf26_uc002lfp.1_Missense_Mutation_p.S146F	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	198	Thr-rich.					integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		GCCACCACTTCCACAGAACCT	0.453													13	21					0	0	0.003163	0	0
TCF4	6925	broad.mit.edu	37	18	52899845	52899845	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:52899845G>A	uc002lfz.2	-	17	2156	c.1544C>T	c.(1543-1545)TCC>TTC	p.S515F	TCF4_uc002lfw.3_Missense_Mutation_p.S355F|TCF4_uc010xdu.1_Missense_Mutation_p.S385F|TCF4_uc010xdv.1_Missense_Mutation_p.S385F|TCF4_uc002lfx.2_Missense_Mutation_p.S444F|TCF4_uc010xdw.1_Missense_Mutation_p.S385F|TCF4_uc002lfy.2_Missense_Mutation_p.S473F|TCF4_uc010xdx.1_Missense_Mutation_p.S491F|TCF4_uc010dph.1_Missense_Mutation_p.S515F|TCF4_uc010xdy.1_Missense_Mutation_p.S491F|TCF4_uc002lga.2_Missense_Mutation_p.S617F|TCF4_uc002lgb.1_Missense_Mutation_p.S355F|TCF4_uc010dpi.2_Missense_Mutation_p.S521F|TCF4_uc002lfv.2_Missense_Mutation_p.S298F	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	515					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		CTCGTCATCGGATTTGATCTC	0.468													14	35					0	0	0.003163	0	0
TCF4	6925	broad.mit.edu	37	18	53070731	53070731	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:53070731G>A	uc002lfz.2	-	6	935	c.323C>T	c.(322-324)TCA>TTA	p.S108L	TCF4_uc010xdu.1_5'Flank|TCF4_uc010xdv.1_5'Flank|TCF4_uc002lfx.2_Missense_Mutation_p.S38L|TCF4_uc010xdw.1_5'UTR|TCF4_uc002lfy.2_Missense_Mutation_p.S66L|TCF4_uc010xdx.1_Missense_Mutation_p.S84L|TCF4_uc010dph.1_Missense_Mutation_p.S108L|TCF4_uc010xdy.1_Missense_Mutation_p.S84L|TCF4_uc002lga.2_Missense_Mutation_p.S210L|TCF4_uc010dpi.2_Missense_Mutation_p.S108L|TCF4_uc002lgc.3_Missense_Mutation_p.S29L	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	108					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		AGATGAGTATGAGCCCCTTTC	0.408													21	60					0	0	0.001882	0	0
WDR7	23335	broad.mit.edu	37	18	54385259	54385259	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:54385259G>A	uc002lgk.1	+	13	1854	c.1643G>A	c.(1642-1644)CGA>CAA	p.R548Q	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.R548Q	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	548										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		CTAAGTTTGCGAGAGAAAAAA	0.408													18	25					0	0	0.008871	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55021697	55021697	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:55021697G>A	uc002lgn.2	+	2	601	c.244G>A	c.(244-246)GAA>AAA	p.E82K		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	82	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		TCTCACCCAGGAACTCCAAGA	0.448													20	29					0	0	0.008871	0	0
GRP	2922	broad.mit.edu	37	18	56892918	56892918	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:56892918G>A	uc002lhv.2	+	2	432	c.334G>A	c.(334-336)GAT>AAT	p.D112N	GRP_uc002lhu.2_Missense_Mutation_p.D112N|GRP_uc002lhw.2_Missense_Mutation_p.D112N	NM_002091	NP_002082	P07492	GRP_HUMAN	gastrin-releasing peptide isoform 1	112					neuropeptide signaling pathway	extracellular space	neuropeptide hormone activity				0		Colorectal(73;0.0946)				GCCTTCGTGGGATTCAGAGGA	0.498													20	52					0	0	0.001523	0	0
MC4R	4160	broad.mit.edu	37	18	58038642	58038642	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:58038642T>C	uc002lie.1	-	1	1360	c.941A>G	c.(940-942)AAA>AGA	p.K314R		NM_005912	NP_005903	P32245	MC4R_HUMAN	melanocortin 4 receptor	314	Cytoplasmic (Potential).				feeding behavior|G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of bone resorption|positive regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|ubiquitin protein ligase binding			lung(1)	1		Colorectal(73;0.0946)				GATGATCTCTTTGAAGGTTTT	0.413													13	49					0	0	0.001855	0	0
BCL2	596	broad.mit.edu	37	18	60795907	60795907	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:60795907G>A	uc002lit.1	-	3	1164	c.671C>T	c.(670-672)GCC>GTC	p.A224V	BCL2_uc002liu.1_Missense_Mutation_p.A224V	NM_000633	NP_000624	P10415	BCL2_HUMAN	B-cell lymphoma protein 2 alpha isoform	224	Helical; (Potential).				activation of pro-apoptotic gene products|anti-apoptosis|apoptosis in response to endoplasmic reticulum stress|B cell proliferation|B cell receptor signaling pathway|defense response to virus|female pregnancy|humoral immune response|induction of apoptosis by intracellular signals|negative regulation of cellular pH reduction|negative regulation of mitochondrial depolarization|negative regulation of neuron apoptosis|neuron apoptosis|positive regulation of B cell proliferation|positive regulation of cell growth|protein polyubiquitination|regulation of mitochondrial membrane permeability|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|regulation of transmembrane transporter activity|release of cytochrome c from mitochondria|response to cytokine stimulus|response to DNA damage stimulus|response to drug|response to iron ion|response to nicotine|response to toxin	endoplasmic reticulum membrane|mitochondrial outer membrane|nuclear membrane|pore complex	BH3 domain binding|channel activity|protease binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|ubiquitin protein ligase binding			central_nervous_system(1)	1		all_hematologic(56;1.18e-20)|Prostate(75;0.0872)		Lung(128;0.0234)|READ - Rectum adenocarcinoma(59;0.0935)	Docetaxel(DB01248)|Fludarabine(DB01073)|Melatonin(DB01065)|Paclitaxel(DB01229)|Rasagiline(DB01367)	TCCCACCAGGGCCAAACTGAG	0.537			T	IGH@	NHL|CLL								15	14					0	0	0.003163	0	0
KDSR	2531	broad.mit.edu	37	18	61006117	61006117	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:61006117C>T	uc010dpw.2	-	8	849	c.694_splice	c.e8-1	p.P232_splice	KDSR_uc010xem.1_Splice_Site_p.P168_splice	NM_002035	NP_002026	Q06136	KDSR_HUMAN	3-ketodihydrosphingosine reductase precursor						3-keto-sphinganine metabolic process	endoplasmic reticulum membrane|extracellular space|integral to membrane	3-dehydrosphinganine reductase activity|binding			skin(1)	1						TCTCCAAAGGCTAAAAGTGGA	0.333													8	16					0	0	0.008291	0	0
DOK6	220164	broad.mit.edu	37	18	67266698	67266698	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:67266698C>T	uc002lkl.2	+	3	443	c.253C>T	c.(253-255)CAC>TAC	p.H85Y		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	85	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				AATCATCTTTCACGATGAAAC	0.418													6	16					0	0	0.001168	0	0
DOK6	220164	broad.mit.edu	37	18	67345046	67345046	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:67345046G>A	uc002lkl.2	+	4	556	c.366G>A	c.(364-366)GGG>GGA	p.G122G		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	122							insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				TCAGCCTTGGGGAGCCCGACC	0.512													11	24					0	0	0.001855	0	0
NETO1	81832	broad.mit.edu	37	18	70417346	70417346	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:70417346C>T	uc002lkw.2	-	9	1776	c.1492G>A	c.(1492-1494)GTG>ATG	p.V498M	NETO1_uc002lkx.1_Missense_Mutation_p.V497M|NETO1_uc002lky.1_Missense_Mutation_p.V498M	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	498	Cytoplasmic (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GTGGTCGGCACCTCTTCGATT	0.458													13	20					0	0	0.002450	0	0
SALL3	27164	broad.mit.edu	37	18	76754335	76754335	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr18:76754335G>A	uc002lmt.2	+	2	2344	c.2344G>A	c.(2344-2346)GAG>AAG	p.E782K	SALL3_uc010dra.2_Missense_Mutation_p.E389K	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	782					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CATGGACTCCGAGCTGGCCTA	0.642													8	11					0	0	0.008291	0	0
RNF126	55658	broad.mit.edu	37	19	651691	651691	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:651691C>T	uc010drs.2	-	4	469	c.363G>A	c.(361-363)CGG>CGA	p.R121R	RNF126_uc002lpi.2_5'UTR	NM_194460	NP_919442	Q9BV68	RN126_HUMAN	ring finger protein 126	121							protein binding|zinc ion binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCGCCGTACCGGTGCCGGG	0.751													6	2					0	0	0.001984	0	0
ANKRD24	170961	broad.mit.edu	37	19	4222739	4222739	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:4222739C>T	uc010dtt.1	+	20	3520	c.3244C>T	c.(3244-3246)CCT>TCT	p.P1082S		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1082	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		CCTCGCCACCCCTGAGGTGGA	0.597													5	3					0	0	0.001168	0	0
ARRDC5	645432	broad.mit.edu	37	19	4902817	4902817	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:4902817G>A	uc002mbm.2	-	1	63	c.63C>T	c.(61-63)ATC>ATT	p.I21I		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	21					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		GCACTAATTCGATCGACTTCA	0.547													25	14					0	0	0.003954	0	0
TMEM146	257062	broad.mit.edu	37	19	5733907	5733907	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:5733907C>T	uc002mda.2	+	5	378	c.317C>T	c.(316-318)TCG>TTG	p.S106L	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	106	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTTGCTGGTTCGTTATTGCTG	0.313													19	7					0	0	0.002299	0	0
FUT3	2525	broad.mit.edu	37	19	5843768	5843768	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:5843768G>A	uc002mdk.2	-	2	1180	c.1083C>T	c.(1081-1083)ACC>ACT	p.T361T	FUT3_uc002mdm.2_Silent_p.T361T|FUT3_uc002mdj.2_Silent_p.T361T|FUT3_uc002mdl.2_Silent_p.T361T	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	361	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						CGGCCTCTCAGGTGAACCAAG	0.622													28	15					0	0	0.008361	0	0
C3	718	broad.mit.edu	37	19	6707832	6707832	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:6707832G>A	uc002mfm.2	-	15	2016	c.1954C>T	c.(1954-1956)CAG>TAG	p.Q652*		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	652					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GCGGTCTGCTGGCCACTGCTG	0.612													29	21					0	0	0.002096	0	0
KIAA1543	57662	broad.mit.edu	37	19	7676920	7676920	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:7676920C>T	uc002mgv.3	+	11	1642	c.1541C>T	c.(1540-1542)ACC>ATC	p.T514I	KIAA1543_uc002mgu.3_Missense_Mutation_p.T541I|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	514	Pro-rich.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GACAGGCCCACCAAAGCACCA	0.662													12	10					0	0	0.001368	0	0
EVI5L	115704	broad.mit.edu	37	19	7912683	7912683	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:7912683C>T	uc002min.2	+	3	357	c.203C>T	c.(202-204)TCG>TTG	p.S68L	EVI5L_uc010xjz.1_Missense_Mutation_p.S68L	NM_145245	NP_660288	Q96CN4	EVI5L_HUMAN	ecotropic viral integration site 5-like isoform	68						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						AGTGGCTCCTCGCTAGTGTCC	0.662													8	9					0	0	0.003080	0	0
PRAM1	84106	broad.mit.edu	37	19	8564197	8564198	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:8564197_8564198CC>TT	uc002mkd.2	-	2	514_515	c.494_495GG>AA	c.(493-495)CGG>CAA	p.R165Q	PRAM1_uc002mkc.2_Missense_Mutation_p.R165Q	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	213	Pro-rich.						lipid binding|protein binding				0						GCAGGGGTTTCCGGGCCGGCGC	0.693													10	7					0	0	0.004672	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8670023	8670023	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:8670023G>A	uc002mkj.1	-	4	583	c.309C>T	c.(307-309)TCC>TCT	p.S103S	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	103					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						AGTACTCCACGGAGACGTGCC	0.687													15	6					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	8996474	8996474	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:8996474C>T	uc002mkp.2	-	61	41302	c.41098G>A	c.(41098-41100)GCC>ACC	p.A13700T	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.A517T|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13702	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTCCAGTGGCTGTCCCATCC	0.547													12	13					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	8997440	8997440	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:8997440T>G	uc002mkp.2	-	59	41186	c.40982A>C	c.(40981-40983)AAC>ACC	p.N13661T	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.N478T|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13663	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCCGTGGTGTTGAACTTCCT	0.572													36	8					0	0	0.005524	0	0
MUC16	94025	broad.mit.edu	37	19	9066603	9066603	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:9066603G>A	uc002mkp.2	-	3	21047	c.20843C>T	c.(20842-20844)TCC>TTC	p.S6948F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6950	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGAGTCAAGGAATATGTTGA	0.448													67	39					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9067326	9067326	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:9067326G>A	uc002mkp.2	-	3	20324	c.20120C>T	c.(20119-20121)TCC>TTC	p.S6707F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6709	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACTCTGTGGAATGATCAGG	0.478													71	46					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9070778	9070778	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:9070778G>A	uc002mkp.2	-	3	16872	c.16668C>T	c.(16666-16668)ATC>ATT	p.I5556I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5558	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTTTGTCATGATGGGGGAGG	0.502													57	32					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9087904	9087904	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:9087904G>A	uc002mkp.2	-	1	4115	c.3911C>T	c.(3910-3912)TCA>TTA	p.S1304L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1304	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATCTCAGGTGAAGACCCAGA	0.493													23	15					0	0	0.001882	0	0
OR7G1	125962	broad.mit.edu	37	19	9226274	9226274	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:9226274G>A	uc002mks.1	-	1	166	c.166C>T	c.(166-168)CAC>TAC	p.H56Y		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						ATGGGGGTGTGGAGGTGGGAG	0.483													42	20					0	0	0.002852	0	0
OR7D2	162998	broad.mit.edu	37	19	9296535	9296535	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:9296535C>T	uc002mkz.1	+	1	266	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	26	Helical; Name=1; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TACAGCCGTTCATATTTGGGC	0.493													16	4					0	0	0.004007	0	0
ICAM5	7087	broad.mit.edu	37	19	10404813	10404813	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:10404813G>A	uc002mnu.3	+	8	1874	c.1809G>A	c.(1807-1809)CAG>CAA	p.Q603Q	ICAM5_uc002mnv.3_Silent_p.Q478Q	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	603	Extracellular (Potential).|Ig-like C2-type 7.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			GGAAGCCACAGCCAAGCGTGA	0.647													47	28					0	0	0.003610	0	0
S1PR5	53637	broad.mit.edu	37	19	10624658	10624658	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:10624658C>T	uc002mot.1	-	2	1087	c.1030G>A	c.(1030-1032)GCT>ACT	p.A344T	S1PR5_uc002mou.1_Missense_Mutation_p.A344T	NM_030760	NP_110387	Q9H228	S1PR5_HUMAN	endothelial differentiation, sphingolipid	344	Cytoplasmic (By similarity).					integral to membrane|plasma membrane	lysosphingolipid and lysophosphatidic acid receptor activity			central_nervous_system(1)|pancreas(1)	2						CCCCCGGAAGCCTCAGCCGCG	0.756													4	3					0	0	0.000602	0	0
AP1M2	10053	broad.mit.edu	37	19	10692467	10692467	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:10692467C>T	uc002mpc.2	-	4	439	c.355G>A	c.(355-357)GAC>AAC	p.D119N	AP1M2_uc002mpd.2_Missense_Mutation_p.D119N	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	119					cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			AAGCCAAAGTCCATGAGCTCG	0.577													12	4					0	0	0.002450	0	0
LDLR	3949	broad.mit.edu	37	19	11231068	11231068	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:11231068C>T	uc002mqk.3	+	14	2178	c.2010C>T	c.(2008-2010)ACC>ACT	p.T670T	LDLR_uc010xlk.1_Silent_p.T670T|LDLR_uc010xll.1_Silent_p.T629T|LDLR_uc010xlm.1_Silent_p.T523T|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Silent_p.T502T	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	670	EGF-like 3.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	GTGAGAGGACCACCCTGAGCA	0.582													83	38					0	0	0.003610	0	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408													3	18					0	0	0.004672	0	0
ZNF799	90576	broad.mit.edu	37	19	12501354	12501354	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:12501354G>A	uc010dyt.2	-	4	2008	c.1858C>T	c.(1858-1860)CCG>TCG	p.P620S	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	620					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						CATCCATACGGGTTCTCTCCA	0.403													52	31					0	0	0.003610	0	0
GCDH	2639	broad.mit.edu	37	19	13007225	13007226	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:13007225_13007226CC>TT	uc002mvq.2	+	8	919_920	c.842_843CC>TT	c.(841-843)TCC>TTT	p.S281F	GCDH_uc010xms.1_Missense_Mutation_p.S248F|GCDH_uc002mvp.2_Missense_Mutation_p.S281F|GCDH_uc010xmt.1_Missense_Mutation_p.S115F|GCDH_uc010xmu.1_Missense_Mutation_p.S237F	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	281					lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						CCTGGTGCATCCAGCCTGGGGG	0.634													9	2					0	0	0.004672	0	0
CCDC130	81576	broad.mit.edu	37	19	13873709	13873709	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:13873709A>G	uc002mxb.1	+	11	1521	c.1018A>G	c.(1018-1020)ACA>GCA	p.T340A	CCDC130_uc002mxc.1_Missense_Mutation_p.T340A|CCDC130_uc002mxd.1_Missense_Mutation_p.T195A|CCDC130_uc010dzf.1_Missense_Mutation_p.T234A|MRI1_uc002mxe.2_5'Flank|MRI1_uc002mxf.2_5'Flank	NM_030818	NP_110445	P13994	CC130_HUMAN	coiled-coil domain containing 130	340					response to virus		protein binding				0			OV - Ovarian serous cystadenocarcinoma(19;6.02e-23)|Epithelial(5;2.58e-18)			TCCTCCGGAAACAACTGAGAC	0.692													7	2					0	0	0.003080	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710954	14710954	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:14710954A>T	uc010dzn.1	+	12	931	c.854A>T	c.(853-855)AAT>ATT	p.N285I	CLEC17A_uc002mzh.1_Missense_Mutation_p.N268I|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Missense_Mutation_p.N285I			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	285	C-type lectin.|Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						TGCCAGGAGAATTACTCTCAC	0.512													16	9					0	0	0.003163	0	0
SLC1A6	6511	broad.mit.edu	37	19	15065069	15065069	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:15065069G>A	uc002naa.1	-	7	1250	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	SLC1A6_uc010dzu.1_Silent_p.F336F|SLC1A6_uc010xod.1_Silent_p.F350F	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	414					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CGGGCAGGACGAACCTGGTGA	0.627													28	20					0	0	0.002836	0	0
NOTCH3	4854	broad.mit.edu	37	19	15302774	15302774	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:15302774G>A	uc002nan.2	-	4	752	c.676C>T	c.(676-678)CCT>TCT	p.P226S	NOTCH3_uc002nao.1_Missense_Mutation_p.P226S	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	226	Extracellular (Potential).|EGF-like 5.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CACTCACCAGGAAGACAGGCA	0.642													13	8					0	0	0.002450	0	0
AKAP8L	26993	broad.mit.edu	37	19	15512027	15512027	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:15512027G>A	uc002naw.1	-	5	849	c.750C>T	c.(748-750)TTC>TTT	p.F250F	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Silent_p.F189F|AKAP8L_uc002nay.1_Silent_p.F250F|AKAP8L_uc002naz.2_Silent_p.F98F	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	250						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						TGCCAAACCCGAAACCAAAGC	0.632													83	61					0	0	0.003610	0	0
CYP4F8	11283	broad.mit.edu	37	19	15726592	15726592	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:15726592G>A	uc002nbi.2	+	2	229	c.165G>A	c.(163-165)CGG>CGA	p.R55R	CYP4F8_uc010xoi.1_Silent_p.R55R|CYP4F8_uc010xoj.1_Missense_Mutation_p.G17E	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	55					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CGCAGCCCCGGAAACAGAACT	0.642													31	17					0	0	0.002836	0	0
OR10H1	26539	broad.mit.edu	37	19	15917920	15917920	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:15917920G>C	uc002nbq.2	-	1	1017	c.928C>G	c.(928-930)CTC>GTC	p.L310V		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTGGGTAGAGTTTACTGAAG	0.413													27	9					0	0	0.006320	0	0
CYP4F2	8529	broad.mit.edu	37	19	16006401	16006401	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:16006401C>T	uc002nbs.1	-	3	308	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q	CYP4F2_uc010xot.1_5'UTR|CYP4F2_uc010xou.1_Intron	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	86					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						CCTTAAAGCCCTGGGGGTAGG	0.547													43	30					0	0	0.003610	0	0
OR10H4	126541	broad.mit.edu	37	19	16060709	16060709	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:16060709G>A	uc010xov.1	+	1	892	c.892G>A	c.(892-894)GAG>AAG	p.E298K		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AAGGAACAAGGAGCTGAAGAA	0.433													53	24					0	0	0.003610	0	0
B3GNT3	10331	broad.mit.edu	37	19	17918754	17918754	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:17918754C>T	uc002nhk.1	+	2	223	c.138C>T	c.(136-138)GCC>GCT	p.A46A	B3GNT3_uc002nhl.1_Silent_p.A46A|B3GNT3_uc010ebd.1_Silent_p.A46A|B3GNT3_uc010ebe.1_Silent_p.A46A	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	46	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						TCCCCGAGGCCCTGGCCTGGC	0.682													12	5					0	0	0.000978	0	0
HOMER3	9454	broad.mit.edu	37	19	19049244	19049244	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:19049244G>A	uc002nku.2	-	3	874	c.221C>T	c.(220-222)TCC>TTC	p.S74F	HOMER3_uc010eby.2_Missense_Mutation_p.S74F|HOMER3_uc010ebz.2_Missense_Mutation_p.S74F|HOMER3_uc002nkw.2_Missense_Mutation_p.S74F|HOMER3_uc002nkv.2_Missense_Mutation_p.S74F	NM_004838	NP_004829	Q9NSC5	HOME3_HUMAN	Homer, neuronal immediate early gene, 3 isoform	74	WH1.				metabotropic glutamate receptor signaling pathway|protein targeting	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	protein binding				0			Epithelial(12;0.0107)			GAACTTCTGGGAAGTTTTGGT	0.458													21	16					0	0	0.001523	0	0
NCAN	1463	broad.mit.edu	37	19	19338113	19338113	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:19338113C>T	uc002nlz.2	+	8	1783	c.1684C>T	c.(1684-1686)CCA>TCA	p.P562S	NCAN_uc010ecc.1_Missense_Mutation_p.P126S	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	562					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CAAGAGCTCCCCAGAGCCCTG	0.612													36	22					0	0	0.006999	0	0
CILP2	148113	broad.mit.edu	37	19	19655896	19655896	+	Missense_Mutation	SNP	G	A	A	rs138043504		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:19655896G>A	uc002nmv.3	+	8	2627	c.2542G>A	c.(2542-2544)GAC>AAC	p.D848N	CILP2_uc002nmw.3_Missense_Mutation_p.D854N	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	848						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CCGTCGGACGGACCACGACGA	0.706													21	7					0	0	0.001882	0	0
ZNF682	91120	broad.mit.edu	37	19	20117929	20117929	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:20117929C>T	uc002noq.2	-	4	505	c.382G>A	c.(382-384)GAA>AAA	p.E128K	ZNF682_uc002noo.2_Missense_Mutation_p.E96K|ZNF682_uc002nop.2_Missense_Mutation_p.E96K|ZNF682_uc010eck.2_Missense_Mutation_p.E52K	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TTATAAATTTCTTTTTGATCC	0.328													29	15					0	0	0.002836	0	0
ZNF626	199777	broad.mit.edu	37	19	20808123	20808123	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:20808123G>A	uc002npb.1	-	4	710	c.560C>T	c.(559-561)ACT>ATT	p.T187I	ZNF626_uc002npc.1_Missense_Mutation_p.T111I	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	187	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGTAGTAAGAGTTGAGAACTG	0.363													16	8					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	19	20975441	20975441	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:20975441C>T	uc002npe.2	+	2		c.302C>T								Homo sapiens zinc finger protein 66, mRNA (cDNA clone MGC:87430 IMAGE:5270688), complete cds.																		CCTGGTCTTTCTTGGTGAGAA	0.333													14	13					0	0	0.002450	0	0
ZNF208	7757	broad.mit.edu	37	19	22154256	22154256	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22154256C>T	uc002nqp.2	-	6	3345	c.3196G>A	c.(3196-3198)GAG>AAG	p.E1066K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TAGAGTTTCTCTCCAGTATGA	0.373													13	7					0	0	0.002450	0	0
ZNF208	7757	broad.mit.edu	37	19	22193595	22193595	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22193595A>C	uc002nqp.2	-	1	151	c.2T>G	c.(1-3)ATG>AGG	p.M1R	ZNF208_uc002nqo.1_Missense_Mutation_p.M1R|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CACACTCACCATTTCTAGGCT	0.622													11	6					0	0	0.001368	0	0
ZNF257	113835	broad.mit.edu	37	19	22271407	22271407	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22271407C>T	uc010ecx.2	+	4	1024	c.855C>T	c.(853-855)TTC>TTT	p.F285F	ZNF257_uc010ecy.2_Silent_p.F253F	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	285	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGAAGCCCTTCAAATATGATG	0.393													11	3					0	0	0.008291	0	0
ZNF676	163223	broad.mit.edu	37	19	22363780	22363780	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22363780G>A	uc002nqs.1	-	3	1057	c.739C>T	c.(739-741)CAT>TAT	p.H247Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	247	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCCAGTATGAATTATCTTA	0.368													13	18					0	0	0.001855	0	0
ZNF98	148198	broad.mit.edu	37	19	22586228	22586228	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22586228C>A	uc002nqt.2	-	2	239	c.117G>T	c.(115-117)AGG>AGT	p.R39S		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	39	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				ACATCACATTCCTATATAAAT	0.383													51	15					7.47603e-22	1.03472e-21	0.003610	1	0
ZNF99	7652	broad.mit.edu	37	19	22939443	22939443	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22939443G>A	uc010xrh.1	-	7	2728	c.2728C>T	c.(2728-2730)CAT>TAT	p.H910Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCCCCAGTATGAATTATCTTA	0.358													18	8					0	0	0.001523	0	0
ZNF99	7652	broad.mit.edu	37	19	22940058	22940058	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:22940058G>A	uc010xrh.1	-	6	2273	c.2273C>T	c.(2272-2274)TCC>TTC	p.S758F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGGGTTGAGGAATTGTTAAA	0.348													12	16					0	0	0.001368	0	0
TSHZ3	57616	broad.mit.edu	37	19	31769651	31769651	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:31769651C>T	uc002nsy.3	-	2	1113	c.1048G>A	c.(1048-1050)GAT>AAT	p.D350N		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	350					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TGAAGTGCATCGTTGGTGTCT	0.567													74	49					0	0	0.003610	0	0
CCDC123	84902	broad.mit.edu	37	19	33417176	33417177	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:33417176_33417177CC>TT	uc002nty.2	-	11	1172_1173	c.1083_1084GG>AA	c.(1081-1086)TTGGAT>TTAAAT	p.D362N	CCDC123_uc002ntx.2_Missense_Mutation_p.D115N|CCDC123_uc010edg.2_RNA|CCDC123_uc002ntz.1_Missense_Mutation_p.D362N	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	362						centrosome|spindle pole					0	Esophageal squamous(110;0.137)					TACTTTATATCCAACTGAAGAT	0.366													72	52					0	0	0.004672	0	0
FFAR3	2865	broad.mit.edu	37	19	35849867	35849867	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:35849867C>T	uc002nzd.2	+	2	150	c.75C>T	c.(73-75)TTC>TTT	p.F25F	FFAR3_uc010xsu.1_RNA	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	25	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			TTCTCACTTTCCTGGTGGGGC	0.632													13	33					0	0	0.004656	0	0
NPHS1	4868	broad.mit.edu	37	19	36342518	36342518	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:36342518C>T	uc002oby.2	-	2	115	c.115G>A	c.(115-117)GAA>AAA	p.E39K		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	39	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTCAGGTTTTCAGGCAGGGCC	0.657													11	6					0	0	0.001368	0	0
C19orf46	163183	broad.mit.edu	37	19	36496269	36496269	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:36496269C>T	uc002ocq.1	-	6	1027	c.938G>A	c.(937-939)CGT>CAT	p.R313H	C19orf46_uc002ocr.1_Silent_p.T253T|C19orf46_uc002ocs.1_Missense_Mutation_p.R200H|C19orf46_uc010een.1_Missense_Mutation_p.R228H	NM_001039876	NP_001034965	Q8N205	SYNE4_HUMAN	hypothetical protein LOC163183	313	Cytoplasmic (Potential).				establishment of epithelial cell apical/basal polarity	integral to nuclear outer membrane	actin binding			ovary(1)	1	all_lung(56;1.35e-06)|Lung NSC(56;2.15e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TCTTTGGTGACGTGCTAAGCG	0.443													20	10					0	0	0.001523	0	0
PSG8	440533	broad.mit.edu	37	19	43268068	43268068	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:43268068G>A	uc002ouo.2	-	2	528	c.430C>T	c.(430-432)CTG>TTG	p.L144L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_Intron|PSG8_uc002ouh.2_Silent_p.L144L|PSG8_uc010ein.2_Intron|PSG8_uc002ouj.3_Missense_Mutation_p.P19S|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Silent_p.L144L|PSG8_uc002oum.3_Missense_Mutation_p.P144S|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.P144S	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	144	Ig-like V-type.					extracellular region					0		Prostate(69;0.00899)				AATCACTCACGATATAAGGTG	0.498													83	47					0	0	0.003610	0	0
PSG6	5675	broad.mit.edu	37	19	43414834	43414834	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:43414834A>G	uc002ovj.1	-	3	656	c.604T>C	c.(604-606)TAT>CAT	p.Y202H	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.Y209H|PSG6_uc002ovi.2_Missense_Mutation_p.Y203H|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.Y202H|PSG6_uc002ovg.1_Missense_Mutation_p.Y202H	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	202	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CCAAATAGATAGAGGGTCCTG	0.502													70	52					0	0	0.003610	0	0
ZNF229	7772	broad.mit.edu	37	19	44936434	44936434	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:44936434G>A	uc002oze.1	-	5	635	c.201C>T	c.(199-201)TTC>TTT	p.F67F	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Silent_p.F67F	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	67	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GTAGGTTCCTGAAATTCTCCT	0.483													41	28					0	0	0.003214	0	0
CEACAM16	388551	broad.mit.edu	37	19	45211155	45211155	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:45211155C>T	uc010xxd.1	+	6	1169	c.963C>T	c.(961-963)ATC>ATT	p.I321I	CEACAM16_uc002ozq.2_Silent_p.I380I	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	321										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				CCACGATGATCGTGCCCGTGC	0.652													51	34					0	0	0.003610	0	0
BCAM	4059	broad.mit.edu	37	19	45322847	45322847	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:45322847C>T	uc002ozu.2	+	13	1671	c.1627C>T	c.(1627-1629)CAG>TAG	p.Q543*	BCAM_uc002ozt.1_Nonsense_Mutation_p.Q543*	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	543	Extracellular (Potential).				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				AGTGAGCCCCCAGACCTCCCA	0.667													51	33					0	0	0.003610	0	0
HIF3A	64344	broad.mit.edu	37	19	46832507	46832507	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:46832507C>T	uc002peh.2	+	12	1513	c.1484C>T	c.(1483-1485)TCC>TTC	p.S495F	HIF3A_uc002peg.3_Missense_Mutation_p.S495F|HIF3A_uc002pei.3_Missense_Mutation_p.S439F|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.S439F|HIF3A_uc010xxy.1_Missense_Mutation_p.S426F|HIF3A_uc002pel.2_Missense_Mutation_p.S493F|HIF3A_uc010xxz.1_Missense_Mutation_p.S444F	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	495	NTAD.|LAPYISMD.|ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCCTACATCTCCATGGATGAT	0.512													41	15					0	0	0.003610	0	0
GRIN2D	2906	broad.mit.edu	37	19	48908344	48908344	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:48908344C>T	uc002pjc.3	+	3	907	c.819C>T	c.(817-819)TTC>TTT	p.F273F		NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	273	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	ACGTCTGGTTCATGGTGGGGC	0.716													7	4					0	0	0.004482	0	0
NR1H2	7376	broad.mit.edu	37	19	50882435	50882435	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:50882435C>T	uc010enw.2	+	8	1203	c.927C>T	c.(925-927)ATC>ATT	p.I309I	NR1H2_uc002prv.3_RNA|NR1H2_uc002prz.3_Silent_p.I264I|NR1H2_uc002psa.3_Silent_p.I211I	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	308	Ligand-binding (Potential).				negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CATCCACTATCGAGGTAATGG	0.562													26	19					0	0	0.006320	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51628589	51628589	+	Missense_Mutation	SNP	C	T	T	rs147625837		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:51628589C>T	uc002pvu.2	+	1	425	c.358C>T	c.(358-360)CGT>TGT	p.R120C	SIGLEC9_uc010yct.1_Missense_Mutation_p.R120C	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	120	Extracellular (Potential).|Ig-like V-type.	Sialic acid (By similarity).		R->K: Loss of sialic acid binding.	cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		ATACTTCTTTCGTATGGAGAA	0.498													26	10					0	0	0.003330	0	0
CD33	945	broad.mit.edu	37	19	51728536	51728536	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:51728536G>A	uc002pwa.2	+	2	140	c.100G>A	c.(100-102)GGT>AGT	p.G34S	CD33_uc010eos.1_Missense_Mutation_p.G34S|CD33_uc010eot.1_Intron|CD33_uc010eou.1_5'Flank	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	34	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	GGTACAGGAGGGTTTGTGCGT	0.567													31	15					0	0	0.002445	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955837	51955837	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:51955837G>A	uc002pwt.2	-	7	1363	c.1296C>T	c.(1294-1296)CCC>CCT	p.P432P	SIGLEC8_uc010yda.1_Silent_p.P323P|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Silent_p.P339P	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	432	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CAACAGCTGGGGGAGGCTTCT	0.592													23	12					0	0	0.002299	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51958838	51958838	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:51958838C>T	uc002pwt.2	-	4	952	c.885G>A	c.(883-885)TGG>TGA	p.W295*	SIGLEC8_uc010yda.1_Nonsense_Mutation_p.W186*|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Nonsense_Mutation_p.W202*	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	295	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCCCCCGGGTCCAGCTCAGCC	0.632													24	9					0	0	0.002780	0	0
FPR1	2357	broad.mit.edu	37	19	52249761	52249761	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:52249761G>A	uc002pxq.2	-	2	582	c.487C>T	c.(487-489)CGT>TGT	p.R163C		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	163	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GTAGTCACACGAATGATAACT	0.537													22	13					0	0	0.002299	0	0
ZNF28	7576	broad.mit.edu	37	19	53303922	53303922	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:53303922G>A	uc002qad.2	-	4	1296	c.1176C>T	c.(1174-1176)TTC>TTT	p.F392F	ZNF28_uc002qac.2_Silent_p.F339F|ZNF28_uc010eqe.2_Silent_p.F338F	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	392	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		ATTTGCGACTGAAAACTTTTT	0.383													31	23					0	0	0.002445	0	0
ZNF765	91661	broad.mit.edu	37	19	53911743	53911743	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:53911743C>T	uc010ydx.1	+	6	1262	c.935C>T	c.(934-936)TCA>TTA	p.S312L	ZNF765_uc002qbm.2_Missense_Mutation_p.S312L|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	312	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		CATTTCAAATCAAAGCTTCAA	0.388													9	4					0	0	0.004482	0	0
NLRP12	91662	broad.mit.edu	37	19	54313804	54313804	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:54313804C>T	uc002qch.3	-	3	1329	c.1109G>A	c.(1108-1110)AGG>AAG	p.R370K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.R370K|NLRP12_uc002qcj.3_Missense_Mutation_p.R370K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.R370K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	370	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GTATTCCTTCCTTTCTGCCTC	0.542													77	46					0	0	0.003610	0	0
PRKCG	5582	broad.mit.edu	37	19	54395855	54395855	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:54395855C>T	uc002qcq.1	+	7	1061	c.779C>T	c.(778-780)TCC>TTC	p.S260F	PRKCG_uc010eqz.1_Missense_Mutation_p.S260F|PRKCG_uc010yef.1_Missense_Mutation_p.S260F|PRKCG_uc010yeg.1_Missense_Mutation_p.S260F|PRKCG_uc010yeh.1_Missense_Mutation_p.S147F	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	260	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GGGGCCATGTCCTTTGGCGTC	0.642													8	7					0	0	0.008291	0	0
LILRB5	10990	broad.mit.edu	37	19	54754699	54754699	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:54754699C>T	uc002qex.2	-	13	1835	c.1724G>A	c.(1723-1725)AGG>AAG	p.R575K	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_3'UTR|LILRB5_uc002qey.2_Missense_Mutation_p.R576K|LILRB5_uc002qez.2_Missense_Mutation_p.R476K|LILRB5_uc002qfa.1_3'UTR	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	575	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGGAGGTTCCCTTTCCTGGGA	0.607													35	12					0	0	0.003755	0	0
LILRB5	10990	broad.mit.edu	37	19	54760607	54760607	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:54760607C>T	uc002qex.2	-	3	211	c.100G>A	c.(100-102)GAG>AAG	p.E34K	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.E34K|LILRB5_uc002qey.2_Missense_Mutation_p.E34K|LILRB5_uc002qez.2_Missense_Mutation_p.E34K|LILRB5_uc002qfa.1_Missense_Mutation_p.E24K|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	34	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GAGGCTGGCTCAGCCCAGAGG	0.617													29	25					0	0	0.001786	0	0
LILRA1	11024	broad.mit.edu	37	19	55106176	55106176	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:55106176C>T	uc002qgh.1	+	4	299	c.117C>T	c.(115-117)ATC>ATT	p.I39I	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.I39I	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	39	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GCTCTGTGATCACCCAGGGGA	0.542													28	16					0	0	0.008361	0	0
LILRB1	10859	broad.mit.edu	37	19	55143946	55143946	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:55143946G>A	uc002qgj.2	+	7	1033	c.693G>A	c.(691-693)CAG>CAA	p.Q231Q	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.Q231Q|LILRB1_uc002qgk.2_Silent_p.Q231Q|LILRB1_uc002qgm.2_Silent_p.Q231Q|LILRB1_uc010erq.2_Silent_p.Q231Q|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	231	Ig-like C2-type 3.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCTCAGTGCAGCCAGGTCCTA	0.547										HNSCC(37;0.09)			39	18					0	0	0.002852	0	0
NLRP2	55655	broad.mit.edu	37	19	55493564	55493564	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:55493564G>A	uc002qij.2	+	6	584	c.498G>A	c.(496-498)ACG>ACA	p.T166T	NLRP2_uc010yfp.1_Silent_p.T143T|NLRP2_uc010esn.2_Silent_p.T142T|NLRP2_uc010eso.2_Silent_p.T163T|NLRP2_uc010esp.2_Silent_p.T144T	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	166					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TATTGAAGACGAAGTTCCGGG	0.473													117	48					0	0	0.003610	0	0
C19orf51	352909	broad.mit.edu	37	19	55670924	55670924	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:55670924C>T	uc002qji.1	-	11	1249	c.1215G>A	c.(1213-1215)GGG>GGA	p.G405G	TNNI3_uc002qjg.3_5'Flank|TNNI3_uc010yft.1_5'Flank|C19orf51_uc002qjh.1_Silent_p.G220G|C19orf51_uc002qjj.1_Silent_p.G452G|C19orf51_uc002qjk.1_Silent_p.G351G|C19orf51_uc002qjl.1_Silent_p.G472G			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	405											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		CAATCAAGTTCCCTCCGGGTG	0.587													40	27					0	0	0.003610	0	0
PTPRH	5794	broad.mit.edu	37	19	55693237	55693237	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:55693237C>T	uc002qjq.2	-	20	3306	c.3233G>A	c.(3232-3234)CGG>CAG	p.R1078Q	PTPRH_uc010esv.2_Missense_Mutation_p.R900Q|SYT5_uc002qjm.1_5'Flank|SYT5_uc002qjp.2_5'Flank|SYT5_uc002qjn.1_5'Flank|SYT5_uc002qjo.1_5'Flank	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	1078	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		TTGGAGGAACCGCAGGATGCA	0.627													26	20					0	0	0.005443	0	0
PTPRH	5794	broad.mit.edu	37	19	55716733	55716733	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:55716733C>T	uc002qjq.2	-	4	653	c.580G>A	c.(580-582)GGA>AGA	p.G194R	PTPRH_uc010esv.2_Intron|PTPRH_uc002qjs.2_Missense_Mutation_p.G201R	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	194	Fibronectin type-III 2.|Extracellular (Potential).				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CTGTTGATTCCATTCTTTCCC	0.522													30	26					0	0	0.002836	0	0
NLRP9	338321	broad.mit.edu	37	19	56243801	56243801	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:56243801G>A	uc002qly.2	-	2	1424	c.1396C>T	c.(1396-1398)CCT>TCT	p.P466S		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	466						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GCCGGGTTAGGATCGTCTTTG	0.478													43	24					0	0	0.003610	0	0
NLRP4	147945	broad.mit.edu	37	19	56388459	56388459	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:56388459G>A	uc002qmd.3	+	8	3045	c.2623G>A	c.(2623-2625)GAA>AAA	p.E875K	NLRP4_uc002qmf.2_Missense_Mutation_p.E800K|NLRP4_uc010etf.2_Missense_Mutation_p.E650K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	875	LRR 6.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TGGGTGCAATGAAATCGGAGA	0.493													46	34					0	0	0.003610	0	0
NLRP13	126204	broad.mit.edu	37	19	56410206	56410206	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:56410206C>T	uc010ygg.1	-	10	2912	c.2887G>A	c.(2887-2889)GAT>AAT	p.D963N		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	963	LRR 6.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCCTGAAGATCATTTTCTCCC	0.463													43	16					0	0	0.002222	0	0
NLRP13	126204	broad.mit.edu	37	19	56423089	56423089	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:56423089C>T	uc010ygg.1	-	5	2119	c.2094G>A	c.(2092-2094)AGG>AGA	p.R698R		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	698							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TTTCCAAGTCCCTTTCAAGGA	0.398													29	18					0	0	0.003755	0	0
NLRP8	126205	broad.mit.edu	37	19	56466901	56466901	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:56466901C>T	uc002qmh.2	+	3	1548	c.1477C>T	c.(1477-1479)CTT>TTT	p.L493F	NLRP8_uc010etg.2_Missense_Mutation_p.L493F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	493	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CATGAGTATTCTTCGGAGAAT	0.468													57	31					0	0	0.003610	0	0
ZNF582	147948	broad.mit.edu	37	19	56895360	56895360	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:56895360C>T	uc002qmz.1	-	5	1585	c.1426G>A	c.(1426-1428)GAA>AAA	p.E476K	ZNF582_uc002qmy.2_Missense_Mutation_p.E507K	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	476					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		ACATGTGTTTCTCTATTATGC	0.368													40	24					0	0	0.002852	0	0
ZNF460	10794	broad.mit.edu	37	19	57802418	57802418	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr19:57802418C>T	uc002qog.2	+	3	831	c.509C>T	c.(508-510)TCC>TTC	p.S170F	ZNF460_uc010ygv.1_Missense_Mutation_p.S129F	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGGGAAAATTCCTATAAATTC	0.408													42	15					0	0	0.008740	0	0
ACP1	52	broad.mit.edu	37	2	271865	271865	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:271865G>A	uc002qwg.2	+	2	140	c.44_splice	c.e2-1	p.G15_splice	ACP1_uc002qwd.2_Splice_Site_p.G15_splice|ACP1_uc002qwe.3_Splice_Site|ACP1_uc002qwh.2_Splice_Site|ACP1_uc002qwf.2_Splice_Site_p.G15_splice	NM_007099	NP_009030	P24666	PPAC_HUMAN	acid phosphatase 1, soluble isoform b							cytoplasm|internal side of plasma membrane|nucleus|soluble fraction	acid phosphatase activity|identical protein binding|non-membrane spanning protein tyrosine phosphatase activity			skin(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00175)|Lung NSC(108;0.216)|all_epithelial(98;0.236)		all cancers(51;0.000391)|Epithelial(75;0.00281)|OV - Ovarian serous cystadenocarcinoma(76;0.00542)|GBM - Glioblastoma multiforme(21;0.127)		TTTTTTTAAAGGTAACATTTG	0.448													46	49					0	0	0.003610	0	0
TPO	7173	broad.mit.edu	37	2	1500508	1500508	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:1500508G>A	uc002qww.2	+	13	2448	c.2357G>A	c.(2356-2358)GGA>GAA	p.G786E	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.G729E|TPO_uc002qwr.2_Missense_Mutation_p.G786E|TPO_uc002qwx.2_Missense_Mutation_p.G729E|TPO_uc010yio.1_Missense_Mutation_p.G613E|TPO_uc010yip.1_Missense_Mutation_p.G786E|TPO_uc002qwy.1_Missense_Mutation_p.G126E|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	786	Extracellular (Potential).|Sushi.				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	ACCCAGGAAGGATGGGATTTC	0.507													33	65					0	0	0.003755	0	0
PXDN	7837	broad.mit.edu	37	2	1653073	1653073	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:1653073G>A	uc002qxa.2	-	17	2543	c.2479C>T	c.(2479-2481)CAC>TAC	p.H827Y		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	827		Proton acceptor (By similarity).			extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCGAGGTCGTGGTCCAGGAAC	0.652													6	19					0	0	0.001168	0	0
ALLC	55821	broad.mit.edu	37	2	3726102	3726102	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:3726102G>A	uc010ewt.2	+	4	290	c.129G>A	c.(127-129)GGG>GGA	p.G43G		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	62							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		CGGAGTTTGGGAAATGGATGG	0.463										HNSCC(21;0.051)			9	26					0	0	0.006214	0	0
KCNF1	3754	broad.mit.edu	37	2	11053650	11053650	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:11053650C>T	uc002rax.2	+	1	1588	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	366						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GGGCCATCATCACCATGACCA	0.592													18	18					0	0	0.001523	0	0
GREB1	9687	broad.mit.edu	37	2	11732965	11732965	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:11732965C>T	uc002rbk.1	+	11	1709	c.1409C>T	c.(1408-1410)TCG>TTG	p.S470L	GREB1_uc002rbo.1_Missense_Mutation_p.S104L	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	470						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TGGCGCGAGTCGCACCTGACC	0.711													6	11					0	0	0.003080	0	0
SDC1	6382	broad.mit.edu	37	2	20402911	20402911	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:20402911G>A	uc002rdo.1	-	4	999	c.700C>T	c.(700-702)CCA>TCA	p.P234S	SDC1_uc002rdp.1_Missense_Mutation_p.P234S|SDC1_uc010exv.2_Intron	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	234	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		TGATCCACTGGGGACTGGTTC	0.612													29	27					0	0	0.002445	0	0
PUM2	23369	broad.mit.edu	37	2	20463139	20463139	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:20463139G>A	uc002rds.1	-	13	2063	c.2040C>T	c.(2038-2040)TCC>TCT	p.S680S	PUM2_uc002rdq.1_Silent_p.S57S|PUM2_uc002rdt.1_Silent_p.S680S|PUM2_uc002rdr.2_Silent_p.S540S|PUM2_uc010yjy.1_Silent_p.S601S|PUM2_uc002rdu.1_Silent_p.S680S|PUM2_uc010yjz.1_Silent_p.S619S	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	680	Ser-rich.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAAATAGACTGGAAGTGCTTG	0.458													12	52					0	0	0.000978	0	0
HS1BP3	64342	broad.mit.edu	37	2	20838326	20838326	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:20838326C>T	uc002rdw.1	-	4	534	c.493G>A	c.(493-495)GAG>AAG	p.E165K	HS1BP3_uc002rdx.2_Missense_Mutation_p.E165K	NM_022460	NP_071905	Q53T59	H1BP3_HUMAN	HCLS1 binding protein 3	165					cell communication		phosphatidylinositol binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCGAAAGCCTCTTCATCATTC	0.572													8	24					0	0	0.003080	0	0
APOB	338	broad.mit.edu	37	2	21225031	21225031	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:21225031G>A	uc002red.2	-	29	13391	c.13263C>T	c.(13261-13263)TTC>TTT	p.F4421F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4421					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATTCAGAATGGAAGTCCTTAA	0.363													96	337					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21229154	21229154	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:21229154G>A	uc002red.2	-	26	10714	c.10586C>T	c.(10585-10587)TCA>TTA	p.S3529L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3529					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGCTTCACTGAAGACCGTGT	0.438													132	420					0	0	0.003610	0	0
ITSN2	50618	broad.mit.edu	37	2	24535101	24535101	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:24535101G>A	uc002rfe.2	-	5	590	c.332C>T	c.(331-333)CCA>CTA	p.P111L	ITSN2_uc002rff.2_Missense_Mutation_p.P111L|ITSN2_uc002rfg.2_Missense_Mutation_p.P111L|ITSN2_uc010eyd.2_Missense_Mutation_p.P111L	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	111					endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAAATTAATGGAGAAAACAT	0.363													13	18					0	0	0.001855	0	0
OTOF	9381	broad.mit.edu	37	2	26699831	26699831	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:26699831C>A	uc002rhk.2	-	22	2731	c.2604G>T	c.(2602-2604)AAG>AAT	p.K868N	OTOF_uc002rhh.2_Missense_Mutation_p.K121N|OTOF_uc002rhi.2_Missense_Mutation_p.K178N|OTOF_uc002rhj.2_Missense_Mutation_p.K121N	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	868	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAGCAGGTCCTTGGAGGGCA	0.612													12	9					0.000978159	0.00134177	0.000978	1	0
TMEM214	54867	broad.mit.edu	37	2	27258870	27258870	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:27258870C>T	uc002ria.3	+	5	780	c.670C>T	c.(670-672)CAG>TAG	p.Q224*	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Nonsense_Mutation_p.Q179*	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	224						integral to membrane	protein binding				0						CATCTGTATCCAGGCCATCCT	0.517													9	32					0	0	0.006214	0	0
TCF23	150921	broad.mit.edu	37	2	27372135	27372135	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:27372135G>A	uc010ylg.1	+	1	134	c.134G>A	c.(133-135)TGG>TAG	p.W45*		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	45					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGGACCCGTGGGAAGAAAGA	0.637													6	2					0	0	0.001168	0	0
FAM179A	165186	broad.mit.edu	37	2	29259556	29259556	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:29259556C>T	uc010ezl.2	+	18	2919	c.2568C>T	c.(2566-2568)CTC>CTT	p.L856L	FAM179A_uc010ymm.1_Silent_p.L801L|FAM179A_uc002rmr.3_Silent_p.L383L|FAM179A_uc002rms.1_Silent_p.L154L	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	856							binding			ovary(3)|skin(1)	4						CAGACAACCTCAACTCCAAGA	0.582													11	15					0	0	0.003163	0	0
ALK	238	broad.mit.edu	37	2	29416472	29416472	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:29416472C>T	uc002rmy.2	-	29	5388	c.4481G>A	c.(4480-4482)GGA>GAA	p.G1494E	ALK_uc010ymo.1_Missense_Mutation_p.G426E	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1494	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GTTTCTGGATCCGTGGACCTT	0.527			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				43	51					0	0	0.003610	0	0
XDH	7498	broad.mit.edu	37	2	31606010	31606010	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:31606010A>C	uc002rnv.1	-	11	974	c.895T>G	c.(895-897)TTT>GTT	p.F299V		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	299	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GCAGCTCCAAAGGAGATACCT	0.388													10	29					0	0	0.000978	0	0
SPAST	6683	broad.mit.edu	37	2	32341264	32341264	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:32341264C>T	uc002roc.2	+	7	1302	c.1081C>T	c.(1081-1083)CCT>TCT	p.P361S	SPAST_uc002rod.2_Missense_Mutation_p.P329S	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	361	Sufficient for microtubule severing.		P -> L (in SPG4).		cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TGTTATTCTTCCTTCTCTGAG	0.333													20	34					0	0	0.001523	0	0
BIRC6	57448	broad.mit.edu	37	2	32710714	32710715	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:32710714_32710715GG>AT	uc010ezu.2	+	40	7835_7836	c.7701_7702GG>AT	c.(7699-7704)CTGGAT>CTATAT	p.D2568Y		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2568					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TTGTAGCCCTGGATGCTCGCCT	0.386													5	27					0	0	0.004672	0	0
BIRC6	57448	broad.mit.edu	37	2	32710717	32710717	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:32710717T>A	uc010ezu.2	+	40	7838	c.7704T>A	c.(7702-7704)GAT>GAA	p.D2568E		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2568					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TAGCCCTGGATGCTCGCCTAG	0.378													5	29					0	0	0.001984	0	0
LTBP1	4052	broad.mit.edu	37	2	33614277	33614277	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:33614277C>T	uc002ros.2	+	32	4741	c.4741C>T	c.(4741-4743)CCC>TCC	p.P1581S	LTBP1_uc002rot.2_Missense_Mutation_p.P1255S|LTBP1_uc002rou.2_Missense_Mutation_p.P1254S|LTBP1_uc002rov.2_Missense_Mutation_p.P1201S|LTBP1_uc010ymz.1_Missense_Mutation_p.P1212S|LTBP1_uc010yna.1_Missense_Mutation_p.P1159S|LTBP1_uc010ynb.1_Missense_Mutation_p.P478S	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1580					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GTGTAACATCCCCGTGACGGG	0.567													19	53					0	0	0.007413	0	0
LTBP1	4052	broad.mit.edu	37	2	33622339	33622339	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:33622339G>A	uc002ros.2	+	33	4977	c.4977G>A	c.(4975-4977)ATG>ATA	p.M1659I	LTBP1_uc002rot.2_Missense_Mutation_p.M1333I|LTBP1_uc002rou.2_Missense_Mutation_p.M1332I|LTBP1_uc002rov.2_Missense_Mutation_p.M1279I|LTBP1_uc010ymz.1_Missense_Mutation_p.M1290I|LTBP1_uc010yna.1_Missense_Mutation_p.M1237I|LTBP1_uc010ynb.1_Missense_Mutation_p.M556I	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1658					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CGGCCAAGATGACCTGTGTCG	0.448													9	62					0	0	0.006214	0	0
SLC8A1	6546	broad.mit.edu	37	2	40655980	40655980	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:40655980C>T	uc002rrx.2	-	1	1465	c.1441G>A	c.(1441-1443)GAT>AAT	p.D481N	SLC8A1_uc002rry.2_Missense_Mutation_p.D481N|SLC8A1_uc002rrz.2_Missense_Mutation_p.D481N|SLC8A1_uc002rsa.2_Missense_Mutation_p.D481N|SLC8A1_uc002rsd.3_Missense_Mutation_p.D481N|SLC8A1_uc002rsb.1_Missense_Mutation_p.D481N|SLC8A1_uc010fan.1_Missense_Mutation_p.D481N|SLC8A1_uc002rsc.1_Missense_Mutation_p.D481N	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	481	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ATATCATCATCTATGATACCC	0.418													13	18					0	0	0.001368	0	0
OXER1	165140	broad.mit.edu	37	2	42990069	42990069	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:42990069C>T	uc002rss.2	-	1	1333	c.1251G>A	c.(1249-1251)AAG>AAA	p.K417K		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	417	Cytoplasmic (Potential).				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						AGGAGCCTTCCTTTTCCAGAG	0.667													32	44					0	0	0.005524	0	0
ABCG8	64241	broad.mit.edu	37	2	44079492	44079493	+	Splice_Site	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:44079492_44079493GG>AA	uc002rtq.2	+	5	652	c.562_splice	c.e5-1	p.V188_splice	ABCG8_uc010yoa.1_Splice_Site_p.V188_splice	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8						cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CTGGCCCACAGGTGGAGGACGT	0.653													48	78					0	0	0.004672	0	0
ABCG8	64241	broad.mit.edu	37	2	44102291	44102292	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:44102291_44102292GG>TT	uc002rtq.2	+	11	1585_1586	c.1495_1496GG>TT	c.(1495-1497)GGG>TTG	p.G499L	ABCG8_uc010yoa.1_Missense_Mutation_p.G498L	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	499	ABC transmembrane type-2.|Helical; Name=3; (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCAGATCCTCGGGGAGCTTCCG	0.545													6	251					0	0	0.004672	0	0
MSH2	4436	broad.mit.edu	37	2	47639606	47639606	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:47639606C>T	uc002rvy.1	+	4	767	c.699C>T	c.(697-699)TCC>TCT	p.S233S	MSH2_uc010yoh.1_Silent_p.S167S|MSH2_uc002rvz.2_Silent_p.S233S|MSH2_uc010fbg.2_Silent_p.S93S|MSH2_uc010fbf.1_Silent_p.S140S	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	233					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding			large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTGACTTTTCCACAAAAGACA	0.353			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				14	28					0	0	0.002450	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807923	48807923	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:48807923C>T	uc010yol.1	+	1	198	c.151C>T	c.(151-153)CCC>TCC	p.P51S	STON1_uc002rwo.3_Missense_Mutation_p.P51S|STON1_uc010fbm.2_Missense_Mutation_p.P51S|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.P51S|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.P51S	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	51					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGGGAATTTCCCAGTGGATC	0.463													27	32					0	0	0.003954	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808114	48808114	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:48808114C>T	uc010yol.1	+	1	389	c.342C>T	c.(340-342)CTC>CTT	p.L114L	STON1_uc002rwo.3_Silent_p.L114L|STON1_uc010fbm.2_Silent_p.L114L|STON1-GTF2A1L_uc002rwp.1_Silent_p.L114L|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Silent_p.L114L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	114					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACAGCCCACTCGCAATATCAG	0.473													48	37					0	0	0.003610	0	0
GTF2A1L	11036	broad.mit.edu	37	2	48960051	48960051	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:48960051C>T	uc002rwt.2	+	9	1415	c.1349C>T	c.(1348-1350)TCG>TTG	p.S450L	LHCGR_uc002rwu.3_Intron|LHCGR_uc002rwv.2_Intron	NM_172196	NP_751946	Q9UNN4	TF2AY_HUMAN	general transcription factor IIA, 1-like isoform	Error:Variant_position_missing_in_Q9UNN4_after_alignment					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	transcription factor TFIIA complex	DNA binding|transcription coactivator activity				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGAAGGACATCGTTTAACACC	0.244													22	91					0	0	0.003954	0	0
FSHR	2492	broad.mit.edu	37	2	49190007	49190007	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:49190007G>A	uc002rww.2	-	10	2027	c.1953C>T	c.(1951-1953)GCC>GCT	p.A651A	FSHR_uc002rwx.2_Silent_p.A589A|FSHR_uc010fbn.2_Silent_p.A625A	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	651	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TATAAATTTGGGCTTGCATTT	0.473									Gonadal_Dysgenesis_46_XX				6	23					0	0	0.001984	0	0
PSME4	23198	broad.mit.edu	37	2	54101580	54101580	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:54101580G>A	uc002rxp.2	-	43	5052	c.4996C>T	c.(4996-4998)CAG>TAG	p.Q1666*	PSME4_uc010yop.1_Nonsense_Mutation_p.Q1552*|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Nonsense_Mutation_p.Q1041*|PSME4_uc010fbv.1_Nonsense_Mutation_p.Q810*|PSME4_uc010fbt.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1666	HEAT 5.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ACCATGGTCTGGAGGTAGGTC	0.378													17	24					0	0	0.007413	0	0
SPTBN1	6711	broad.mit.edu	37	2	54853249	54853249	+	Missense_Mutation	SNP	C	T	T	rs144666036		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:54853249C>T	uc002rxu.2	+	12	1771	c.1522C>T	c.(1522-1524)CGG>TGG	p.R508W	SPTBN1_uc002rxv.1_Missense_Mutation_p.R508W|SPTBN1_uc002rxx.2_Missense_Mutation_p.R495W	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	508	Spectrin 3.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CAATGTCATCCGGCTCTGGGA	0.572													20	57					0	0	0.001882	0	0
USP34	9736	broad.mit.edu	37	2	61528235	61528235	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:61528235G>A	uc002sbe.2	-	29	4001	c.3979C>T	c.(3979-3981)CCA>TCA	p.P1327S		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1327					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			CAAGATGCTGGCAGCTGAACA	0.403													82	107					0	0	0.003610	0	0
CEP68	23177	broad.mit.edu	37	2	65299154	65299155	+	Silent	DNP	AC	GT	GT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:65299154_65299155AC>GT	uc002sdl.3	+	3	1138_1139	c.924_925AC>GT	c.(922-927)CCACTG>CCGTTG	p.308_309PL>PL	CEP68_uc002sdj.2_Silent_p.308_309PL>PL|CEP68_uc010yqb.1_Silent_p.308_309PL>PL|CEP68_uc002sdk.3_Silent_p.308_309PL>PL|CEP68_uc010yqc.1_Silent_p.308_309PL>PL|CEP68_uc010yqd.1_Silent_p.308_309PL>PL	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	308_309					centrosome organization	centrosome				skin(1)	1						ATACTTACCCACTGAGGCCCGG	0.574													46	35					0	0	0.004672	0	0
ADD2	119	broad.mit.edu	37	2	70931469	70931469	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:70931469G>A	uc002sgz.2	-	4	771	c.306C>T	c.(304-306)TTC>TTT	p.F102F	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.F102F|ADD2_uc002sha.2_Silent_p.F102F|ADD2_uc002sgx.2_Silent_p.F102F|ADD2_uc010fdt.1_Silent_p.F102F|ADD2_uc002shc.1_Silent_p.F102F|ADD2_uc002shd.1_Silent_p.F102F|ADD2_uc010fdu.1_Silent_p.F118F	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	102					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						AAGATGTCGGGAAGACTGCGT	0.602													18	46					0	0	0.008871	0	0
CLEC4F	165530	broad.mit.edu	37	2	71044171	71044171	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:71044171G>A	uc002shf.2	-	4	419	c.342C>T	c.(340-342)TCC>TCT	p.S114S	CLEC4F_uc010yqv.1_Silent_p.S114S	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	114	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						CCCAGGCACTGGAATTCTCCA	0.502													29	29					0	0	0.007291	0	0
DYSF	8291	broad.mit.edu	37	2	71906329	71906329	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:71906329C>T	uc002sie.2	+	52	6286	c.5910C>T	c.(5908-5910)CCC>CCT	p.P1970P	DYSF_uc010feg.2_Silent_p.P2001P|DYSF_uc010feh.2_Silent_p.P1977P|DYSF_uc002sig.3_Silent_p.P1956P|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.P1991P|DYSF_uc010fef.2_Silent_p.P2008P|DYSF_uc010fei.2_Silent_p.P1987P|DYSF_uc010fek.2_Silent_p.P1988P|DYSF_uc010fej.2_Silent_p.P1978P|DYSF_uc010fel.2_Silent_p.P1957P|DYSF_uc010feo.2_Silent_p.P2002P|DYSF_uc010fem.2_Silent_p.P1992P|DYSF_uc010fen.2_Silent_p.P2009P|DYSF_uc002sif.2_Silent_p.P1971P|DYSF_uc010yqy.1_Silent_p.P851P|DYSF_uc010yqz.1_Silent_p.P731P	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1970	Cytoplasmic (Potential).		P -> S (in LGMD2B).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCTGGTGGCCCTGTGTAGCAG	0.512													20	19					0	0	0.008871	0	0
ALMS1	7840	broad.mit.edu	37	2	73717557	73717557	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:73717557C>T	uc002sje.1	+	12	8585	c.8474C>T	c.(8473-8475)CCC>CTC	p.P2825L	ALMS1_uc002sjf.1_Missense_Mutation_p.P2781L|ALMS1_uc002sjg.2_Missense_Mutation_p.P2211L|ALMS1_uc002sjh.1_Missense_Mutation_p.P2211L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2823					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CATTCTGAGCCCAGTACCAGG	0.403													5	24					0	0	0.000602	0	0
TTC31	64427	broad.mit.edu	37	2	74718726	74718727	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:74718726_74718727CC>TT	uc002slt.2	+	8	826_827	c.803_804CC>TT	c.(802-804)GCC>GTT	p.A268V	TTC31_uc002sls.2_Missense_Mutation_p.A197V|TTC31_uc010yrv.1_Intron|TTC31_uc002slu.2_Missense_Mutation_p.A124V	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	268							binding				0						AGGGGTCTGGCCCTCCAGAAGA	0.584													38	42					0	0	0.004672	0	0
CTNNA2	1496	broad.mit.edu	37	2	80101285	80101285	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:80101285C>T	uc010ysh.1	+	5	674	c.669C>T	c.(667-669)GCC>GCT	p.A223A	CTNNA2_uc010yse.1_Silent_p.A223A|CTNNA2_uc010ysf.1_Silent_p.A223A|CTNNA2_uc010ysg.1_Silent_p.A223A	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	223					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TGTACACGGCCTCTCAAGCAT	0.557													15	20					0	0	0.004007	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518063	84518063	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:84518063G>A	uc010ffz.1	+	1	258	c.121G>A	c.(121-123)GAA>AAA	p.E41K		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						ACTCTCAGCCGAAAAGTATAG	0.498													10	40					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	2	89326709	89326709	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:89326709C>T	uc010ytr.1	-	68		c.6469G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ACTGCAAAATCTTCAGGCTCT	0.498													18	50					0	0	0.001882	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95472168	95472168	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:95472168C>T	uc010fhp.2	-	16		c.2549G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GTCTGCATTTCCAAATACATT	0.264													39	34					0	0	0.002522	0	0
Unknown	0	broad.mit.edu	37	2	96646451	96646451	+	RNA	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:96646451G>A	uc010yug.1	-	5		c.761C>T								Homo sapiens cDNA FLJ54441 complete cds, highly similar to Homo sapiens ankyrin repeat domain 36 (ANKRD36), mRNA.																		TACACATCTCGAGAAAACACA	0.368													7	8					0	0	0.003080	0	0
ADRA2B	151	broad.mit.edu	37	2	96781405	96781405	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:96781405G>A	uc002svi.2	-	1	484	c.484C>T	c.(484-486)CCC>TCC	p.P162S		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	162	Extracellular (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	TTGCACTGGGGGCGCCCGCGC	0.617													8	27					0	0	0.003080	0	0
ADRA2B	151	broad.mit.edu	37	2	96781764	96781764	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:96781764G>A	uc002svi.2	-	1	125	c.125C>T	c.(124-126)TCG>TTG	p.S42L		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	42	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	GGCGCGCAGCGAGCGGCTGGT	0.637													10	11					0	0	0.006214	0	0
SNRNP200	23020	broad.mit.edu	37	2	96970545	96970546	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:96970545_96970546GG>AA	uc002svu.2	-	2	192_193	c.106_107CC>TT	c.(106-108)CCC>TTC	p.P36F		NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	36						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CTCTCCTGTGGGTTCATCCCGG	0.53													15	22					0	0	0.004672	0	0
ZAP70	7535	broad.mit.edu	37	2	98349462	98349462	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:98349462C>T	uc002syd.1	+	5	887	c.680C>T	c.(679-681)ACC>ATC	p.T227I	ZAP70_uc010yvf.1_Missense_Mutation_p.T227I|ZAP70_uc002sye.1_Missense_Mutation_p.T117I|ZAP70_uc002syf.1_5'Flank	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	227	SH2 2.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						CCCGAGGGCACCAAGTTTGAC	0.607													21	20					0	0	0.002299	0	0
IL18R1	8809	broad.mit.edu	37	2	103006552	103006552	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:103006552G>A	uc002tbw.3	+	9	1136	c.986G>A	c.(985-987)AGA>AAA	p.R329K	IL18R1_uc010ywc.1_Missense_Mutation_p.R328K|IL18R1_uc010ywd.1_Missense_Mutation_p.R173K|IL18R1_uc010fiy.2_Missense_Mutation_p.R329K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	329	Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GTCTTCACAAGAGGAATGATC	0.383													14	25					0	0	0.003163	0	0
SLC9A4	389015	broad.mit.edu	37	2	103095587	103095587	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:103095587G>A	uc002tbz.3	+	2	1003	c.546G>A	c.(544-546)CAG>CAA	p.Q182Q		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	182	Extracellular (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TCATCTGCCAGGTGAAGGCCT	0.617													6	29					0	0	0.001984	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149004	103149004	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:103149004C>T	uc002tbz.3	+	12	2711	c.2254C>T	c.(2254-2256)CAT>TAT	p.H752Y		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	752	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						ACCTCTGTTTCATGCAGTGGA	0.532													9	14					0	0	0.004482	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105924152	105924152	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:105924152G>A	uc002tcq.2	-	2	691	c.607C>T	c.(607-609)CCC>TCC	p.P203S	TGFBRAP1_uc002tcr.3_Missense_Mutation_p.P203S	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	203	CNH.				regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CTGCAGTAGGGAAACAGGTCC	0.607													34	81					0	0	0.003271	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460402	107460402	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:107460402C>T	uc002tdq.2	-	2	151	c.32G>A	c.(31-33)CGA>CAA	p.R11Q	ST6GAL2_uc002tdr.2_Missense_Mutation_p.R11Q|ST6GAL2_uc002tds.3_Missense_Mutation_p.R11Q	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	11	Cytoplasmic (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GAAAAGCATTCGTTGTCTCCA	0.507													10	36					0	0	0.000978	0	0
EDAR	10913	broad.mit.edu	37	2	109546583	109546583	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:109546583G>A	uc002teq.3	-	3	598	c.167C>T	c.(166-168)CCC>CTC	p.P56L	EDAR_uc010fjn.2_Missense_Mutation_p.P56L|EDAR_uc010yws.1_Missense_Mutation_p.P56L	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	56	TNFR-Cys 1.|Extracellular (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						TACCAGGTAGGGCTCCTCTCC	0.637													16	9					0	0	0.004990	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257055	114257055	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:114257055C>T	uc002tjw.3	+	1	395	c.222C>T	c.(220-222)ATC>ATT	p.I74I		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	74					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GAGAGCACATCGAGGGCGGCG	0.652													57	44					0	0	0.003610	0	0
STEAP3	55240	broad.mit.edu	37	2	120003076	120003077	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:120003076_120003077CC>TT	uc002tlp.2	+	3	161_162	c.4_5CC>TT	c.(4-6)CCA>TTA	p.P2L	STEAP3_uc002tlq.2_Missense_Mutation_p.P12L|STEAP3_uc002tlr.2_Missense_Mutation_p.P2L|STEAP3_uc010fle.2_Missense_Mutation_p.P2L	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	2	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						CACCAAAATGCCAGAAGAGATG	0.574													10	29					0	0	0.004672	0	0
STEAP3	55240	broad.mit.edu	37	2	120003228	120003228	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:120003228C>T	uc002tlp.2	+	3	313	c.156C>T	c.(154-156)TTC>TTT	p.F52F	STEAP3_uc002tlq.2_Silent_p.F62F|STEAP3_uc002tlr.2_Silent_p.F52F|STEAP3_uc010fle.2_Silent_p.F52F	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	52	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						GCTCTGGCTTCAAAGTGGTGG	0.652													14	11					0	0	0.002450	0	0
GLI2	2736	broad.mit.edu	37	2	121746677	121746677	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:121746677C>T	uc010flp.2	+	13	3217	c.3187C>T	c.(3187-3189)CCA>TCA	p.P1063S	GLI2_uc002tmq.1_Missense_Mutation_p.P735S|GLI2_uc002tmr.1_Missense_Mutation_p.P718S|GLI2_uc002tmt.3_Missense_Mutation_p.P735S|GLI2_uc002tmu.3_Missense_Mutation_p.P718S	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1063					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCTGGTGCTTCCAGACGACGT	0.672													15	34					0	0	0.008871	0	0
POTEF	728378	broad.mit.edu	37	2	130832241	130832241	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:130832241G>A	uc010fmh.2	-	17	3204	c.2804C>T	c.(2803-2805)TCC>TTC	p.S935F		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	935	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						CTTCTCTAGGGAGGAGCTGGA	0.622													14	19					0	0	0.006122	0	0
POTEF	728378	broad.mit.edu	37	2	130832282	130832282	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:130832282C>T	uc010fmh.2	-	17	3163	c.2763G>A	c.(2761-2763)CTG>CTA	p.L921L		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	921	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						GCTCGAAGTCCAGGGCAACAT	0.582													14	30					0	0	0.001882	0	0
LCT	3938	broad.mit.edu	37	2	136558221	136558221	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:136558221G>A	uc002tuu.1	-	12	4833	c.4822C>T	c.(4822-4824)CCC>TCC	p.P1608S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1608	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGGTTAGAGGGATCTCTGGGT	0.532													8	39					0	0	0.003080	0	0
THSD7B	80731	broad.mit.edu	37	2	137814169	137814169	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:137814169G>A	uc002tva.1	+	2	226	c.226G>A	c.(226-228)GAG>AAG	p.E76K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTTTCAGTGGGAGGTTTCTGA	0.537													20	12					0	0	0.008871	0	0
THSD7B	80731	broad.mit.edu	37	2	138329995	138329995	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:138329995G>A	uc002tva.1	+	16	3205	c.3205G>A	c.(3205-3207)GGT>AGT	p.G1069S	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TACTGCGGATGGTGAAGGTGG	0.403													15	12					0	0	0.004007	0	0
LRP1B	53353	broad.mit.edu	37	2	141143569	141143569	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:141143569G>A	uc002tvj.1	-	67	11396	c.10424C>T	c.(10423-10425)ACT>ATT	p.T3475I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3475	Extracellular (Potential).|LDL-receptor class A 25.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGGTCCACAAGTCTTTTTATC	0.413										TSP Lung(27;0.18)			46	35					0	0	0.003610	0	0
LRP1B	53353	broad.mit.edu	37	2	141641523	141641523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:141641523C>T	uc002tvj.1	-	25	5004	c.4032G>A	c.(4030-4032)TGG>TGA	p.W1344*	LRP1B_uc010fnl.1_Nonsense_Mutation_p.W526*	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1344	Extracellular (Potential).|LDL-receptor class B 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCCTGCTATCCAGTCGACTG	0.488										TSP Lung(27;0.18)			39	58					0	0	0.002522	0	0
LRP1B	53353	broad.mit.edu	37	2	141762966	141762966	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:141762966C>T	uc002tvj.1	-	15	3413	c.2441G>A	c.(2440-2442)GGA>GAA	p.G814E	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	814	Extracellular (Potential).|EGF-like 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CACCCGGCCTCCTGGGATAGC	0.438										TSP Lung(27;0.18)			19	21					0	0	0.007413	0	0
KYNU	8942	broad.mit.edu	37	2	143713832	143713832	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:143713832C>T	uc002tvl.2	+	6	626	c.496C>T	c.(496-498)CCT>TCT	p.P166S	KYNU_uc002tvk.2_Missense_Mutation_p.P166S|KYNU_uc010fnm.2_Missense_Mutation_p.P166S	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	166	Pyridoxal phosphate binding.				anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	CAAAGCCTTCCCTTCTGATCA	0.338													5	23					0	0	0.001168	0	0
NEB	4703	broad.mit.edu	37	2	152512943	152512943	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:152512943C>T	uc010fnx.2	-	49	6410	c.6219G>A	c.(6217-6219)GGG>GGA	p.G2073G		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2073					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAACCATTTTCCCCTTCCCTT	0.373													52	45					0	0	0.003610	0	0
NEB	4703	broad.mit.edu	37	2	152541387	152541387	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:152541387C>T	uc010fnx.2	-	28	2931	c.2740G>A	c.(2740-2742)GAC>AAC	p.D914N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	914	Nebulin 21.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TAATCAACGTCGCTGGCAATT	0.443													17	8					0	0	0.004990	0	0
CACNB4	785	broad.mit.edu	37	2	152739857	152739857	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:152739857G>A	uc002tya.2	-	3	243	c.175C>T	c.(175-177)CCG>TCG	p.P59S	CACNB4_uc002txy.2_Missense_Mutation_p.P25S|CACNB4_uc002txz.2_Missense_Mutation_p.P41S|CACNB4_uc010fnz.2_Missense_Mutation_p.P59S|CACNB4_uc002tyb.2_Missense_Mutation_p.P25S	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	59					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	GAGTCAGACGGCCTGCTTGTG	0.468													40	40					0	0	0.003610	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555961	155555961	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:155555961C>T	uc002tyv.1	+	1	869	c.674C>T	c.(673-675)TCC>TTC	p.S225F	KCNJ3_uc010zce.1_Missense_Mutation_p.S225F	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	225	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CACATGGTCTCCGCGCAGATT	0.607													7	5					0	0	0.003080	0	0
BAZ2B	29994	broad.mit.edu	37	2	160310159	160310159	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:160310159G>A	uc002uao.2	-	4	651	c.299C>T	c.(298-300)GCC>GTC	p.A100V	BAZ2B_uc002uap.2_Missense_Mutation_p.A100V|BAZ2B_uc002uas.1_Intron|BAZ2B_uc002uau.1_Missense_Mutation_p.A100V|BAZ2B_uc002uaq.1_Missense_Mutation_p.A30V|BAZ2B_uc002uat.3_Intron|BAZ2B_uc010fop.1_Missense_Mutation_p.A100V	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TGCGGCTAAGGCTGTGGGTGT	0.478													5	34					0	0	0.001168	0	0
DPP4	1803	broad.mit.edu	37	2	162868390	162868390	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:162868390C>T	uc002ubz.2	-	20	2306	c.1745G>A	c.(1744-1746)GGA>GAA	p.G582E	DPP4_uc010fpb.2_Missense_Mutation_p.G258E	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	582	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	GTAACCACTTCCTCTGCCATC	0.443													34	34					0	0	0.005524	0	0
DPP4	1803	broad.mit.edu	37	2	162881449	162881449	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:162881449C>T	uc002ubz.2	-	11	1449	c.888G>A	c.(886-888)GGG>GGA	p.G296G	DPP4_uc010fpb.2_5'UTR	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	296	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	AGTAGTGATCCCTggaaggaa	0.318													27	18					0	0	0.004656	0	0
DPP4	1803	broad.mit.edu	37	2	162894889	162894889	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:162894889T>C	uc002ubz.2	-	8	1097	c.536A>G	c.(535-537)AAT>AGT	p.N179S	DPP4_uc010fpb.2_5'UTR|DPP4_uc002uca.1_RNA|DPP4_uc002ucb.1_RNA	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	179	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	ACTTGGTAAATTTGGTTCAAT	0.299													15	22					0	0	0.003163	0	0
SCN3A	6328	broad.mit.edu	37	2	165947758	165947758	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:165947758G>A	uc002ucx.2	-	28	5397	c.4905C>T	c.(4903-4905)ATC>ATT	p.I1635I	SCN3A_uc010zcy.1_Silent_p.I118I|SCN3A_uc002ucy.2_Silent_p.I1586I|SCN3A_uc002ucz.2_Silent_p.I1586I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1635	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTGCTCCTTTGATCAGACGTA	0.483													33	41					0	0	0.003271	0	0
SCN3A	6328	broad.mit.edu	37	2	165972057	165972057	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:165972057C>T	uc002ucx.2	-	19	3914	c.3422G>A	c.(3421-3423)GGA>GAA	p.G1141E	SCN3A_uc002ucy.2_Missense_Mutation_p.G1092E|SCN3A_uc002ucz.2_Missense_Mutation_p.G1092E|SCN3A_uc002uda.1_Missense_Mutation_p.G961E|SCN3A_uc002udb.1_Missense_Mutation_p.G961E	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1141						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AACTGTGCTTCCTTCAGATGA	0.393													21	22					0	0	0.003330	0	0
CSRNP3	80034	broad.mit.edu	37	2	166536033	166536033	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:166536033G>A	uc002udf.2	+	7	1904	c.1528G>A	c.(1528-1530)GAT>AAT	p.D510N	CSRNP3_uc002udg.2_Missense_Mutation_p.D510N	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	510					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TTCCGAAAATGATAGCGGTGT	0.502													18	17					0	0	0.008871	0	0
SCN1A	6323	broad.mit.edu	37	2	166868727	166868727	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:166868727C>T	uc010zcz.1	-	19	3756	c.3738G>A	c.(3736-3738)AAG>AAA	p.K1246K	SCN1A_uc002udo.3_Silent_p.K1126K|SCN1A_uc010fpk.2_Silent_p.K1098K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1257	Helical; Name=S2 of repeat III; (By similarity).|III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AAGTGAAAACCTTGTCAGCAT	0.343													5	6					0	0	0.000602	0	0
SCN1A	6323	broad.mit.edu	37	2	166901716	166901716	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:166901716C>T	uc010zcz.1	-	10	1517	c.1499G>A	c.(1498-1500)CGG>CAG	p.R500Q	SCN1A_uc002udo.3_Missense_Mutation_p.R369Q|SCN1A_uc010fpk.2_Missense_Mutation_p.R369Q	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	500						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTTCTTCCTCCGATTTCTTCT	0.463													61	63					0	0	0.003610	0	0
SCN7A	6332	broad.mit.edu	37	2	167262975	167262975	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:167262975G>A	uc002udu.1	-	25	4291	c.4164C>T	c.(4162-4164)TTC>TTT	p.F1388F		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1388	Helical; Name=S5 of repeat IV; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACATGACCAGGAAGATGAGAA	0.378													14	36					0	0	0.001855	0	0
XIRP2	129446	broad.mit.edu	37	2	168102277	168102277	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:168102277C>T	uc002udx.2	+	8	4393	c.4375C>T	c.(4375-4377)CAC>TAC	p.H1459Y	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H1284Y|XIRP2_uc010fpq.2_Missense_Mutation_p.H1237Y|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1284	Xin 26.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATTTGAAACCCACACTATGGA	0.363													4	21					0	0	0.000248	0	0
XIRP2	129446	broad.mit.edu	37	2	168103996	168103996	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:168103996C>T	uc002udx.2	+	8	6112	c.6094C>T	c.(6094-6096)CGT>TGT	p.R2032C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R1857C|XIRP2_uc010fpq.2_Missense_Mutation_p.R1810C|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1857					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGTCATAGATCGTGAACAAAA	0.388													10	13					0	0	0.002450	0	0
B3GALT1	8708	broad.mit.edu	37	2	168725897	168725897	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:168725897C>T	uc002udz.1	+	2	699	c.348C>T	c.(346-348)TTC>TTT	p.F116F		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	116	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						CCACCCTGTTCCTCCTGGGCA	0.488													8	30					0	0	0.004482	0	0
LASS6	253782	broad.mit.edu	37	2	169551552	169551552	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:169551552C>T	uc002ueb.1	+	6	724	c.600C>T	c.(598-600)ATC>ATT	p.I200I	LASS6_uc002uec.1_Silent_p.I200I	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	200	Lumenal (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						TCACTGATATCAAAAGAAAGG	0.428													17	26					0	0	0.006122	0	0
DHRS9	10170	broad.mit.edu	37	2	169939917	169939917	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:169939917G>A	uc002uep.2	+	6	1896	c.392G>A	c.(391-393)AGA>AAA	p.R131K	DHRS9_uc002ueq.2_Missense_Mutation_p.R131K|DHRS9_uc010zdc.1_Missense_Mutation_p.R191K|DHRS9_uc010zdd.1_Missense_Mutation_p.R131K|DHRS9_uc010zde.1_Missense_Mutation_p.R131K	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	131					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						GAGGACTACAGAGAACCTATT	0.468													8	47					0	0	0.004482	0	0
LRP2	4036	broad.mit.edu	37	2	170076989	170076989	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:170076989C>T	uc002ues.2	-	34	5836	c.5623G>A	c.(5623-5625)GGC>AGC	p.G1875S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1875	Extracellular (Potential).|LDL-receptor class B 16.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ACAGTTATGCCAATTGGAAAG	0.418													15	24					0	0	0.004990	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173891899	173891899	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:173891899C>T	uc002uhv.3	+	25	2657	c.2470C>T	c.(2470-2472)CAG>TAG	p.Q824*	RAPGEF4_uc002uhw.3_Nonsense_Mutation_p.Q680*	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	824	Ras-GEF.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			TAATGAAATTCAGTTTTGGGT	0.358													15	71					0	0	0.002450	0	0
ZAK	51776	broad.mit.edu	37	2	174130904	174130904	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:174130904C>T	uc002uhz.2	+	20	2029	c.1829C>T	c.(1828-1830)TCC>TTC	p.S610F	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	610					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			GGCCAGGATTCCTACGCTGCT	0.517													13	15					0	0	0.001855	0	0
CDCA7	83879	broad.mit.edu	37	2	174229714	174229714	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:174229714G>A	uc002uid.1	+	5	785	c.654G>A	c.(652-654)ATG>ATA	p.M218I	CDCA7_uc002uic.1_Missense_Mutation_p.M297I|CDCA7_uc010zej.1_Missense_Mutation_p.M253I|CDCA7_uc010zek.1_Missense_Mutation_p.M176I	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	218					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			ATGGCTACATGAATGTGAGTT	0.522													6	19					0	0	0.001984	0	0
GPR155	151556	broad.mit.edu	37	2	175300867	175300867	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:175300867G>A	uc002uit.2	-	17	2981	c.2590C>T	c.(2590-2592)CCC>TCC	p.P864S	GPR155_uc002uiu.2_Missense_Mutation_p.P864S|GPR155_uc002uiv.2_Missense_Mutation_p.P864S|GPR155_uc010fqs.2_Missense_Mutation_p.P836S	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	864					intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						GAATGTGAGGGTGGGGATGAA	0.363													9	32					0	0	0.006214	0	0
OSBPL6	114880	broad.mit.edu	37	2	179213955	179213955	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179213955C>T	uc002ulx.2	+	12	1370	c.992C>T	c.(991-993)CCT>CTT	p.P331L	OSBPL6_uc002ulw.2_Missense_Mutation_p.P300L|OSBPL6_uc002uly.2_Missense_Mutation_p.P356L|OSBPL6_uc010zfe.1_Missense_Mutation_p.P300L|OSBPL6_uc002ulz.2_Missense_Mutation_p.P331L|OSBPL6_uc002uma.2_Missense_Mutation_p.P335L	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	331					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TTTCAGGTTCCTTTCAGTGCT	0.433													59	44					0	0	0.003610	0	0
OSBPL6	114880	broad.mit.edu	37	2	179214106	179214106	+	Silent	SNP	C	T	T	rs139699722		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179214106C>T	uc002ulx.2	+	12	1521	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	OSBPL6_uc002ulw.2_Silent_p.I350I|OSBPL6_uc002uly.2_Silent_p.I406I|OSBPL6_uc010zfe.1_Silent_p.I350I|OSBPL6_uc002ulz.2_Silent_p.I381I|OSBPL6_uc002uma.2_Silent_p.I385I	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	381					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TTTGTCTAATCGCACAGAAAG	0.368													8	44					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179393049	179393049	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179393049T>A	uc010zfg.1	-	310	99849	c.99625A>T	c.(99625-99627)AAA>TAA	p.K33209*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.K26904*|TTN_uc010zfi.1_Nonsense_Mutation_p.K26837*|TTN_uc010zfj.1_Nonsense_Mutation_p.K26712*|TTN_uc002umq.2_Nonsense_Mutation_p.K226*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34136							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGAAATTTTTGGCCTTAATT	0.423													11	34					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179428764	179428764	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179428764C>T	uc010zfg.1	-	275	74615	c.74391G>A	c.(74389-74391)AAG>AAA	p.K24797K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K18492K|TTN_uc010zfi.1_Silent_p.K18425K|TTN_uc010zfj.1_Silent_p.K18300K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25724							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTCAAGTACCTTTACAGTGA	0.458													18	73					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179433511	179433511	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179433511C>T	uc010zfg.1	-	275	69868	c.69644G>A	c.(69643-69645)CGG>CAG	p.R23215Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R16910Q|TTN_uc010zfi.1_Missense_Mutation_p.R16843Q|TTN_uc010zfj.1_Missense_Mutation_p.R16718Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24142							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCAAGGGACCGAGGATCACT	0.413													14	21					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179436997	179436997	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179436997C>T	uc010zfg.1	-	275	66382	c.66158G>A	c.(66157-66159)GGA>GAA	p.G22053E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G15748E|TTN_uc010zfi.1_Missense_Mutation_p.G15681E|TTN_uc010zfj.1_Missense_Mutation_p.G15556E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22980							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTATTTTTCCTGGAGGAAG	0.458													17	14					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179440027	179440027	+	Missense_Mutation	SNP	G	A	A	rs72646891	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179440027G>A	uc010zfg.1	-	275	63352	c.63128C>T	c.(63127-63129)GCG>GTG	p.A21043V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A14738V|TTN_uc010zfi.1_Missense_Mutation_p.A14671V|TTN_uc010zfj.1_Missense_Mutation_p.A14546V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21970							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTCTCCCCGCGCTGTTCAC	0.498													13	15					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179458165	179458165	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179458165T>A	uc010zfg.1	-	248	51290	c.51066A>T	c.(51064-51066)GAA>GAT	p.E17022D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E10717D|TTN_uc010zfi.1_Missense_Mutation_p.E10650D|TTN_uc010zfj.1_Missense_Mutation_p.E10525D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17949							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGGTAACTTCTGTAACAA	0.363													24	20					0	0	0.003954	0	0
TTN	7273	broad.mit.edu	37	2	179479601	179479601	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179479601C>T	uc010zfg.1	-	209	41253	c.41029G>A	c.(41029-41031)GAG>AAG	p.E13677K	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E7372K|TTN_uc010zfi.1_Missense_Mutation_p.E7305K|TTN_uc010zfj.1_Missense_Mutation_p.E7180K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14604							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGATTTCCTCTGTGGGTCTG	0.363													4	2					0	0	0.000248	0	0
TTN	7273	broad.mit.edu	37	2	179606404	179606404	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179606404C>T	uc010zfh.1	-	46	11267	c.11043G>A	c.(11041-11043)CAG>CAA	p.Q3681Q	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.Q3614Q|TTN_uc010zfj.1_Silent_p.Q3489Q|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAAGAACCACTGAATTTTAG	0.413													33	44					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179615915	179615915	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179615915C>T	uc002unb.2	-	46	11436	c.11212G>A	c.(11212-11214)GAT>AAT	p.D3738N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATCTTTATCACTAGCTTCA	0.338													9	15					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179621414	179621414	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179621414C>T	uc010zfh.1	-	44	10500	c.10276G>A	c.(10276-10278)GAA>AAA	p.E3426K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3451							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTAATTTCCTTTTGAGAT	0.408													17	27					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179642597	179642597	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179642597G>A	uc010zfg.1	-	25	4538	c.4314C>T	c.(4312-4314)TCC>TCT	p.S1438S	TTN_uc010zfh.1_Silent_p.S1392S|TTN_uc010zfi.1_Silent_p.S1392S|TTN_uc010zfj.1_Silent_p.S1392S|TTN_uc002unb.2_Silent_p.S1438S|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1438							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACGTCCAGGGGACATTCTTG	0.488													29	35					0	0	0.002096	0	0
CCDC141	285025	broad.mit.edu	37	2	179720995	179720995	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179720995C>T	uc002unf.1	-	8	1186	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	377	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TGCATTTTTTCAGCATACATA	0.294													32	31					0	0	0.004878	0	0
CCDC141	285025	broad.mit.edu	37	2	179736979	179736979	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:179736979C>T	uc002unf.1	-	3	292	c.235G>A	c.(235-237)GAA>AAA	p.E79K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	79	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTCTGGTTTTCCATGGTGTTC	0.423													21	26					0	0	0.002299	0	0
SSFA2	6744	broad.mit.edu	37	2	182784145	182784145	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:182784145C>T	uc002uoi.2	+	14	3438	c.3116C>T	c.(3115-3117)CCT>CTT	p.P1039L	SSFA2_uc002uoh.2_Missense_Mutation_p.P1039L|SSFA2_uc002uoj.2_Missense_Mutation_p.P1039L|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.P886L|SSFA2_uc002uol.2_Missense_Mutation_p.P886L|SSFA2_uc002uom.2_Missense_Mutation_p.P507L	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	1039						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GTGCGCATGCCTTCACCCTTC	0.532													54	66					0	0	0.003610	0	0
PDE1A	5136	broad.mit.edu	37	2	183070750	183070750	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:183070750C>T	uc002uos.2	-	9	951	c.867G>A	c.(865-867)GAG>GAA	p.E289E	PDE1A_uc010zfp.1_Silent_p.E185E|PDE1A_uc002uoq.1_Silent_p.E289E|PDE1A_uc010zfq.1_Silent_p.E289E|PDE1A_uc002uor.2_Silent_p.E273E|PDE1A_uc002uou.2_Silent_p.E255E	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	289	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			CGTGGTGATTCTCAAGGACAG	0.358													10	9					0	0	0.006214	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802939	185802939	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:185802939G>A	uc002uph.2	+	4	3410	c.2816G>A	c.(2815-2817)AGA>AAA	p.R939K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	939						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CACAAAGAAAGAAGTGAGAAT	0.378													13	29					0	0	0.001368	0	0
ITGAV	3685	broad.mit.edu	37	2	187533579	187533579	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:187533579C>T	uc002upq.2	+	25	2800	c.2524C>T	c.(2524-2526)CTT>TTT	p.L842F	ITGAV_uc010frs.2_Missense_Mutation_p.L806F|ITGAV_uc010zfv.1_Missense_Mutation_p.L796F	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	842	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		GTTGTATATCCTTCATTATGA	0.363													14	52					0	0	0.002450	0	0
FAM171B	165215	broad.mit.edu	37	2	187627229	187627229	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:187627229C>T	uc002ups.2	+	8	2272	c.2160C>T	c.(2158-2160)CTC>CTT	p.L720L	FAM171B_uc002upr.1_Silent_p.L687L|FAM171B_uc002upt.2_Silent_p.L189L	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	720	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						GTAGAAAGCTCGAGAGGGAGA	0.458													13	25					0	0	0.001368	0	0
ANKAR	150709	broad.mit.edu	37	2	190554621	190554621	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:190554621C>T	uc002uqw.1	+	2	757	c.757C>T	c.(757-759)CCA>TCA	p.P253S	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqv.1_Missense_Mutation_p.P324S	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	324	Helical; (Potential).					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			TTTTCTGATTCCATTTCTACT	0.274													15	64					0	0	0.003163	0	0
MFSD6	54842	broad.mit.edu	37	2	191364880	191364880	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:191364880G>A	uc002urz.2	+	8	2636	c.2312G>A	c.(2311-2313)AGT>AAT	p.S771N	MFSD6_uc010zge.1_Missense_Mutation_p.S233N	NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	771					transmembrane transport	integral to membrane				ovary(2)	2						GCTCACCCCAGTGTGGACCCG	0.617													10	43					0	0	0.008291	0	0
SDPR	8436	broad.mit.edu	37	2	192701120	192701120	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:192701120C>T	uc002utb.2	-	2	1137	c.807G>A	c.(805-807)GAG>GAA	p.E269E		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	269						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TCTTAATCTTCTCTCTCCTCT	0.443													94	116					0	0	0.003610	0	0
DNAH7	56171	broad.mit.edu	37	2	196723507	196723507	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:196723507C>T	uc002utj.3	-	43	7859	c.7758G>A	c.(7756-7758)AAG>AAA	p.K2586K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2586	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTTCATATCTCTTTTTCATTT	0.373													27	33					0	0	0.006320	0	0
DNAH7	56171	broad.mit.edu	37	2	196740494	196740495	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:196740494_196740495CT>TC	uc002utj.3	-	38	6291_6292	c.6190_6191AG>GA	c.(6190-6192)AGA>GAA	p.R2064E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2064	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TAACCACTGTCTAAGTAACTCA	0.436													8	25					0	0	0.004672	0	0
DNAH7	56171	broad.mit.edu	37	2	196825151	196825151	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:196825151C>T	uc002utj.3	-	18	2825	c.2724G>A	c.(2722-2724)ATG>ATA	p.M908I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	908	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACTCAGTAATCATCTTCTCCA	0.368													17	74					0	0	0.004007	0	0
DNAH7	56171	broad.mit.edu	37	2	196913086	196913086	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:196913086G>A	uc002utj.3	-	4	285	c.184C>T	c.(184-186)CAT>TAT	p.H62Y		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	62	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACACTCAAATGGAATGATGGA	0.348													28	38					0	0	0.002096	0	0
HECW2	57520	broad.mit.edu	37	2	197183420	197183420	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:197183420C>T	uc002utm.1	-	9	2377	c.2194G>A	c.(2194-2196)GAG>AAG	p.E732K	HECW2_uc002utl.1_Missense_Mutation_p.E376K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	732					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TCCCCCAGCTCCTCCTGGTCA	0.652													8	18					0	0	0.003080	0	0
SF3B1	23451	broad.mit.edu	37	2	198257176	198257176	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:198257176G>A	uc002uue.2	-	25	3814	c.3766C>T	c.(3766-3768)CAC>TAC	p.H1256Y		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	1256					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CGGGCTGGGTGAAACAGACCC	0.328													8	10					0	0	0.003080	0	0
AOX1	316	broad.mit.edu	37	2	201502954	201502954	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:201502954C>T	uc002uvx.2	+	23	2598	c.2497C>T	c.(2497-2499)CGC>TGC	p.R833C	AOX1_uc010zhf.1_Missense_Mutation_p.R389C|AOX1_uc010fsu.2_Missense_Mutation_p.R199C	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	833					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CCGTGCAGTTCGCTGTGTTCT	0.458													47	52					0	0	0.003610	0	0
ALS2	57679	broad.mit.edu	37	2	202593804	202593804	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:202593804A>G	uc002uyo.2	-	14	3039	c.2683T>C	c.(2683-2685)TTC>CTC	p.F895L	ALS2_uc002uyp.3_Missense_Mutation_p.F895L|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	895					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						GTCTTCCAGAAGCCCAGTGTG	0.433													62	70					0	0	0.003610	0	0
CTLA4	1493	broad.mit.edu	37	2	204737458	204737458	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:204737458G>A	uc002vak.1	+	4	752	c.595G>A	c.(595-597)GGG>AGG	p.G199R	CTLA4_uc002val.1_Missense_Mutation_p.R162K|CTLA4_uc010fty.1_Missense_Mutation_p.R67K|CTLA4_uc010ftz.1_RNA	NM_005214	NP_005205	P16410	CTLA4_HUMAN	cytotoxic T-lymphocyte-associated protein 4	199	Cytoplasmic (Potential).				B cell receptor signaling pathway|immune response|negative regulation of B cell proliferation|negative regulation of regulatory T cell differentiation|positive regulation of apoptosis|response to DNA damage stimulus|T cell costimulation	clathrin-coated endocytic vesicle|external side of plasma membrane|Golgi apparatus|integral to plasma membrane|perinuclear region of cytoplasm					0					Abatacept(DB01281)	TCTTACAACAGGGGTCTATGT	0.378													16	19					0	0	0.006122	0	0
INO80D	54891	broad.mit.edu	37	2	206869260	206869260	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:206869260G>A	uc002vaz.3	-	11	3321	c.2916C>T	c.(2914-2916)CTC>CTT	p.L972L		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	Error:Variant_position_missing_in_Q53TQ3_after_alignment					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						TGAACTGAGGGAGTTGCTGCT	0.592													7	6					0	0	0.004482	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170151	207170151	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:207170151T>G	uc002vbp.2	+	5	1149	c.899T>G	c.(898-900)GTT>GGT	p.V300G		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	300							nucleic acid binding|zinc ion binding			ovary(3)	3						TCCTTAAGAGTTAAATCTCCT	0.368													9	14					0	0	0.008291	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172122	207172122	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:207172122G>A	uc002vbp.2	+	5	3120	c.2870G>A	c.(2869-2871)AGT>AAT	p.S957N		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	957							nucleic acid binding|zinc ion binding			ovary(3)	3						TTTGAAACAAGTTTGGATTCT	0.388													9	26					0	0	0.004482	0	0
SLC11A1	6556	broad.mit.edu	37	2	219254608	219254608	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:219254608C>T	uc002vhv.2	+	9	1151	c.811C>T	c.(811-813)CGG>TGG	p.R271W	SLC11A1_uc010fvp.1_Missense_Mutation_p.R271W|SLC11A1_uc010fvq.1_Missense_Mutation_p.R204W|SLC11A1_uc010zkc.1_Missense_Mutation_p.R204W|SLC11A1_uc002vhu.1_Missense_Mutation_p.R66W|SLC11A1_uc002vhw.2_Missense_Mutation_p.R153W|SLC11A1_uc010fvr.2_Missense_Mutation_p.R66W	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	271	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGAGATAGACCGGGCCCGCCG	0.547													6	16					0	0	0.001168	0	0
VIL1	7429	broad.mit.edu	37	2	219289047	219289047	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:219289047C>T	uc002via.2	+	3	188	c.123C>T	c.(121-123)TTC>TTT	p.F41F	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Silent_p.F41F|VIL1_uc002vic.1_Silent_p.F41F	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	41	Gelsolin-like 1.|Core.|Necessary for homodimerization.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAAGCTTCTTCGATGGTGACT	0.592													25	79					0	0	0.005443	0	0
USP37	57695	broad.mit.edu	37	2	219411703	219411703	+	Missense_Mutation	SNP	G	A	A	rs139468408		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:219411703G>A	uc002vie.2	-	7	994	c.541C>T	c.(541-543)CGG>TGG	p.R181W	USP37_uc010fvs.1_Missense_Mutation_p.R181W|USP37_uc010zkf.1_Missense_Mutation_p.R181W|USP37_uc002vif.2_Missense_Mutation_p.R181W|USP37_uc002vig.2_Missense_Mutation_p.R109W|USP37_uc010zkg.1_Missense_Mutation_p.R181W	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	181					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		GGAATCGTCCGAGCTATTCCA	0.403													17	59					0	0	0.007413	0	0
BCS1L	617	broad.mit.edu	37	2	219525914	219525914	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:219525914C>T	uc002vio.2	+	2	622	c.204C>T	c.(202-204)ACC>ACT	p.T68T	ZNF142_uc002vin.2_5'Flank|ZNF142_uc010fvt.2_5'Flank|ZNF142_uc002vim.2_5'Flank|BCS1L_uc002vip.2_Silent_p.T68T|BCS1L_uc002viq.2_Silent_p.T68T|BCS1L_uc010fvu.2_Silent_p.T68T|BCS1L_uc010fvv.2_Silent_p.T68T|BCS1L_uc002vir.2_Silent_p.T68T|BCS1L_uc002vis.2_Silent_p.T68T	NM_004328	NP_004319	Q9Y276	BCS1_HUMAN	BCS1-like	68	Mitochondrial matrix (Potential).				mitochondrial respiratory chain complex I assembly|mitochondrial respiratory chain complex III assembly|mitochondrial respiratory chain complex IV assembly	integral to membrane|mitochondrial respiratory chain complex III	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Renal(207;0.0474)		Epithelial(149;7.12e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCTGGCTCACCCGCCACAGTA	0.562													25	62					0	0	0.004656	0	0
WNT10A	80326	broad.mit.edu	37	2	219745739	219745739	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:219745739C>T	uc002vjd.1	+	1	485	c.22C>T	c.(22-24)CCC>TCC	p.P8S		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	8					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCACCCTCGCCCCTGGCTGCG	0.736													8	3					0	0	0.004482	0	0
CCDC108	255101	broad.mit.edu	37	2	219903208	219903208	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:219903208C>T	uc002vjl.1	-	4	330	c.246G>A	c.(244-246)AGG>AGA	p.R82R	CCDC108_uc010zkp.1_Silent_p.R71R|CCDC108_uc010zkq.1_Silent_p.R17R|CCDC108_uc002vjn.2_Silent_p.R17R	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	82						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGGTGTGGTTCCTGCTGTTCC	0.592													20	11					0	0	0.002780	0	0
ANKZF1	55139	broad.mit.edu	37	2	220098951	220098951	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:220098951G>A	uc002vkg.2	+	9	1319	c.1145G>A	c.(1144-1146)AGA>AAA	p.R382K	ANKZF1_uc010zkv.1_Missense_Mutation_p.R326K|ANKZF1_uc010zkw.1_Missense_Mutation_p.R172K|ANKZF1_uc002vkh.2_Missense_Mutation_p.R172K|ANKZF1_uc002vki.2_Missense_Mutation_p.R382K|ANKZF1_uc002vkj.1_Missense_Mutation_p.R370K	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	382						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAAGAAATAAGAAAGATCTGC	0.473													13	52					0	0	0.002450	0	0
SPEG	10290	broad.mit.edu	37	2	220347557	220347557	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:220347557T>G	uc010fwg.2	+	29	5617	c.5617T>G	c.(5617-5619)TCC>GCC	p.S1873A		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1873					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GCTATTCCTCTCCCGGCGGAG	0.587													3	26					0	0	0.000248	0	0
IRS1	3667	broad.mit.edu	37	2	227662073	227662073	+	Missense_Mutation	SNP	T	C	C	rs138145752		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:227662073T>C	uc002voh.3	-	1	1434	c.1382A>G	c.(1381-1383)GAG>GGG	p.E461G		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	461					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GTTGCTTAGCTCCTCCTCACC	0.622											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	94					0	0	0.006320	0	0
COL4A4	1286	broad.mit.edu	37	2	227898170	227898170	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:227898170C>T	uc010zlt.1	-	38	4187	c.3533G>A	c.(3532-3534)GGC>GAC	p.G1178D		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1178	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCATGCAAGCCGTTCAGGCC	0.517											OREG0015250	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	24					0	0	0.001168	0	0
COL4A4	1286	broad.mit.edu	37	2	227915730	227915730	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:227915730C>T	uc010zlt.1	-	33	3767	c.3113G>A	c.(3112-3114)AGA>AAA	p.R1038K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1038	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AATGAACCCTCTTAGACCAGT	0.542													20	72					0	0	0.001882	0	0
COL4A3	1285	broad.mit.edu	37	2	228131218	228131218	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:228131218G>A	uc002vom.1	+	22	1563	c.1401G>A	c.(1399-1401)GGG>GGA	p.G467G	COL4A3_uc002von.1_Silent_p.G467G|COL4A3_uc002voo.1_Silent_p.G467G|COL4A3_uc002vop.1_Silent_p.G467G|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	467	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GAGTTGATGGGCCCAAAGGTT	0.433													4	14					0	0	0.000248	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881353	228881353	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:228881353G>A	uc002vpq.2	-	7	4264	c.4217C>T	c.(4216-4218)TCC>TTC	p.S1406F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S1406F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S1406F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1406						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGGCACGAGGAAGTTTCTTT	0.438													16	63					0	0	0.007413	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882627	228882627	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:228882627C>T	uc002vpq.2	-	7	2990	c.2943G>A	c.(2941-2943)AGG>AGA	p.R981R	SPHKAP_uc002vpp.2_Silent_p.R981R|SPHKAP_uc010zlx.1_Silent_p.R981R	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	981						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCTCTTTCTTCCTCTTCAAGG	0.542													25	27					0	0	0.003330	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882776	228882776	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:228882776C>T	uc002vpq.2	-	7	2841	c.2794G>A	c.(2794-2796)GAA>AAA	p.E932K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E932K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E932K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	932	PKA-RII subunit binding domain (By similarity).					cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCTGCTAATTCTTCCGCAAAG	0.478													26	71					0	0	0.004656	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883065	228883065	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:228883065C>T	uc002vpq.2	-	7	2552	c.2505G>A	c.(2503-2505)CTG>CTA	p.L835L	SPHKAP_uc002vpp.2_Silent_p.L835L|SPHKAP_uc010zlx.1_Silent_p.L835L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	835						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTATTCCTTTCAGATATATTT	0.488													17	50					0	0	0.004007	0	0
DNER	92737	broad.mit.edu	37	2	230341907	230341907	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:230341907C>T	uc002vpv.2	-	7	1357	c.1210G>A	c.(1210-1212)GGA>AGA	p.G404R	DNER_uc010zly.1_Missense_Mutation_p.G132R	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	404	Extracellular (Potential).|EGF-like 5.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CATGTTGCTCCATTTCTGCAT	0.358													13	37					0	0	0.007413	0	0
SLC16A14	151473	broad.mit.edu	37	2	230911303	230911303	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:230911303T>G	uc002vqd.1	-	4	902	c.539A>C	c.(538-540)AAG>ACG	p.K180T	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.K180T|SLC16A14_uc002vqf.2_Missense_Mutation_p.K180T	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	180	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		GCACAGGTACTTCAGCAGCAC	0.587													15	81					0	0	0.004007	0	0
NMUR1	10316	broad.mit.edu	37	2	232390102	232390102	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:232390102G>A	uc002vry.3	-	3	1043	c.933C>T	c.(931-933)GCC>GCT	p.A311A		NM_006056	NP_006047	Q9HB89	NMUR1_HUMAN	neuromedin U receptor 1	311	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|calcium ion transport|calcium-mediated signaling|chloride transport|smooth muscle contraction	integral to plasma membrane|membrane fraction	neuromedin U receptor activity			lung(3)|central_nervous_system(1)|pancreas(1)	5		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;8.37e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		CGTGGAACGGGGCCCAGCAGA	0.652													14	12					0	0	0.001855	0	0
GIGYF2	26058	broad.mit.edu	37	2	233626129	233626129	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:233626129C>T	uc002vti.3	+	10	852	c.515C>T	c.(514-516)CCA>CTA	p.P172L	GIGYF2_uc010zmj.1_Missense_Mutation_p.P172L|GIGYF2_uc002vtg.2_Missense_Mutation_p.P172L|GIGYF2_uc002vtj.3_Missense_Mutation_p.P172L|GIGYF2_uc002vtk.3_Missense_Mutation_p.P172L|GIGYF2_uc002vth.3_Missense_Mutation_p.P172L|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	172	Arg-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TTTGAAAAACCAGGACGAAAA	0.383													8	34					0	0	0.006214	0	0
DGKD	8527	broad.mit.edu	37	2	234367001	234367001	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:234367001C>T	uc002vui.1	+	22	2664	c.2652C>T	c.(2650-2652)GCC>GCT	p.A884A	DGKD_uc002vuj.1_Silent_p.A840A|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	884					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	TGCAGATGGCCGTCTCTCGAG	0.582													12	11					0	0	0.003163	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526553	234526553	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:234526553G>A	uc002vup.2	+	1	263	c.200G>A	c.(199-201)GGA>GAA	p.G67E	UGT1A8_uc010zmv.1_Missense_Mutation_p.G67E	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	67					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGGCAACTGGGAAAATCACTG	0.502													21	73					0	0	0.001882	0	0
UGT1A7	54577	broad.mit.edu	37	2	234591073	234591073	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:234591073C>T	uc002vut.2	+	1	490	c.490C>T	c.(490-492)CCC>TCC	p.P164S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.P164S	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	164					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TTTCTCCCTCCCCTCTGTGGT	0.448													41	90					0	0	0.003610	0	0
TRPM8	79054	broad.mit.edu	37	2	234873370	234873370	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:234873370G>A	uc002vvh.2	+	14	1888	c.1848G>A	c.(1846-1848)GAG>GAA	p.E616E	TRPM8_uc010fyj.2_Silent_p.E304E	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	616	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	AGTCCGAGGAGCTGGCTAATG	0.597													10	33					0	0	0.002450	0	0
SPP2	6694	broad.mit.edu	37	2	234959463	234959463	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:234959463G>A	uc002vvk.1	+	1	118	c.33G>A	c.(31-33)ATG>ATA	p.M11I	SPP2_uc010fyl.1_5'UTR	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	11					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		TGACGATGATGATGAAGATAT	0.443													16	56					0	0	0.004990	0	0
COL6A3	1293	broad.mit.edu	37	2	238274452	238274452	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:238274452C>T	uc002vwl.2	-	12	6012	c.5727G>A	c.(5725-5727)GAG>GAA	p.E1909E	COL6A3_uc002vwo.2_Silent_p.E1703E|COL6A3_uc010znj.1_Silent_p.E1302E	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1909	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCTCGAGCATCTCTGGCTGGT	0.637													23	26					0	0	0.001882	0	0
RBM44	375316	broad.mit.edu	37	2	238726718	238726718	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:238726718G>A	uc002vxi.3	+	3	1291	c.1159G>A	c.(1159-1161)GAT>AAT	p.D387N		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	386							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		CTCTGTTTTTGATGATTCGAT	0.403													7	22					0	0	0.003080	0	0
ESPNL	339768	broad.mit.edu	37	2	239039003	239039003	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:239039003G>A	uc002vxq.3	+	9	1758	c.1648G>A	c.(1648-1650)GTC>ATC	p.V550I	ESPNL_uc010fyw.2_Missense_Mutation_p.V246I	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	550										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		CAGCATCACGGTCAACAGCCA	0.697													6	13					0	0	0.003080	0	0
ANKMY1	51281	broad.mit.edu	37	2	241439872	241439872	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:241439872G>A	uc002vyz.1	-	13	2599	c.2370C>T	c.(2368-2370)TTC>TTT	p.F790F	ANKMY1_uc002vza.1_Silent_p.F566F|ANKMY1_uc010fzd.1_Silent_p.F879F|ANKMY1_uc002vzb.1_Silent_p.F551F|ANKMY1_uc002vzc.1_Silent_p.F569F|ANKMY1_uc002vzd.1_Silent_p.F613F	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	790							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		CACCTACCTGGAAGAATCTGA	0.607													23	26					0	0	0.006320	0	0
CAPN10	11132	broad.mit.edu	37	2	241537805	241537805	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:241537805C>T	uc002vzk.1	+	11	2164	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	CAPN10_uc002vzl.1_Silent_p.F505F|CAPN10_uc002vzm.1_Silent_p.F126F|CAPN10_uc002vzn.1_Silent_p.F532F|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	660					actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		TGGGCCAGTTCCTCCAAGAGG	0.622													7	19					0	0	0.004482	0	0
KIF1A	547	broad.mit.edu	37	2	241726675	241726675	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:241726675G>A	uc002vzy.2	-	5	568	c.422C>T	c.(421-423)TCC>TTC	p.S141F	KIF1A_uc010fzk.2_Missense_Mutation_p.S141F|KIF1A_uc002vzz.1_Missense_Mutation_p.S141F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	141	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TACCTCCACGGAGTAGGACAT	0.627													5	36					0	0	0.000602	0	0
NEU4	129807	broad.mit.edu	37	2	242755766	242755766	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:242755766C>T	uc010fzr.2	+	2	171	c.85C>T	c.(85-87)CCC>TCC	p.P29S	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.P29S|NEU4_uc002wcn.1_Missense_Mutation_p.P41S|NEU4_uc002wco.1_Missense_Mutation_p.P29S|NEU4_uc002wcp.1_Missense_Mutation_p.P41S	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	29						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CTCGCTGCTCCCCGTGCCCCC	0.706													19	17					0	0	0.008871	0	0
TMC2	117532	broad.mit.edu	37	20	2559813	2559813	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:2559813G>A	uc002wgf.1	+	6	682	c.667G>A	c.(667-669)GAC>AAC	p.D223N	TMC2_uc002wgg.1_Missense_Mutation_p.D207N|TMC2_uc010zpw.1_Missense_Mutation_p.D55N|TMC2_uc010zpx.1_Missense_Mutation_p.D54N	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	223	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						ATTTAAGAGAGACTTTGATAA	0.398													3	8					0	0	0.000602	0	0
PLCB1	23236	broad.mit.edu	37	20	8678391	8678391	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:8678391C>T	uc002wnb.2	+	11	1131	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I	PLCB1_uc010zrb.1_Silent_p.I275I|PLCB1_uc002wna.2_Silent_p.I376I|PLCB1_uc002wnc.1_Silent_p.I275I	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	376	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						AACCTGTCATCACCCATGGCT	0.478													17	37					0	0	0.006122	0	0
PLCB1	23236	broad.mit.edu	37	20	8698344	8698344	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:8698344C>T	uc002wnb.2	+	14	1365	c.1362C>T	c.(1360-1362)AGC>AGT	p.S454S	PLCB1_uc010zrb.1_Silent_p.S353S|PLCB1_uc002wna.2_Silent_p.S454S|PLCB1_uc002wnc.1_Silent_p.S353S|PLCB1_uc002wnd.1_Silent_p.S31S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	454	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTCTTCCAAGCCCTATGGATT	0.408													20	42					0	0	0.003954	0	0
PLCB1	23236	broad.mit.edu	37	20	8698409	8698409	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:8698409G>A	uc002wnb.2	+	14	1430	c.1427G>A	c.(1426-1428)GGA>GAA	p.G476E	PLCB1_uc010zrb.1_Missense_Mutation_p.G375E|PLCB1_uc002wna.2_Missense_Mutation_p.G476E|PLCB1_uc002wnc.1_Missense_Mutation_p.G375E|PLCB1_uc002wnd.1_Missense_Mutation_p.G53E	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	476					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TCATCAGAAGGAAGCGGCAAA	0.463													16	21					0	0	0.004007	0	0
PAK7	57144	broad.mit.edu	37	20	9546694	9546694	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:9546694C>T	uc002wnl.2	-	6	1873	c.1328G>A	c.(1327-1329)GGA>GAA	p.G443E	PAK7_uc002wnk.2_Missense_Mutation_p.G443E|PAK7_uc002wnj.2_Missense_Mutation_p.G443E|PAK7_uc010gby.1_Missense_Mutation_p.G443E	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	443	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CCTGGGGTCTCCTGGGCTGAC	0.607													12	33					0	0	0.001855	0	0
PAK7	57144	broad.mit.edu	37	20	9561101	9561102	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:9561101_9561102AG>CA	uc002wnl.2	-	5	1225_1226	c.680_681CT>TG	c.(679-681)CCT>CTG	p.P227L	PAK7_uc002wnk.2_Missense_Mutation_p.P227L|PAK7_uc002wnj.2_Missense_Mutation_p.P227L|PAK7_uc010gby.1_Missense_Mutation_p.P227L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	227	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AATAATCCAGAGGGGAGCTACT	0.505													10	22					0	0	0.004672	0	0
BTBD3	22903	broad.mit.edu	37	20	11903450	11903450	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:11903450C>T	uc002wnz.2	+	4	1064	c.705C>T	c.(703-705)TTC>TTT	p.F235F	BTBD3_uc002wny.2_Silent_p.F174F|BTBD3_uc002woa.2_Silent_p.F174F|BTBD3_uc010zrf.1_Silent_p.F84F|BTBD3_uc010zrg.1_Silent_p.F84F|BTBD3_uc010zrh.1_Silent_p.F84F	NM_014962	NP_055777	Q9Y2F9	BTBD3_HUMAN	BTB/POZ domain containing protein 3 isoform a	235										ovary(2)|central_nervous_system(1)	3						GCTGCCTGTTCGAGGAGCCAG	0.547													13	27					0	0	0.001855	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													7	20					0	0	0.003080	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18142489	18142489	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:18142489C>T	uc002wqj.2	+	6	1330	c.708C>T	c.(706-708)CCC>CCT	p.P236P	CSRP2BP_uc002wqk.2_Silent_p.P108P|CSRP2BP_uc010zru.1_Silent_p.P107P	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	236					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						CTTTAGATCCCATCATTACTG	0.284													18	32					0	0	0.007413	0	0
C20orf79	140856	broad.mit.edu	37	20	18794751	18794751	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:18794751G>A	uc002wrk.2	+	1	382	c.292G>A	c.(292-294)GGA>AGA	p.G98R	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	98	SCP2.						sterol binding			skin(3)	3						CATGTATCCGGGACCTGCCAG	0.502													15	20					0	0	0.008871	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665768	19665768	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:19665768G>A	uc002wrl.2	+	12	1284	c.1087G>A	c.(1087-1089)GCT>ACT	p.A363T		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	363	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						AAACAGCAGGGCTTATACCAA	0.512													16	33					0	0	0.004990	0	0
SSTR4	6754	broad.mit.edu	37	20	23016129	23016129	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:23016129C>T	uc002wsr.2	+	1	73	c.9C>T	c.(7-9)GCC>GCT	p.A3A		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	3	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TCATGAGCGCCCCCTCGACGC	0.776													4	5					0	0	0.000602	0	0
CST11	140880	broad.mit.edu	37	20	23433416	23433416	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:23433416G>A	uc002wtf.1	-	1	67	c.33C>T	c.(31-33)CTC>CTT	p.L11L	CST11_uc002wtg.1_Silent_p.L11L	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	11					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					TGGCCAACAGGAGCTGTAGGG	0.512													5	18					0	0	0.000602	0	0
TMEM90B	79953	broad.mit.edu	37	20	24646006	24646006	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:24646006G>A	uc002wtw.1	+	4	1276	c.643G>A	c.(643-645)GAC>AAC	p.D215N		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	215	Extracellular (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						GGCCAAGGGGGACTTGCACCA	0.592													41	91					0	0	0.003610	0	0
MYLK2	85366	broad.mit.edu	37	20	30419644	30419644	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:30419644C>T	uc002wwq.2	+	11	1665	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	MYLK2_uc002wws.2_Silent_p.I138I|MYLK2_uc010gdw.1_RNA	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	521	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCAACCTCATCGTCAAGGACC	0.532													14	73					0	0	0.003163	0	0
HCK	3055	broad.mit.edu	37	20	30659560	30659560	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:30659560C>G	uc002wxh.2	+	2	329	c.158C>G	c.(157-159)CCG>CGG	p.P53R	HCK_uc010gdy.2_Missense_Mutation_p.P32R|HCK_uc002wxi.2_Missense_Mutation_p.P32R	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	53					interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GTGTACGTGCCGGATCCCACA	0.577													16	20					0	0	0.003163	0	0
ASXL1	171023	broad.mit.edu	37	20	31023033	31023033	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:31023033C>T	uc002wxs.2	+	12	2944	c.2518C>T	c.(2518-2520)CCT>TCT	p.P840S	ASXL1_uc010geb.2_Missense_Mutation_p.P731S	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	840					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						TATGAAGGATCCTGTAAATGT	0.498			F|N|Mis		MDS|CMML								34	224					0	0	0.006999	0	0
BPIL1	80341	broad.mit.edu	37	20	31598913	31598913	+	Nonsense_Mutation	SNP	C	T	T	rs147239233		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:31598913C>T	uc002wyj.2	+	3	387	c.193C>T	c.(193-195)CAG>TAG	p.Q65*		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	65						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						AGAGGCGCTTCAGCCCACCAG	0.622													11	62					0	0	0.008291	0	0
BPIL1	80341	broad.mit.edu	37	20	31607460	31607460	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:31607460C>T	uc002wyj.2	+	11	1178	c.984C>T	c.(982-984)CTC>CTT	p.L328L		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	328						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						TGGCCATGCTCCACACAAACA	0.662													13	25					0	0	0.002450	0	0
C20orf185	359710	broad.mit.edu	37	20	31659974	31659974	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:31659974G>A	uc002wym.1	+	13	1324	c.1324_splice	c.e13+1	p.V442_splice		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor						innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						AAGCTTAACGGTATGGCAGGT	0.517													30	48					0	0	0.003755	0	0
C20orf144	128864	broad.mit.edu	37	20	32251358	32251358	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:32251358C>T	uc002wzs.1	+	2	179	c.147C>T	c.(145-147)CTC>CTT	p.L49L	NECAB3_uc002wzl.2_5'Flank|NECAB3_uc002wzm.3_Intron|NECAB3_uc002wzn.3_Intron|NECAB3_uc002wzo.3_Intron|NECAB3_uc002wzp.3_Intron|NECAB3_uc002wzq.3_Intron|NECAB3_uc002wzr.3_Intron|NECAB3_uc010geo.2_Intron|C20orf134_uc002wzt.2_5'Flank	NM_080825	NP_543015	Q9BQM9	CT144_HUMAN	hypothetical protein LOC128864	49											0						TGCTGATTCTCCCCCTGGACA	0.721													19	25					0	0	0.001882	0	0
MMP24	10893	broad.mit.edu	37	20	33834786	33834786	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:33834786G>A	uc002xbu.2	+	2	393	c.390G>A	c.(388-390)ACG>ACA	p.T130T	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	130	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			ATCAGACAACGATCGAGTAAG	0.522													43	54					0	0	0.003610	0	0
FAM83C	128876	broad.mit.edu	37	20	33875403	33875403	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:33875403G>A	uc010zux.1	-	4	1297	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Intron	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	393										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GGCGATGTAGGGAGGGCTGGC	0.637													6	22					0	0	0.001168	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060224	35060224	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:35060224C>T	uc002xff.2	+	3	539	c.104C>T	c.(103-105)TCG>TTG	p.S35L	DLGAP4_uc010zvp.1_Missense_Mutation_p.S35L	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	35					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				TACCTGCTGTCGCCCACGGAG	0.701													12	53					0	0	0.003163	0	0
DLGAP4	22839	broad.mit.edu	37	20	35061085	35061085	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:35061085C>T	uc002xff.2	+	3	1400	c.965C>T	c.(964-966)TCC>TTC	p.S322F	DLGAP4_uc010zvp.1_Missense_Mutation_p.S322F	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	322					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				AAGTCCAAATCCTGCCACCAG	0.612													10	32					0	0	0.001855	0	0
SAMHD1	25939	broad.mit.edu	37	20	35545216	35545216	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:35545216C>T	uc002xgh.1	-	9	1101	c.971G>A	c.(970-972)GGA>GAA	p.G324E		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	324					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				ATTTTGGATTCCAAGATGATG	0.338													94	127					0	0	0.003610	0	0
KIAA0406	9675	broad.mit.edu	37	20	36612003	36612003	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:36612003G>A	uc002xhl.2	-	9	3334	c.3125C>T	c.(3124-3126)ACC>ATC	p.T1042I	KIAA0406_uc002xhm.2_Missense_Mutation_p.T1042I	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	1042							binding				0		Myeloproliferative disorder(115;0.00874)				GAGGAACCAGGTGGAGTCTGG	0.607													11	33					0	0	0.001855	0	0
KIAA0406	9675	broad.mit.edu	37	20	36641014	36641014	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:36641014G>A	uc002xhl.2	-	3	1414	c.1205C>T	c.(1204-1206)TCC>TTC	p.S402F	KIAA0406_uc002xhm.2_Missense_Mutation_p.S402F	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	402							binding				0		Myeloproliferative disorder(115;0.00874)				AAGTAACAAGGAAAGAGTAGA	0.478													28	114					0	0	0.002445	0	0
TGM2	7052	broad.mit.edu	37	20	36766765	36766765	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:36766765G>A	uc002xhr.2	-	10	1465	c.1365C>T	c.(1363-1365)GCC>GCT	p.A455A	TGM2_uc010zvx.1_Silent_p.A374A|TGM2_uc010zvy.1_Silent_p.A395A|TGM2_uc002xhs.1_Silent_p.A431A|TGM2_uc002xht.2_Silent_p.A455A	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	455					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	CCCTTGTGAAGGCCTCCCTCT	0.582													88	64					0	0	0.003610	0	0
FAM83D	81610	broad.mit.edu	37	20	37570694	37570694	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:37570694C>T	uc002xjg.2	+	2	707	c.666C>T	c.(664-666)ATC>ATT	p.I222I	FAM83D_uc002xjf.2_Silent_p.I222I	NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	192					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				CTGTGTATATCCTTCTGGACC	0.448													47	81					0	0	0.003610	0	0
DHX35	60625	broad.mit.edu	37	20	37653908	37653908	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:37653908C>T	uc002xjh.2	+	18	1718	c.1707C>T	c.(1705-1707)TTC>TTT	p.F569F	DHX35_uc010zwa.1_Silent_p.F414F|DHX35_uc010zwb.1_Silent_p.F414F|DHX35_uc010zwc.1_Silent_p.F538F	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	569						catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGGAACATTTCCTGAATTACA	0.418													106	175					0	0	0.003610	0	0
LPIN3	64900	broad.mit.edu	37	20	39984674	39984674	+	Silent	SNP	C	T	T	rs148198959	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:39984674C>T	uc002xjx.2	+	14	1894	c.1803C>T	c.(1801-1803)ATC>ATT	p.I601I	LPIN3_uc010ggh.2_Silent_p.I602I|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	601	C-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				CCGATCAGATCGTAAGTGTGG	0.493													9	59					0	0	0.006214	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991482	39991482	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:39991482G>A	uc002xjy.1	-	4	951	c.727C>T	c.(727-729)CCA>TCA	p.P243S		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	243						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GGTGTTAGTGGCCCTCTGGCT	0.597													17	53					0	0	0.007413	0	0
PTPRT	11122	broad.mit.edu	37	20	40713401	40713401	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:40713401G>A	uc002xkg.2	-	29	4241	c.4057C>T	c.(4057-4059)CTG>TTG	p.L1353L	PTPRT_uc010ggj.2_Silent_p.L1372L|PTPRT_uc010ggi.2_Silent_p.L556L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1353	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACTTTGAGCAGAGAGCGCTTG	0.592													10	41					0	0	0.006214	0	0
PTPRT	11122	broad.mit.edu	37	20	40743863	40743863	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:40743863G>A	uc002xkg.2	-	22	3259	c.3075C>T	c.(3073-3075)GTC>GTT	p.V1025V	PTPRT_uc010ggj.2_Silent_p.V1044V|PTPRT_uc010ggi.2_Silent_p.V228V	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1025	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGGTGCGTATGACGTATTCTG	0.478													48	58					0	0	0.003610	0	0
PTPRT	11122	broad.mit.edu	37	20	40770569	40770570	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:40770569_40770570CC>TT	uc002xkg.2	-	18	2939_2940	c.2755_2756GG>AA	c.(2755-2757)GGG>AAG	p.G919K	PTPRT_uc010ggj.2_Missense_Mutation_p.G938K|PTPRT_uc010ggi.2_Missense_Mutation_p.G122K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	919	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TATGATGTTCCCATATCGATTC	0.475													32	194					0	0	0.004672	0	0
PTPRT	11122	broad.mit.edu	37	20	41101158	41101158	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:41101158C>T	uc002xkg.2	-	8	1382	c.1198G>A	c.(1198-1200)GCC>ACC	p.A400T	PTPRT_uc010ggj.2_Missense_Mutation_p.A400T	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	400	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGCTGCCGGGCTCTGATGTCT	0.567													8	47					0	0	0.004482	0	0
ZNF335	63925	broad.mit.edu	37	20	44598277	44598277	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:44598277G>A	uc002xqw.2	-	3	378	c.255C>T	c.(253-255)CTC>CTT	p.L85L	ZNF335_uc010zxk.1_Intron|ZNF335_uc002xqx.1_Silent_p.L53L|ZNF335_uc002xqy.2_5'Flank	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	85					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				ATGAATCAGGGAGGTAGCTAT	0.582											OREG0025987	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	112					0	0	0.002445	0	0
SLC12A5	57468	broad.mit.edu	37	20	44663604	44663604	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:44663604G>A	uc010zxl.1	+	2	215	c.139G>A	c.(139-141)GAA>AAA	p.E47K	SLC12A5_uc002xra.2_Missense_Mutation_p.E24K|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.E24K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	47	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CAACCCCAAGGAAAGCAGTCC	0.542													11	119					0	0	0.000978	0	0
ZMYND8	23613	broad.mit.edu	37	20	45927672	45927672	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:45927672G>A	uc002xta.1	-	4	448	c.194C>T	c.(193-195)CCG>CTG	p.P65L	ZMYND8_uc010ghr.1_Intron|ZMYND8_uc002xst.1_Intron|ZMYND8_uc002xsu.1_Missense_Mutation_p.P65L|ZMYND8_uc002xsv.1_Intron|ZMYND8_uc002xsw.1_5'UTR|ZMYND8_uc002xsx.1_5'UTR|ZMYND8_uc002xsy.1_Intron|ZMYND8_uc002xsz.1_Intron|ZMYND8_uc010zxy.1_Missense_Mutation_p.P92L|ZMYND8_uc002xtb.1_Missense_Mutation_p.P85L|ZMYND8_uc002xss.2_Intron|ZMYND8_uc010zxz.1_Intron|ZMYND8_uc002xtc.1_Missense_Mutation_p.P85L|ZMYND8_uc002xtd.1_Intron|ZMYND8_uc002xte.1_Missense_Mutation_p.P65L|ZMYND8_uc010zya.1_Missense_Mutation_p.P65L|ZMYND8_uc002xtf.1_Missense_Mutation_p.P85L|ZMYND8_uc002xtg.2_Intron|ZMYND8_uc010ghs.1_Intron|ZMYND8_uc002xth.2_Missense_Mutation_p.P85L	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	65							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			ATAGTAAAACGGACCATGTCT	0.423													17	88					0	0	0.001523	0	0
SULF2	55959	broad.mit.edu	37	20	46301014	46301014	+	Missense_Mutation	SNP	C	T	T	rs143133611	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:46301014C>T	uc002xto.2	-	11	1834	c.1504G>A	c.(1504-1506)GAG>AAG	p.E502K	SULF2_uc002xtr.2_Missense_Mutation_p.E502K|SULF2_uc002xtq.2_Missense_Mutation_p.E502K	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	502					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GTGCAGGCCTCGCTGCCCTGC	0.617													46	50					0	0	0.003610	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47635467	47635467	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:47635467C>T	uc002xtx.3	+	34	4708	c.4556C>T	c.(4555-4557)CCC>CTC	p.P1519L	ARFGEF2_uc010zyf.1_Missense_Mutation_p.P812L	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1519					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GATAAAAATCCCTCTGAGAGG	0.423													12	35					0	0	0.001855	0	0
KCNB1	3745	broad.mit.edu	37	20	47989816	47989816	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:47989816C>T	uc002xur.1	-	2	2445	c.2281G>A	c.(2281-2283)GAT>AAT	p.D761N	KCNB1_uc002xus.1_Missense_Mutation_p.D761N	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	761	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCCTCATCATCTGTGTCTGCG	0.567													64	229					0	0	0.003610	0	0
PTGIS	5740	broad.mit.edu	37	20	48166673	48166673	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:48166673G>A	uc002xut.2	-	2	182	c.128C>T	c.(127-129)GCC>GTC	p.A43V	PTGIS_uc010zyi.1_5'UTR	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	43					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	AAAGTCCAAGGCATACCCCAA	0.557													27	30					0	0	0.004656	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48746165	48746165	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:48746165G>A	uc002xvf.2	-	4	557	c.396C>T	c.(394-396)TTC>TTT	p.F132F	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Silent_p.F132F|TMEM189_uc010gif.2_Silent_p.F129F|TMEM189_uc010zyp.1_Silent_p.F57F	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	Error:Variant_position_missing_in_Q13404_after_alignment					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			TGGTCTCGATGAAGTCGTGCC	0.597													28	49					0	0	0.005443	0	0
KCNG1	3755	broad.mit.edu	37	20	49626147	49626147	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:49626147G>A	uc002xwa.3	-	2	1024	c.729C>T	c.(727-729)AAC>AAT	p.N243N	KCNG1_uc002xwb.2_Silent_p.N243N	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	243	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						TGACGGAGAGGTTGACGGCGG	0.682													6	13					0	0	0.003080	0	0
ATP9A	10079	broad.mit.edu	37	20	50235499	50235499	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:50235499G>A	uc002xwg.1	-	20	2199	c.2199C>T	c.(2197-2199)TCC>TCT	p.S733S	ATP9A_uc010gih.1_Silent_p.S597S|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	733	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TCACCTCCAGGGAGTCTCCCG	0.652													29	31					0	0	0.004878	0	0
ZFP64	55734	broad.mit.edu	37	20	50769921	50769921	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:50769921G>A	uc002xwl.2	-	6	1159	c.810C>T	c.(808-810)ATC>ATT	p.I270I	ZFP64_uc002xwk.2_Intron|ZFP64_uc002xwm.2_Silent_p.I268I|ZFP64_uc002xwn.2_Silent_p.I216I	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	270	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AGTCCGAGCTGATTTTGAACT	0.552													20	26					0	0	0.002299	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870456	51870456	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:51870456G>A	uc002xwo.2	+	2	1415	c.459G>A	c.(457-459)AGG>AGA	p.R153R		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	153					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTGAGAGGAGGAACTGTGACA	0.522													28	58					0	0	0.002445	0	0
LAMA5	3911	broad.mit.edu	37	20	60892007	60892007	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:60892007G>A	uc002ycq.2	-	56	7651	c.7584C>T	c.(7582-7584)ATC>ATT	p.I2528I		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2528	Potential.|Domain II and I.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CGGCCTGCAGGATGCGGCTGT	0.687													17	16					0	0	0.007413	0	0
SLC17A9	63910	broad.mit.edu	37	20	61595008	61595008	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:61595008C>T	uc002yea.3	+	7	982	c.798C>T	c.(796-798)TTC>TTT	p.F266F	SLC17A9_uc002ydz.3_Silent_p.F260F|SLC17A9_uc011aap.1_Silent_p.F286F	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	266					exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						CCACCTTCTTCGAGGAGACCT	0.662													5	5					0	0	0.003080	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834424	61834424	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:61834424G>A	uc002yeh.2	-	4	1162	c.868C>T	c.(868-870)CCC>TCC	p.P290S	YTHDF1_uc011aaq.1_Missense_Mutation_p.P240S	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	290	Gln/Pro-rich.									ovary(2)	2						TGTGGAGAGGGTGCCTGCTGG	0.657													23	24					0	0	0.001882	0	0
SRMS	6725	broad.mit.edu	37	20	62175640	62175640	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:62175640C>T	uc002yfi.1	-	2	459	c.418G>A	c.(418-420)GAA>AAA	p.E140K		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	140	SH2.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GCCCCTGGTTCGTTGGGTGGG	0.672													4	4					0	0	0.001168	0	0
ZBTB46	140685	broad.mit.edu	37	20	62378417	62378417	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr20:62378417C>T	uc002ygv.1	-	5	1837	c.1636G>A	c.(1636-1638)GAG>AAG	p.E546K	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	546					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CCCAGCTCCTCCGCCTCCCCT	0.726													18	7					0	0	0.002299	0	0
TPTE	7179	broad.mit.edu	37	21	10934955	10934955	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:10934955G>A	uc002yip.1	-	15	1206	c.838C>T	c.(838-840)CGA>TGA	p.R280*	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Nonsense_Mutation_p.R262*|TPTE_uc002yir.1_Nonsense_Mutation_p.R242*|TPTE_uc010gkv.1_Nonsense_Mutation_p.R142*	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	280	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTGTAGACTCGATAGTGGTTT	0.333													8	134					0	0	0.004482	0	0
LIPI	149998	broad.mit.edu	37	21	15558358	15558358	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:15558358G>A	uc002yjm.2	-	3	538	c.528C>T	c.(526-528)TTC>TTT	p.F176F	LIPI_uc010gkw.1_Silent_p.F109F	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	155					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TCACACCTATGAAATGAAAAT	0.328													45	62					0	0	0.003610	0	0
LIPI	149998	broad.mit.edu	37	21	15561519	15561519	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:15561519G>A	uc002yjm.2	-	2	341	c.331C>T	c.(331-333)CCA>TCA	p.P111S	LIPI_uc010gkw.1_Missense_Mutation_p.P44S	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	90					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		AGCCATAATGGGATGGAGCCT	0.373													10	15					0	0	0.000978	0	0
SAMSN1	64092	broad.mit.edu	37	21	15858321	15858321	+	Missense_Mutation	SNP	C	T	T	rs144162434	by1000genomes	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:15858321C>T	uc002yju.1	-	8	1116	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	SAMSN1_uc010gky.1_Missense_Mutation_p.G177E|SAMSN1_uc002yjv.1_Missense_Mutation_p.G413E	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	345					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		ATCTGAATTTCCTGATGAGAT	0.428													13	16					0	0	0.002450	0	0
MRPL39	54148	broad.mit.edu	37	21	26965265	26965265	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:26965265G>A	uc002ylo.2	-	8	794	c.780C>T	c.(778-780)TTC>TTT	p.F260F	MRPL39_uc002yln.2_Silent_p.F260F	NM_017446	NP_059142	Q9NYK5	RM39_HUMAN	mitochondrial ribosomal protein L39 isoform a	260						mitochondrial ribosome	nucleotide binding				0						TCACATCAATGAAGTCACCTA	0.358													13	43					0	0	0.003163	0	0
N6AMT1	29104	broad.mit.edu	37	21	30252202	30252202	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:30252202G>A	uc002ymo.1	-	4	412	c.386C>T	c.(385-387)CCA>CTA	p.P129L	N6AMT1_uc002ymp.1_Intron|N6AMT1_uc002ymq.1_RNA	NM_013240	NP_037372	Q9Y5N5	HEMK2_HUMAN	N-6 adenine-specific DNA methyltransferase 1	129					positive regulation of cell growth	protein complex	nucleic acid binding|protein binding|protein methyltransferase activity				0						CTCTTGAGGTGGAGTCACTAC	0.318													21	91					0	0	0.002780	0	0
TIAM1	7074	broad.mit.edu	37	21	32554834	32554834	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:32554834C>T	uc002yow.1	-	16	3263	c.2791G>A	c.(2791-2793)GAG>AAG	p.E931K	TIAM1_uc011adk.1_Missense_Mutation_p.E931K|TIAM1_uc011adl.1_Missense_Mutation_p.E871K	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	931					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ACTCCTTCCTCCAGCTCGGGG	0.612													22	9					0	0	0.002780	0	0
GCFC1	94104	broad.mit.edu	37	21	34117948	34117948	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:34117948C>T	uc002yqn.2	-	12	2195	c.2005G>A	c.(2005-2007)GAT>AAT	p.D669N	GCFC1_uc002yql.2_Missense_Mutation_p.D178N|GCFC1_uc002yqm.2_Missense_Mutation_p.D163N|GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Missense_Mutation_p.D669N	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	669						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TCTACATCATCTTTTTCTTGC	0.378													33	30					0	0	0.002445	0	0
ITSN1	6453	broad.mit.edu	37	21	35260578	35260578	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:35260578G>A	uc002yta.1	+	40	5408	c.5140G>A	c.(5140-5142)GAC>AAC	p.D1714N	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.D1709N|ITSN1_uc002ytj.2_Missense_Mutation_p.D1653N|ITSN1_uc010gmm.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1714					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						GGTCCGCTTGGACCTGCAGTT	0.572													5	12					0	0	0.000602	0	0
DOPEY2	9980	broad.mit.edu	37	21	37581028	37581028	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:37581028C>T	uc002yvg.2	+	5	586	c.507C>T	c.(505-507)CTC>CTT	p.L169L	DOPEY2_uc011aeb.1_Silent_p.L169L	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	169					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						ATGCTCTGCTCCTGAGACTGT	0.602													11	33					0	0	0.008291	0	0
DOPEY2	9980	broad.mit.edu	37	21	37602826	37602826	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:37602826C>T	uc002yvg.2	+	14	1823	c.1744C>T	c.(1744-1746)CCC>TCC	p.P582S	DOPEY2_uc011aeb.1_Missense_Mutation_p.P582S	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	582					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TGCTTCGTTTCCCCCTCTGAA	0.483													15	39					0	0	0.003163	0	0
B3GALT5	10317	broad.mit.edu	37	21	41033004	41033004	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:41033004A>T	uc002yyb.1	+	5	1110	c.518A>T	c.(517-519)AAA>ATA	p.K173I	B3GALT5_uc002yye.2_Missense_Mutation_p.K173I|B3GALT5_uc002yyi.1_Missense_Mutation_p.K173I|B3GALT5_uc002yyj.1_Missense_Mutation_p.K173I|B3GALT5_uc002yyk.1_Missense_Mutation_p.K173I|B3GALT5_uc002yyl.1_Missense_Mutation_p.K173I|B3GALT5_uc002yym.1_Missense_Mutation_p.K173I	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	173	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				CTTCTGAAGAAAAACAGAACA	0.433													18	39					0	0	0.008871	0	0
PCP4	5121	broad.mit.edu	37	21	41301006	41301006	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:41301006C>T	uc002yyp.2	+	3	240	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_006198	NP_006189	P48539	PCP4_HUMAN	Purkinje cell protein 4	53	IQ.				central nervous system development	cytosol|nucleus				large_intestine(1)	1		Prostate(19;2.65e-06)|all_epithelial(19;0.138)				TCAGAAAATTCCAGAAGAAGA	0.448													13	30					0	0	0.003163	0	0
DSCAM	1826	broad.mit.edu	37	21	41719784	41719784	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:41719784C>T	uc002yyq.1	-	6	1475	c.1023G>A	c.(1021-1023)GAG>GAA	p.E341E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	341	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTTCCTGGTCCTCAGTTCCTG	0.493													21	61					0	0	0.001523	0	0
DSCAM	1826	broad.mit.edu	37	21	42080515	42080515	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:42080515G>A	uc002yyq.1	-	2	678	c.226C>T	c.(226-228)CAC>TAC	p.H76Y	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	76	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCGTTGGGGTGGACGTGGCGG	0.542													32	45					0	0	0.008361	0	0
ABCG1	9619	broad.mit.edu	37	21	43645804	43645804	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:43645804G>A	uc002zaq.2	+	2	172	c.66G>A	c.(64-66)GAG>GAA	p.E22E	ABCG1_uc002zan.2_Silent_p.E24E|ABCG1_uc002zam.2_5'UTR|ABCG1_uc002zao.2_Silent_p.E19E|ABCG1_uc002zap.2_Silent_p.E22E|ABCG1_uc002zar.2_Silent_p.E33E|ABCG1_uc011aev.1_Silent_p.E33E	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	22	Cytoplasmic (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	ACTCTGCAGAGATGACGGAGC	0.483													49	36					0	0	0.003610	0	0
SIK1	150094	broad.mit.edu	37	21	44838314	44838314	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:44838314G>A	uc002zdf.2	-	12	1697	c.1570C>T	c.(1570-1572)CCG>TCG	p.P524S		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	524					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						TGAGTGGCCGGGGTGCCACTG	0.701													3	8					0	0	0.004672	0	0
AIRE	326	broad.mit.edu	37	21	45711070	45711070	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:45711070C>T	uc002zei.2	+	8	1099	c.972C>T	c.(970-972)TCC>TCT	p.S324S	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Silent_p.S127S|AIRE_uc010gpr.2_Silent_p.S127S	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	324	PHD-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CCTGCCTGTCCCCTCCGCTCC	0.682									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				16	15					0	0	0.004007	0	0
TRPM2	7226	broad.mit.edu	37	21	45821572	45821572	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:45821572G>A	uc002zet.1	+	17	2543	c.2330G>A	c.(2329-2331)AGG>AAG	p.R777K	TRPM2_uc002zeu.1_Missense_Mutation_p.R777K|TRPM2_uc002zew.1_Missense_Mutation_p.R777K|TRPM2_uc010gpt.1_Missense_Mutation_p.R777K|TRPM2_uc002zex.1_Missense_Mutation_p.R563K|TRPM2_uc002zey.1_Missense_Mutation_p.R290K	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	777	Extracellular (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGGGAGAAGAGGCTGCAGGAT	0.672													25	19					0	0	0.003330	0	0
FTCD	10841	broad.mit.edu	37	21	47574148	47574148	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:47574148G>A	uc002zif.2	-	2	197	c.153C>T	c.(151-153)TTC>TTT	p.F51F	FTCD_uc002zig.2_Silent_p.F51F|FTCD_uc002zih.2_Silent_p.F51F|FTCD_uc010gqf.2_Silent_p.F51F|FTCD_uc010gqg.1_5'UTR	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	51	Formiminotransferase N-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	GCGGCCCCACGAAGGTGTACA	0.657													16	22					0	0	0.006122	0	0
C21orf57	54059	broad.mit.edu	37	21	47711300	47711300	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr21:47711300T>C	uc002ziv.2	+	3	692	c.263T>C	c.(262-264)TTG>TCG	p.L88S	C21orf57_uc002zit.1_Missense_Mutation_p.L88S|C21orf57_uc002ziu.1_Missense_Mutation_p.L88S|C21orf57_uc002ziw.2_Missense_Mutation_p.L43S|C21orf57_uc002zix.2_Missense_Mutation_p.L88S|C21orf57_uc010gqh.2_Intron|C21orf57_uc002ziy.2_Intron|uc010gqi.1_5'Flank	NM_058181	NP_478061	P58557	YBEY_HUMAN	hypothetical protein LOC54059 isoform 1	88							metal ion binding|metalloendopeptidase activity				0	Breast(49;0.112)			Colorectal(79;0.236)		GACTACAATTTGGGAGACATT	0.398													6	27					0	0	0.001984	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072308	17072308	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:17072308C>T	uc002zlp.1	-	1	1393	c.1133G>A	c.(1132-1134)AGG>AAG	p.R378K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	378					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GGTGGCTCCCCTGAGAACCAC	0.567													38	45					0	0	0.002222	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073120	17073120	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:17073120G>A	uc002zlp.1	-	1	581	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	107					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GCAGAACCACGAAGGCTGTGC	0.662													8	17					0	0	0.006214	0	0
AIFM3	150209	broad.mit.edu	37	22	21330536	21330536	+	Silent	SNP	C	T	T	rs141390776		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:21330536C>T	uc002ztj.2	+	10	1058	c.840C>T	c.(838-840)GTC>GTT	p.V280V	AIFM3_uc002ztk.2_Silent_p.V280V|AIFM3_uc002ztl.2_Silent_p.V286V|AIFM3_uc011ahx.1_Silent_p.V268V|AIFM3_uc002ztm.1_Silent_p.V92V	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	280					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			CTAAGAAGGTCGTGTTCAAGG	0.612													21	28					0	0	0.002780	0	0
MMP11	4320	broad.mit.edu	37	22	24125724	24125724	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:24125724T>C	uc002zxx.2	+	8	1482	c.1460T>C	c.(1459-1461)TTC>TCC	p.F487S	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_RNA	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	487					collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				GCCAACACTTTCCTCTGACCA	0.587													25	45					0	0	0.001786	0	0
SUSD2	56241	broad.mit.edu	37	22	24581204	24581204	+	Missense_Mutation	SNP	G	A	A	rs139873837		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:24581204G>A	uc002zzn.1	+	6	969	c.925G>A	c.(925-927)GAG>AAG	p.E309K		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	309	AMOP.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTTCCTGGAGGAGCTGCCGGA	0.672													14	16					0	0	0.003163	0	0
GGT5	2687	broad.mit.edu	37	22	24621589	24621589	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:24621589C>T	uc002zzo.3	-	9	1678	c.1261G>A	c.(1261-1263)GGC>AGC	p.G421S	GGT5_uc002zzp.3_Missense_Mutation_p.G421S|GGT5_uc002zzr.3_Missense_Mutation_p.G389S|GGT5_uc002zzq.3_Missense_Mutation_p.G389S|GGT5_uc011ajm.1_Missense_Mutation_p.G344S	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	421	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						AGGATGATGCCTGTCCGTGGT	0.627													14	35					0	0	0.002450	0	0
GGT1	2678	broad.mit.edu	37	22	25019109	25019109	+	Missense_Mutation	SNP	C	A	A	rs113647199		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:25019109C>A	uc003aan.1	+	10	1256	c.769C>A	c.(769-771)CGT>AGT	p.R257S	GGT1_uc003aas.1_Missense_Mutation_p.R257S|GGT1_uc003aat.1_Missense_Mutation_p.R257S|GGT1_uc003aau.1_Missense_Mutation_p.R257S|GGT1_uc003aav.1_Missense_Mutation_p.R257S|GGT1_uc003aaw.1_Missense_Mutation_p.R257S|GGT1_uc003aax.1_Missense_Mutation_p.R257S	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	257	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	GAACAACTACCGTGCTGAGCT	0.627													4	30					0.00116845	0.00160195	0.001168	1	0
MYO18B	84700	broad.mit.edu	37	22	26242217	26242217	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:26242217G>A	uc003abz.1	+	19	3769	c.3519G>A	c.(3517-3519)AGG>AGA	p.R1173R	MYO18B_uc003aca.1_Silent_p.R1054R|MYO18B_uc010guy.1_Silent_p.R1055R|MYO18B_uc010guz.1_Silent_p.R1054R|MYO18B_uc011aka.1_Silent_p.R327R|MYO18B_uc011akb.1_Silent_p.R686R	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1173	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CGGTGAGGAGGAAAGCCCCGT	0.627													18	25					0	0	0.002299	0	0
ZNRF3	84133	broad.mit.edu	37	22	29444392	29444392	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:29444392C>T	uc003aeg.2	+	7	793	c.628C>T	c.(628-630)CCC>TCC	p.P210S	ZNRF3_uc003aeh.1_Missense_Mutation_p.P210S	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	310	RING-type; atypical.|Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GCGGGTCATCCCCTGTACTCA	0.607													15	28					0	0	0.002450	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887647	30887647	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:30887647C>T	uc003aid.2	-	11	1094	c.994G>A	c.(994-996)GAG>AAG	p.E332K	SEC14L4_uc011akz.1_Missense_Mutation_p.E332K|SEC14L4_uc003aie.2_Missense_Mutation_p.E317K|SEC14L4_uc003aif.2_Missense_Mutation_p.E278K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	332	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	TCCGTCATCTCCCTAGCACTC	0.607													35	48					0	0	0.003755	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951054	30951054	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:30951054G>A	uc003aig.1	-	4	1298	c.1158C>T	c.(1156-1158)CAC>CAT	p.H386H	GAL3ST1_uc003aih.1_Silent_p.H386H|GAL3ST1_uc003aii.1_Silent_p.H386H|GAL3ST1_uc010gvz.1_Silent_p.H386H	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	386	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						AGAGCTGCGCGTGCCGCTGCC	0.647													25	38					0	0	0.005443	0	0
LIMK2	3985	broad.mit.edu	37	22	31658740	31658740	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:31658740G>A	uc003akh.2	+	7	962	c.817G>A	c.(817-819)GAG>AAG	p.E273K	LIMK2_uc003akg.2_Missense_Mutation_p.E190K|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.E252K|LIMK2_uc003akk.2_Missense_Mutation_p.E252K|LIMK2_uc011aln.1_Missense_Mutation_p.E190K	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	273						mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						GGACACCAAGGAGAATCTGGA	0.632													3	4					0	0	0.004672	0	0
RFPL2	10739	broad.mit.edu	37	22	32590399	32590399	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:32590399G>A	uc003amg.3	-	3	1134	c.198C>T	c.(196-198)GCC>GCT	p.A66A	RFPL2_uc003ame.3_5'Flank|RFPL2_uc003amf.3_Intron|RFPL2_uc003amh.3_Intron	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	66							zinc ion binding			skin(1)	1						GTGGGGAAGGGGCACACGAGG	0.547													7	14					0	0	0.003080	0	0
CACNG2	10369	broad.mit.edu	37	22	36960623	36960623	+	Silent	SNP	G	A	A	rs1065089		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:36960623G>A	uc003aps.1	-	4	1029	c.747C>T	c.(745-747)TCC>TCT	p.S249S		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	249					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						AGGCGTCCCTGGAGTGTGAGG	0.677													67	78					0	0	0.003610	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37470658	37470658	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:37470658C>T	uc003aqs.1	-	12	1574	c.1460G>A	c.(1459-1461)AGA>AAA	p.R487K	TMPRSS6_uc003aqt.1_Missense_Mutation_p.R478K	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	487	LDL-receptor class A 1.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						ACCGCAGTTTCTCTCATCCAG	0.597													14	23					0	0	0.002450	0	0
MICALL1	85377	broad.mit.edu	37	22	38313740	38313740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:38313740C>T	uc003aui.2	+	4	448	c.364C>T	c.(364-366)CTT>TTT	p.L122F		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	122						cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					CAGAAAGGGCCTTGCACCCTG	0.612													34	46					0	0	0.003214	0	0
POLR2F	5435	broad.mit.edu	37	22	38355426	38355426	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:38355426C>T	uc003aul.2	+	3	285	c.164C>T	c.(163-165)CCA>CTA	p.P55L	POLR2F_uc010gxi.2_Silent_p.T48T|POLR2F_uc003aum.2_RNA	NM_021974	NP_068809	P61218	RPAB2_HUMAN	DNA directed RNA polymerase II polypeptide F	55					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex|nucleolus	DNA binding|DNA-directed RNA polymerase activity			breast(1)	1	Melanoma(58;0.045)					ATCACCACACCATACATGACC	0.582													47	97					0	0	0.003610	0	0
NPTXR	23467	broad.mit.edu	37	22	39218644	39218644	+	Silent	SNP	G	A	A	rs145163836		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:39218644G>A	uc003awk.2	-	5	1627	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	491	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					TGCAGACATCGAAGGCAGCCT	0.622													9	15					0	0	0.008291	0	0
ATF4	468	broad.mit.edu	37	22	39918330	39918330	+	Missense_Mutation	SNP	C	T	T	rs147899546		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:39918330C>T	uc003axz.2	+	3	1059	c.779C>T	c.(778-780)CCT>CTT	p.P260L	ATF4_uc011aol.1_Missense_Mutation_p.P172L|ATF4_uc003aya.2_Missense_Mutation_p.P260L	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	260					cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress|transcription from RNA polymerase II promoter	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Melanoma(58;0.04)					CGTCCCAAACCTTACGATCCT	0.517													8	20					0	0	0.004482	0	0
CACNA1I	8911	broad.mit.edu	37	22	40057217	40057217	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:40057217C>T	uc003ayc.2	+	16	2803	c.2803C>T	c.(2803-2805)CGA>TGA	p.R935*	CACNA1I_uc003ayd.2_Nonsense_Mutation_p.R900*|CACNA1I_uc003aye.2_Nonsense_Mutation_p.R850*|CACNA1I_uc003ayf.2_Nonsense_Mutation_p.R815*	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	935	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACCTGCCCCCCGACTCTCACT	0.657													9	26					0	0	0.006214	0	0
MKL1	57591	broad.mit.edu	37	22	40827451	40827451	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:40827451G>A	uc003ayv.1	-	3	304	c.97C>T	c.(97-99)CGG>TGG	p.R33W	MKL1_uc003ayw.1_Missense_Mutation_p.R33W|MKL1_uc010gye.1_Missense_Mutation_p.R33W|MKL1_uc010gyf.1_Missense_Mutation_p.R33W	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	33	RPEL 1.|Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CTCTCCGGCCGGGAACGAATC	0.473			T	RBM15	acute megakaryocytic leukemia								129	133					0	0	0.003610	0	0
NFAM1	150372	broad.mit.edu	37	22	42793936	42793936	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:42793936G>A	uc003bcn.3	-	4	629	c.591C>T	c.(589-591)GAC>GAT	p.D197D		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	197	Cytoplasmic (Potential).				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						TCCTGGTGGGGTCCTTCCCTG	0.637													30	51					0	0	0.001786	0	0
A4GALT	53947	broad.mit.edu	37	22	43089219	43089219	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:43089219C>T	uc003bdb.2	-	3	1000	c.739G>A	c.(739-741)GGT>AGT	p.G247S	A4GALT_uc010gzd.2_Missense_Mutation_p.G247S	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	247	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						CCCTGGTGACCCCAGATCCAG	0.677													3	7					0	0	0.004672	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681324	44681324	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:44681324G>A	uc003bet.2	-	4	716	c.583C>T	c.(583-585)CAG>TAG	p.Q195*		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	195	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				GACGAACTCTGGAAGGTCATC	0.597													16	38					0	0	0.006122	0	0
FAM118A	55007	broad.mit.edu	37	22	45726532	45726532	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:45726532C>T	uc003bfz.3	+	6	1187	c.571C>T	c.(571-573)CAC>TAC	p.H191Y	FAM118A_uc003bga.3_Missense_Mutation_p.H191Y|FAM118A_uc011aqr.1_Missense_Mutation_p.H9Y	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	191						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CCTCCACATTCACGGCCTCTA	0.522													30	32					0	0	0.002445	0	0
SMC1B	27127	broad.mit.edu	37	22	45795022	45795022	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:45795022C>T	uc003bgc.2	-	6	1118	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K	SMC1B_uc003bgd.2_Missense_Mutation_p.E356K|SMC1B_uc003bge.1_Missense_Mutation_p.E139K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	356	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		AAAATTTCTTCCTCAATCTGC	0.378													57	96					0	0	0.003610	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657456	46657456	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:46657456C>T	uc003bhh.2	-	1	1764	c.1764G>A	c.(1762-1764)AGG>AGA	p.R588R		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	588	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CGTGCTTATCCCTAAAATTAC	0.368													20	33					0	0	0.008871	0	0
CELSR1	9620	broad.mit.edu	37	22	46807619	46807619	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:46807619G>T	uc003bhw.1	-	6	4649	c.4649C>A	c.(4648-4650)TCC>TAC	p.S1550Y	CELSR1_uc011arc.1_5'Flank	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1550	Extracellular (Potential).|Laminin G-like 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CTTTTCCCCGGACGGCCCATG	0.587													9	78					1.76689e-08	2.43006e-08	0.006214	1	0
BRD1	23774	broad.mit.edu	37	22	50181140	50181140	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:50181140G>A	uc003biv.2	-	7	2849	c.2362C>T	c.(2362-2364)CTT>TTT	p.L788F	BRD1_uc011arf.1_Missense_Mutation_p.L514F|BRD1_uc011arg.1_Missense_Mutation_p.L837F|BRD1_uc011arh.1_Missense_Mutation_p.L788F|BRD1_uc003biu.3_Missense_Mutation_p.L919F	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	788					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AACCTCGGAAGGACTACAGAC	0.552													9	16					0	0	0.006214	0	0
TTLL8	164714	broad.mit.edu	37	22	50483733	50483733	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:50483733G>A	uc011ark.1	-	6	594	c.594C>T	c.(592-594)CCC>CCT	p.P198P		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		TCTGGTCCCTGGGCTTGCTTC	0.672													16	18					0	0	0.003163	0	0
MLC1	23209	broad.mit.edu	37	22	50523268	50523268	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:50523268G>A	uc003bjg.1	-	2	337	c.64C>T	c.(64-66)CGG>TGG	p.R22W	MLC1_uc011arl.1_Missense_Mutation_p.R22W|MLC1_uc003bjh.1_Missense_Mutation_p.R22W|MLC1_uc011arm.1_Missense_Mutation_p.R22W|MLC1_uc011arn.1_Intron|MLC1_uc011aro.1_Missense_Mutation_p.R22W	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	22						basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		GGGTCTTGCCGGCCCCGCTCC	0.637													12	24					0	0	0.001368	0	0
HDAC10	83933	broad.mit.edu	37	22	50686528	50686528	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:50686528C>T	uc003bkg.2	-	13	1501	c.1128G>A	c.(1126-1128)GGG>GGA	p.G376G	HDAC10_uc003bke.2_Silent_p.G102G|HDAC10_uc003bkf.2_Silent_p.G102G|HDAC10_uc010hav.2_Silent_p.G356G|HDAC10_uc003bkh.2_Silent_p.G169G|HDAC10_uc003bki.2_Silent_p.G326G|HDAC10_uc003bkj.2_RNA|HDAC10_uc003bkk.1_Silent_p.G10G	NM_032019	NP_114408	Q969S8	HDA10_HUMAN	histone deacetylase 10 isoform 1	376					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|nucleus	histone deacetylase activity|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GTGGAGGCCTCCCCTCTGGGG	0.662													31	30					0	0	0.003271	0	0
ARSA	410	broad.mit.edu	37	22	51065138	51065138	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:51065138G>A	uc003bnb.3	-	5	982	c.729C>T	c.(727-729)GGC>GGT	p.G243G	ARSA_uc003bna.3_Silent_p.G159G|ARSA_uc003bnc.3_Silent_p.G243G|ARSA_uc003bnd.3_Silent_p.G243G|ARSA_uc003bmz.3_Silent_p.G243G|ARSA_uc010hbf.2_3'UTR	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	243						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	ATGGCCCGCGGCCTGAACGCT	0.622													8	21					0	0	0.004482	0	0
ARSA	410	broad.mit.edu	37	22	51065310	51065310	+	Silent	SNP	G	A	A	rs149026944	by1000genomes	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr22:51065310G>A	uc003bnb.3	-	4	883	c.630C>T	c.(628-630)GCC>GCT	p.A210A	ARSA_uc003bna.3_Silent_p.A126A|ARSA_uc003bnc.3_Silent_p.A210A|ARSA_uc003bnd.3_Silent_p.A210A|ARSA_uc003bmz.3_Silent_p.A210A|ARSA_uc010hbf.2_3'UTR	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	210						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity	p.A210A(1)		pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	GCTGGGCGTCGGCCATGAGGT	0.652													82	110					0	0	0.003610	0	0
GRM7	2917	broad.mit.edu	37	3	7620396	7620396	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:7620396G>A	uc003bqm.2	+	8	2077	c.1803G>A	c.(1801-1803)GGG>GGA	p.G601G	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.G601G|GRM7_uc003bql.2_Silent_p.G601G|GRM7_uc003bqn.1_Silent_p.G184G|GRM7_uc010hch.1_Silent_p.G112G	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	601	Helical; Name=1; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CAATGTTGGGGATCATTGCCA	0.532													11	68					0	0	0.000978	0	0
SETD5	55209	broad.mit.edu	37	3	9512463	9512463	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:9512463T>G	uc003brt.2	+	19	3480	c.3045T>G	c.(3043-3045)GAT>GAG	p.D1015E	SETD5_uc003bru.2_Missense_Mutation_p.D917E|SETD5_uc003brv.2_Missense_Mutation_p.D904E|SETD5_uc010hck.2_Missense_Mutation_p.D497E|SETD5_uc003brx.2_Missense_Mutation_p.D684E	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	1015										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		TACATTTGGATGGGGGATATT	0.483													3	23					0	0	0.004672	0	0
SEC13	6396	broad.mit.edu	37	3	10346776	10346776	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:10346776C>T	uc003bvn.2	-	7	768	c.649G>A	c.(649-651)GAT>AAT	p.D217N	SEC13_uc003bvl.2_Missense_Mutation_p.D149N|SEC13_uc003bvm.2_Missense_Mutation_p.D203N|SEC13_uc003bvp.2_Missense_Mutation_p.D220N|SEC13_uc003bvo.2_Missense_Mutation_p.D263N|SEC13_uc003bvq.1_Missense_Mutation_p.D203N|SEC13_uc003bvr.1_Missense_Mutation_p.D203N	NM_183352	NP_899195	P55735	SEC13_HUMAN	SEC13 protein isoform 1	217	WD 5.				COPII vesicle coating|intracellular protein transport|mitotic prometaphase|mRNA transport|post-translational protein modification|protein N-linked glycosylation via asparagine|transmembrane transport	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Nup107-160 complex	protein binding			ovary(1)	1						CAGGCCACATCTCGAACCCAG	0.617													20	19					0	0	0.001882	0	0
SLC6A11	6538	broad.mit.edu	37	3	10967746	10967747	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:10967746_10967747CC>AA	uc003bvz.2	+	9	1211_1212	c.1177_1178CC>AA	c.(1177-1179)CCG>AAG	p.P393K		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	393	Helical; Name=8; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		GCCTCTCTCCCCGCTGTGGGCC	0.639													7	196					0	0	0.004672	0	0
HRH1	3269	broad.mit.edu	37	3	11301227	11301227	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:11301227C>T	uc010hdr.2	+	2	846	c.504C>T	c.(502-504)TTC>TTT	p.F168F	HRH1_uc010hds.2_Silent_p.F168F|HRH1_uc010hdt.2_Silent_p.F168F|HRH1_uc003bwb.3_Silent_p.F168F	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	168	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	GGAATCACTTCATGCAGCAGA	0.517													23	32					0	0	0.006320	0	0
FGD5	152273	broad.mit.edu	37	3	14942551	14942551	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:14942551G>A	uc003bzc.2	+	9	3357	c.3247G>A	c.(3247-3249)GAC>AAC	p.D1083N	FGD5_uc011avk.1_Missense_Mutation_p.D1083N|FGD5_uc003bzd.2_Missense_Mutation_p.D161N	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1083	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCGTGCCAACGACAGCATGGA	0.622													34	36					0	0	0.002222	0	0
TBC1D5	9779	broad.mit.edu	37	3	17226675	17226675	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:17226675G>A	uc003cbf.2	-	19	3443	c.1778C>T	c.(1777-1779)TCC>TTC	p.S593F	TBC1D5_uc010heu.2_Missense_Mutation_p.S180F|TBC1D5_uc010hev.2_Missense_Mutation_p.S615F|TBC1D5_uc003cbe.2_Missense_Mutation_p.S593F|TBC1D5_uc010hew.1_Missense_Mutation_p.S567F	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	593						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						TTGAAGGAAGGAAATTTGGGC	0.368													23	23					0	0	0.003954	0	0
EFHB	151651	broad.mit.edu	37	3	19924167	19924167	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:19924167G>A	uc003cbl.3	-	12	2399	c.2203C>T	c.(2203-2205)CGT>TGT	p.R735C	EFHB_uc003cbm.2_Missense_Mutation_p.R605C	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	735					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						CTGATGCGACGAATTCGGGGA	0.413													8	6					0	0	0.006214	0	0
ARPP21	10777	broad.mit.edu	37	3	35781005	35781005	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:35781005C>T	uc003cgb.2	+	17	2105	c.1841C>T	c.(1840-1842)TCC>TTC	p.S614F	ARPP21_uc003cga.2_Missense_Mutation_p.S595F|ARPP21_uc011axy.1_Missense_Mutation_p.S615F|ARPP21_uc003cgf.2_Missense_Mutation_p.S450F|ARPP21_uc003cgg.2_Missense_Mutation_p.S137F	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	614	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CCTCCCATCTCCCAGCAGGTC	0.612													13	9					0	0	0.002450	0	0
DCLK3	85443	broad.mit.edu	37	3	36759579	36759579	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:36759579C>T	uc003cgi.2	-	4	2166	c.1675G>A	c.(1675-1677)GAC>AAC	p.D559N		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	559	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TCGTCCTGGTCCCTCTCAGGG	0.557													64	35					0	0	0.003610	0	0
TRANK1	9881	broad.mit.edu	37	3	36879994	36879994	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:36879994C>T	uc003cgj.2	-	10	3906	c.3604G>A	c.(3604-3606)GAA>AAA	p.E1202K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1752					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AACTGCTTTTCCCTAGGGGAA	0.438													18	12					0	0	0.007413	0	0
TRANK1	9881	broad.mit.edu	37	3	36898613	36898613	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:36898613C>T	uc003cgj.2	-	3	1120	c.818G>A	c.(817-819)GGA>GAA	p.G273E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	823					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTCGCCATTTCCCAGCTGCTG	0.512													37	24					0	0	0.004878	0	0
TRANK1	9881	broad.mit.edu	37	3	36899218	36899218	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:36899218C>T	uc003cgj.2	-	3	515	c.213G>A	c.(211-213)GGG>GGA	p.G71G		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	621					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTGAGAGCTTCCCCAGGTGGG	0.572													54	31					0	0	0.003610	0	0
SCN10A	6336	broad.mit.edu	37	3	38743465	38743465	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:38743465G>A	uc003ciq.2	-	26	4522	c.4522C>T	c.(4522-4524)CTG>TTG	p.L1508L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1508	IV.|Helical; Name=S2 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ATTTTGCCCAGAATTTTCGTC	0.448													16	10					0	0	0.006122	0	0
SCN11A	11280	broad.mit.edu	37	3	38888655	38888655	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:38888655C>T	uc011ays.1	-	26	5105	c.4906G>A	c.(4906-4908)GAA>AAA	p.E1636K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1636					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGTGTTGCTTCTGGGTCAAAC	0.393													43	20					0	0	0.008740	0	0
SCN11A	11280	broad.mit.edu	37	3	38889207	38889207	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:38889207G>A	uc011ays.1	-	26	4553	c.4354C>T	c.(4354-4356)CAG>TAG	p.Q1452*		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1452	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGTGCTCCTGATTTTCCAAG	0.507													16	4					0	0	0.007413	0	0
SCN11A	11280	broad.mit.edu	37	3	38912214	38912214	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:38912214C>T	uc011ays.1	-	22	3980	c.3781G>A	c.(3781-3783)GAT>AAT	p.D1261N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1261	III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TATATAATATCCATCCAGCCC	0.403													15	13					0	0	0.004007	0	0
XIRP1	165904	broad.mit.edu	37	3	39226013	39226013	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:39226013G>A	uc003cjk.1	-	2	5145	c.4924C>T	c.(4924-4926)CCT>TCT	p.P1642S	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P325S	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1642							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CTGGTGGAAGGGGCAGTTGAG	0.522													20	19					0	0	0.001523	0	0
MYRIP	25924	broad.mit.edu	37	3	40085592	40085592	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:40085592G>A	uc003cka.2	+	3	297	c.162G>A	c.(160-162)TCG>TCA	p.S54S	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Silent_p.S54S|MYRIP_uc010hhw.2_Missense_Mutation_p.R11Q|MYRIP_uc010hhx.1_Silent_p.S54S	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	54	RabBD.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		GCATCCTCTCGAAGCACCAGC	0.542													9	7					0	0	0.006214	0	0
CCR2	729230	broad.mit.edu	37	3	46399808	46399808	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:46399808C>T	uc003cpn.3	+	2	1275	c.790C>T	c.(790-792)CTC>TTC	p.L264F	CCR2_uc003cpm.3_Missense_Mutation_p.L264F	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	264	Helical; Name=6; (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TATTGTCATTCTCCTGAACAC	0.473													52	30					0	0	0.003610	0	0
SETD2	29072	broad.mit.edu	37	3	47164380	47164380	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:47164380G>A	uc003cqs.2	-	3	1799	c.1746C>T	c.(1744-1746)ATC>ATT	p.I582I	SETD2_uc003cqv.2_Silent_p.I571I	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	582					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		GAGACTGTTTGATTTCTTCAT	0.323			N|F|S|Mis		clear cell renal carcinoma								23	10					0	0	0.001882	0	0
USP19	10869	broad.mit.edu	37	3	49148998	49148998	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:49148998A>C	uc003cwd.1	-	20	3004	c.2843T>G	c.(2842-2844)ATG>AGG	p.M948R	USP19_uc003cwa.2_Missense_Mutation_p.M756R|USP19_uc003cvz.3_Missense_Mutation_p.M1051R|USP19_uc011bcg.1_Missense_Mutation_p.M1039R|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.M706R|USP19_uc011bch.1_Missense_Mutation_p.M1049R	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	948	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACTGGCCAGCATCTCAGAAGA	0.632													27	32					0	0	0.006320	0	0
DNAH1	25981	broad.mit.edu	37	3	52428605	52428605	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:52428605C>T	uc011bef.1	+	67	11012	c.10751C>T	c.(10750-10752)TCC>TTC	p.S3584F	DNAH1_uc003ddv.2_Missense_Mutation_p.S442F	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3649					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCAACCTTTTCCTCCTTCTCT	0.582													14	9					0	0	0.004007	0	0
STAB1	23166	broad.mit.edu	37	3	52556830	52556830	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:52556830G>A	uc003dej.2	+	62	6858	c.6784G>A	c.(6784-6786)GGC>AGC	p.G2262S	STAB1_uc003dek.1_Missense_Mutation_p.G277S|STAB1_uc003del.2_Missense_Mutation_p.G149S	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2262	Extracellular (Potential).|Link.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GCTGGCCAATGGCTCCACTGC	0.612													39	27					0	0	0.003610	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052249	55052249	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:55052249G>A	uc003dhf.2	+	35	2940	c.2892G>A	c.(2890-2892)CAG>CAA	p.Q964Q	CACNA2D3_uc003dhg.1_Silent_p.Q870Q|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	964	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AATTGAAACAGACCCTGGAGC	0.468													6	4					0	0	0.001168	0	0
LRIG1	26018	broad.mit.edu	37	3	66436534	66436534	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:66436534C>T	uc003dmx.2	-	13	1674	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K	SLC25A26_uc011bft.1_Intron|LRIG1_uc011bfu.1_Missense_Mutation_p.E174K|LRIG1_uc003dmw.2_Missense_Mutation_p.E220K|LRIG1_uc010hnz.2_Missense_Mutation_p.E270K|LRIG1_uc010hoa.2_Missense_Mutation_p.E578K	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	554	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TCCATCACTTCCCCGTCCTGC	0.562													48	22					0	0	0.003610	0	0
FAM19A1	407738	broad.mit.edu	37	3	68587941	68587941	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:68587941G>A	uc003dnd.2	+	4	510	c.294G>A	c.(292-294)ATG>ATA	p.M98I	FAM19A1_uc003dne.2_Missense_Mutation_p.M98I|FAM19A1_uc003dng.2_Missense_Mutation_p.M98I	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	98						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		GGTGTGAGATGGAGCCTTGCC	0.458													30	12					0	0	0.003755	0	0
GPR27	2850	broad.mit.edu	37	3	71804275	71804275	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:71804275C>T	uc011bge.1	+	1	1075	c.1075C>T	c.(1075-1077)CCC>TCC	p.P359S	EIF4E3_uc003dox.2_5'Flank|EIF4E3_uc011bgd.1_5'Flank|EIF4E3_uc010hoc.2_5'Flank	NM_018971	NP_061844	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	359	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		CTGCCAGAGCCCCCGGACCAC	0.642													4	5					0	0	0.000248	0	0
PDZRN3	23024	broad.mit.edu	37	3	73453318	73453318	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:73453318G>A	uc003dpl.1	-	4	1243	c.1147C>T	c.(1147-1149)CCC>TCC	p.P383S	PDZRN3_uc011bgh.1_Missense_Mutation_p.P40S|PDZRN3_uc010hoe.1_Missense_Mutation_p.P81S|PDZRN3_uc011bgf.1_Missense_Mutation_p.P100S|PDZRN3_uc011bgg.1_Missense_Mutation_p.P103S	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	383							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		AAGAGATAGGGATCCAGCACG	0.463													19	9					0	0	0.002780	0	0
CNTN3	5067	broad.mit.edu	37	3	74315713	74315714	+	Missense_Mutation	DNP	CC	TT	TT	rs141145151		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:74315713_74315714CC>TT	uc003dpm.1	-	21	2984_2985	c.2904_2905GG>AA	c.(2902-2907)GAGGAC>GAAAAC	p.D969N		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	969	Fibronectin type-III 4.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ATAATGTAGTCCTCTTTAATGG	0.406													54	29					0	0	0.004672	0	0
CNTN3	5067	broad.mit.edu	37	3	74347205	74347205	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:74347205G>A	uc003dpm.1	-	17	2384	c.2304C>T	c.(2302-2304)ATC>ATT	p.I768I		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	768	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AATATGGCACGATGCTTTCAT	0.453													29	10					0	0	0.001786	0	0
CNTN3	5067	broad.mit.edu	37	3	74349059	74349059	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:74349059C>T	uc003dpm.1	-	16	2206	c.2126G>A	c.(2125-2127)GGA>GAA	p.G709E		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	709	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TCCGCCTCCTCCATTGACTTC	0.438													37	20					0	0	0.002852	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596131	97596131	+	Silent	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:97596131T>G	uc003drx.2	+	1	313	c.249T>G	c.(247-249)GCT>GCG	p.A83A		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						ATACGTCCGCTGACAGCATGC	0.433													10	17					0	0	0.006214	0	0
OR5H15	403274	broad.mit.edu	37	3	97888212	97888212	+	Silent	SNP	C	T	T	rs62266806		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:97888212C>T	uc011bgu.1	+	1	669	c.669C>T	c.(667-669)TTC>TTT	p.F223F		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGTTCTCTTCACAGTCTTAG	0.363													7	26					0	0	0.001984	0	0
OR5H2	79310	broad.mit.edu	37	3	98002658	98002658	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:98002658G>A	uc003dsj.1	+	1	927	c.927G>A	c.(925-927)ATG>ATA	p.M309I		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TCACAAAAATGGTAAAAAGAA	0.274													10	3					0	0	0.006214	0	0
CBLB	868	broad.mit.edu	37	3	105438911	105438911	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:105438911G>A	uc003dwc.2	-	10	1709	c.1387C>T	c.(1387-1389)CGG>TGG	p.R463W	CBLB_uc011bhi.1_Missense_Mutation_p.R485W|CBLB_uc003dwd.1_Missense_Mutation_p.R463W|CBLB_uc003dwe.1_Missense_Mutation_p.R463W|CBLB_uc011bhj.1_RNA	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	463					cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						TTTGCCAACCGATTCATCATC	0.453			Mis S		AML								17	22					0	0	0.007413	0	0
CCDC54	84692	broad.mit.edu	37	3	107096542	107096542	+	Silent	SNP	G	A	A	rs141662259	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:107096542G>A	uc003dwi.1	+	1	355	c.108G>A	c.(106-108)AAG>AAA	p.K36K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	36											0						ACAAATGTAAGATTCGGCACC	0.403													12	70					0	0	0.001368	0	0
MYH15	22989	broad.mit.edu	37	3	108229341	108229341	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:108229341G>A	uc003dxa.1	-	2	154	c.97C>T	c.(97-99)CTC>TTC	p.L33F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	33	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTTCTTCTGAGGAAGGCTGCG	0.463													17	41					0	0	0.004007	0	0
MYH15	22989	broad.mit.edu	37	3	108229345	108229345	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:108229345G>A	uc003dxa.1	-	2	150	c.93C>T	c.(91-93)GCC>GCT	p.A31A		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	31	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTCTGAGGAAGGCTGCGGCTT	0.458													15	39					0	0	0.002450	0	0
KIAA1524	57650	broad.mit.edu	37	3	108270022	108270022	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:108270022G>A	uc003dxb.3	-	21	2961	c.2692C>T	c.(2692-2694)CCA>TCA	p.P898S		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	898						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						ACAGTTTCTGGATTTATTTTT	0.373													16	15					0	0	0.003163	0	0
MORC1	27136	broad.mit.edu	37	3	108818259	108818259	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:108818259C>T	uc003dxl.2	-	6	456	c.369G>A	c.(367-369)ACG>ACA	p.T123T	MORC1_uc011bhn.1_Silent_p.T123T	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	123					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CACAGGTCATCGTTTCTTCCT	0.343													9	37					0	0	0.001368	0	0
DPPA4	55211	broad.mit.edu	37	3	109047901	109047901	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:109047901G>A	uc003dxq.3	-	6	769	c.714C>T	c.(712-714)CTC>CTT	p.L238L	DPPA4_uc011bho.1_Missense_Mutation_p.P140S	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	238						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGTCTGCAGGGAGACTTTTCC	0.517													12	8					0	0	0.003163	0	0
PVRL3	25945	broad.mit.edu	37	3	110852543	110852543	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:110852543C>T	uc003dxt.1	+	6	1131	c.1131C>T	c.(1129-1131)ATC>ATT	p.I377I	PVRL3_uc003dxu.1_Intron	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	377	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						CTGCTGACATCGAGGATCTAG	0.438													16	13					0	0	0.003163	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603469	111603469	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:111603469G>A	uc010hqa.2	+	2	956	c.545G>A	c.(544-546)GGA>GAA	p.G182E	PHLDB2_uc003dyc.2_Missense_Mutation_p.G209E|PHLDB2_uc003dyd.2_Missense_Mutation_p.G182E|PHLDB2_uc003dyg.2_Missense_Mutation_p.G182E|PHLDB2_uc003dyh.2_Missense_Mutation_p.G182E|PHLDB2_uc003dye.3_Missense_Mutation_p.G182E|PHLDB2_uc003dyf.3_Missense_Mutation_p.G182E	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	182						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ATGTGGAATGGAAGTTCCCTG	0.537													18	16					0	0	0.008871	0	0
SLC9A10	285335	broad.mit.edu	37	3	111899473	111899473	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:111899473C>T	uc003dyu.2	-	22	2908	c.2686G>A	c.(2686-2688)GAT>AAT	p.D896N	SLC9A10_uc011bhu.1_Missense_Mutation_p.D159N|SLC9A10_uc010hqc.2_Missense_Mutation_p.D848N	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	896	cNMP.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TCAAATATATCATTTCCACAA	0.289													5	31					0	0	0.003080	0	0
SLC9A10	285335	broad.mit.edu	37	3	111993777	111993777	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:111993777G>A	uc003dyu.2	-	6	802	c.580C>T	c.(580-582)CAA>TAA	p.Q194*	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Nonsense_Mutation_p.Q194*	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	194					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TGTAGTCTTTGGTCAAAATCC	0.299													8	29					0	0	0.004482	0	0
BTLA	151888	broad.mit.edu	37	3	112218146	112218146	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:112218146G>A	uc003dza.3	-	1	263	c.60C>T	c.(58-60)ATC>ATT	p.I20I	BTLA_uc003dzb.3_Silent_p.I20I	NM_181780	NP_861445	Q7Z6A9	BTLA_HUMAN	B and T lymphocyte associated isoform 1	20					T cell costimulation		receptor activity				0		Acute lymphoblastic leukemia(4;1.34e-07)|all_hematologic(4;0.000361)				CCAGATATGGGATTAAGAAGA	0.433													10	26					0	0	0.006214	0	0
SLC35A5	55032	broad.mit.edu	37	3	112299536	112299536	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:112299536C>T	uc003dze.2	+	6	817	c.572C>T	c.(571-573)TCC>TTC	p.S191F		NM_017945	NP_060415	Q9BS91	S35A5_HUMAN	solute carrier family 35, member A5	191						Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1						CCTTCCAATTCCTGCCTTCTT	0.443													10	53					0	0	0.002450	0	0
WDR52	55779	broad.mit.edu	37	3	113114680	113114680	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:113114680C>T	uc003eae.1	-	15	1853	c.1807G>A	c.(1807-1809)GAA>AAA	p.E603K		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	603	WD 7.									central_nervous_system(1)	1						CTTTCCACTTCAAAGAAGAAA	0.343													13	17					0	0	0.002450	0	0
STXBP5L	9515	broad.mit.edu	37	3	120976149	120976149	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:120976149G>A	uc003eec.3	+	17	1941	c.1801G>A	c.(1801-1803)GGA>AGA	p.G601R	STXBP5L_uc011bji.1_Missense_Mutation_p.G601R	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	601	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TGCTAGTGAAGGAGTAACAAA	0.398													19	25					0	0	0.002780	0	0
POLQ	10721	broad.mit.edu	37	3	121207049	121207049	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:121207049G>A	uc003eee.3	-	16	4858	c.4729C>T	c.(4729-4731)CCT>TCT	p.P1577S	POLQ_uc003eed.2_Missense_Mutation_p.P749S	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1577					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TCTTGGACAGGAAATATATCC	0.393								DNA_polymerases_(catalytic_subunits)					15	45					0	0	0.004007	0	0
GOLGB1	2804	broad.mit.edu	37	3	121383332	121383332	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:121383332G>A	uc003eei.3	-	22	9901	c.9775C>T	c.(9775-9777)CTA>TTA	p.L3259L	GOLGB1_uc010hrc.2_Silent_p.L3269L|GOLGB1_uc003eej.3_Silent_p.L3225L	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	3259	Lumenal (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TAAGTCTATAGATGGCCCGTA	0.453													10	22					0	0	0.001368	0	0
ILDR1	286676	broad.mit.edu	37	3	121707229	121707230	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:121707229_121707230CC>TT	uc003ees.2	-	8	1731_1732	c.1625_1626GG>AA	c.(1624-1626)AGG>AAA	p.R542K	ILDR1_uc003eeq.2_Missense_Mutation_p.R510K|ILDR1_uc003eer.2_Missense_Mutation_p.R498K|ILDR1_uc010hrg.2_Missense_Mutation_p.R453K	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	542	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		TGACCACACTCCTTCCACTATG	0.45													7	19					0	0	0.004672	0	0
ADCY5	111	broad.mit.edu	37	3	123044259	123044259	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:123044259G>A	uc003egh.1	-	8	1998	c.1998C>T	c.(1996-1998)TCC>TCT	p.S666S	ADCY5_uc003egg.1_Silent_p.S299S|ADCY5_uc003egi.1_Silent_p.S225S	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	666	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TGTGCCCGATGGAGTTGGTTC	0.587													27	101					0	0	0.002836	0	0
KLF15	28999	broad.mit.edu	37	3	126070768	126070768	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:126070768G>A	uc011bkk.1	-	2	1180	c.998C>T	c.(997-999)ACC>ATC	p.T333I		NM_014079	NP_054798	Q9UIH9	KLF15_HUMAN	Kruppel-like factor 15	333	C2H2-type 1.					nucleus	DNA binding|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(114;0.147)		GCTGCTTTTGGTGTACATCTT	0.597													8	21					0	0	0.003080	0	0
PLXNA1	5361	broad.mit.edu	37	3	126751319	126751319	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:126751319C>T	uc003ejg.2	+	29	5256	c.5252C>T	c.(5251-5253)TCG>TTG	p.S1751L	PLXNA1_uc003ejh.2_Missense_Mutation_p.S419L	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1774	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		GCCTGCTTGTCGGTGGTGGCC	0.587													12	38					0	0	0.001368	0	0
GATA2	2624	broad.mit.edu	37	3	128204928	128204928	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:128204928G>A	uc003ekm.3	-	4	948	c.513C>T	c.(511-513)TTC>TTT	p.F171F	GATA2_uc003ekn.3_Silent_p.F171F|GATA2_uc003eko.2_Silent_p.F171F	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	171					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GTGGGAAGCCGAAAAGGTGGG	0.677			Mis		AML(CML blast transformation)								16	9					0	0	0.004007	0	0
NPHP3	27031	broad.mit.edu	37	3	132415580	132415580	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:132415580G>A	uc003epe.1	-	15	2243	c.2166C>T	c.(2164-2166)ATC>ATT	p.I722I	NPHP3_uc003epd.1_Intron	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	722					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						CTCACCGCGCGATCATTTTGC	0.448													13	76					0	0	0.004007	0	0
EPHB1	2047	broad.mit.edu	37	3	134670506	134670506	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:134670506C>T	uc003eqt.2	+	3	637	c.417C>T	c.(415-417)ACC>ACT	p.T139T	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Silent_p.T139T	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	139	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						AAGTAGACACCATTGCTGCAG	0.502													59	65					0	0	0.003610	0	0
PRR23B	389151	broad.mit.edu	37	3	138738801	138738801	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:138738801G>A	uc003esy.1	-	1	968	c.703C>T	c.(703-705)CCC>TCC	p.P235S		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	235	Pro-rich.									breast(1)	1						CACGGAGAGGGAGGTAGAGGT	0.662													24	11					0	0	0.003330	0	0
TRIM42	287015	broad.mit.edu	37	3	140397172	140397172	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:140397172A>G	uc003eto.1	+	1	292	c.101A>G	c.(100-102)GAG>GGG	p.E34G		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	34	Cys-rich.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TTCACCTCAGAGCGGAACTGC	0.522													75	68					0	0	0.003610	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142567294	142567294	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:142567294G>A	uc003evd.2	-	3	409	c.213C>T	c.(211-213)GTC>GTT	p.V71V		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	71	CUB 1.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						AATTGAGAACGACTACTTTTC	0.453													14	33					0	0	0.004007	0	0
TM4SF4	7104	broad.mit.edu	37	3	149205420	149205420	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:149205420G>A	uc003exd.1	+	3	510	c.279G>A	c.(277-279)ACG>ACA	p.T93T		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	93	Cytoplasmic (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			TCACCTCCACGATATTTGCTG	0.448													9	35					0	0	0.004482	0	0
DHX36	170506	broad.mit.edu	37	3	154017629	154017629	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:154017629G>A	uc003ezy.3	-	12	1628	c.1547C>T	c.(1546-1548)TCA>TTA	p.S516L	DHX36_uc010hvq.2_Missense_Mutation_p.S516L|DHX36_uc003ezz.3_Missense_Mutation_p.S516L	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	516	Helicase C-terminal.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CATAGTACCTGATTTAAACAT	0.333													33	28					0	0	0.005524	0	0
MME	4311	broad.mit.edu	37	3	154866386	154866386	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:154866386G>A	uc010hvr.1	+	16	1756	c.1545G>A	c.(1543-1545)TTG>TTA	p.L515L	MME_uc003fab.1_Silent_p.L515L|MME_uc003fac.1_Silent_p.L515L|MME_uc003fad.1_Silent_p.L515L|MME_uc003fae.1_Silent_p.L515L	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	515	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	TTCAAAATTTGAAATTCAGCC	0.328													33	36					0	0	0.008740	0	0
PLCH1	23007	broad.mit.edu	37	3	155206496	155206496	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:155206496C>T	uc011bok.1	-	19	2733	c.2456G>A	c.(2455-2457)CGA>CAA	p.R819Q	PLCH1_uc011boj.1_Missense_Mutation_p.R819Q|PLCH1_uc011bol.1_Missense_Mutation_p.R801Q	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	819	C2.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AACAAAGTCTCGTCCAATGGG	0.453													7	13					0	0	0.001984	0	0
PLCH1	23007	broad.mit.edu	37	3	155314033	155314033	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:155314033C>T	uc011bok.1	-	2	455	c.178G>A	c.(178-180)GAG>AAG	p.E60K	PLCH1_uc011boj.1_Missense_Mutation_p.E60K|PLCH1_uc011bol.1_Missense_Mutation_p.E42K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	60	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTGCCTTCTCACTCTTCCTA	0.483													46	139					0	0	0.003610	0	0
SLC33A1	9197	broad.mit.edu	37	3	155571095	155571095	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:155571095A>C	uc003fan.3	-	1	1073	c.692T>G	c.(691-693)TTG>TGG	p.L231W	SLC33A1_uc003fao.1_Missense_Mutation_p.L231W	NM_004733	NP_004724	O00400	ACATN_HUMAN	acetyl-coenzyme A transporter	231	Helical; (Potential).				cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			ovary(2)|large_intestine(1)|pancreas(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GGCCAAAAACAAAACATTGCC	0.428													8	45					0	0	0.004482	0	0
TIPARP	25976	broad.mit.edu	37	3	156422824	156422824	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:156422824C>T	uc003fav.2	+	6	2126	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F	TIPARP_uc003faw.2_Silent_p.F626F	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	626	PARP catalytic.						NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			tggataatttctttgagcctc	0.269													8	25					0	0	0.003080	0	0
SCHIP1	29970	broad.mit.edu	37	3	159605513	159605513	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:159605513C>T	uc003fcs.1	+	5	1079	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	SCHIP1_uc003fcq.1_Missense_Mutation_p.S414F|SCHIP1_uc003fcr.1_Missense_Mutation_p.S327F|SCHIP1_uc003fct.1_Missense_Mutation_p.S325F|SCHIP1_uc010hvz.1_Missense_Mutation_p.S298F|SCHIP1_uc003fcu.1_Missense_Mutation_p.S95F|SCHIP1_uc003fcv.1_Missense_Mutation_p.S111F	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	338						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			CAGAGTTCTTCCTATTCTGAT	0.468													38	142					0	0	0.002522	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907736	164907736	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:164907736T>A	uc003fej.3	-	2	1327	c.883A>T	c.(883-885)ATT>TTT	p.I295F	SLITRK3_uc003fek.2_Missense_Mutation_p.I295F	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	295	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GAATGTGGAATTCCCAAACTA	0.453										HNSCC(40;0.11)			15	58					0	0	0.003163	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907738	164907738	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:164907738C>T	uc003fej.3	-	2	1325	c.881G>A	c.(880-882)GGA>GAA	p.G294E	SLITRK3_uc003fek.2_Missense_Mutation_p.G294E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	294	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ATGTGGAATTCCCAAACTAGC	0.453										HNSCC(40;0.11)			14	58					0	0	0.003163	0	0
WDR49	151790	broad.mit.edu	37	3	167254743	167254743	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:167254743G>A	uc003fev.1	-	7	1119	c.813C>T	c.(811-813)ATC>ATT	p.I271I	WDR49_uc003feu.1_Silent_p.I96I|WDR49_uc011bpd.1_Silent_p.I335I|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	271										large_intestine(1)|ovary(1)|skin(1)	3						CTTCAGGCTGGATGAAAAATT	0.383													7	27					0	0	0.001984	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169550939	169550939	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:169550939G>A	uc003fgb.2	+	4	1498	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	500											0						ATACCTCAAGGAAAACAGAAA	0.408													10	12					0	0	0.006214	0	0
SAMD7	344658	broad.mit.edu	37	3	169644396	169644396	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:169644396C>T	uc003fgd.2	+	6	613	c.346C>T	c.(346-348)CCC>TCC	p.P116S	SAMD7_uc003fge.2_Missense_Mutation_p.P116S|SAMD7_uc011bpo.1_Missense_Mutation_p.P17S	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	116										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			AAAAATTAATCCCAAGGGACT	0.468													13	26					0	0	0.001368	0	0
TNFSF10	8743	broad.mit.edu	37	3	172224297	172224297	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:172224297G>A	uc003fid.2	-	5	926	c.831C>T	c.(829-831)GCC>GCT	p.A277A	TNFSF10_uc003fie.2_3'UTR	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	277	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CAACTAAAAAGGCCCCAAAAA	0.358													14	15					0	0	0.004990	0	0
TNFSF10	8743	broad.mit.edu	37	3	172224405	172224405	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:172224405G>A	uc003fid.2	-	5	818	c.723C>T	c.(721-723)TCC>TCT	p.S241S	TNFSF10_uc003fie.2_3'UTR	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	241	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CTTGATAGATGGAATAGAGTC	0.333													18	44					0	0	0.001523	0	0
PEX5L	51555	broad.mit.edu	37	3	179593207	179593207	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:179593207G>A	uc003fki.1	-	6	694	c.564C>T	c.(562-564)ACC>ACT	p.T188T	PEX5L_uc011bqd.1_Silent_p.T145T|PEX5L_uc011bqe.1_5'UTR|PEX5L_uc011bqf.1_Silent_p.T80T|PEX5L_uc003fkj.1_Silent_p.T153T|PEX5L_uc010hxd.1_Silent_p.T186T|PEX5L_uc011bqg.1_Silent_p.T164T|PEX5L_uc011bqh.1_Silent_p.T129T	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	188					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			GATGTCCCTTGGTATTTCGAT	0.423													9	46					0	0	0.006214	0	0
ECE2	9718	broad.mit.edu	37	3	184009212	184009212	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:184009212C>T	uc003fni.3	+	18	2498	c.2460C>T	c.(2458-2460)TTC>TTT	p.F820F	ECE2_uc011brh.1_3'UTR|ECE2_uc003fnl.3_Silent_p.F748F|ECE2_uc003fnm.3_Silent_p.F702F|ECE2_uc003fnk.3_Silent_p.F673F|ECE2_uc011bri.1_Silent_p.F735F	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	820	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGCTCTTCTTCGTGGGATTTG	0.592													21	32					0	0	0.002299	0	0
CLCN2	1181	broad.mit.edu	37	3	184069834	184069835	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:184069834_184069835GG>AA	uc003foi.2	-	22	2505_2506	c.2381_2382CC>TT	c.(2380-2382)CCC>CTT	p.P794L	CLCN2_uc003foh.2_Intron|CLCN2_uc010hya.1_Missense_Mutation_p.P777L|CLCN2_uc011brl.1_Missense_Mutation_p.P794L|CLCN2_uc011brm.1_Missense_Mutation_p.P750L	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	794	CBS 2.|Cytoplasmic (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	CCAGCTGGAAGGGAGCAGGATC	0.564													40	109					0	0	0.004672	0	0
SENP2	59343	broad.mit.edu	37	3	185341799	185341799	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:185341799G>A	uc003fpn.2	+	15	1711	c.1540G>A	c.(1540-1542)GAT>AAT	p.D514N	SENP2_uc011brv.1_Missense_Mutation_p.D504N|SENP2_uc011brw.1_Missense_Mutation_p.D327N	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	514	Protease.				mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GTATTTACAGGATGAAAGTAA	0.348													98	124					0	0	0.003610	0	0
TBCCD1	55171	broad.mit.edu	37	3	186272336	186272336	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:186272336G>A	uc003fqg.2	-	6	1380	c.1251C>T	c.(1249-1251)GCC>GCT	p.A417A	TBCCD1_uc011bry.1_Silent_p.A417A|TBCCD1_uc003fqh.2_Silent_p.A321A	NM_018138	NP_060608	Q9NVR7	TBCC1_HUMAN	TBCC domain containing 1	417	C-CAP/cofactor C-like.				cell morphogenesis|maintenance of centrosome location|maintenance of Golgi location|regulation of cell migration|regulation of cell shape	spindle pole centrosome	binding			large_intestine(1)|ovary(1)	2	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.3e-21)	GBM - Glioblastoma multiforme(93;0.0474)		TATGAAAAGGGGCAAAAGTTA	0.473													11	28					0	0	0.000978	0	0
MASP1	5648	broad.mit.edu	37	3	186938850	186938850	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:186938850C>T	uc003frh.1	-	15	2214	c.1882G>A	c.(1882-1884)GAC>AAC	p.D628N		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	628	Peptidase S1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CAGATCATGTCCCTGGTCACT	0.547													11	15					0	0	0.001368	0	0
BCL6	604	broad.mit.edu	37	3	187446943	187446943	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:187446943G>A	uc003frp.3	-	5	1707	c.1250C>T	c.(1249-1251)CCC>CTC	p.P417L	BCL6_uc011bsf.1_Missense_Mutation_p.P417L|BCL6_uc010hza.2_Missense_Mutation_p.P315L|BCL6_uc003frq.1_Missense_Mutation_p.P417L	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	417					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		AGGCTCCATGGGTGGCTGGCA	0.627			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								15	69					0	0	0.001523	0	0
TP63	8626	broad.mit.edu	37	3	189526122	189526122	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:189526122C>T	uc003fry.2	+	4	475	c.386C>T	c.(385-387)TCG>TTG	p.S129L	TP63_uc003frx.2_Missense_Mutation_p.S129L|TP63_uc003frz.2_Missense_Mutation_p.S129L|TP63_uc010hzc.1_Missense_Mutation_p.S129L|TP63_uc003fsa.2_Missense_Mutation_p.S35L|TP63_uc003fsb.2_Missense_Mutation_p.S35L|TP63_uc003fsc.2_Missense_Mutation_p.S35L|TP63_uc003fsd.2_Missense_Mutation_p.S35L|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Missense_Mutation_p.S10L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	129			S -> L.		anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		AACGGCTCCTCGTCCACCAGT	0.587									Hay-Wells_syndrome	HNSCC(45;0.13)			25	23					0	0	0.005443	0	0
TP63	8626	broad.mit.edu	37	3	189608665	189608665	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:189608665C>T	uc003fry.2	+	13	1829	c.1740C>T	c.(1738-1740)TCC>TCT	p.S580S	TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Silent_p.S486S|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Silent_p.S401S	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	580	SAM.		S -> P (in EDRH).		anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		AGCATTACTCCATGGATGTAA	0.418									Hay-Wells_syndrome	HNSCC(45;0.13)			24	32					0	0	0.002780	0	0
LEPREL1	55214	broad.mit.edu	37	3	189702340	189702340	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:189702340G>A	uc011bsk.1	-	7	1616	c.1228C>T	c.(1228-1230)CGG>TGG	p.R410W	LEPREL1_uc003fsg.2_Missense_Mutation_p.R229W	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	410					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGGACTTACCGATTCTCATCC	0.313													19	68					0	0	0.001882	0	0
FGF12	2257	broad.mit.edu	37	3	192078284	192078284	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:192078284C>T	uc003fsx.2	-	2	1069	c.243G>A	c.(241-243)CAG>CAA	p.Q81Q	FGF12_uc003fsy.2_Silent_p.Q19Q	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	81					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		GGAAGTATCCCTGCTGGCTGA	0.403													31	48					0	0	0.004289	0	0
ATP13A5	344905	broad.mit.edu	37	3	193023395	193023395	+	Silent	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:193023395A>C	uc011bsq.1	-	23	2631	c.2631T>G	c.(2629-2631)CCT>CCG	p.P877P		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	877					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TAGAGGTAAAAGGGGATGCCA	0.388													9	79					0	0	0.000978	0	0
CPN2	1370	broad.mit.edu	37	3	194062013	194062013	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:194062013C>T	uc003fts.2	-	2	1509	c.1419G>A	c.(1417-1419)CAG>CAA	p.Q473Q		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	473					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CTGCCCTTTCCTGCACAGCCA	0.662													13	46					0	0	0.001855	0	0
MUC4	4585	broad.mit.edu	37	3	195516076	195516076	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr3:195516076G>A	uc011bto.1	-	2	2835	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.S674F	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	797	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGACCCTGAGGAGGCCGGTTC	0.607													31	36					0	0	0.002096	0	0
ZNF721	170960	broad.mit.edu	37	4	437781	437781	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:437781G>A	uc003gag.2	-	3	1166	c.475C>T	c.(475-477)CAT>TAT	p.H159Y	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.H191Y|ZNF721_uc010ibe.2_Missense_Mutation_p.H147Y	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	159						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCAGTATGAATTTTCTTG	0.393													42	76					0	0	0.003610	0	0
HGFAC	3083	broad.mit.edu	37	4	3449220	3449220	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:3449220C>T	uc003ghc.2	+	11	1360	c.1357C>T	c.(1357-1359)CCC>TCC	p.P453S	HGFAC_uc010icw.2_Missense_Mutation_p.P460S	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	453	Peptidase S1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CTTGCACAGCCCCCCCAGGGA	0.672													17	39					0	0	0.004990	0	0
C4orf50	389197	broad.mit.edu	37	4	5961349	5961349	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:5961349G>A	uc003git.1	-	7	674	c.584C>T	c.(583-585)CCT>CTT	p.P195L		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	195										pancreas(2)|breast(1)	3						CAAGGACAGAGGGAGCTGCAG	0.507													8	20					0	0	0.004482	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6349705	6349705	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:6349705C>T	uc003gjc.2	-	6	1028	c.658G>A	c.(658-660)GAC>AAC	p.D220N	PPP2R2C_uc003gjb.2_Missense_Mutation_p.D203N|PPP2R2C_uc011bwd.1_Missense_Mutation_p.D213N|PPP2R2C_uc011bwe.1_Missense_Mutation_p.D213N|PPP2R2C_uc003gja.2_Missense_Mutation_p.D220N|PPP2R2C_uc003gjd.1_Missense_Mutation_p.D308N	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	220	WD 4.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TCCGTAAGGTCCTCCATGTTG	0.612													31	36					0	0	0.006230	0	0
HTRA3	94031	broad.mit.edu	37	4	8304194	8304194	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:8304194G>A	uc003gla.2	+	7	1260	c.1056G>A	c.(1054-1056)TGG>TGA	p.W352*		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	352					proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						TTCCAGACTGGAAGAAGCGCT	0.478													21	35					0	0	0.004656	0	0
SLC34A2	10568	broad.mit.edu	37	4	25673286	25673286	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:25673286G>A	uc003grr.2	+	9	1072	c.991G>A	c.(991-993)GAT>AAT	p.D331N	SLC34A2_uc003grs.2_Missense_Mutation_p.D330N|SLC34A2_uc010iev.2_Missense_Mutation_p.D330N	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	331	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CTGTTGGACGGATGGCATCCA	0.507													59	93					0	0	0.003610	0	0
CCKAR	886	broad.mit.edu	37	4	26491823	26491823	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:26491823C>T	uc003gse.1	-	1	220	c.67G>A	c.(67-69)GAA>AAA	p.E23K		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	23	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	GTCTCATTTTCGAGCCCGAGT	0.483													11	33					0	0	0.003163	0	0
PCDH7	5099	broad.mit.edu	37	4	30725411	30725411	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:30725411C>T	uc003gsk.1	+	1	3375	c.2367C>T	c.(2365-2367)TTC>TTT	p.F789F	PCDH7_uc011bxw.1_Silent_p.F742F|PCDH7_uc011bxx.1_Silent_p.F789F	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	789	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						GAAATCCCTTCAAGCTGTTTG	0.463													7	28					0	0	0.001984	0	0
TLR6	10333	broad.mit.edu	37	4	38829514	38829514	+	Silent	SNP	C	T	T	rs56325560		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:38829514C>T	uc003gtm.2	-	1	1647	c.1581G>A	c.(1579-1581)GGG>GGA	p.G527G	TLR6_uc010ifg.1_Silent_p.G527G	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	527	Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						ATGGATTGTCCCCTGCTTTTA	0.413													67	157					0	0	0.003610	0	0
KCTD8	386617	broad.mit.edu	37	4	44450305	44450305	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:44450305G>A	uc003gwu.2	-	1	520	c.236C>T	c.(235-237)CCC>CTC	p.P79L		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	79	BTB.					cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						gccgccACGGGGACTAGAGGG	0.537										HNSCC(17;0.042)			9	8					0	0	0.006214	0	0
GABRG1	2565	broad.mit.edu	37	4	46043230	46043230	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:46043230C>T	uc003gxb.2	-	9	1325	c.1173G>A	c.(1171-1173)ATG>ATA	p.M391I		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	391	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		AAATATTATTCATTGGAATCA	0.393													12	30					0	0	0.002450	0	0
CNGA1	1259	broad.mit.edu	37	4	47938625	47938625	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:47938625C>T	uc003gxt.3	-	11	2152	c.1886G>A	c.(1885-1887)CGA>CAA	p.R629Q	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.R698Q	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	629	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						CCCCTCCATTCGAGTAACCTT	0.433													37	95					0	0	0.006999	0	0
FRYL	285527	broad.mit.edu	37	4	48564928	48564928	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:48564928T>G	uc003gyh.1	-	32	4279	c.3674A>C	c.(3673-3675)GAA>GCA	p.E1225A	FRYL_uc003gyk.2_Missense_Mutation_p.E1225A|FRYL_uc003gyi.1_Missense_Mutation_p.E114A	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1225					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CATAGCAACTTCATAGATACT	0.294													53	81					0	0	0.003610	0	0
SPATA18	132671	broad.mit.edu	37	4	52945915	52945915	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:52945915G>A	uc003gzl.2	+	9	1463	c.1185G>A	c.(1183-1185)GTG>GTA	p.V395V	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.V363V|SPATA18_uc003gzk.1_Silent_p.V395V	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	395					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TTCAGGATGTGATCCGAGCCA	0.428													58	106					0	0	0.003610	0	0
LNX1	84708	broad.mit.edu	37	4	54327130	54327130	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:54327130C>T	uc003hag.3	-	11	2387	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.E615K|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	711	PDZ 4.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CCTTTAAGTTCTTTCAGCAGT	0.348													25	39					0	0	0.003954	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139809	55139809	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:55139809C>T	uc003han.3	+	10	1801	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Silent_p.F384F|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	490	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTGTGACTTTCGCCAAAGTGG	0.532			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			28	46					0	0	0.001786	0	0
TECRL	253017	broad.mit.edu	37	4	65145874	65145874	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:65145874C>T	uc003hcv.2	-	12	1117	c.1008G>A	c.(1006-1008)TGG>TGA	p.W336*	TECRL_uc010ihi.2_RNA	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	336					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						TCTTTTGTGCCCACAAAGACA	0.244													7	13					0	0	0.003080	0	0
TECRL	253017	broad.mit.edu	37	4	65147277	65147277	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:65147277C>T	uc003hcv.2	-	10	942	c.833G>A	c.(832-834)GGA>GAA	p.G278E	TECRL_uc010ihi.2_RNA	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	278					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						GGCATTGTTTCCTTTTTCAAA	0.338													9	18					0	0	0.006214	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682129	69682129	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:69682129C>T	uc003hee.2	+	1	417	c.392C>T	c.(391-393)TCA>TTA	p.S131L	UGT2B10_uc011cam.1_Missense_Mutation_p.S131L	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	131					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GATGTAGTTTCAAATAAGAAA	0.328													16	14					0	0	0.003163	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146905	70146905	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:70146905G>A	uc003hej.2	+	1	689	c.687G>A	c.(685-687)ATG>ATA	p.M229I	UGT2B28_uc010ihr.2_Missense_Mutation_p.M229I	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	229					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TGTGTGATATGAAGAAGTGGG	0.318													17	6					0	0	0.004990	0	0
UGT2B4	7363	broad.mit.edu	37	4	70346577	70346577	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:70346577C>T	uc003hek.3	-	6	1409	c.1362G>A	c.(1360-1362)GTG>GTA	p.V454V	UGT2B4_uc011cap.1_Silent_p.V318V|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	454					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CAAGGGGCTTCACTGGTTGAT	0.403													29	69					0	0	0.007291	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361510	70361510	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:70361510C>T	uc003hek.3	-	1	117	c.70G>A	c.(70-72)GGA>AGA	p.G24R	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.G24R	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	24					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AGCACCTTTCCACAACTCCCA	0.458													46	80					0	0	0.002522	0	0
SULT1B1	27284	broad.mit.edu	37	4	70599889	70599889	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:70599889C>T	uc003hen.2	-	5	767	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	157					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						AGATATTCTTCCCAGGTACCA	0.299													6	11					0	0	0.003080	0	0
AMBN	258	broad.mit.edu	37	4	71465260	71465260	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:71465260G>A	uc003hfl.2	+	5	266	c.191G>A	c.(190-192)AGA>AAA	p.R64K		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	64					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			TAGTATTCTAGATACGGCTTT	0.303													9	20					0	0	0.008291	0	0
AMBN	258	broad.mit.edu	37	4	71471911	71471911	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:71471911G>A	uc003hfl.2	+	13	883	c.808G>A	c.(808-810)GAA>AAA	p.E270K		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	270					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			GGGCGGGAGAGAAGACCCAAT	0.502													18	38					0	0	0.007413	0	0
ENAM	10117	broad.mit.edu	37	4	71500187	71500188	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:71500187_71500188CC>TT	uc011caw.1	+	6	654_655	c.373_374CC>TT	c.(373-375)CCC>TTC	p.P125F		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	125					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AACCCAGAAACCCAACCAGACT	0.53													16	43					0	0	0.004672	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660890	77660890	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:77660890G>A	uc011cbx.1	+	5	2517	c.1564G>A	c.(1564-1566)GGA>AGA	p.G522R	SHROOM3_uc011cbz.1_Missense_Mutation_p.G346R|SHROOM3_uc003hkf.1_Missense_Mutation_p.G397R|SHROOM3_uc003hkg.2_Missense_Mutation_p.G300R	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	522					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GAACCAGAATGGATCTGGCAG	0.537													27	55					0	0	0.002445	0	0
C4orf22	255119	broad.mit.edu	37	4	81866048	81866048	+	Silent	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:81866048T>A	uc003hmf.2	+	5	610	c.561T>A	c.(559-561)CTT>CTA	p.L187L	C4orf22_uc010ijp.2_Silent_p.L204L	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	187										skin(2)	2						AAGGCTTACTTTTCAGATACA	0.333													30	36					0	0	0.002096	0	0
DSPP	1834	broad.mit.edu	37	4	88533702	88533702	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:88533702G>A	uc003hqu.2	+	4	484	c.364G>A	c.(364-366)GAT>AAT	p.D122N		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	122					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		ATATGGTCATGATGGAATACA	0.428													11	13					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	4	88814998	88814998	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:88814998C>T	uc010iko.1	+	4	1625	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		TCGGGCTTTTCCCTTGAGGAT	0.532													93	126					0	0	0.003610	0	0
MMRN1	22915	broad.mit.edu	37	4	90816651	90816651	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:90816651C>T	uc003hst.2	+	1	600	c.529C>T	c.(529-531)CGA>TGA	p.R177*	MMRN1_uc010iku.2_Nonsense_Mutation_p.R143*	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	177					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		cGTGGGAAATCGAGCCCCACG	0.353													6	30					0	0	0.001984	0	0
GRID2	2895	broad.mit.edu	37	4	94031949	94031949	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:94031949G>A	uc011cdt.1	+	4	838	c.580G>A	c.(580-582)GAT>AAT	p.D194N	GRID2_uc010ikx.2_Missense_Mutation_p.D194N|GRID2_uc011cdu.1_Missense_Mutation_p.D99N|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	194	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GCAGGGAATGGATGTTGCACT	0.393													48	76					0	0	0.003610	0	0
UNC5C	8633	broad.mit.edu	37	4	96091445	96091445	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:96091445C>T	uc003htp.1	-	15	2644	c.2490G>A	c.(2488-2490)GCG>GCA	p.A830A	uc003hto.2_5'Flank	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	830	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TGATGGTGTTCGCAGGATCCA	0.552													49	115					0	0	0.003610	0	0
C4orf37	285555	broad.mit.edu	37	4	99064228	99064228	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:99064228G>A	uc003htt.1	-	1	164	c.74C>T	c.(73-75)TCC>TTC	p.S25F		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	25											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		TACCTGGTAGGATCCAGGACC	0.597											OREG0016268	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	10					0	0	0.006214	0	0
ADH1B	125	broad.mit.edu	37	4	100237184	100237184	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:100237184G>A	uc003hus.3	-	5	522	c.438C>T	c.(436-438)ACC>ACT	p.T146T	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.T106T|ADH1B_uc011ceh.1_Intron|ADH1B_uc011cei.1_Silent_p.T106T	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	146					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACTGGGAGAAGGTGCTGGTGC	0.587													27	37					0	0	0.005443	0	0
ADH1C	126	broad.mit.edu	37	4	100268973	100268973	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:100268973C>T	uc003huu.2	-	2	134	c.49G>A	c.(49-51)GAG>AAG	p.E17K		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	17					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TTCTTTAACTCCCATAGCACA	0.353									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				18	38					0	0	0.006122	0	0
MTTP	4547	broad.mit.edu	37	4	100534212	100534212	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:100534212G>A	uc003hvc.3	+	16	2388	c.2132G>A	c.(2131-2133)AGT>AAT	p.S711N	MTTP_uc011cej.1_Missense_Mutation_p.S738N	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	711					lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AACGGATACAGTGATTTGATG	0.443													23	38					0	0	0.002780	0	0
CENPE	1062	broad.mit.edu	37	4	104065637	104065637	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:104065637C>T	uc003hxb.1	-	33	5086	c.4996G>A	c.(4996-4998)GAG>AAG	p.E1666K	CENPE_uc003hxc.1_Missense_Mutation_p.E1641K	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1666	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CTTATATTCTCCGTTTCTATG	0.388													49	76					0	0	0.003610	0	0
TACR3	6870	broad.mit.edu	37	4	104640463	104640463	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:104640463G>A	uc003hxe.1	-	1	513	c.370C>T	c.(370-372)CTT>TTT	p.L124F		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	124	Helical; Name=2; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AGGTTCACAAGGAAGTAGTTG	0.537													17	34					0	0	0.004007	0	0
TET2	54790	broad.mit.edu	37	4	106157143	106157143	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:106157143C>T	uc003hxk.2	+	3	2430	c.2044C>T	c.(2044-2046)CAT>TAT	p.H682Y	TET2_uc011cez.1_Missense_Mutation_p.H703Y|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.H682Y|TET2_uc003hxi.1_Missense_Mutation_p.H682Y	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	682	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.H682fs*11(1)		haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CACTAGATTTCATTTTCAACA	0.428			Mis N|F		MDS								19	41					0	0	0.001523	0	0
COL25A1	84570	broad.mit.edu	37	4	109784531	109784531	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:109784531C>T	uc003hze.1	-	20	1627	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	COL25A1_uc003hzg.2_Missense_Mutation_p.E366K|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.E147K	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	366	Extracellular (Potential).|Collagen-like 4.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GGCCCTGCTTCCCCCCGTTCA	0.498													15	28					0	0	0.008871	0	0
LRIT3	345193	broad.mit.edu	37	4	110791480	110791480	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:110791480G>A	uc003hzx.3	+	3	1633	c.1440G>A	c.(1438-1440)AAG>AAA	p.K480K	LRIT3_uc003hzw.3_Silent_p.K342K	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	480	Fibronectin type-III.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		ATGGTGGGAAGGACCTGCTGC	0.478													40	57					0	0	0.003610	0	0
PITX2	5308	broad.mit.edu	37	4	111539353	111539353	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:111539353G>A	uc003iad.2	-	5	1464	c.882C>T	c.(880-882)TTC>TTT	p.F294F	PITX2_uc003iac.2_Silent_p.F301F|PITX2_uc003iae.2_Silent_p.F248F|PITX2_uc010iml.2_Silent_p.F165F|PITX2_uc003iaf.2_Silent_p.F294F	NM_153426	NP_700475	Q99697	PITX2_HUMAN	paired-like homeodomain transcription factor 2	294					determination of left/right symmetry|organ morphogenesis	transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription factor binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00222)		TGGCGTAGCCGAAGCTGGAGT	0.627													14	43					0	0	0.001855	0	0
NDST4	64579	broad.mit.edu	37	4	115997728	115997728	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:115997728C>T	uc003ibu.2	-	2	1144	c.465G>A	c.(463-465)GTG>GTA	p.V155V	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	155	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		CACTGTATTCCACACAGTATT	0.323													19	43					0	0	0.002780	0	0
FABP2	2169	broad.mit.edu	37	4	120241869	120241869	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:120241869C>T	uc003icw.2	-	2	255	c.196G>A	c.(196-198)GGT>AGT	p.G66S		NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2	66							fatty acid binding			ovary(1)	1						AAGGTGACACCAAGTTCAAAA	0.323													14	26					0	0	0.002299	0	0
EXOSC9	5393	broad.mit.edu	37	4	122728768	122728768	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:122728768T>A	uc003iea.2	+	6	704	c.596T>A	c.(595-597)TTC>TAC	p.F199Y	EXOSC9_uc003idz.2_Missense_Mutation_p.F199Y|EXOSC9_uc003ieb.2_Missense_Mutation_p.F183Y|EXOSC9_uc010inp.1_RNA	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	199	ARE binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						TTTGCCTTTTTCCAGCAAGGG	0.363													13	44					0	0	0.003163	0	0
KIAA1109	84162	broad.mit.edu	37	4	123140648	123140648	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:123140648C>T	uc003ieh.2	+	19	2446	c.2401C>T	c.(2401-2403)CAT>TAT	p.H801Y	KIAA1109_uc003iei.1_Missense_Mutation_p.H555Y|KIAA1109_uc010ins.1_Missense_Mutation_p.H145Y|KIAA1109_uc003iej.1_Missense_Mutation_p.H186Y	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	801					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CAAGTCAATTCATCCACTTGC	0.413													45	58					0	0	0.003610	0	0
SCLT1	132320	broad.mit.edu	37	4	129867244	129867244	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:129867244A>T	uc003igp.2	-	16	1863	c.1357T>A	c.(1357-1359)TTC>ATC	p.F453I	SCLT1_uc003ign.2_Missense_Mutation_p.F117I|SCLT1_uc003igo.2_Missense_Mutation_p.F63I|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	453	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						GAAACCAGGAATCTTTGGTGC	0.353													11	22					0	0	0.000978	0	0
SLC7A11	23657	broad.mit.edu	37	4	139100404	139100404	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:139100404C>T	uc011chb.1	-	11	1691	c.1411G>A	c.(1411-1413)GAC>AAC	p.D471N		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	471	Cytoplasmic (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	GGTTTCTTGTCCCATATAATA	0.418													16	27					0	0	0.001882	0	0
MAML3	55534	broad.mit.edu	37	4	140811492	140811492	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:140811492G>A	uc003ihz.1	-	2	1850	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	366					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					AGACATGTGCGAAGGGAGAGT	0.562													37	53					0	0	0.005524	0	0
TBC1D9	23158	broad.mit.edu	37	4	141590794	141590794	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:141590794C>T	uc010ioj.2	-	8	1703	c.1431G>A	c.(1429-1431)CCG>CCA	p.P477P		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	477						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CCACCAATTTCGGGTTGAACT	0.463													10	13					0	0	0.008291	0	0
IL15	3600	broad.mit.edu	37	4	142649103	142649103	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:142649103T>A	uc003iis.2	+	6	575	c.206T>A	c.(205-207)ATT>AAT	p.I69N	IL15_uc003iit.2_Missense_Mutation_p.I69N|IL15_uc010iol.2_RNA|IL15_uc003iiu.2_RNA	NM_000585	NP_000576	P40933	IL15_HUMAN	interleukin 15 preproprotein	69					cell-cell signaling|immune response|positive regulation of interleukin-17 production	endosome|extracellular space|Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	cytokine activity|cytokine receptor binding|signal transducer activity				0	all_hematologic(180;0.158)					TCTATGCATATTGATGCTACT	0.254													12	24					0	0	0.002450	0	0
TTC29	83894	broad.mit.edu	37	4	147824788	147824788	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:147824788C>T	uc003ikw.3	-	6	721	c.494G>A	c.(493-495)CGA>CAA	p.R165Q	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.R191Q|TTC29_uc010ipd.1_Missense_Mutation_p.R165Q	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	165							binding				0	all_hematologic(180;0.151)					CTTAAAACATCGTTCATAGAA	0.413													20	23					0	0	0.008871	0	0
PET112L	5188	broad.mit.edu	37	4	152626406	152626406	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:152626406C>T	uc003iml.2	-	7	905	c.893G>A	c.(892-894)AGG>AAG	p.R298K	PET112L_uc003imm.3_Missense_Mutation_p.R298K	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	298						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ATTGATTTGCCTCTGAATTTC	0.383													9	28					0	0	0.008291	0	0
FGA	2243	broad.mit.edu	37	4	155508735	155508735	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:155508735C>T	uc003iod.1	-	4	497	c.439G>A	c.(439-441)GAA>AAA	p.E147K	FGA_uc003ioe.1_Missense_Mutation_p.E147K|FGA_uc003iof.1_Missense_Mutation_p.E147K	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	147	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TGTACTTTTTCTATGACTTTG	0.418													19	41					0	0	0.008871	0	0
RBM46	166863	broad.mit.edu	37	4	155719008	155719008	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:155719008G>A	uc003ioo.2	+	3	370	c.197G>A	c.(196-198)GGA>GAA	p.G66E	RBM46_uc011cim.1_Missense_Mutation_p.G66E|RBM46_uc003iop.1_Missense_Mutation_p.G66E	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	66	RRM 1.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GTTTTTGTAGGAAAAATACCT	0.363													20	38					0	0	0.003330	0	0
PDGFC	56034	broad.mit.edu	37	4	157689054	157689054	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:157689054C>T	uc003iph.1	-	5	1283	c.792G>A	c.(790-792)AAG>AAA	p.K264K	PDGFC_uc003ipi.1_Silent_p.K101K|PDGFC_uc011cis.1_Silent_p.K101K|PDGFC_uc011cir.1_Silent_p.K108K	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	264					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TATCGGTTCTCTTTAGTTCTT	0.448													27	76					0	0	0.007291	0	0
GLRB	2743	broad.mit.edu	37	4	158057641	158057641	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:158057641C>T	uc003ipj.2	+	5	520	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	106	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TTAACATCTTCCTGAGACAAA	0.408													13	30					0	0	0.001368	0	0
GRIA2	2891	broad.mit.edu	37	4	158281184	158281185	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:158281184_158281185CC>AT	uc003ipm.3	+	13	2639_2640	c.2180_2181CC>AT	c.(2179-2181)TCC>TAT	p.S727Y	GRIA2_uc011cit.1_Missense_Mutation_p.S680Y|GRIA2_uc003ipl.3_Missense_Mutation_p.S727Y|GRIA2_uc003ipk.3_Missense_Mutation_p.S680Y|GRIA2_uc010iqh.1_RNA|GRIA2_uc011ciu.1_Missense_Mutation_p.S37Y|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_Missense_Mutation_p.S37Y|GRIA2_uc011ciy.1_Missense_Mutation_p.S37Y|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	727	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TTGTTGGAGTCCACGATGAACG	0.515													19	37					0	0	0.004672	0	0
GRIA2	2891	broad.mit.edu	37	4	158284117	158284117	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:158284117C>T	uc003ipm.3	+	15	3032	c.2573C>T	c.(2572-2574)TCT>TTT	p.S858F	GRIA2_uc011cit.1_Missense_Mutation_p.S811F|GRIA2_uc003ipl.3_Missense_Mutation_p.S858F|GRIA2_uc003ipk.3_Missense_Mutation_p.S811F|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_3'UTR|GRIA2_uc011ciy.1_3'UTR|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	858	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ATTAACCCATCTTCCTCGCAG	0.428													17	39					0	0	0.006122	0	0
ANP32C	23520	broad.mit.edu	37	4	165118365	165118365	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:165118365C>T	uc011cjk.1	-	1	499	c.499G>A	c.(499-501)GAG>AAG	p.E167K	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	167	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		TCACCCTCCTCCTCGTCATCC	0.393													19	25					0	0	0.006122	0	0
ANP32C	23520	broad.mit.edu	37	4	165118757	165118757	+	Missense_Mutation	SNP	G	A	A	rs115041268	by1000genomes	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:165118757G>A	uc011cjk.1	-	1	107	c.107C>T	c.(106-108)GCC>GTC	p.A36V	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	36											0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		ATCTGTGAGGGCTTCGAGTTT	0.463													64	86					0	0	0.003610	0	0
TLL1	7092	broad.mit.edu	37	4	166795119	166795119	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:166795119C>T	uc003irh.1	+	1	710	c.63C>T	c.(61-63)TTC>TTT	p.F21F	TLL1_uc011cjn.1_Silent_p.F21F|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	21					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GGATTGTTTTCTACGGGGAGC	0.552													72	121					0	0	0.003610	0	0
DDX60	55601	broad.mit.edu	37	4	169196631	169196631	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:169196631C>T	uc003irp.2	-	16	2461	c.2169G>A	c.(2167-2169)GTG>GTA	p.V723V		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	723							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TCCTTTTCTTCACTTTTACAT	0.323													17	11					0	0	0.001523	0	0
ADAM29	11086	broad.mit.edu	37	4	175898159	175898159	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:175898159G>A	uc003iuc.2	+	5	2153	c.1483G>A	c.(1483-1485)GAA>AAA	p.E495K	ADAM29_uc003iud.2_Missense_Mutation_p.E495K|ADAM29_uc010irr.2_Missense_Mutation_p.E495K|ADAM29_uc011cki.1_Missense_Mutation_p.E495K	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	495	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CTACTGCTATGAAAAGAGCTG	0.453													45	73					0	0	0.003610	0	0
WDR17	116966	broad.mit.edu	37	4	177067288	177067288	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:177067288C>T	uc003iuj.2	+	13	1900	c.1744C>T	c.(1744-1746)CTT>TTT	p.L582F	WDR17_uc003iuk.2_Missense_Mutation_p.L558F|WDR17_uc003ium.3_Missense_Mutation_p.L558F|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	582	WD 10.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		AGAGGGAATTCTTTGCAGTGG	0.338													34	60					0	0	0.007835	0	0
ODZ3	55714	broad.mit.edu	37	4	183659578	183659578	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:183659578C>T	uc003ivd.1	+	17	3297	c.3260C>T	c.(3259-3261)TCG>TTG	p.S1087L	ODZ3_uc003ive.1_Missense_Mutation_p.S493L	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1087	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GAGTATGAGTCGTGTTTGGAC	0.433													113	154					0	0	0.003610	0	0
STOX2	56977	broad.mit.edu	37	4	184930614	184930614	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:184930614G>A	uc003ivz.1	+	3	2058	c.623G>A	c.(622-624)AGC>AAC	p.S208N	STOX2_uc003iwa.1_5'UTR	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	208					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		GACGTGCACAGCACGCATGCA	0.587													23	37					0	0	0.002299	0	0
ENPP6	133121	broad.mit.edu	37	4	185038182	185038182	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:185038182C>T	uc003iwc.2	-	5	824	c.682G>A	c.(682-684)GGC>AGC	p.G228S		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	228	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TCCTGCAGGCCCCGCTCCTGT	0.488													15	31					0	0	0.004990	0	0
FAT1	2195	broad.mit.edu	37	4	187542210	187542210	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr4:187542210G>A	uc003izf.2	-	10	5718	c.5530C>T	c.(5530-5532)CAC>TAC	p.H1844Y		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1844	Extracellular (Potential).|Cadherin 16.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ACGGTAAAGTGAAAAATACTT	0.398										HNSCC(5;0.00058)			10	20					0	0	0.008291	0	0
LRRC14B	389257	broad.mit.edu	37	5	195035	195035	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:195035G>A	uc003jal.1	+	2	1140	c.1112G>A	c.(1111-1113)GGC>GAC	p.G371D		NM_001080478	NP_001073947	A6NHZ5	LR14B_HUMAN	leucine rich repeat containing 14B	371	LRR 4.									skin(1)	1						GAGGAGTGTGGCATCGTAGAC	0.652													9	7					0	0	0.006214	0	0
DNAH5	1767	broad.mit.edu	37	5	13751282	13751282	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:13751282C>T	uc003jfd.2	-	65	11158	c.11116G>A	c.(11116-11118)GAG>AAG	p.E3706K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3706	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCACTTATCTCAGGGGTGTAG	0.448									Kartagener_syndrome				23	16					0	0	0.005443	0	0
DNAH5	1767	broad.mit.edu	37	5	13793757	13793757	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:13793757G>A	uc003jfd.2	-	49	8133	c.8091C>T	c.(8089-8091)ATC>ATT	p.I2697I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2697	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGATGTCCACGATGCTGGTGA	0.448									Kartagener_syndrome				41	28					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13916470	13916470	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:13916470G>A	uc003jfd.2	-	9	1226	c.1184C>T	c.(1183-1185)TCT>TTT	p.S395F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	395	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TACAAACAGAGATGTGATCTT	0.318									Kartagener_syndrome				21	10					0	0	0.001523	0	0
DNAH5	1767	broad.mit.edu	37	5	13931261	13931261	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:13931261C>T	uc003jfd.2	-	2	192	c.150G>A	c.(148-150)CTG>CTA	p.L50L	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	50	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGGTTTTGTTCAGGTCCAAAC	0.473									Kartagener_syndrome				35	13					0	0	0.005524	0	0
CDH18	1016	broad.mit.edu	37	5	19571825	19571825	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:19571825G>A	uc003jgc.2	-	7	1493	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	CDH18_uc003jgd.2_Silent_p.I372I|CDH18_uc011cnm.1_Silent_p.I372I	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	372	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CCCCAACAATGATCTTCAGCA	0.408													10	17					0	0	0.006214	0	0
CDH12	1010	broad.mit.edu	37	5	21842281	21842281	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:21842281C>T	uc010iuc.2	-	5	1261	c.803G>A	c.(802-804)CGA>CAA	p.R268Q	CDH12_uc011cno.1_Missense_Mutation_p.R228Q|CDH12_uc003jgk.2_Missense_Mutation_p.R268Q	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	268	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTTGGGGAATCGAGGTGGATT	0.403										HNSCC(59;0.17)			79	54					0	0	0.003610	0	0
PRDM9	56979	broad.mit.edu	37	5	23522775	23522775	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:23522775C>T	uc003jgo.2	+	8	845	c.663C>T	c.(661-663)CCC>CCT	p.P221P		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	221					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CCCATGGGCCCCCTACATTTG	0.532										HNSCC(3;0.000094)			17	21					0	0	0.006122	0	0
PRDM9	56979	broad.mit.edu	37	5	23524611	23524611	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:23524611G>A	uc003jgo.2	+	10	1301	c.1119G>A	c.(1117-1119)TGG>TGA	p.W373*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	373					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GCAGCAAGTGGAAGAAAGAGC	0.463										HNSCC(3;0.000094)			25	65					0	0	0.005443	0	0
PRDM9	56979	broad.mit.edu	37	5	23526594	23526594	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:23526594G>C	uc003jgo.2	+	11	1579	c.1397G>C	c.(1396-1398)AGG>ACG	p.R466T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	466					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TTGAATAAAAGGACATGGCAG	0.453										HNSCC(3;0.000094)			3	17					0	0	0.004672	0	0
PRDM9	56979	broad.mit.edu	37	5	23527654	23527654	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:23527654C>T	uc003jgo.2	+	11	2639	c.2457C>T	c.(2455-2457)CTC>CTT	p.L819L		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	819	C2H2-type 12.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGTCACACCTCCTCAGACACC	0.562										HNSCC(3;0.000094)			71	55					0	0	0.003610	0	0
PRDM9	56979	broad.mit.edu	37	5	23527765	23527765	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:23527765G>A	uc003jgo.2	+	11	2750	c.2568G>A	c.(2566-2568)GGG>GGA	p.G856G		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	856					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACACACAGGGGAGAAGCCCT	0.587										HNSCC(3;0.000094)			27	94					0	0	0.006320	0	0
CDH10	1008	broad.mit.edu	37	5	24509751	24509751	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:24509751G>A	uc003jgr.1	-	7	1512	c.1180C>T	c.(1180-1182)CAT>TAT	p.H394Y	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	394	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATATCTTCATGAACTTCAAAC	0.383										HNSCC(23;0.051)			15	20					0	0	0.003163	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33535075	33535075	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:33535075C>T	uc003jia.1	-	23	4632	c.4469G>A	c.(4468-4470)GGC>GAC	p.G1490D	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G1405D	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1490	TSP type-1 8.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CTTCTGAAAGCCACCTCCACA	0.493										HNSCC(64;0.19)			5	22					0	0	0.000602	0	0
DNAJC21	134218	broad.mit.edu	37	5	34944982	34944982	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:34944982C>T	uc003jjc.2	+	8	1221	c.994C>T	c.(994-996)CAC>TAC	p.H332Y	DNAJC21_uc003jjb.2_Missense_Mutation_p.H332Y|DNAJC21_uc010iuu.1_Missense_Mutation_p.H216Y|DNAJC21_uc003jjd.2_5'Flank	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	332	Glu-rich.|C2H2-type 1.				protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			CATGAAGAATCACGAGAAGTC	0.408													67	104					0	0	0.003610	0	0
SPEF2	79925	broad.mit.edu	37	5	35771819	35771819	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:35771819G>A	uc003jjo.2	+	27	4021	c.3910G>A	c.(3910-3912)GAG>AAG	p.E1304K	SPEF2_uc003jjp.1_Missense_Mutation_p.E790K|SPEF2_uc003jjr.2_5'Flank	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1304					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTCAAAAAGGAGCCACCCAA	0.403													11	24					0	0	0.000978	0	0
SPEF2	79925	broad.mit.edu	37	5	35814573	35814573	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:35814573A>T	uc003jjo.2	+	37	5498	c.5387A>T	c.(5386-5388)AAA>ATA	p.K1796I	SPEF2_uc003jjr.2_Missense_Mutation_p.K851I	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1796					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TAGGATATTAAAATAATTCTC	0.303													18	19					0	0	0.007413	0	0
IL7R	3575	broad.mit.edu	37	5	35875648	35875648	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:35875648C>T	uc003jjs.2	+	7	924	c.835C>T	c.(835-837)CAT>TAT	p.H279Y	IL7R_uc011coo.1_Silent_p.I247I|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	279	Box 1 motif.|Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TCTCCCCGATCATAAGAAGAC	0.443													10	29					0	0	0.001855	0	0
IL7R	3575	broad.mit.edu	37	5	35876102	35876102	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:35876102C>T	uc003jjs.2	+	8	983	c.894C>T	c.(892-894)TTC>TTT	p.F298F	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	298	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			ATGTGAGTTTCAATCCTGAAA	0.418													11	26					0	0	0.001855	0	0
UGT3A1	133688	broad.mit.edu	37	5	35968231	35968231	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:35968231A>C	uc003jjv.1	-	3	358	c.201T>G	c.(199-201)ATT>ATG	p.I67M	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.I67M|UGT3A1_uc011cor.1_Missense_Mutation_p.I33M|UGT3A1_uc003jjy.1_Missense_Mutation_p.I13M	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	67	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCTCCTCTTTAATATCTAAGA	0.274													9	14					0	0	0.004482	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049324	36049324	+	Silent	SNP	G	A	A	rs148290056	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:36049324G>A	uc003jjz.1	-	4	603	c.510C>T	c.(508-510)TTC>TTT	p.F170F	UGT3A2_uc011cos.1_Silent_p.F136F|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	170	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCAAAGAGCCGAATGAAGTGG	0.453													27	26					0	0	0.006320	0	0
WDR70	55100	broad.mit.edu	37	5	37725136	37725136	+	Silent	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:37725136T>A	uc003jkv.2	+	16	1756	c.1698T>A	c.(1696-1698)CCT>CCA	p.P566P		NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	566										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AACCTGAACCTCCTGTAGCAG	0.537													22	45					0	0	0.003954	0	0
WDR70	55100	broad.mit.edu	37	5	37725138	37725138	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:37725138C>T	uc003jkv.2	+	16	1758	c.1700C>T	c.(1699-1701)CCT>CTT	p.P567L		NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	567										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCTGAACCTCCTGTAGCAGGC	0.542													22	44					0	0	0.003954	0	0
OSMR	9180	broad.mit.edu	37	5	38925305	38925305	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:38925305G>A	uc003jln.1	+	15	2412	c.2045_splice	c.e15-1	p.D682_splice	OSMR_uc011cpj.1_Splice_Site	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor						cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					AAAAATCACAGATGGTTCAGA	0.328													23	39					0	0	0.002299	0	0
RICTOR	253260	broad.mit.edu	37	5	38975651	38975651	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:38975651G>A	uc003jlp.2	-	10	901	c.877C>T	c.(877-879)CGA>TGA	p.R293*	RICTOR_uc003jlo.2_Nonsense_Mutation_p.R293*|RICTOR_uc010ivf.2_Nonsense_Mutation_p.R8*|RICTOR_uc003jlq.1_Nonsense_Mutation_p.R277*	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	293					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					GCCCATGATCGGAATGTTGCT	0.388													14	28					0	0	0.004990	0	0
C7	730	broad.mit.edu	37	5	40959592	40959592	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:40959592C>T	uc003jmh.2	+	12	1645	c.1531C>T	c.(1531-1533)CCC>TCC	p.P511S	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	511	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CTCTTGGAGCCCCTGTGTCCA	0.502													12	19					0	0	0.000978	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41008722	41008722	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:41008722G>A	uc003jmj.3	-	33	4084	c.3594C>T	c.(3592-3594)ATC>ATT	p.I1198I	HEATR7B2_uc003jmi.3_Silent_p.I753I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1198							binding			ovary(6)|central_nervous_system(2)	8						AGGGGTCTGGGATCTGCTGCT	0.567													21	43					0	0	0.008361	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41038922	41038922	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:41038922G>A	uc003jmj.3	-	21	2620	c.2130C>T	c.(2128-2130)CTC>CTT	p.L710L	HEATR7B2_uc003jmi.3_Silent_p.L265L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	710							binding			ovary(6)|central_nervous_system(2)	8						TGGGAGCATGGAGGGCCACTG	0.473													17	22					0	0	0.006122	0	0
C5orf34	375444	broad.mit.edu	37	5	43506360	43506360	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:43506360T>A	uc003jnz.1	-	5	739	c.422A>T	c.(421-423)CAT>CTT	p.H141L	C5orf34_uc011cpx.1_Missense_Mutation_p.H27L	NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	141										breast(1)	1	Lung NSC(6;2.07e-05)					TGTAAATTCATGCTGAGATCT	0.378													23	42					0	0	0.003954	0	0
NNT	23530	broad.mit.edu	37	5	43609398	43609398	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:43609398G>A	uc003joe.2	+	2	356	c.101G>A	c.(100-102)CGA>CAA	p.R34Q	NNT_uc003jof.2_Missense_Mutation_p.R34Q	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	34					tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GATTTTTTACGAACATTTTAT	0.418													21	21					0	0	0.002780	0	0
HCN1	348980	broad.mit.edu	37	5	45262159	45262159	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:45262159G>A	uc003jok.2	-	8	2562	c.2537C>T	c.(2536-2538)TCG>TTG	p.S846L		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	846	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGCTCCCGACGACATCTGTCG	0.647													29	54					0	0	0.002096	0	0
HCN1	348980	broad.mit.edu	37	5	45262779	45262779	+	Silent	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:45262779G>T	uc003jok.2	-	8	1942	c.1917C>A	c.(1915-1917)ATC>ATA	p.I639I		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	639	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GAGGATAATTGATGGGAGCGA	0.498													33	50					1.69901e-12	2.34532e-12	0.005524	1	0
MAP3K1	4214	broad.mit.edu	37	5	56174881	56174881	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:56174881C>T	uc003jqw.3	+	11	2541	c.2040C>T	c.(2038-2040)CTC>CTT	p.L680L		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	680					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		AGAGACTTCTCCAGCCAGTTG	0.413													26	15					0	0	0.005443	0	0
PDE4D	5144	broad.mit.edu	37	5	58287737	58287737	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:58287737C>A	uc003jsa.2	-	8	1282	c.1110G>T	c.(1108-1110)TTG>TTT	p.L370F	PDE4D_uc003jrx.2_Missense_Mutation_p.L234F|PDE4D_uc003jry.2_Missense_Mutation_p.L68F|PDE4D_uc003jrz.2_Missense_Mutation_p.L306F|PDE4D_uc003jsb.2_Missense_Mutation_p.L309F|PDE4D_uc003jrt.2_Missense_Mutation_p.L68F|PDE4D_uc003jru.2_Missense_Mutation_p.L146F|PDE4D_uc003jrv.2_Missense_Mutation_p.L240F|PDE4D_uc003jrw.2_Missense_Mutation_p.L248F|PDE4D_uc003jrs.2_Missense_Mutation_p.L79F	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	370					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	AGCTGTGCATCAATTTCTTGA	0.388													10	5					9.70103e-10	1.33702e-09	0.008291	1	0
GPR98	84059	broad.mit.edu	37	5	89938704	89938704	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:89938704G>A	uc003kju.2	+	13	2495	c.2399G>A	c.(2398-2400)CGA>CAA	p.R800Q	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	800	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CACATCATCCGATCAAGGGGG	0.398													54	22					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	90074720	90074720	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:90074720C>T	uc003kju.2	+	64	12984	c.12888C>T	c.(12886-12888)GGC>GGT	p.G4296G	GPR98_uc003kjt.2_Silent_p.G2002G|GPR98_uc003kjw.2_5'Flank	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4296	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAGATTTTGGCCATGTGCGAC	0.458													49	24					0	0	0.003610	0	0
GIN1	54826	broad.mit.edu	37	5	102432395	102432395	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:102432395G>A	uc003koa.1	-	7	1226	c.1144C>T	c.(1144-1146)CGT>TGT	p.R382C	GIN1_uc003kob.1_Missense_Mutation_p.R235C|GIN1_uc003koc.1_Intron	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	382					DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		GACTGAAAACGACCATCCTTC	0.378													59	42					0	0	0.003610	0	0
FBXL21	26223	broad.mit.edu	37	5	135272446	135272446	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:135272446C>T	uc010jec.1	+	1	184	c.163C>T	c.(163-165)CAG>TAG	p.Q55*	FBXL21_uc003lbc.2_Intron	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	55	F-box.				rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACAAATTTTTCAGTAACTTCC	0.408													54	33					0	0	0.003610	0	0
CDC25C	995	broad.mit.edu	37	5	137654975	137654975	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:137654975C>T	uc003lcp.1	-	7	819	c.548G>A	c.(547-549)GGA>GAA	p.G183E	CDC25C_uc003lcq.1_Missense_Mutation_p.G110E|CDC25C_uc003lcr.1_Missense_Mutation_p.G183E|CDC25C_uc011cyp.1_Missense_Mutation_p.G200E|CDC25C_uc003lcs.1_Missense_Mutation_p.G261E|CDC25C_uc010jet.1_Missense_Mutation_p.G153E|CDC25C_uc003lct.1_3'UTR|CDC25C_uc003lcu.1_Missense_Mutation_p.G140E	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	183					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CTGGTCTTCTCCTAGGTTTGG	0.373													26	14					0	0	0.004656	0	0
PSD2	84249	broad.mit.edu	37	5	139193016	139193016	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:139193016G>A	uc003leu.1	+	3	699	c.494G>A	c.(493-495)AGC>AAC	p.S165N		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	165					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGGGCTGAGCCTCACGGAT	0.652													21	10					0	0	0.001523	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222098	140222098	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:140222098G>A	uc003lhs.2	+	1	1192	c.1192G>A	c.(1192-1194)GTG>ATG	p.V398M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.V398M	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	398	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCAAGCTGGTGTCCACCTT	0.587													73	40					0	0	0.003610	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558279	140558279	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:140558279C>T	uc011dai.1	+	1	850	c.664C>T	c.(664-666)CCC>TCC	p.P222S	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	222	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGCTCTCCGCCCAGATCTGG	0.522													25	72					0	0	0.003954	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564312	140564312	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:140564312G>A	uc003liv.2	+	1	3333	c.2178G>A	c.(2176-2178)TCG>TCA	p.S726S	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	726	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGCTGCTCGATGCCTGAGG	0.662													49	27					0	0	0.003610	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711920	140711920	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:140711920G>A	uc003lji.1	+	1	1669	c.1669G>A	c.(1669-1671)GAC>AAC	p.D557N	PCDHGA1_uc011dan.1_Missense_Mutation_p.D557N	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	557	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCAGAACGACAACGCGCC	0.642													67	45					0	0	0.003610	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140773266	140773266	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:140773266G>A	uc003lkd.1	+	1	1784	c.886G>A	c.(886-888)GAA>AAA	p.E296K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.E296K	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	296	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGCTTAATGAAAATACTGG	0.388													49	15					0	0	0.003610	0	0
ARAP3	64411	broad.mit.edu	37	5	141059915	141059915	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:141059915A>G	uc003llm.2	-	2	217	c.139T>C	c.(139-141)TTG>CTG	p.L47L	ARAP3_uc003lln.2_5'UTR|ARAP3_uc003llo.1_Silent_p.L47L	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	47	SAM.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CTGATGCCCAACTGCTTCAAC	0.627													21	12					0	0	0.003954	0	0
SPRY4	81848	broad.mit.edu	37	5	141694664	141694664	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:141694664G>A	uc003lml.2	-	2	269	c.10C>T	c.(10-12)CCG>TCG	p.P4S	SPRY4_uc010jgi.1_Missense_Mutation_p.P27S	NM_001127496	NP_001120968	Q9C004	SPY4_HUMAN	sprouty homolog 4 isoform 2	4					multicellular organismal development	cytoplasm|ruffle membrane	protein binding			ovary(1)|lung(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGGGATCGGGGGCTCCATG	0.627									Testicular_Cancer_Familial_Clustering_of				16	10					0	0	0.003163	0	0
FGF1	2246	broad.mit.edu	37	5	141974978	141974978	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:141974978C>T	uc003lmm.2	-	4	425	c.345G>A	c.(343-345)AAG>AAA	p.K115K	FGF1_uc011dbi.1_3'UTR|FGF1_uc003lmn.3_Silent_p.K115K|FGF1_uc003lmp.3_3'UTR|FGF1_uc003lmq.2_Silent_p.K115K|FGF1_uc010jgj.2_Silent_p.K114K|FGF1_uc003lmr.2_Silent_p.K115K|FGF1_uc003lms.3_Silent_p.K115K	NM_001144892	NP_001138364	P05230	FGF1_HUMAN	fibroblast growth factor 1 (acidic) isoform 1	115					angiogenesis|cellular response to heat|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cell migration|positive regulation of cholesterol biosynthetic process|positive regulation of intracellular protein kinase cascade|positive regulation of transcription from RNA polymerase II promoter	cell cortex|cytosol|extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|S100 alpha binding				0		all_neural(839;0.0416)|Ovarian(839;0.0955)|all_hematologic(541;0.1)|Prostate(461;0.157)|Lung NSC(810;0.21)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00032)	Pentosan Polysulfate(DB00686)	CTGCATGCTTCTTGGATATAT	0.443													30	13					0	0	0.001786	0	0
SH3TC2	79628	broad.mit.edu	37	5	148408258	148408258	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:148408258G>A	uc003lpu.2	-	10	1311	c.1159C>T	c.(1159-1161)CCT>TCT	p.P387S	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_5'UTR|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.P380S|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Missense_Mutation_p.P272S	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	387							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCATTTGGAGGATTCTGGATG	0.517													33	19					0	0	0.004878	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148695858	148695858	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:148695858C>T	uc003lqh.2	+	11	1390	c.1259C>T	c.(1258-1260)CCC>CTC	p.P420L	AFAP1L1_uc010jgy.2_Missense_Mutation_p.P420L|AFAP1L1_uc003lqi.1_Missense_Mutation_p.P35L	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	420	PH 2.						protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGAGGTTCCCTGCTGTGGT	0.642													31	21					0	0	0.003755	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148699251	148699251	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:148699251C>T	uc003lqh.2	+	13	1717	c.1586C>T	c.(1585-1587)ACC>ATC	p.T529I	AFAP1L1_uc010jgy.2_Missense_Mutation_p.T529I|AFAP1L1_uc003lqi.1_Missense_Mutation_p.T144I	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	529							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGTGGAGACCTTAACCAGC	0.597													13	6					0	0	0.001368	0	0
GABRA6	2559	broad.mit.edu	37	5	161128527	161128527	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:161128527G>A	uc003lyu.2	+	9	1448	c.1110G>A	c.(1108-1110)CTG>CTA	p.L370L	GABRA6_uc003lyv.2_Silent_p.L141L	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	370	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AATATCATCTGAAGAAAAGGA	0.383										TCGA Ovarian(5;0.080)			44	17					0	0	0.003610	0	0
SLIT3	6586	broad.mit.edu	37	5	168114030	168114030	+	Missense_Mutation	SNP	C	T	T	rs148887706		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:168114030C>T	uc003mab.2	-	30	3688	c.3268G>A	c.(3268-3270)GTG>ATG	p.V1090M	SLIT3_uc010jjg.2_Missense_Mutation_p.V1097M	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1090	EGF-like 5.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATTGTGTCCACGCACTGGGCC	0.622													25	11					0	0	0.005443	0	0
CDHR2	54825	broad.mit.edu	37	5	176004637	176004637	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:176004637G>A	uc003mem.1	+	14	1417	c.1351_splice	c.e14-1	p.V451_splice	CDHR2_uc003men.1_Splice_Site_p.V451_splice	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor						homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CCTGCCCCCAGGTTGTGGCCA	0.652													16	13					0	0	0.004990	0	0
CDHR2	54825	broad.mit.edu	37	5	176011632	176011632	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:176011632G>A	uc003mem.1	+	19	2416	c.2350G>A	c.(2350-2352)GAC>AAC	p.D784N	CDHR2_uc003men.1_Missense_Mutation_p.D784N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	784	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						TGAGAACCCAGACCCCCAGGG	0.617													25	11					0	0	0.004656	0	0
FGFR4	2264	broad.mit.edu	37	5	176522568	176522568	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:176522568G>A	uc003mfl.2	+	13	1832	c.1665G>A	c.(1663-1665)AAG>AAA	p.K555K	FGFR4_uc003mfm.2_Silent_p.K555K|FGFR4_uc011dfu.1_Silent_p.K487K|FGFR4_uc003mfo.2_Silent_p.K515K	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	555	Protein kinase.|Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	GCGCCGCCAAGGGAAACCTGC	0.706										TSP Lung(9;0.080)			5	7					0	0	0.000602	0	0
ZNF354C	30832	broad.mit.edu	37	5	178505774	178505774	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:178505774C>T	uc003mju.2	+	5	456	c.341C>T	c.(340-342)TCC>TTC	p.S114F		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		AAGAAAGAATCCATTAAGGAT	0.373													27	10					0	0	0.006320	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179302141	179302141	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr5:179302141G>A	uc003mlh.2	-	12	1984	c.1947C>T	c.(1945-1947)TTC>TTT	p.F649F	TBC1D9B_uc003mli.2_Silent_p.F649F|TBC1D9B_uc003mlj.2_Silent_p.F649F|TBC1D9B_uc011dgv.1_5'Flank	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	649	Rab-GAP TBC.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTGCGGCAGGAAGTCTCTCG	0.627													27	14					0	0	0.008361	0	0
PRPF4B	8899	broad.mit.edu	37	6	4057355	4057355	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:4057355C>T	uc003mvv.2	+	13	2758	c.2667C>T	c.(2665-2667)TTC>TTT	p.F889F	PRPF4B_uc003mvw.2_RNA|C6orf146_uc010jnq.1_Intron|PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	889	Protein kinase.					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				AAATTTTATTCCCTGGCAAAA	0.353													24	131					0	0	0.003330	0	0
DSP	1832	broad.mit.edu	37	6	7579988	7579988	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:7579988G>A	uc003mxp.1	+	23	3844	c.3565G>A	c.(3565-3567)GAA>AAA	p.E1189K	DSP_uc003mxq.1_Missense_Mutation_p.E1189K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1189	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGAGAATATGAAAATGAGCT	0.408													5	20					0	0	0.001168	0	0
SNRNP48	154007	broad.mit.edu	37	6	7605713	7605713	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:7605713C>T	uc003mxr.2	+	7	859	c.800C>T	c.(799-801)GCC>GTC	p.A267V	SNRNP48_uc003mxs.2_RNA|SNRNP48_uc003mxt.1_Missense_Mutation_p.A19V	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	267					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						GAGGATGATGCCGAAAAGTAC	0.368													16	41					0	0	0.004990	0	0
C6orf105	84830	broad.mit.edu	37	6	11778902	11778902	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:11778902C>T	uc003nab.2	-	1	379	c.91G>A	c.(91-93)GAG>AAG	p.E31K	C6orf105_uc011dip.1_Missense_Mutation_p.E31K	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	31						integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			GGTTTCACCTCGTCTTTTCCT	0.433													51	127					0	0	0.003610	0	0
JARID2	3720	broad.mit.edu	37	6	15497234	15497234	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:15497234C>T	uc003nbj.2	+	7	2022	c.1778C>T	c.(1777-1779)CCG>CTG	p.P593L	JARID2_uc011diu.1_Missense_Mutation_p.P457L|JARID2_uc011div.1_Missense_Mutation_p.P421L|JARID2_uc011diw.1_Missense_Mutation_p.P555L	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	593	JmjN.				central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				ATCCCCCCTCCGGACTGGCGG	0.637													12	20					0	0	0.004007	0	0
DCDC2	51473	broad.mit.edu	37	6	24278393	24278393	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:24278393G>A	uc003ndx.2	-	7	1108	c.806C>T	c.(805-807)TCA>TTA	p.S269L	DCDC2_uc003ndy.2_Missense_Mutation_p.S269L	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	269					cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				CTGAGGAGATGAGTTGTCACT	0.358													27	71					0	0	0.007291	0	0
KIAA0319	9856	broad.mit.edu	37	6	24582553	24582553	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:24582553C>T	uc011djo.1	-	6	1352	c.1115G>A	c.(1114-1116)TGG>TAG	p.W372*	KIAA0319_uc011djp.1_Nonsense_Mutation_p.W327*|KIAA0319_uc003neh.1_Nonsense_Mutation_p.W372*|KIAA0319_uc011djq.1_Nonsense_Mutation_p.W363*|KIAA0319_uc011djr.1_Nonsense_Mutation_p.W372*|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	372	PKD 1.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TATTAAATTCCATTCATAGTT	0.393													67	81					0	0	0.003610	0	0
SCGN	10590	broad.mit.edu	37	6	25670232	25670232	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:25670232C>T	uc003nfb.2	+	6	602	c.399C>T	c.(397-399)TTC>TTT	p.F133F	SCGN_uc010jpz.2_Missense_Mutation_p.S43F	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	133	EF-hand 3.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						CACAGAACTTCCTCCGAGACC	0.373													78	218					0	0	0.003610	0	0
SLC17A4	10050	broad.mit.edu	37	6	25762227	25762227	+	Missense_Mutation	SNP	G	A	A	rs143424660	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:25762227G>A	uc003nfe.2	+	2	156	c.37G>A	c.(37-39)GAC>AAC	p.D13N	SLC17A4_uc011djx.1_Missense_Mutation_p.D13N|SLC17A4_uc003nff.1_5'UTR|SLC17A4_uc003nfg.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	13					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						TACAGTGGGGGACATTTCCAG	0.398													19	52					0	0	0.001882	0	0
SLC17A4	10050	broad.mit.edu	37	6	25773765	25773765	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:25773765C>T	uc003nfe.2	+	8	969	c.850C>T	c.(850-852)CCC>TCC	p.P284S	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Missense_Mutation_p.P45S|SLC17A4_uc003nfg.2_Missense_Mutation_p.P221S|SLC17A4_uc010jqa.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	284					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CTGGTCTCTTCCCATTAGGGC	0.453													18	51					0	0	0.008871	0	0
HIST1H4C	8364	broad.mit.edu	37	6	26104319	26104319	+	Silent	SNP	C	T	T	rs146396988		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:26104319C>T	uc003ngi.2	+	1	144	c.144C>T	c.(142-144)TCC>TCT	p.S48S		NM_003542	NP_003533	P62805	H4_HUMAN	histone cluster 1, H4c	48					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0						AGCGCATTTCCGGTCTTATCT	0.537													18	54					0	0	0.001523	0	0
PRSS16	10279	broad.mit.edu	37	6	27215814	27215814	+	Missense_Mutation	SNP	G	A	A	rs150849072	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:27215814G>A	uc003nja.2	+	2	236	c.224G>A	c.(223-225)CGA>CAA	p.R75Q	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Missense_Mutation_p.R75Q|PRSS16_uc010jqq.1_5'Flank|PRSS16_uc010jqr.1_5'Flank|PRSS16_uc003njc.1_5'Flank	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	75					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						TCCGACAGACGATCCTTCCTA	0.617													20	13					0	0	0.001882	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28327466	28327466	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28327466C>T	uc003nle.3	+	2	319	c.103C>T	c.(103-105)CCC>TCC	p.P35S	ZKSCAN3_uc010jrc.2_Missense_Mutation_p.P35S|ZKSCAN3_uc003nlf.3_Intron	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	35					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AGCCGGTTTTCCCAGTAGCCC	0.607													51	145					0	0	0.003610	0	0
GPX6	257202	broad.mit.edu	37	6	28474202	28474202	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28474202C>T	uc011dlj.1	-	4	296	c.246G>A	c.(244-246)CTG>CTA	p.L82L	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	82					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GTAGTGCATTCAGTTCTGTAA	0.438													17	44					0	0	0.007413	0	0
SCAND3	114821	broad.mit.edu	37	6	28539785	28539785	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28539785C>T	uc003nlo.2	-	4	4499	c.3881G>A	c.(3880-3882)AGT>AAT	p.S1294N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1294					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						tatatttaaactgtttctatg	0													17	47					0	0	0.004990	0	0
SCAND3	114821	broad.mit.edu	37	6	28543685	28543685	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28543685T>A	uc003nlo.2	-	3	1415	c.797A>T	c.(796-798)GAA>GTA	p.E266V		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	266	Potential.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTCAACTGATTCCTTTTTCGC	0.353													38	126					0	0	0.004878	0	0
SCAND3	114821	broad.mit.edu	37	6	28547076	28547076	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28547076G>A	uc003nlo.2	-	2	1159	c.541C>T	c.(541-543)CCA>TCA	p.P181S		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	181					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTGGCTCTGGAGATTCACAT	0.408													50	152					0	0	0.003610	0	0
ZNF311	282890	broad.mit.edu	37	6	28963143	28963143	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28963143G>A	uc003nlu.2	-	7	2149	c.1636C>T	c.(1636-1638)CGA>TGA	p.R546*	ZNF311_uc011dlk.1_Nonsense_Mutation_p.R454*|ZNF311_uc003nlv.2_Nonsense_Mutation_p.R454*	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	546	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TGAATTCTTCGATGATTGGTC	0.453													25	41					0	0	0.001786	0	0
ZNF311	282890	broad.mit.edu	37	6	28966604	28966604	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:28966604G>A	uc003nlu.2	-	6	835	c.322C>T	c.(322-324)CCT>TCT	p.P108S	ZNF311_uc011dlk.1_Missense_Mutation_p.P16S|ZNF311_uc003nlv.2_Missense_Mutation_p.P16S	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						GGAGGTTTAGGAAATGGAAAT	0.438													22	52					0	0	0.002299	0	0
OR2W1	26692	broad.mit.edu	37	6	29012445	29012445	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:29012445C>T	uc003nlw.2	-	1	508	c.508G>A	c.(508-510)GGA>AGA	p.G170R		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ATGTTGTTTCCACATGTGGGC	0.398													20	58					0	0	0.001523	0	0
OR2J3	442186	broad.mit.edu	37	6	29080401	29080401	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:29080401G>A	uc011dll.1	+	1	734	c.734G>A	c.(733-735)GGA>GAA	p.G245E		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAACATGTGGAGCTCATCTT	0.463													33	70					0	0	0.004289	0	0
OR5V1	81696	broad.mit.edu	37	6	29323269	29323269	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:29323269C>T	uc011dlo.1	-	1	786	c.704G>A	c.(703-705)CGA>CAA	p.R235Q		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						GAAGGCTTTTCGTCTTCCCTC	0.458													20	45					0	0	0.007413	0	0
ZFP57	346171	broad.mit.edu	37	6	29640996	29640996	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:29640996G>A	uc011dlw.1	-	4	1043	c.892C>T	c.(892-894)CCA>TCA	p.P298S	ZFP57_uc003nnl.3_Missense_Mutation_p.P278S	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	214					DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						TGGGTGCCTGGAATCCTCAAA	0.562													45	141					0	0	0.003610	0	0
TRIM15	89870	broad.mit.edu	37	6	30136161	30136161	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:30136161C>T	uc010jrx.2	+	3	1041	c.562C>T	c.(562-564)CTG>TTG	p.L188L		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	188	Potential.				mesodermal cell fate determination	intracellular	zinc ion binding				0						ATGTCTCCTGCTGGCCAGGCT	0.532													19	45					0	0	0.002780	0	0
TUBB	203068	broad.mit.edu	37	6	30691565	30691565	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:30691565C>T	uc003nrl.2	+	4	853	c.726C>T	c.(724-726)TTC>TTT	p.F242F	TUBB_uc003nrk.1_Silent_p.F242F|TUBB_uc011dmq.1_Silent_p.F170F	NM_178014	NP_821133	P07437	TBB5_HUMAN	tubulin, beta	242					cellular component movement|G2/M transition of mitotic cell cycle|microtubule-based movement|natural killer cell mediated cytotoxicity|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|MHC class I protein binding			ovary(1)	1					Colchicine(DB01394)|Vinblastine(DB00570)|Vincristine(DB00541)|Vinorelbine(DB00361)	GCCTCCGTTTCCCTGGCCAGC	0.567													37	81					0	0	0.005524	0	0
CCHCR1	54535	broad.mit.edu	37	6	31122388	31122388	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31122388C>T	uc003nsr.3	-	4	542	c.419G>A	c.(418-420)CGA>CAA	p.R140Q	CCHCR1_uc011dne.1_Missense_Mutation_p.R140Q|CCHCR1_uc003nsq.3_Missense_Mutation_p.R193Q|CCHCR1_uc003nsp.3_Missense_Mutation_p.R229Q|CCHCR1_uc010jsk.1_Missense_Mutation_p.R140Q	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	140	Potential.				cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						AGCCTCAGCTCGGCCGGCCTT	0.662													149	144					0	0	0.003610	0	0
HLA-C	3107	broad.mit.edu	37	6	31237825	31237825	+	Silent	SNP	G	A	A	rs45486697		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31237825G>A	uc003nsy.2	-	5	940	c.933C>T	c.(931-933)ATC>ATT	p.I311I	HLA-C_uc011dnj.1_Silent_p.I283I|HLA-C_uc003nsx.2_Silent_p.I190I|HLA-C_uc003nsz.2_Silent_p.I311I|HLA-C_uc010jsl.2_Silent_p.I311I|HLA-C_uc003nta.2_Silent_p.I311I|HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Silent_p.I190I	NM_002117	NP_002108	Q9TNN7	1C05_HUMAN	major histocompatibility complex, class I, C	311	Helical; (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex					0						GGCCAGCAACGATGCCCATGA	0.607													23	29					0	0	0.002780	0	0
HLA-C	3107	broad.mit.edu	37	6	31237827	31237827	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31237827T>A	uc003nsy.2	-	5	938	c.931A>T	c.(931-933)ATC>TTC	p.I311F	HLA-C_uc011dnj.1_Missense_Mutation_p.I283F|HLA-C_uc003nsx.2_Missense_Mutation_p.I190F|HLA-C_uc003nsz.2_Missense_Mutation_p.I311F|HLA-C_uc010jsl.2_Missense_Mutation_p.I311F|HLA-C_uc003nta.2_Missense_Mutation_p.I311F|HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Missense_Mutation_p.I190F	NM_002117	NP_002108	Q9TNN7	1C05_HUMAN	major histocompatibility complex, class I, C	311	Helical; (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex					0						CCAGCAACGATGCCCATGATG	0.612													25	27					0	0	0.003954	0	0
LTA	4049	broad.mit.edu	37	6	31541203	31541203	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31541203G>A	uc011dnu.1	+	4	564	c.351G>A	c.(349-351)GGG>GGA	p.G117G	LTA_uc003nue.1_Silent_p.G117G|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Intron|LTA_uc003nug.2_Intron|LTA_uc010jsr.2_Intron|TNF_uc003nui.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	117					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	TCTTCTCTGGGAAAGCCTACT	0.577													26	65					0	0	0.006320	0	0
BAT5	7920	broad.mit.edu	37	6	31655432	31655432	+	Silent	SNP	G	A	A	rs141653752		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31655432G>A	uc003nvy.1	-	18	1563	c.1533C>T	c.(1531-1533)TTC>TTT	p.F511F	BAT5_uc003nvx.1_Silent_p.F292F|BAT5_uc011dny.1_Silent_p.F478F|BAT5_uc003nvz.1_Silent_p.F292F|BAT5_uc011dnz.1_Silent_p.F292F	NM_021160	NP_066983	O95870	ABHGA_HUMAN	HLA-B associated transcript 5	511						integral to membrane	hydrolase activity|protein binding				0						CGCTCCAGGGGAAGTCGGGCC	0.597													73	216					0	0	0.003610	0	0
MSH5	4439	broad.mit.edu	37	6	31711783	31711783	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31711783C>T	uc003nwv.1	+	6	597	c.518C>T	c.(517-519)CCC>CTC	p.P173L	MSH5_uc003nwt.1_Missense_Mutation_p.P173L|MSH5_uc003nwu.1_Missense_Mutation_p.P173L|MSH5_uc003nww.1_Missense_Mutation_p.P173L|MSH5_uc003nwx.1_Missense_Mutation_p.P173L|MSH5_uc011dof.1_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	173					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						TCCATTATTCCCTTTGACTGC	0.532								Direct_reversal_of_damage|MMR					154	399					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779021	31779021	+	Silent	SNP	G	A	A	rs140616297	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31779021G>A	uc003nxh.2	-	2	912	c.729C>T	c.(727-729)TTC>TTT	p.F243F	HSPA1L_uc010jte.2_Silent_p.F243F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	243					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						ACTCCTCCACGAAGTGGCTCA	0.557													153	414					0	0	0.003610	0	0
CFB	629	broad.mit.edu	37	6	31895820	31895820	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31895820C>G	uc011dor.1	+	2	399	c.135C>G	c.(133-135)AGC>AGG	p.S45R	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.S45R|C2_uc003nyf.2_Missense_Mutation_p.S45R|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.A7G|C2_uc003nyg.2_Intron	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CTCCTGGGAGCCTTCTCACCT	0.652													87	269					0	0	0.003610	0	0
C2	717	broad.mit.edu	37	6	31896685	31896685	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31896685G>A	uc003nyf.2	+	3	697	c.433G>A	c.(433-435)GAT>AAT	p.D145N	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.D145N|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.D116N|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	145	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		AGCTGTGTGTGATAATGGGGG	0.597													74	212					0	0	0.003610	0	0
CFB	629	broad.mit.edu	37	6	31901724	31901724	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31901724C>T	uc011dor.1	+	4	775	c.511C>T	c.(511-513)CCC>TCC	p.P171S	C2_uc003nyc.2_Silent_p.I64I|C2_uc011doo.1_Intron|C2_uc011dop.1_Missense_Mutation_p.P110S|C2_uc003nye.3_Missense_Mutation_p.P233S|C2_uc003nyf.2_Missense_Mutation_p.P233S|C2_uc010jtk.2_Missense_Mutation_p.P101S|C2_uc011doq.1_Missense_Mutation_p.P204S|C2_uc003nyg.2_Missense_Mutation_p.P101S	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GGCCACCAATCCCACCCAGAA	0.597													64	177					0	0	0.003610	0	0
CFB	629	broad.mit.edu	37	6	31914153	31914153	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31914153T>G	uc003nyj.3	+	2	346	c.68T>G	c.(67-69)GTG>GGG	p.V23G	CFB_uc011dor.1_Missense_Mutation_p.V525G|CFB_uc011dos.1_Missense_Mutation_p.V23G|CFB_uc003nyi.2_Missense_Mutation_p.V23G	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	23					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCTTCAGGTGTGACCACCACT	0.592													63	269					0	0	0.003610	0	0
STK19	8859	broad.mit.edu	37	6	31940082	31940082	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31940082G>A	uc003nyv.2	+	2	352	c.224G>A	c.(223-225)GGG>GAG	p.G75E	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.G32E|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.G75E|STK19_uc011dox.1_Missense_Mutation_p.G32E|STK19_uc003nyw.2_Missense_Mutation_p.G75E|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	75						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						GGTCTAGGAGGGACGCCCGGG	0.602													33	86					0	0	0.004878	0	0
C4A	720	broad.mit.edu	37	6	31962466	31962466	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31962466C>T	uc011doy.1	+	21	2835	c.2784C>T	c.(2782-2784)TCC>TCT	p.S928S	C4A_uc011doz.1_Silent_p.S928S	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	928					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						ATGCGGTGTCCAAGGTTCTGC	0.617													7	44					0	0	0.000978	0	0
TNXB	7148	broad.mit.edu	37	6	31979966	31979966	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:31979966C>T	uc011dpc.1	-	1	1086	c.177G>A	c.(175-177)GGG>GGA	p.G59G	STK19_uc003nza.2_5'Flank|STK19_uc003nzb.2_5'Flank	NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	3675	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCAGGCGCTTCCCTTCATGGA	0.642													34	49					0	0	0.003271	0	0
TNXB	7148	broad.mit.edu	37	6	32024387	32024387	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:32024387G>A	uc003nzl.2	-	23	8321	c.8119C>T	c.(8119-8121)CCC>TCC	p.P2707S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2767	Fibronectin type-III 19.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACAGAGATGGGGCCCACGCGC	0.632													85	288					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32038123	32038123	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:32038123G>A	uc003nzl.2	-	14	5261	c.5059C>T	c.(5059-5061)CCA>TCA	p.P1687S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1769	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGTGAGTCTGGGGTGGGGTCT	0.612													81	187					0	0	0.003610	0	0
FKBPL	63943	broad.mit.edu	37	6	32096561	32096562	+	Missense_Mutation	DNP	CC	AA	AA	rs147280001		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:32096561_32096562CC>AA	uc003nzr.2	-	2	1266_1267	c.996_997GG>TT	c.(994-999)CAGGGG>CATTGG	p.332_333QG>HW	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	332_333					response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						TGGTTCTTCCCCTGAATGACCA	0.505													11	763					0	0	0.004672	0	0
PBX2	5089	broad.mit.edu	37	6	32155124	32155124	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:32155124C>A	uc003oav.1	-	6	1190	c.919G>T	c.(919-921)GGA>TGA	p.G307*	PBX2_uc003oaw.2_Nonsense_Mutation_p.G307*	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	307							transcription factor binding			ovary(1)	1						TGGAACTTTCCGATGTTTTTC	0.547													7	461					0.00307968	0.00421565	0.003080	1	0
GPSM3	63940	broad.mit.edu	37	6	32159543	32159543	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:32159543G>A	uc003oay.3	-	3	681	c.288C>T	c.(286-288)GCC>GCT	p.A96A	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Silent_p.A73A|GPSM3_uc003oaz.2_Silent_p.A96A	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	96					signal transduction	cytoplasm	GTPase activator activity|protein binding				0						GACGGAGTGGGGCAGGGGCTA	0.617													126	430					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32184932	32184932	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:32184932G>T	uc003obb.2	-	10	1875	c.1736C>A	c.(1735-1737)CCA>CAA	p.P579Q	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.P579Q	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	579	Extracellular (Potential).|EGF-like 14; calcium-binding (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CAGTTTACCTGGGAGACACTT	0.612													8	306					0.00307968	0.00421565	0.003080	1	0
COL11A2	1302	broad.mit.edu	37	6	33146700	33146700	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:33146700C>T	uc003ocx.1	-	17	1890	c.1662G>A	c.(1660-1662)GTG>GTA	p.V554V	COL11A2_uc010jul.1_5'Flank|COL11A2_uc003ocy.1_Silent_p.V468V|COL11A2_uc003ocz.1_Silent_p.V447V	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	554	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CTGTTACCTTCACTCCAGGAT	0.617													8	39					0	0	0.004482	0	0
DAXX	1616	broad.mit.edu	37	6	33287363	33287363	+	Silent	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:33287363G>T	uc003oec.2	-	6	1938	c.1734C>A	c.(1732-1734)ACC>ACA	p.T578T	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Silent_p.T503T|DAXX_uc011dre.1_Silent_p.T590T|DAXX_uc003oed.2_Silent_p.T578T	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	578	Interaction with MAP3K5.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						CAGAGGAAGGGGTATCCAGGG	0.517			Mis|F|N		Pancreatic neuroendocrine tumors								38	97					3.21399e-22	4.45067e-22	0.004878	1	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333687	33333687	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:33333687G>A	uc003shx.2	-	1	453	c.319C>T	c.(319-321)CCT>TCT	p.P107S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						TGATTGGCAGGGATCCCGTTC	0.582													31	59					0	0	0.006999	0	0
GRM4	2914	broad.mit.edu	37	6	34004153	34004153	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:34004153G>A	uc003oir.3	-	8	1904	c.1734C>T	c.(1732-1734)ATC>ATT	p.I578I	GRM4_uc011dsn.1_Silent_p.I531I|GRM4_uc010jvh.2_Silent_p.I578I|GRM4_uc010jvi.2_Silent_p.I270I|GRM4_uc003oio.2_Silent_p.I270I|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Silent_p.I438I|GRM4_uc003oiq.2_Silent_p.I445I|GRM4_uc011dsm.1_Silent_p.I409I	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	578	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CAAGCTTGATGATGGGGATGG	0.637													18	47					0	0	0.007413	0	0
SPDEF	25803	broad.mit.edu	37	6	34511830	34511830	+	Missense_Mutation	SNP	C	T	T	rs146713427	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:34511830C>T	uc003ojq.1	-	2	818	c.403G>A	c.(403-405)GAG>AAG	p.E135K	SPDEF_uc011dsq.1_Missense_Mutation_p.E135K	NM_012391	NP_036523	O95238	SPDEF_HUMAN	SAM pointed domain containing ets transcription	135	PNT.				negative regulation of survival gene product expression|negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(3)|ovary(1)|central_nervous_system(1)	5						CAGGCCGTCTCGATGTCCTTG	0.642													18	30					0	0	0.001523	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34839359	34839359	+	Splice_Site	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:34839359A>T	uc003oju.3	+	19	4216	c.3982_splice	c.e19-2	p.D1328_splice	UHRF1BP1_uc010jvm.1_Splice_Site|UHRF1BP1_uc010jvn.2_Splice_Site|UHRF1BP1_uc010jvo.2_Splice_Site	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1											ovary(3)	3						TCTTTCCTGCAGGATGATATC	0.507													19	45					0	0	0.001523	0	0
ETV7	51513	broad.mit.edu	37	6	36336837	36336837	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:36336837G>A	uc003omb.2	-	6	825	c.676C>T	c.(676-678)CTG>TTG	p.L226L	ETV7_uc003olz.1_Silent_p.L226L|ETV7_uc003oma.1_Silent_p.L171L|ETV7_uc010jwg.2_RNA|ETV7_uc003omc.2_Silent_p.L171L|ETV7_uc010jwj.2_Silent_p.L167L|ETV7_uc010jwh.2_Silent_p.L145L|ETV7_uc010jwi.2_Silent_p.L149L|ETV7_uc011dtl.1_Silent_p.L75L	NM_016135	NP_057219	Q9Y603	ETV7_HUMAN	ets variant 7	226	ETS.				organ morphogenesis|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TAATCCCACAGCAGGCGGCAG	0.537													17	51					0	0	0.006122	0	0
PI16	221476	broad.mit.edu	37	6	36927080	36927080	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:36927080G>A	uc003ona.2	+	2	659	c.331G>A	c.(331-333)GAG>AAG	p.E111K	PI16_uc003omz.1_Missense_Mutation_p.E111K|PI16_uc003onb.2_Missense_Mutation_p.E111K|PI16_uc011dts.1_5'Flank	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	111	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						CCACGAGCGTGAGCACTACAA	0.706													5	9					0	0	0.001984	0	0
RNF8	9025	broad.mit.edu	37	6	37349114	37349114	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:37349114C>T	uc003onq.3	+	7	1618	c.1425C>T	c.(1423-1425)CTC>CTT	p.L475L	RNF8_uc003onr.3_Intron|RNF8_uc011dtx.1_Silent_p.L407L	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1	475					cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						GAATTGTTCTCATTAGGGAAC	0.343													18	54					0	0	0.008871	0	0
DNAH8	1769	broad.mit.edu	37	6	38743720	38743720	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:38743720G>C	uc003ooe.1	+	11	1904	c.1304G>C	c.(1303-1305)GGT>GCT	p.G435A		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAATCAATGGTTTAGAGGTA	0.308													28	188					0	0	0.006320	0	0
DNAH8	1769	broad.mit.edu	37	6	38773361	38773361	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:38773361G>A	uc003ooe.1	+	21	3088	c.2488G>A	c.(2488-2490)GAA>AAA	p.E830K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAAAGAAGATGAATTTAAAAA	0.343													14	32					0	0	0.001855	0	0
DNAH8	1769	broad.mit.edu	37	6	38980372	38980372	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:38980372G>A	uc003ooe.1	+	89	13622	c.13022G>A	c.(13021-13023)AGG>AAG	p.R4341K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTGAAGGGAGGCCTAATGTG	0.423													61	172					0	0	0.003610	0	0
GLP1R	2740	broad.mit.edu	37	6	39024227	39024227	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:39024227C>T	uc003ooj.3	+	2	193	c.133C>T	c.(133-135)CAG>TAG	p.Q45*	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	45	Extracellular (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	ATACCGACGCCAGTGCCAGCG	0.622													12	25					0	0	0.003163	0	0
LRFN2	57497	broad.mit.edu	37	6	40400092	40400092	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:40400092C>T	uc003oph.1	-	2	1226	c.761G>A	c.(760-762)CGG>CAG	p.R254Q		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	254	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CTCGAGCCTCCGCAGCCAGAG	0.592													11	47					0	0	0.002450	0	0
TAF8	129685	broad.mit.edu	37	6	42044897	42044897	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:42044897G>A	uc003ors.2	+	8	869	c.840G>A	c.(838-840)TCG>TCA	p.S280S	TAF8_uc003ort.2_Missense_Mutation_p.R321Q|TAF8_uc003oru.1_Missense_Mutation_p.R321Q|TAF8_uc003orv.1_Silent_p.S280S|TAF8_uc011dun.1_Silent_p.S204S	NM_138572	NP_612639	Q7Z7C8	TAF8_HUMAN	TBP-associated factor 8	280					cell differentiation|maintenance of protein location in nucleus|positive regulation of transcription, DNA-dependent|regulation of fat cell differentiation|transcription, DNA-dependent	perinuclear region of cytoplasm|transcription factor TFIID complex	DNA binding|protein binding			ovary(1)	1	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00179)			CCTCCTTGTCGGGTAGCCGGA	0.532													44	43					0	0	0.003610	0	0
PTCRA	171558	broad.mit.edu	37	6	42890985	42890985	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:42890985C>T	uc003osx.2	+	2	360	c.279C>T	c.(277-279)TCC>TCT	p.S93S	PTCRA_uc011duz.1_Missense_Mutation_p.P104L|PTCRA_uc010jxx.1_Missense_Mutation_p.P54L|PTCRA_uc010jxy.2_Silent_p.S68S|PTCRA_uc010jxz.2_Intron	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	93	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CCCATCTCTCCCTGCCTTCTG	0.612													38	104					0	0	0.005524	0	0
GNMT	27232	broad.mit.edu	37	6	42930850	42930850	+	Silent	SNP	G	A	A	rs149792195		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:42930850G>A	uc003otd.2	+	4	498	c.492G>A	c.(490-492)GCG>GCA	p.A164A	uc003ote.1_5'Flank	NM_018960	NP_061833	Q14749	GNMT_HUMAN	glycine N-methyltransferase	164					protein homotetramerization|protein modification process|S-adenosylmethionine metabolic process		folic acid binding|glycine binding|glycine N-methyltransferase activity				0	Colorectal(47;0.196)		all cancers(41;0.00196)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0461)		Glycine(DB00145)|S-Adenosylmethionine(DB00118)	AAAACATTGCGAGCATGGTGC	0.592													22	64					0	0	0.003954	0	0
CUL7	9820	broad.mit.edu	37	6	43013404	43013404	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:43013404G>A	uc003otq.2	-	14	3086	c.2783C>T	c.(2782-2784)TCT>TTT	p.S928F	CUL7_uc010jyg.2_Missense_Mutation_p.S207F|CUL7_uc011dvb.1_Missense_Mutation_p.S1012F|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	928	DOC.				interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CCGGCTGGCAGAGGGCATCAC	0.612													28	25					0	0	0.008361	0	0
SLC29A1	2030	broad.mit.edu	37	6	44197193	44197193	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:44197193C>T	uc003owu.1	+	3	425	c.96C>T	c.(94-96)TTC>TTT	p.F32F	SLC29A1_uc011dvp.1_Silent_p.F51F|SLC29A1_uc003owv.1_Silent_p.F32F|SLC29A1_uc003oww.1_Silent_p.F111F|SLC29A1_uc011dvq.1_Silent_p.F74F|SLC29A1_uc003owx.1_Silent_p.F32F|SLC29A1_uc003owy.1_Silent_p.F32F|SLC29A1_uc003owz.1_Silent_p.F32F	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	32	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	GGAATTTTTTCATGACGGCCA	0.527													38	131					0	0	0.008740	0	0
ENPP4	22875	broad.mit.edu	37	6	46111256	46111256	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:46111256C>T	uc003oxy.2	+	4	1500	c.1241C>T	c.(1240-1242)TCA>TTA	p.S414L		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	414	Helical; (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						GTTATCGGTTCACTCTTGGTG	0.418													20	68					0	0	0.001882	0	0
CYP39A1	51302	broad.mit.edu	37	6	46563780	46563780	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:46563780G>A	uc003oyf.1	-	8	1213	c.1009C>T	c.(1009-1011)CGT>TGT	p.R337C	CYP39A1_uc011dwa.1_Missense_Mutation_p.R317C|CYP39A1_uc010jzd.1_Missense_Mutation_p.R165C	NM_016593	NP_057677	Q9NYL5	CP39A_HUMAN	cytochrome P450, family 39, subfamily A,	337					bile acid biosynthetic process|bile acid catabolic process|digestion|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	24-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(1)	1						GCTTTTAAACGAATGGTTTCC	0.338													53	51					0	0	0.003610	0	0
GPR116	221395	broad.mit.edu	37	6	46827216	46827216	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:46827216C>G	uc003oyo.3	-	17	2713	c.2424G>C	c.(2422-2424)TTG>TTC	p.L808F	GPR116_uc011dwj.1_Missense_Mutation_p.L363F|GPR116_uc011dwk.1_Missense_Mutation_p.L237F|GPR116_uc003oyp.3_Missense_Mutation_p.L666F|GPR116_uc003oyq.3_Missense_Mutation_p.L808F|GPR116_uc010jzi.1_Missense_Mutation_p.L480F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	808	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TCCAGGTGTTCAAGACGGGCT	0.428													3	57					0	0	0.004672	0	0
GPR110	266977	broad.mit.edu	37	6	46975030	46975030	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:46975030C>T	uc003oyt.2	-	12	2691	c.2492G>A	c.(2491-2493)GGA>GAA	p.G831E	GPR110_uc011dwl.1_Missense_Mutation_p.G519E	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	831	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GATAAAAAATCCCTTTAAAAA	0.274													8	31					0	0	0.003080	0	0
CRISP2	7180	broad.mit.edu	37	6	49660530	49660530	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:49660530C>T	uc003ozq.2	-	10	944	c.688G>A	c.(688-690)GAA>AAA	p.E230K	CRISP2_uc003ozl.2_Missense_Mutation_p.E230K|CRISP2_uc003ozn.2_Missense_Mutation_p.E230K|CRISP2_uc003ozr.2_Missense_Mutation_p.E230K|CRISP2_uc003ozo.2_Missense_Mutation_p.E230K|CRISP2_uc003ozm.2_Missense_Mutation_p.E265K|CRISP2_uc003ozp.2_Missense_Mutation_p.E230K	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	230						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTGCACTTTTCCTTGAGTAAC	0.393													35	60					0	0	0.004289	0	0
DEFB112	245915	broad.mit.edu	37	6	50011320	50011320	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:50011320G>A	uc011dws.1	-	2	310	c.310C>T	c.(310-312)CAA>TAA	p.Q104*		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	104					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					TACCATTCTTGAGTCCCTACT	0.408													14	30					0	0	0.003163	0	0
PKHD1	5314	broad.mit.edu	37	6	51889493	51889493	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:51889493C>T	uc003pah.1	-	32	5391	c.5115G>A	c.(5113-5115)GTG>GTA	p.V1705V	PKHD1_uc003pai.2_Silent_p.V1705V	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1705	IPT/TIG 12; atypical.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GGGAAGGGACCACGCACTGAA	0.527													15	57					0	0	0.002450	0	0
GSTA1	2938	broad.mit.edu	37	6	52656671	52656671	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:52656671C>T	uc003paz.2	-	7	766	c.654G>A	c.(652-654)AAG>AAA	p.K218K		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	218					glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	ACCTGAAAATCTTCCTTGCTT	0.413													27	93					0	0	0.005443	0	0
LRRC1	55227	broad.mit.edu	37	6	53764569	53764569	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:53764569C>T	uc003pcd.1	+	8	944	c.667C>T	c.(667-669)CTG>TTG	p.L223L		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	223	LRR 10.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		GAAGAACCTGCTGTGTTTAGA	0.383													15	53					0	0	0.004990	0	0
TINAG	27283	broad.mit.edu	37	6	54173598	54173598	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:54173598G>A	uc003pcj.2	+	1	396	c.250G>A	c.(250-252)GAT>AAT	p.D84N	TINAG_uc003pci.2_Missense_Mutation_p.D84N|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	84	SMB.				cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GTGCTACTGTGATAAATTCTG	0.448													55	104					0	0	0.003610	0	0
FAM83B	222584	broad.mit.edu	37	6	54805639	54805639	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:54805639T>C	uc003pck.2	+	5	1986	c.1870T>C	c.(1870-1872)TTA>CTA	p.L624L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	624										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTCAGTAGCCTTAAACCAAAC	0.403													19	42					0	0	0.001523	0	0
HCRTR2	3062	broad.mit.edu	37	6	55142322	55142322	+	Missense_Mutation	SNP	G	A	A	rs35417906		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:55142322G>A	uc003pcl.2	+	5	1222	c.907G>A	c.(907-909)GCC>ACC	p.A303T	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	303	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AAGGAAAACAGCCCGGATGTT	0.468													16	37					0	0	0.006122	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62688069	62688069	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:62688069C>T	uc003peg.2	-	4	632	c.385G>A	c.(385-387)GAT>AAT	p.D129N		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	129	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TGAAGCTCATCACTCAAGTGG	0.373													14	20					0	0	0.002450	0	0
EYS	346007	broad.mit.edu	37	6	66205080	66205080	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:66205080G>A	uc011dxu.1	-	4	762	c.224C>T	c.(223-225)CCC>CTC	p.P75L	EYS_uc003peq.2_Missense_Mutation_p.P75L|EYS_uc003per.1_Missense_Mutation_p.P75L|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	75					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						GCAAATCTGGGGAACAGCTTG	0.353													28	60					0	0	0.001786	0	0
BAI3	577	broad.mit.edu	37	6	69349060	69349060	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:69349060C>T	uc003pev.3	+	3	941	c.493C>T	c.(493-495)CAG>TAG	p.Q165*	BAI3_uc010kak.2_Nonsense_Mutation_p.Q165*	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	165	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CAGCCCAAGCCAGTTTGGTTG	0.383													31	50					0	0	0.003271	0	0
BAI3	577	broad.mit.edu	37	6	70064186	70064186	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:70064186C>T	uc003pev.3	+	27	3969	c.3521C>T	c.(3520-3522)TCG>TTG	p.S1174L	BAI3_uc010kak.2_Missense_Mutation_p.S1174L|BAI3_uc011dxx.1_Missense_Mutation_p.S380L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1174	Poly-Ser.|Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GCAGATTCTTCGAGTTCGTTT	0.393													45	63					0	0	0.003610	0	0
COL19A1	1310	broad.mit.edu	37	6	70744136	70744136	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:70744136G>A	uc003pfc.1	+	13	1198	c.1081_splice	c.e13-1	p.G361_splice	COL19A1_uc010kam.1_Splice_Site_p.G257_splice	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor						cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TCTTTCTACAGGGTTTGAAAG	0.373													19	32					0	0	0.002299	0	0
RIMS1	22999	broad.mit.edu	37	6	72596824	72596824	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:72596824G>A	uc003pga.2	+	1	175	c.98G>A	c.(97-99)AGG>AAG	p.R33K		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	33	RabBD.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GAAGAGGAGAGGAACATTATC	0.622													10	8					0	0	0.006214	0	0
KHDC1	80759	broad.mit.edu	37	6	73919676	73919676	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:73919676C>T	uc011dyl.1	-	8		c.1417G>A						Q4VXA5	KHDC1_HUMAN	Homo sapiens cDNA FLJ30329 fis, clone BRACE2007201.							integral to membrane	RNA binding			skin(1)	1						AAAGGCCACTCACCAAAGATG	0.493													9	13					0	0	0.000978	0	0
FILIP1	27145	broad.mit.edu	37	6	76022922	76022922	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:76022922T>A	uc003pia.2	-	5	2999	c.2626A>T	c.(2626-2628)AGG>TGG	p.R876W	FILIP1_uc003phy.1_Missense_Mutation_p.R876W|FILIP1_uc003phz.2_Missense_Mutation_p.R777W|FILIP1_uc010kbe.2_Missense_Mutation_p.R879W|FILIP1_uc003pib.1_Missense_Mutation_p.R628W	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	876										skin(3)|ovary(1)	4						CCGTTTTCCCTCTTTCTCATC	0.512													35	52					0	0	0.002836	0	0
FILIP1	27145	broad.mit.edu	37	6	76023074	76023074	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:76023074C>T	uc003pia.2	-	5	2847	c.2474G>A	c.(2473-2475)CGG>CAG	p.R825Q	FILIP1_uc003phy.1_Missense_Mutation_p.R825Q|FILIP1_uc003phz.2_Missense_Mutation_p.R726Q|FILIP1_uc010kbe.2_Missense_Mutation_p.R828Q|FILIP1_uc003pib.1_Missense_Mutation_p.R577Q	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	825										skin(3)|ovary(1)	4						GAAGGATTTCCGTATGAATAC	0.463													79	141					0	0	0.003610	0	0
FILIP1	27145	broad.mit.edu	37	6	76023710	76023710	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:76023710C>T	uc003pia.2	-	5	2211	c.1838G>A	c.(1837-1839)GGA>GAA	p.G613E	FILIP1_uc003phy.1_Missense_Mutation_p.G613E|FILIP1_uc003phz.2_Missense_Mutation_p.G514E|FILIP1_uc010kbe.2_Missense_Mutation_p.G616E|FILIP1_uc003pib.1_Missense_Mutation_p.G365E	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	613										skin(3)|ovary(1)	4						TCGTGACCTTCCTCTTGTTAT	0.388													75	127					0	0	0.003610	0	0
IBTK	25998	broad.mit.edu	37	6	82924513	82924513	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:82924513G>A	uc003pjl.1	-	12	2162	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	IBTK_uc011dyv.1_Silent_p.S545S|IBTK_uc011dyw.1_Intron|IBTK_uc010kbi.1_Silent_p.S239S|IBTK_uc003pjm.2_Silent_p.S545S	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	545					negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		CTTCAAAAAAGGATGATGAGG	0.373													31	19					0	0	0.003755	0	0
FUT9	10690	broad.mit.edu	37	6	96651183	96651183	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:96651183A>T	uc003pop.3	+	3	493	c.152A>T	c.(151-153)AAA>ATA	p.K51I		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	51	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CTGAAAATGAAAAACTTCTTT	0.428													30	13					0	0	0.008361	0	0
AIM1	202	broad.mit.edu	37	6	106978146	106978146	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:106978146T>C	uc003prh.2	+	6	3937	c.3450T>C	c.(3448-3450)TTT>TTC	p.F1150F		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1150	Beta/gamma crystallin 'Greek key' 3.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TGCAGGGATTTGGTGTAATGC	0.343													37	30					0	0	0.007835	0	0
C6orf186	728464	broad.mit.edu	37	6	110620283	110620283	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:110620283G>A	uc010kdu.1	-	4	628	c.628C>T	c.(628-630)CCT>TCT	p.P210S	C6orf186_uc003pub.2_Missense_Mutation_p.P13S	NM_001123364	NP_001116836	Q5JXM2	CF186_HUMAN	chromosome 6 open reading frame 186 precursor	210						extracellular region					0						TTGACACTAGGATCAAAACGA	0.478													37	11					0	0	0.002522	0	0
RPF2	84154	broad.mit.edu	37	6	111303331	111303331	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:111303331G>C	uc003pun.2	+	1	41	c.22G>C	c.(22-24)GTA>CTA	p.V8L	RPF2_uc003puo.2_5'UTR	NM_032194	NP_115570	Q9H7B2	RPF2_HUMAN	brix domain containing 1	8						nucleolus	protein binding			ovary(2)	2						GGATCGAGTAGTGTAAGTGCG	0.617													10	26					0	0	0.002450	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113321	117113321	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:117113321C>T	uc003pxj.1	-	6	2787	c.2765G>A	c.(2764-2766)AGA>AAA	p.R922K	GPRC6A_uc003pxk.1_Missense_Mutation_p.R747K|GPRC6A_uc003pxl.1_Missense_Mutation_p.R851K	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	922	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		ACTTGACATTCTTTTTCGAGG	0.383													48	29					0	0	0.003610	0	0
RFX6	222546	broad.mit.edu	37	6	117201826	117201826	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:117201826G>A	uc003pxm.2	+	3	563	c.500G>A	c.(499-501)GGA>GAA	p.G167E		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	167	RFX-type winged-helix.				glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GCCACCTTTGGAAAGGTAAAT	0.403													8	4					0	0	0.006214	0	0
ROS1	6098	broad.mit.edu	37	6	117677936	117677936	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:117677936C>T	uc003pxp.1	-	25	4196	c.3997G>A	c.(3997-3999)GAA>AAA	p.E1333K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1333	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AACTCAAATTCAGTCACATTA	0.398			T	GOPC|ROS1	glioblastoma|NSCLC								19	16					0	0	0.008871	0	0
NKAIN2	154215	broad.mit.edu	37	6	125112496	125112496	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:125112496C>T	uc003pzo.2	+	5	763	c.486C>T	c.(484-486)TTC>TTT	p.F162F	NKAIN2_uc003pzp.2_Silent_p.F161F|NKAIN2_uc010keq.2_Silent_p.F95F|NKAIN2_uc010ker.2_Silent_p.F72F	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	162	Helical; (Potential).					integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		TGGCAGGTTTCATCTACGCCT	0.403													13	9					0	0	0.003163	0	0
RNF217	154214	broad.mit.edu	37	6	125379091	125379091	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:125379091C>T	uc003pzs.2	+	5	582	c.244C>T	c.(244-246)CAG>TAG	p.Q82*	RNF217_uc003pzr.2_Nonsense_Mutation_p.Q139*|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	82	IBR-type.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		TACACAGATCCAGTGCCCTAC	0.383													28	8					0	0	0.006320	0	0
THEMIS	387357	broad.mit.edu	37	6	128150684	128150684	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:128150684G>A	uc003qbi.2	-	4	965	c.646C>T	c.(646-648)CCT>TCT	p.P216S	THEMIS_uc010kfa.2_Missense_Mutation_p.P119S|THEMIS_uc011ebt.1_Missense_Mutation_p.P216S|THEMIS_uc010kfb.2_Missense_Mutation_p.P181S	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	216	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						AAGTCTTTAGGAAATGGATTC	0.363													22	20					0	0	0.002780	0	0
LAMA2	3908	broad.mit.edu	37	6	129813560	129813560	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:129813560G>A	uc003qbn.2	+	57	8281	c.8176G>A	c.(8176-8178)GAA>AAA	p.E2726K	LAMA2_uc003qbo.2_Missense_Mutation_p.E2722K|uc003qbq.2_Intron	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2726					cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AGCTCCAGCTGAAATAGTTAT	0.498													32	20					0	0	0.002445	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130404819	130404819	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:130404819C>T	uc003qbt.2	+	15	1546	c.1376C>T	c.(1375-1377)TCT>TTT	p.S459F	L3MBTL3_uc003qbu.2_Missense_Mutation_p.S434F	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	459	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		GAAACCAATTCTTTACCTGCT	0.299													11	10					0	0	0.002450	0	0
MED23	9439	broad.mit.edu	37	6	131937093	131937093	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:131937093G>A	uc003qcs.1	-	10	1004	c.830C>T	c.(829-831)CCT>CTT	p.P277L	MED23_uc003qcq.2_Missense_Mutation_p.P277L|MED23_uc003qct.1_Missense_Mutation_p.P277L|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	277					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		CCTGGAATAAGGCTGCTCCAA	0.353													21	7					0	0	0.004656	0	0
VNN2	8875	broad.mit.edu	37	6	133070844	133070844	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:133070844C>T	uc003qdt.2	-	6	1372	c.1361G>A	c.(1360-1362)GGA>GAA	p.G454E	VNN2_uc003qds.2_Missense_Mutation_p.G163E|VNN2_uc010kgb.2_Missense_Mutation_p.G233E|VNN2_uc003qdv.2_Missense_Mutation_p.G401E	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	454					cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		CTCAAATTTTCCAGGTGACAG	0.343													9	7					0	0	0.008291	0	0
SLC2A12	154091	broad.mit.edu	37	6	134349724	134349724	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:134349724G>A	uc003qem.1	-	2	1410	c.1239C>T	c.(1237-1239)TCC>TCT	p.S413S		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	413	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		TTCTGCTATGGGAAGAAATCC	0.453													31	16					0	0	0.002445	0	0
PDE7B	27115	broad.mit.edu	37	6	136500196	136500196	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:136500196G>A	uc003qgp.2	+	10	1168	c.865G>A	c.(865-867)GAA>AAA	p.E289K	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.E341K	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	289	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	CAGGCAGAATGAATTTTTGAC	0.418													39	26					0	0	0.006999	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599243	136599243	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:136599243G>A	uc003qgx.1	-	4	1029	c.776C>T	c.(775-777)TCT>TTT	p.S259F	BCLAF1_uc003qgw.1_Missense_Mutation_p.S259F|BCLAF1_uc003qgy.1_Missense_Mutation_p.S257F|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.S257F	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	259					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TGAATGCTGAGAAGGAGTATT	0.448													4	37					0	0	0.000248	0	0
PLAGL1	5325	broad.mit.edu	37	6	144263115	144263115	+	Missense_Mutation	SNP	C	T	T	rs141235151		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:144263115C>T	uc003qjv.2	-	3	2104	c.838G>A	c.(838-840)GAG>AAG	p.E280K	PLAGL1_uc003qjx.2_Missense_Mutation_p.E280K|PLAGL1_uc003qjy.2_Missense_Mutation_p.E280K|PLAGL1_uc010khl.2_Missense_Mutation_p.E280K|PLAGL1_uc010khm.2_Missense_Mutation_p.E280K|PLAGL1_uc003qjz.2_Missense_Mutation_p.E280K|PLAGL1_uc003qka.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkb.2_Missense_Mutation_p.E228K|PLAGL1_uc003qkc.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkd.2_Missense_Mutation_p.E228K|PLAGL1_uc003qke.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkf.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkg.2_Missense_Mutation_p.E228K|PLAGL1_uc003qkh.2_Missense_Mutation_p.E280K|PLAGL1_uc003qki.2_Missense_Mutation_p.E228K|PLAGL1_uc003qkj.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkk.2_Missense_Mutation_p.E228K|PLAGL1_uc003qkl.2_Missense_Mutation_p.E228K|PLAGL1_uc003qkm.2_Missense_Mutation_p.E280K|PLAGL1_uc010khn.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkn.2_Missense_Mutation_p.E228K|PLAGL1_uc003qko.2_Missense_Mutation_p.E280K|PLAGL1_uc003qkp.2_Missense_Mutation_p.E228K|PLAGL1_uc003qjw.2_Missense_Mutation_p.E228K	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	280					cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		GCCAGGGACTCTGGCAGCGGC	0.612											OREG0017707	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	180	101					0	0	0.003610	0	0
UTRN	7402	broad.mit.edu	37	6	144843240	144843240	+	Missense_Mutation	SNP	C	T	T	rs144099534		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:144843240C>T	uc003qkt.2	+	39	5758	c.5666C>T	c.(5665-5667)TCG>TTG	p.S1889L		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1889					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GTTGAATTATCGCTTAATGTT	0.393													53	26					0	0	0.003610	0	0
TAB2	23118	broad.mit.edu	37	6	149691193	149691193	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:149691193C>T	uc003qmj.2	+	2	238	c.60C>T	c.(58-60)TTC>TTT	p.F20F	TAB2_uc011eec.1_Intron|TAB2_uc010kia.1_Silent_p.F20F|TAB2_uc010kib.1_Silent_p.F20F|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	20	CUE.				activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						GACAAAAATTCCCTGAAGTAC	0.373													17	16					0	0	0.007413	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149783102	149783102	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:149783102C>T	uc003qmn.1	-	2	380	c.310G>A	c.(310-312)GGA>AGA	p.G104R	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Missense_Mutation_p.G104R|ZC3H12D_uc010kid.2_Missense_Mutation_p.G104R	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	104						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		TCTTTATTTCCATGGCTACAA	0.438													10	4					0	0	0.001368	0	0
C6orf97	80129	broad.mit.edu	37	6	151859284	151859284	+	Silent	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:151859284C>A	uc003qol.2	+	3	380	c.291C>A	c.(289-291)CTC>CTA	p.L97L		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	97	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		AATCATCTCTCCTTACCTCTT	0.418													12	8					1.05317e-09	1.44998e-09	0.002450	1	0
SYNE1	23345	broad.mit.edu	37	6	152725357	152725357	+	Silent	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:152725357T>C	uc010kiw.2	-	46	7418	c.6816A>G	c.(6814-6816)CCA>CCG	p.P2272P	SYNE1_uc003qot.3_Silent_p.P2279P|SYNE1_uc003qou.3_Silent_p.P2272P|SYNE1_uc010kjb.1_Silent_p.P2255P	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2272	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCTGAAGGTCTGGCGGTGTTT	0.313										HNSCC(10;0.0054)			29	22					0	0	0.007291	0	0
TIAM2	26230	broad.mit.edu	37	6	155458691	155458691	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:155458691G>A	uc003qqb.2	+	7	2848	c.1575G>A	c.(1573-1575)AGG>AGA	p.R525R	TIAM2_uc003qqe.2_Silent_p.R525R|TIAM2_uc010kjj.2_Silent_p.R58R	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	525	PH 1.				apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGAAGGAAAGGAAGCTTGAGC	0.562													21	9					0	0	0.001882	0	0
SNX9	51429	broad.mit.edu	37	6	158318009	158318009	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:158318009C>T	uc003qqv.1	+	5	624	c.451C>T	c.(451-453)CCC>TCC	p.P151S		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	151					cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		CTTCGGCCACCCCCAGGCCTA	0.567													10	11					0	0	0.008291	0	0
TULP4	56995	broad.mit.edu	37	6	158924506	158924507	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:158924506_158924507CC>TT	uc003qrf.2	+	13	5168_5169	c.3811_3812CC>TT	c.(3811-3813)CCC>TTC	p.P1271F	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1271					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CGCCTGCCCGCCCATGCAGAAC	0.629													26	14					0	0	0.004672	0	0
OSTCL	202459	broad.mit.edu	37	6	159262913	159262913	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:159262913C>T	uc003qrw.2	-	3	431	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_145303	NP_660346			oligosaccharyltransferase complex subunit-like												0						ACCTAAACCTCCTATTGTAAA	0.408													29	14					0	0	0.002836	0	0
FNDC1	84624	broad.mit.edu	37	6	159654087	159654087	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:159654087C>T	uc010kjv.2	+	11	2743	c.2543C>T	c.(2542-2544)TCC>TTC	p.S848F	FNDC1_uc010kjw.1_Missense_Mutation_p.S733F	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	848						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CCCTCCAGCTCCCCACAGTCG	0.602													6	2					0	0	0.001168	0	0
C6orf118	168090	broad.mit.edu	37	6	165715408	165715409	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:165715408_165715409GG>AA	uc003qum.3	-	2	438_439	c.402_403CC>TT	c.(400-405)CCCCAG>CCTTAG	p.Q135*	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	135											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		AGAGAGGCCTGGGGGTTCAGGT	0.624													34	17					0	0	0.004672	0	0
FRMD1	79981	broad.mit.edu	37	6	168461452	168461452	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:168461452C>T	uc003qwo.3	-	9	1396	c.1331G>A	c.(1330-1332)GGT>GAT	p.G444D	FRMD1_uc003qwm.3_Missense_Mutation_p.G238D|FRMD1_uc011egs.1_Missense_Mutation_p.G215D|FRMD1_uc011egt.1_Missense_Mutation_p.G379D|FRMD1_uc003qwn.3_Missense_Mutation_p.G376D	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	444						cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		TTGGCTGTCACCACGTGTGCT	0.667													23	6					0	0	0.006320	0	0
FRMD1	79981	broad.mit.edu	37	6	168468049	168468049	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr6:168468049C>T	uc003qwo.3	-	3	447	c.382G>A	c.(382-384)GAA>AAA	p.E128K	FRMD1_uc003qwm.3_5'Flank|FRMD1_uc011egs.1_5'UTR|FRMD1_uc011egt.1_Missense_Mutation_p.E40K|FRMD1_uc003qwn.3_Missense_Mutation_p.E60K	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	128	FERM.					cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		ACACTTACTTCATTTCTTTCT	0.512													33	19					0	0	0.003755	0	0
CARD11	84433	broad.mit.edu	37	7	2977616	2977617	+	Missense_Mutation	DNP	CT	GA	GA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:2977616_2977617CT>GA	uc003smv.2	-	8	1471_1472	c.1067_1068AG>TC	c.(1066-1068)AAG>ATC	p.K356I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	356	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TTTCACAGTCCTTTCCCAGGGT	0.559			Mis		DLBCL								23	49					0	0	0.004672	0	0
CARD11	84433	broad.mit.edu	37	7	2977622	2977622	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:2977622C>T	uc003smv.2	-	8	1466	c.1062G>A	c.(1060-1062)CTG>CTA	p.L354L		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	354	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity	p.Y354H(1)		haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		AGTCCTTTCCCAGGGTCGAGC	0.557			Mis		DLBCL								25	53					0	0	0.003755	0	0
SDK1	221935	broad.mit.edu	37	7	4116724	4116724	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:4116724C>T	uc003smx.2	+	21	3244	c.3105C>T	c.(3103-3105)CTC>CTT	p.L1035L	SDK1_uc010kso.2_Silent_p.L311L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1035	Fibronectin type-III 4.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TCCAAGGCCTCTCATCTCTCA	0.572													12	35					0	0	0.002450	0	0
SDK1	221935	broad.mit.edu	37	7	4153707	4153707	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:4153707C>T	uc003smx.2	+	25	3763	c.3624C>T	c.(3622-3624)TCC>TCT	p.S1208S	SDK1_uc010kso.2_Silent_p.S484S	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1208	Fibronectin type-III 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ACCCCGAGTCCGTGGGCTACA	0.587													25	19					0	0	0.002780	0	0
SLC29A4	222962	broad.mit.edu	37	7	5330756	5330756	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:5330756G>A	uc003sod.2	+	4	464	c.303G>A	c.(301-303)GGG>GGA	p.G101G	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Silent_p.G101G|SLC29A4_uc003soe.2_Silent_p.G101G	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	101	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		CCTCTGCAGGGACCTCCATCG	0.592													29	24					0	0	0.001786	0	0
COL28A1	340267	broad.mit.edu	37	7	7516759	7516759	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:7516759C>T	uc003src.1	-	14	1334	c.1217G>A	c.(1216-1218)GGA>GAA	p.G406E	COL28A1_uc011jxe.1_Missense_Mutation_p.G89E|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	406					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TCCTGGAAATCCTTCTCCGGG	0.373													46	38					0	0	0.003610	0	0
ICA1	3382	broad.mit.edu	37	7	8167558	8167558	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:8167558G>T	uc003srm.2	-	13	1342	c.1275C>A	c.(1273-1275)TTC>TTA	p.F425L	ICA1_uc010ktr.2_Missense_Mutation_p.F454L|ICA1_uc003srl.2_Missense_Mutation_p.F413L|ICA1_uc003srn.3_Missense_Mutation_p.F351L|ICA1_uc003srp.3_Missense_Mutation_p.F424L|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Missense_Mutation_p.F425L|ICA1_uc003srr.2_Missense_Mutation_p.F424L|ICA1_uc003sro.3_Missense_Mutation_p.F425L	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	425					neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		GCGAAGGAAGGAAACCTGAGC	0.522													33	178					2.19489e-29	3.04265e-29	0.006230	1	0
PHF14	9678	broad.mit.edu	37	7	11076223	11076223	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:11076223C>T	uc003sry.1	+	9	2216	c.1781C>T	c.(1780-1782)CCA>CTA	p.P594L	PHF14_uc011jxi.1_Missense_Mutation_p.P309L|PHF14_uc003srz.2_Missense_Mutation_p.P594L|PHF14_uc011jxj.1_Missense_Mutation_p.P309L	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	594							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		GATATCTTTCCAGTGGACAAT	0.418													41	23					0	0	0.003610	0	0
THSD7A	221981	broad.mit.edu	37	7	11485797	11485797	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:11485797C>T	uc003ssf.3	-	13	3207	c.2955G>A	c.(2953-2955)ATG>ATA	p.M985I		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	985	TSP type-1 10.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CTTGTACTTTCATTCCCAGCA	0.433										HNSCC(18;0.044)			31	115					0	0	0.001786	0	0
ARL4A	10124	broad.mit.edu	37	7	12728360	12728360	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:12728360C>T	uc003ssp.2	+	2	758	c.481C>T	c.(481-483)CCT>TCT	p.P161S	ARL4A_uc003ssq.2_Missense_Mutation_p.P161S|ARL4A_uc003ssr.2_Missense_Mutation_p.P161S|ARL4A_uc003sss.2_Missense_Mutation_p.P161S	NM_001037164	NP_001032241	P40617	ARL4A_HUMAN	ADP-ribosylation factor-like 4A	161					small GTPase mediated signal transduction	cytoplasm|nucleolus|plasma membrane	GTP binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.176)		CTCATCAACTCCTTGGCATTT	0.388													45	32					0	0	0.003610	0	0
STK31	56164	broad.mit.edu	37	7	23776582	23776582	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:23776582A>G	uc003sws.3	+	8	969	c.902A>G	c.(901-903)AAG>AGG	p.K301R	STK31_uc003swt.3_Missense_Mutation_p.K278R|STK31_uc011jze.1_Missense_Mutation_p.K301R|STK31_uc010kuq.2_Missense_Mutation_p.K278R	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	301	Potential.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GAAAAAATTAAGCAGGACCAG	0.333													6	32					0	0	0.003080	0	0
MPP6	51678	broad.mit.edu	37	7	24681342	24681342	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:24681342A>C	uc003swx.2	+	4	424	c.125A>C	c.(124-126)GAG>GCG	p.E42A	MPP6_uc003swy.2_Missense_Mutation_p.E42A	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	42	L27 1.				protein complex assembly		protein binding				0						CAGGCTCATGAGAGGCTAGAA	0.303													6	40					0	0	0.003080	0	0
HOXA1	3198	broad.mit.edu	37	7	27135272	27135272	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:27135272C>T	uc003sye.2	-	1	354	c.260G>A	c.(259-261)GGG>GAG	p.G87E	HOXA1_uc003syd.2_Missense_Mutation_p.G87E|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	87						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						GTAGGACACCCCCAGGTTCCC	0.478											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	32	26					0	0	0.002836	0	0
PDE1C	5137	broad.mit.edu	37	7	31890268	31890268	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:31890268G>A	uc003tcm.1	-	8	1307	c.838C>T	c.(838-840)CAC>TAC	p.H280Y	PDE1C_uc003tcn.1_Missense_Mutation_p.H280Y|PDE1C_uc003tco.1_Missense_Mutation_p.H340Y|PDE1C_uc003tcr.2_Missense_Mutation_p.H280Y|PDE1C_uc003tcs.2_Missense_Mutation_p.H280Y	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	280	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GTCTGAATGTGGAAATTGTTG	0.448													36	32					0	0	0.002222	0	0
PDE1C	5137	broad.mit.edu	37	7	31918775	31918775	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:31918775C>T	uc003tcm.1	-	4	728	c.259G>A	c.(259-261)GAG>AAG	p.E87K	PDE1C_uc003tcn.1_Missense_Mutation_p.E87K|PDE1C_uc003tco.1_Missense_Mutation_p.E147K|PDE1C_uc003tcr.2_Missense_Mutation_p.E87K|PDE1C_uc003tcs.2_Missense_Mutation_p.E87K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	87					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGCTCATCCTCTGTATCCAGG	0.522													11	31					0	0	0.000978	0	0
NPSR1	387129	broad.mit.edu	37	7	34884512	34884512	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:34884512G>A	uc003teg.1	+	7	890	c.762G>A	c.(760-762)GGG>GGA	p.G254G	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.G254G|NPSR1_uc010kwt.1_Silent_p.G101G|NPSR1_uc010kwu.1_Silent_p.G44G|NPSR1_uc010kwv.1_Silent_p.G188G|NPSR1_uc003tei.1_Silent_p.G254G|NPSR1_uc010kww.1_Silent_p.G243G|NPSR1_uc011kar.1_Silent_p.G188G	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	254	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CTACAGATGGGAAACTGTGCA	0.403													7	35					0	0	0.003080	0	0
NPSR1	387129	broad.mit.edu	37	7	34889188	34889188	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:34889188C>T	uc003teg.1	+	9	1165	c.1037C>T	c.(1036-1038)TCA>TTA	p.S346L	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.I379I|NPSR1_uc010kwt.1_Missense_Mutation_p.S193L|NPSR1_uc010kwu.1_Missense_Mutation_p.S136L|NPSR1_uc010kwv.1_Missense_Mutation_p.S280L|NPSR1_uc003tei.1_Intron|NPSR1_uc010kww.1_Intron|NPSR1_uc011kar.1_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	346	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GAGCAAAGATCACAGGATTCC	0.438													59	44					0	0	0.003610	0	0
NPSR1	387129	broad.mit.edu	37	7	34889261	34889261	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:34889261C>T	uc003teg.1	+	9	1238	c.1110C>T	c.(1108-1110)TTC>TTT	p.F370F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_3'UTR|NPSR1_uc010kwt.1_Silent_p.F217F|NPSR1_uc010kwu.1_Silent_p.F160F|NPSR1_uc010kwv.1_Silent_p.F304F|NPSR1_uc003tei.1_Intron|NPSR1_uc010kww.1_Intron|NPSR1_uc011kar.1_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	370	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AGCCAGAATTCATCTAGACCC	0.532													45	21					0	0	0.002852	0	0
TBX20	57057	broad.mit.edu	37	7	35280521	35280521	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:35280521A>G	uc011kas.1	-	5	794	c.783T>C	c.(781-783)TTT>TTC	p.F261F		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	261	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						TGACTGCCGTAAAAACTGTTT	0.403													8	27					0	0	0.004482	0	0
ELMO1	9844	broad.mit.edu	37	7	37262237	37262237	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:37262237G>A	uc003tfk.1	-	10	1070	c.763C>T	c.(763-765)CCT>TCT	p.P255S	ELMO1_uc011kbc.1_Missense_Mutation_p.P159S|ELMO1_uc010kxg.1_Missense_Mutation_p.P255S	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	255					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						CTCTCATCAGGAGCCTTCAGG	0.428													20	74					0	0	0.002299	0	0
INHBA	3624	broad.mit.edu	37	7	41729703	41729703	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:41729703C>T	uc003thq.2	-	2	1061	c.826G>A	c.(826-828)GAA>AAA	p.E276K	INHBA_uc003thr.2_Missense_Mutation_p.E276K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	276					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						gccccaccttcacctccgccc	0.368										TSP Lung(11;0.080)			35	10					0	0	0.002445	0	0
HECW1	23072	broad.mit.edu	37	7	43591895	43591895	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:43591895C>T	uc003tid.1	+	28	5075	c.4470C>T	c.(4468-4470)ATC>ATT	p.I1490I	HECW1_uc011kbi.1_Silent_p.I1456I	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1490	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CCGCGGAAATCGACCTAAATG	0.512													13	93					0	0	0.002450	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579891	44579891	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:44579891G>A	uc003tlb.2	-	2	161	c.105C>T	c.(103-105)TTC>TTT	p.F35F	NPC1L1_uc003tlc.2_Silent_p.F35F|NPC1L1_uc011kbw.1_Silent_p.F35F|NPC1L1_uc003tld.2_Silent_p.F35F	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	35	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ATTCGTCATAGAAGGCGCAGT	0.597													26	21					0	0	0.008361	0	0
PKD1L1	168507	broad.mit.edu	37	7	47847874	47847874	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:47847874C>T	uc003tny.1	-	52	7798	c.7798G>A	c.(7798-7800)GAC>AAC	p.D2600N	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2600	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGGGTGAGGTCCATAAATGCT	0.517													36	21					0	0	0.005524	0	0
ZPBP	11055	broad.mit.edu	37	7	50121476	50121476	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:50121476G>A	uc003tou.2	-	3	298	c.228C>T	c.(226-228)CTC>CTT	p.L76L	ZPBP_uc011kci.1_Silent_p.L2L|ZPBP_uc010kyw.2_Silent_p.L76L	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	76					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					TCTTTTGATGGAGCATGACAT	0.358													12	21					0	0	0.002450	0	0
SEPT14	346288	broad.mit.edu	37	7	55874950	55874950	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:55874950C>T	uc003tqz.2	-	8	936	c.819G>A	c.(817-819)GTG>GTA	p.V273V		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	273					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTTCATTTTCCACTAGTAAAA	0.303													15	51					0	0	0.004007	0	0
ZNF713	349075	broad.mit.edu	37	7	56006968	56006968	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:56006968C>T	uc003trc.1	+	4	600	c.562C>T	c.(562-564)CCT>TCT	p.P188S	ZNF713_uc003tra.1_Missense_Mutation_p.P201S|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GCAGAGAATTCCTTCCATTAA	0.373													10	44					0	0	0.006214	0	0
ZNF107	51427	broad.mit.edu	37	7	64167562	64167562	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:64167562C>T	uc003ttd.2	+	7	1666	c.880C>T	c.(880-882)CAT>TAT	p.H294Y	ZNF107_uc003tte.2_Missense_Mutation_p.H294Y	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	294	C2H2-type 8; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				GGAGAAAATTCATACTGGAGG	0.353													38	30					0	0	0.002522	0	0
ZNF117	51351	broad.mit.edu	37	7	64439054	64439054	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:64439054G>A	uc003ttr.2	-	4	2180	c.895C>T	c.(895-897)CAT>TAT	p.H299Y		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	299	C2H2-type 7.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				TCTCCACTATGAATTCTCTTA	0.358													6	19					0	0	0.001168	0	0
C7orf42	55069	broad.mit.edu	37	7	66410097	66410097	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:66410097C>T	uc003tvk.2	+	3	558	c.294C>T	c.(292-294)ACC>ACT	p.T98T	C7orf42_uc010lah.2_RNA|C7orf42_uc003tvl.2_Silent_p.T98T	NM_017994	NP_060464	Q9NWD8	CG042_HUMAN	hypothetical protein LOC55069	98						integral to membrane				ovary(1)	1						GAGCTTCCACCCAGTCCCCCC	0.567													36	22					0	0	0.005524	0	0
WBSCR17	64409	broad.mit.edu	37	7	71142229	71142229	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:71142229G>A	uc003tvy.2	+	9	1438	c.1438G>A	c.(1438-1440)GAC>AAC	p.D480N	WBSCR17_uc003tvz.2_Missense_Mutation_p.D179N	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	480	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CGTCTGCTTGGACCAGGGGCC	0.532													105	82					0	0	0.003610	0	0
CLIP2	7461	broad.mit.edu	37	7	73790454	73790454	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:73790454C>T	uc003uam.2	+	10	2050	c.1723C>T	c.(1723-1725)CAG>TAG	p.Q575*	CLIP2_uc003uan.2_Nonsense_Mutation_p.Q540*|CLIP2_uc003uao.2_5'UTR	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	575	Potential.					microtubule associated complex				skin(3)	3						GAAGGCCTACCAGGCGGAGGT	0.642													12	18					0	0	0.000978	0	0
CLIP2	7461	broad.mit.edu	37	7	73790813	73790813	+	Silent	SNP	G	A	A	rs149979075	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:73790813G>A	uc003uam.2	+	10	2409	c.2082G>A	c.(2080-2082)GAG>GAA	p.E694E	CLIP2_uc003uan.2_Silent_p.E659E|CLIP2_uc003uao.2_Silent_p.E88E	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	694	Potential.					microtubule associated complex				skin(3)	3						AGGCCCAGGAGGAGCTGGCTG	0.682													4	10					0	0	0.000602	0	0
CLIP2	7461	broad.mit.edu	37	7	73790815	73790815	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:73790815A>T	uc003uam.2	+	10	2411	c.2084A>T	c.(2083-2085)GAG>GTG	p.E695V	CLIP2_uc003uan.2_Missense_Mutation_p.E660V|CLIP2_uc003uao.2_Missense_Mutation_p.E89V	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	695	Potential.					microtubule associated complex				skin(3)	3						GCCCAGGAGGAGCTGGCTGGG	0.687													4	10					0	0	0.000602	0	0
STYXL1	51657	broad.mit.edu	37	7	75634723	75634723	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:75634723C>T	uc003uej.3	-	6	627	c.454_splice	c.e6-1	p.E152_splice	STYXL1_uc003uef.2_Splice_Site|STYXL1_uc011kgf.1_Splice_Site_p.E14_splice|STYXL1_uc011kgg.1_Splice_Site_p.E4_splice|STYXL1_uc003ueh.2_Splice_Site_p.E14_splice|STYXL1_uc003uek.3_Splice_Site_p.E56_splice|STYXL1_uc003uel.2_Splice_Site_p.E152_splice|STYXL1_uc003uem.2_Splice_Site_p.E152_splice|STYXL1_uc010ldg.1_Splice_Site|STYXL1_uc010ldh.1_Splice_Site_p.E152_splice|STYXL1_uc003uen.1_Splice_Site_p.E152_splice	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX						intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						CATCCAGTTCCTGAAGTGTGG	0.493													30	25					0	0	0.003755	0	0
MAGI2	9863	broad.mit.edu	37	7	77756669	77756669	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:77756669C>T	uc003ugx.2	-	19	3522	c.3268G>A	c.(3268-3270)GAC>AAC	p.D1090N	MAGI2_uc003ugy.2_Missense_Mutation_p.D1076N|MAGI2_uc010ldx.1_Missense_Mutation_p.D683N	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1090	Pro-rich.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGCCTGTAGTCTGTGAATGGA	0.537													11	57					0	0	0.002450	0	0
PCLO	27445	broad.mit.edu	37	7	82545811	82545811	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:82545811G>A	uc003uhx.2	-	7	11780	c.11491C>T	c.(11491-11493)CGT>TGT	p.R3831C	PCLO_uc003uhv.2_Missense_Mutation_p.R3831C|PCLO_uc010lec.2_Missense_Mutation_p.R796C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3762					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATGTAATCACGATCCTCAGCT	0.473													53	28					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82583475	82583475	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:82583475G>A	uc003uhx.2	-	5	7083	c.6794C>T	c.(6793-6795)TCC>TTC	p.S2265F	PCLO_uc003uhv.2_Missense_Mutation_p.S2265F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2196					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCAGATAAGGAAATAACAAT	0.393													47	30					0	0	0.003610	0	0
SEMA3E	9723	broad.mit.edu	37	7	83026040	83026040	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:83026040C>T	uc003uhy.1	-	12	1838	c.1372G>A	c.(1372-1374)GGA>AGA	p.G458R		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	458	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				AGCACAATTCCATTATCTGTA	0.264													16	10					0	0	0.006122	0	0
GRM3	2913	broad.mit.edu	37	7	86394825	86394825	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:86394825G>A	uc003uid.2	+	2	1463	c.364G>A	c.(364-366)GAA>AAA	p.E122K	GRM3_uc010lef.2_Missense_Mutation_p.E120K|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	122	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AAAAGTGGATGAAGCTGAGTA	0.433													15	66					0	0	0.004007	0	0
C7orf63	79846	broad.mit.edu	37	7	89937106	89937106	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:89937106G>A	uc010lep.2	+	21	2739	c.2488G>A	c.(2488-2490)GAG>AAG	p.E830K	C7orf63_uc011khj.1_Missense_Mutation_p.E812K|C7orf63_uc011khk.1_Missense_Mutation_p.E346K	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	830							binding			ovary(1)	1						CAAGCAAAGAGAGCTGGCTAA	0.264													15	10					0	0	0.007413	0	0
AKAP9	10142	broad.mit.edu	37	7	91682262	91682262	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:91682262C>T	uc003ulg.2	+	22	5816	c.5591C>T	c.(5590-5592)ACT>ATT	p.T1864I	AKAP9_uc003ulf.2_Missense_Mutation_p.T1864I|AKAP9_uc003uli.2_Missense_Mutation_p.T1487I	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1876	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ATAAGTGAAACTAGCAGTCAG	0.378			T	BRAF	papillary thyroid								4	18					0	0	0.000248	0	0
SAMD9	54809	broad.mit.edu	37	7	92731534	92731534	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:92731534G>A	uc003umf.2	-	3	4133	c.3877C>T	c.(3877-3879)CGG>TGG	p.R1293W	SAMD9_uc003umg.2_Missense_Mutation_p.R1293W	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1293						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ACCTTTCTCCGAGTTTTGGCC	0.333													16	60					0	0	0.004990	0	0
CALCR	799	broad.mit.edu	37	7	93090161	93090161	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:93090161G>A	uc003umv.1	-	9	983	c.722C>T	c.(721-723)CCC>CTC	p.P241L	CALCR_uc011kia.1_Missense_Mutation_p.P21L|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.P207L|CALCR_uc003umw.2_Missense_Mutation_p.P207L	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	223	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CTCTCCATTGGGTACTACTTC	0.403													17	57					0	0	0.004990	0	0
MIR653	724023	broad.mit.edu	37	7	93112077	93112077	+	RNA	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:93112077C>T	hsa-mir-653|MI0003674	-			c.91C>T			CALCR_uc003ums.1_Intron|CALCR_uc003umt.1_Intron|CALCR_uc003umu.1_Intron|CALCR_uc003umv.1_Intron|CALCR_uc003umw.2_Intron																	0						AAGTAGCTTCCATCTTATCAT	0.318													9	50					0	0	0.006214	0	0
CYP3A7	1551	broad.mit.edu	37	7	99305539	99305539	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:99305539C>T	uc003uru.2	-	12	1417	c.1312G>A	c.(1312-1314)GGA>AGA	p.G438R	ZNF498_uc003urn.2_RNA|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	438					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TTTCTGGGTCCACTTCCAAAG	0.383													22	110					0	0	0.003330	0	0
GPC2	221914	broad.mit.edu	37	7	99773255	99773255	+	Silent	SNP	G	A	A	rs142847181	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:99773255G>A	uc003utv.2	-	3	756	c.588C>T	c.(586-588)GCC>GCT	p.A196A	GPC2_uc010lgr.2_RNA|GPC2_uc003utw.1_Silent_p.A196A|STAG3_uc010lgs.1_5'Flank|STAG3_uc003utx.1_5'Flank|STAG3_uc011kjk.1_5'Flank	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	196						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CGGTAGATGAGGCCAAGCGTG	0.627													4	19					0	0	0.000248	0	0
GPC2	221914	broad.mit.edu	37	7	99773368	99773368	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:99773368A>G	uc003utv.2	-	3	643	c.475T>C	c.(475-477)TTG>CTG	p.L159L	GPC2_uc010lgr.2_RNA|GPC2_uc003utw.1_Silent_p.L159L|STAG3_uc010lgs.1_5'Flank|STAG3_uc003utx.1_5'Flank|STAG3_uc011kjk.1_5'Flank	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	159						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GTGTCATCCAACCCCTCACCA	0.597													8	36					0	0	0.003080	0	0
C7orf51	222950	broad.mit.edu	37	7	100086917	100086917	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:100086917C>T	uc003uvd.1	+	4	1732	c.1573C>T	c.(1573-1575)CTC>TTC	p.L525F	C7orf51_uc003uve.1_Missense_Mutation_p.L307F	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	525										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGCTGGGGTCCTCCACCACCG	0.697													4	5					0	0	0.000248	0	0
FBXO24	26261	broad.mit.edu	37	7	100187820	100187820	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:100187820C>T	uc003uvm.1	+	3	455	c.162C>T	c.(160-162)CTC>CTT	p.L54L	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.L54L|FBXO24_uc003uvn.1_Intron|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Silent_p.L92L|FBXO24_uc011kka.1_Silent_p.L42L	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	54	F-box.					ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TCTCATTCCTCCCAGTCAGAG	0.582													7	9					0	0	0.006214	0	0
MUC17	140453	broad.mit.edu	37	7	100680060	100680060	+	Missense_Mutation	SNP	C	T	T	rs145956810	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:100680060C>T	uc003uxp.1	+	3	5416	c.5363C>T	c.(5362-5364)TCG>TTG	p.S1788L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1788	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|28.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGCCACTTCGTCTCCTACA	0.537													159	124					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100685492	100685492	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:100685492C>T	uc003uxp.1	+	3	10848	c.10795C>T	c.(10795-10797)CCT>TCT	p.P3599S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3599	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCTTCCACTCCTTCTGTTGA	0.468													21	105					0	0	0.003954	0	0
MUC17	140453	broad.mit.edu	37	7	100685823	100685823	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:100685823C>T	uc003uxp.1	+	3	11179	c.11126C>T	c.(11125-11127)TCT>TTT	p.S3709F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3709	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGACCAGCTCTGAGGGTAGC	0.517													27	117					0	0	0.004656	0	0
SYPL1	6856	broad.mit.edu	37	7	105739611	105739611	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:105739611G>A	uc003vdp.2	-	3	323	c.241C>T	c.(241-243)CCA>TCA	p.P81S	SYPL1_uc003vdo.2_Missense_Mutation_p.P63S	NM_006754	NP_006745	Q16563	SYPL1_HUMAN	synaptophysin-like 1 isoform a	81	MARVEL.|Vesicular (Potential).				synaptic transmission	cytoplasmic vesicle membrane|integral to plasma membrane|melanosome|synaptic vesicle	transporter activity				0						CACCTGAATGGATAACCAAAA	0.363													22	114					0	0	0.005443	0	0
NAMPT	10135	broad.mit.edu	37	7	105913094	105913095	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:105913094_105913095CC>TT	uc003vdq.2	-	4	636_637	c.328_329GG>AA	c.(328-330)GGG>AAG	p.G110K	NAMPT_uc003vdr.1_Missense_Mutation_p.G110K|NAMPT_uc011klu.1_Missense_Mutation_p.G23K	NM_005746	NP_005737	P43490	NAMPT_HUMAN	nicotinamide phosphoribosyltransferase	110					cell-cell signaling|NAD biosynthetic process|nicotinamide metabolic process|positive regulation of cell proliferation|positive regulation of nitric-oxide synthase biosynthetic process|signal transduction|water-soluble vitamin metabolic process	cytosol	cytokine activity|nicotinamide phosphoribosyltransferase activity|nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			large_intestine(1)	1						TGGAAGATGCCCATCATACTTC	0.376													16	19					0	0	0.004672	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519159	113519160	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:113519159_113519160CC>TT	uc010ljy.1	-	4	2018_2019	c.1987_1988GG>AA	c.(1987-1989)GGA>AAA	p.G663K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	663					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TCTTGATTTTCCCTGACTTTCC	0.361													57	37					0	0	0.004672	0	0
FOXP2	93986	broad.mit.edu	37	7	114282580	114282580	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:114282580C>T	uc003vhb.2	+	7	1265	c.891C>T	c.(889-891)TCC>TCT	p.S297S	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.S322S|FOXP2_uc003vha.2_Silent_p.S205S|FOXP2_uc011kmu.1_Silent_p.S314S|FOXP2_uc011kmv.1_Silent_p.S296S|FOXP2_uc010ljz.1_Silent_p.S205S|FOXP2_uc003vgx.2_Silent_p.S297S|FOXP2_uc003vhd.2_Silent_p.S297S|FOXP2_uc003vhc.2_Silent_p.S322S	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	297				DLTTNNSSSTTSSNT -> EEFPVQGPAAVCAGL (in Ref. 10; AAB91439).	camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						ACAATTCCTCCTCGACTACCT	0.443													35	24					0	0	0.004289	0	0
TFEC	22797	broad.mit.edu	37	7	115624483	115624483	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:115624483G>A	uc003vhj.1	-	2	197	c.13C>T	c.(13-15)CAT>TAT	p.H5Y	TFEC_uc003vhk.1_Missense_Mutation_p.H5Y|TFEC_uc003vhl.3_Missense_Mutation_p.H5Y|TFEC_uc011kmw.1_Missense_Mutation_p.H95Y	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	5	Necessary for transcriptional transactivation.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			ATGATCTGATGATCAAGGGTC	0.478													48	35					0	0	0.003610	0	0
KCND2	3751	broad.mit.edu	37	7	119914951	119914951	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:119914951C>T	uc003vjj.1	+	1	1230	c.265C>T	c.(265-267)CCA>TCA	p.P89S		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	89	Cytoplasmic (Potential).|Interaction with KCNIP1 (By similarity).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TGACCGTGACCCAGACATCTT	0.517													88	70					0	0	0.003610	0	0
KCND2	3751	broad.mit.edu	37	7	119915766	119915766	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:119915766C>T	uc003vjj.1	+	1	2045	c.1080C>T	c.(1078-1080)GCC>GCT	p.A360A		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	360					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCCCTGCAGCCTTCTGGTATA	0.512													13	71					0	0	0.001855	0	0
C7orf58	79974	broad.mit.edu	37	7	120629778	120629778	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:120629778C>T	uc003vjq.3	+	2	550	c.103C>T	c.(103-105)CTC>TTC	p.L35F	C7orf58_uc003vjr.1_Missense_Mutation_p.L35F|C7orf58_uc003vjs.3_Missense_Mutation_p.L35F	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	35						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GACTCTGACCCTCCGAGGGTC	0.587													15	86					0	0	0.007413	0	0
C7orf58	79974	broad.mit.edu	37	7	120740026	120740026	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:120740026G>A	uc003vjq.3	+	7	1243	c.796G>A	c.(796-798)GAA>AAA	p.E266K	C7orf58_uc003vjr.1_Missense_Mutation_p.E266K|C7orf58_uc003vjs.3_Missense_Mutation_p.E266K|C7orf58_uc003vjt.3_Missense_Mutation_p.E46K|C7orf58_uc010lkk.1_Missense_Mutation_p.E46K	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	266						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CTTTCGAGCCGAAGATCTATC	0.408													26	19					0	0	0.006320	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651530	121651530	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:121651530C>T	uc003vjy.2	+	12	2825	c.2430C>T	c.(2428-2430)ATC>ATT	p.I810I	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	810	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TTGAATCCATCCTGTCTTCCT	0.458													85	61					0	0	0.003610	0	0
TAS2R16	50833	broad.mit.edu	37	7	122635433	122635433	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:122635433C>T	uc003vkl.1	-	1	322	c.256G>A	c.(256-258)GAA>AAA	p.E86K		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	86	Helical; Name=3; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						TTAAAAAATTCCCAGGTGATT	0.393													7	22					0	0	0.001984	0	0
IRF5	3663	broad.mit.edu	37	7	128582311	128582311	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:128582311G>A	uc003vog.2	+	2	297	c.176G>A	c.(175-177)GGA>GAA	p.G59E	IRF5_uc010llr.1_Missense_Mutation_p.G59E|IRF5_uc011kot.1_Missense_Mutation_p.G59E|IRF5_uc011kou.1_Missense_Mutation_p.G59E|IRF5_uc010lls.1_Missense_Mutation_p.G59E|IRF5_uc003voh.2_Missense_Mutation_p.G59E|IRF5_uc010llt.2_Missense_Mutation_p.G59E|IRF5_uc003voi.2_Missense_Mutation_p.G59E|IRF5_uc010llu.1_Missense_Mutation_p.G59E|IRF5_uc003vok.2_Missense_Mutation_p.G59E|IRF5_uc003voj.3_Missense_Mutation_p.G59E|IRF5_uc010llv.1_Missense_Mutation_p.G59E|IRF5_uc010llw.1_Missense_Mutation_p.G59E	NM_002200	NP_002191	Q13568	IRF5_HUMAN	interferon regulatory factor 5 isoform a	59	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGCCAGGACGGAGATAACACC	0.582													7	36					0	0	0.004482	0	0
PLXNA4	91584	broad.mit.edu	37	7	131831449	131831449	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:131831449G>A	uc003vra.3	-	28	5104	c.4875C>T	c.(4873-4875)ATC>ATT	p.I1625I	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1625	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCGTGTACCGGATCATGTTTT	0.577													78	57					0	0	0.003610	0	0
CHRM2	1129	broad.mit.edu	37	7	136700313	136700313	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:136700313G>A	uc003vtf.1	+	4	1324	c.701G>A	c.(700-702)AGT>AAT	p.S234N	CHRM2_uc003vtg.1_Missense_Mutation_p.S234N|CHRM2_uc003vtj.1_Missense_Mutation_p.S234N|CHRM2_uc003vtk.1_Missense_Mutation_p.S234N|CHRM2_uc003vtl.1_Missense_Mutation_p.S234N|CHRM2_uc003vtm.1_Missense_Mutation_p.S234N|CHRM2_uc003vti.1_Missense_Mutation_p.S234N|CHRM2_uc003vto.1_Missense_Mutation_p.S234N|CHRM2_uc003vtn.1_Missense_Mutation_p.S234N|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	234	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GTTTCTCCAAGTCTGGTACAA	0.498													4	10					0	0	0.000248	0	0
DGKI	9162	broad.mit.edu	37	7	137282621	137282621	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:137282621C>T	uc003vtt.2	-	12	1284	c.1283G>A	c.(1282-1284)CGA>CAA	p.R428Q	DGKI_uc003vtu.2_Missense_Mutation_p.R128Q	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	428	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						GGCCAGAATTCGCAGATTTGG	0.413													6	31					0	0	0.001984	0	0
HIPK2	28996	broad.mit.edu	37	7	139268718	139268718	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:139268718G>A	uc003vvf.3	-	13	2984	c.2810C>T	c.(2809-2811)TCC>TTC	p.S937F	HIPK2_uc003vvd.3_Missense_Mutation_p.S910F	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	937	Interaction with TP53 and TP73.|Required for localization to nuclear speckles (By similarity).|Interaction with AXIN1 (By similarity).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					CTGCTGCACGGAGTAGGGGCT	0.562													24	17					0	0	0.003954	0	0
HIPK2	28996	broad.mit.edu	37	7	139299045	139299045	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:139299045G>A	uc003vvf.3	-	8	2151	c.1977C>T	c.(1975-1977)CCC>CCT	p.P659P	HIPK2_uc003vvd.3_Silent_p.P632P	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	659	Interaction with SKI and SMAD1.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					GGAAGCCGGGGGGACACACGA	0.612													5	7					0	0	0.001168	0	0
WEE2	494551	broad.mit.edu	37	7	141408682	141408682	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:141408682G>A	uc003vwn.2	+	1	530	c.124G>A	c.(124-126)GAG>AAG	p.E42K	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	42					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CCAAACCCCAGAGAAGGGTGA	0.473													18	99					0	0	0.007413	0	0
MGAM	8972	broad.mit.edu	37	7	141760126	141760126	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:141760126C>T	uc003vwy.2	+	34	4129	c.4075C>T	c.(4075-4077)CCT>TCT	p.P1359S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1359	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCCTGATTTTCCTGATGTTGT	0.438													9	48					0	0	0.008291	0	0
MGAM	8972	broad.mit.edu	37	7	141763375	141763375	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:141763375C>T	uc003vwy.2	+	36	4388	c.4334C>T	c.(4333-4335)CCC>CTC	p.P1445L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1445	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AACCACCCTCCCTACATGCCA	0.557													9	0					0	0	0.006214	0	0
MGAM	8972	broad.mit.edu	37	7	141799479	141799479	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:141799479C>T	uc003vwy.2	+	44	5182	c.5128C>T	c.(5128-5130)CAT>TAT	p.H1710Y		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1710	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CATTAATCTTCATGTCCGTGG	0.498													10	41					0	0	0.006214	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144060399	144060399	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:144060399G>A	uc003wel.2	+	2	755	c.637G>A	c.(637-639)GAG>AAG	p.E213K	ARHGEF5_uc003wek.2_Missense_Mutation_p.E213K	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	213					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					GCTGCCACCTGAGGAGCTGCA	0.557													30	163					0	0	0.002096	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146536922	146536922	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:146536922G>T	uc003weu.1	+	3	844	c.328G>T	c.(328-330)GTG>TTG	p.V110L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	110	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CTCAGATTGGGTGACCCAATA	0.478										HNSCC(39;0.1)			27	22					2.85442e-18	3.94856e-18	0.002096	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147815242	147815242	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:147815242C>T	uc003weu.1	+	16	2932	c.2416C>T	c.(2416-2418)CCA>TCA	p.P806S		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	806	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TTTCCCAAACCCATCCTCCTA	0.438										HNSCC(39;0.1)			61	67					0	0	0.003610	0	0
SSPO	23145	broad.mit.edu	37	7	149497416	149497416	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:149497416G>A	uc010lpk.2	+	50	7174	c.7174G>A	c.(7174-7176)GGC>AGC	p.G2392S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2392	LDL-receptor class A 9.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TGTGCAGTGTGGCCCCGGCCA	0.672													9	11					0	0	0.006214	0	0
SSPO	23145	broad.mit.edu	37	7	149498885	149498885	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:149498885C>T	uc010lpk.2	+	51	7337	c.7337C>T	c.(7336-7338)CCC>CTC	p.P2446L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2446					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			AGCACTGTGCCCTTCATGATG	0.597													13	13					0	0	0.003163	0	0
RARRES2	5919	broad.mit.edu	37	7	150037222	150037222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150037222C>T	uc003wha.2	-	3	363	c.246G>A	c.(244-246)TGG>TGA	p.W82*	RARRES2_uc010lpp.1_Nonsense_Mutation_p.W82*	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	82					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			CGGGTTTCTTCCAGTCCCTCT	0.577													95	415					0	0	0.003610	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389785	150389785	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150389785C>T	uc003who.2	+	3	499	c.411C>T	c.(409-411)GCC>GCT	p.A137A	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	137						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGAGGATGCCATGGGACACA	0.542													9	29					0	0	0.004482	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499405	150499405	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150499405G>A	uc003whx.1	+	3	355	c.277G>A	c.(277-279)GGG>AGG	p.G93R	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	93	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CATCTGGACAGGGGCTGTGGT	0.577													7	24					0	0	0.003080	0	0
ABP1	26	broad.mit.edu	37	7	150558089	150558089	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150558089C>T	uc003why.1	+	6	6266	c.2048C>T	c.(2047-2049)CCC>CTC	p.P683L	ABP1_uc003whz.1_Missense_Mutation_p.P683L|ABP1_uc003wia.1_Missense_Mutation_p.P702L	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	683					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	GAGGACATTCCCAACACAGCC	0.622													12	36					0	0	0.001855	0	0
KCNH2	3757	broad.mit.edu	37	7	150644749	150644749	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150644749C>T	uc003wic.2	-	12	2923	c.2910G>A	c.(2908-2910)GGG>GGA	p.G970G	KCNH2_uc003wib.2_Silent_p.G630G|KCNH2_uc011kux.1_Silent_p.G874G	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	970	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TCAGGGGCTCCCCACCCGGCG	0.731													11	8					0	0	0.008291	0	0
KCNH2	3757	broad.mit.edu	37	7	150647448	150647448	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150647448G>A	uc003wic.2	-	9	2219	c.2206C>T	c.(2206-2208)CTG>TTG	p.L736L	KCNH2_uc003wib.2_Silent_p.L396L|KCNH2_uc011kux.1_Silent_p.L640L|KCNH2_uc003wid.2_Silent_p.L396L|KCNH2_uc003wie.2_Silent_p.L736L	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	736	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TGCTGCAGCAGTGAGCGGTTC	0.647													46	24					0	0	0.003610	0	0
ABCB8	11194	broad.mit.edu	37	7	150732715	150732715	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150732715C>T	uc003wil.3	+	7	957	c.864C>T	c.(862-864)TCC>TCT	p.S288S	ABCB8_uc003wii.2_Silent_p.S308S|ABCB8_uc003wij.3_Silent_p.S271S|ABCB8_uc010lpw.1_Silent_p.S90S|ABCB8_uc010lpx.2_Silent_p.S271S|ABCB8_uc011kvd.1_Silent_p.S183S|ABCB8_uc003wim.3_Silent_p.S66S|ABCB8_uc003wik.3_Silent_p.S271S	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	288	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGTCCCTGTCCATGCTGTCGA	0.657													44	30					0	0	0.008740	0	0
SLC4A2	6522	broad.mit.edu	37	7	150761398	150761399	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150761398_150761399CC>TT	uc003wit.3	+	3	417_418	c.161_162CC>TT	c.(160-162)GCC>GTT	p.A54V	SLC4A2_uc011kve.1_Missense_Mutation_p.A45V|SLC4A2_uc003wiu.3_Missense_Mutation_p.A40V	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	54	Cytoplasmic (Potential).|Pro-rich.				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTACAGGAGGCCGGGTCTCGTG	0.663													6	32					0	0	0.004672	0	0
SLC4A2	6522	broad.mit.edu	37	7	150771341	150771341	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150771341C>T	uc003wit.3	+	17	3007	c.2751C>T	c.(2749-2751)TTC>TTT	p.F917F	SLC4A2_uc011kve.1_Silent_p.F908F|SLC4A2_uc003wiu.3_Silent_p.F903F|SLC4A2_uc003wiv.3_Silent_p.F111F	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	917	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCGCCTTCTTCCTGCGCAAAT	0.647													61	43					0	0	0.003610	0	0
ASB10	136371	broad.mit.edu	37	7	150873258	150873258	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:150873258G>A	uc003wjm.1	-	5	1606	c.1480C>T	c.(1480-1482)CCC>TCC	p.P494S	ASB10_uc003wjl.1_Missense_Mutation_p.P456S|ASB10_uc003wjn.1_Missense_Mutation_p.P434S	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	449	SOCS box.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGTGGCAGGGGGAGGCGGGGC	0.677													11	37					0	0	0.002450	0	0
WDR86	349136	broad.mit.edu	37	7	151093146	151093146	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:151093146G>A	uc003wkb.2	-	3	891	c.442C>T	c.(442-444)CCG>TCG	p.P148S	WDR86_uc003wka.2_Missense_Mutation_p.P106S|WDR86_uc011kvk.1_Missense_Mutation_p.P148S|WDR86_uc003wkc.2_Missense_Mutation_p.P20S	NM_198285	NP_938026	Q86TI4	WDR86_HUMAN	WD repeat domain 86	148	WD 4.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00419)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGTCCCACGGGGCAGAGTAG	0.692													5	21					0	0	0.000602	0	0
CRYGN	155051	broad.mit.edu	37	7	151133346	151133346	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:151133346G>A	uc003wke.2	-	3	432	c.336C>T	c.(334-336)TTC>TTT	p.F112F	CRYGN_uc003wkf.2_Intron|CRYGN_uc003wkg.2_RNA|CRYGN_uc010lqd.1_RNA	NM_144727	NP_653328	Q8WXF5	CRGN_HUMAN	gammaN-crystallin	112	Beta/gamma crystallin 'Greek key' 3.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00358)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGTCCTCCAGGAACTCCAGGC	0.562													19	11					0	0	0.007413	0	0
PRKAG2	51422	broad.mit.edu	37	7	151265868	151265868	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:151265868G>A	uc003wkk.2	-	11	1778	c.1167C>T	c.(1165-1167)GAC>GAT	p.D389D	PRKAG2_uc003wki.2_Silent_p.D148D|PRKAG2_uc011kvl.1_Silent_p.D264D|PRKAG2_uc003wkj.2_Silent_p.D345D|PRKAG2_uc003wkl.2_Intron|PRKAG2_uc010lqe.1_RNA	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	389	CBS 2.				ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		CACTGATAGGGTCAATAACGG	0.383													25	9					0	0	0.003954	0	0
PTPRN2	5799	broad.mit.edu	37	7	157475510	157475510	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:157475510G>A	uc003wno.2	-	13	2029	c.1908C>T	c.(1906-1908)ATC>ATT	p.I636I	PTPRN2_uc003wnp.2_Silent_p.I619I|PTPRN2_uc003wnq.2_Silent_p.I607I|PTPRN2_uc003wnr.2_Silent_p.I598I|PTPRN2_uc011kwa.1_Silent_p.I659I	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	636	Helical; (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGAGGCAGTAGATGAGGCCAG	0.632													56	34					0	0	0.003610	0	0
PTPRN2	5799	broad.mit.edu	37	7	157475513	157475513	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:157475513G>A	uc003wno.2	-	13	2026	c.1905C>T	c.(1903-1905)CTC>CTT	p.L635L	PTPRN2_uc003wnp.2_Silent_p.L618L|PTPRN2_uc003wnq.2_Silent_p.L606L|PTPRN2_uc003wnr.2_Silent_p.L597L|PTPRN2_uc011kwa.1_Silent_p.L658L	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	635	Helical; (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGCAGTAGATGAGGCCAGAGG	0.632													22	61					0	0	0.001882	0	0
PTPRN2	5799	broad.mit.edu	37	7	157874027	157874027	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:157874027G>A	uc003wno.2	-	11	1807	c.1686C>T	c.(1684-1686)GTC>GTT	p.V562V	PTPRN2_uc003wnp.2_Silent_p.V545V|PTPRN2_uc003wnq.2_Silent_p.V533V|PTPRN2_uc003wnr.2_Silent_p.V524V|PTPRN2_uc011kwa.1_Silent_p.V585V	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	562	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TCACGTTTTGGACATTGGCGC	0.373													36	34					0	0	0.008740	0	0
NCAPG2	54892	broad.mit.edu	37	7	158486165	158486165	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr7:158486165G>A	uc003wnv.1	-	3	248	c.103C>T	c.(103-105)CTA>TTA	p.L35L	NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Silent_p.L35L|NCAPG2_uc011kwe.1_Silent_p.L35L	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	35					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		AATTCATTTAGGCTGAAAGGA	0.323													7	34					0	0	0.004482	0	0
MYOM2	9172	broad.mit.edu	37	8	2046768	2046768	+	Missense_Mutation	SNP	C	T	T	rs112847331		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:2046768C>T	uc003wpx.3	+	19	2533	c.2395C>T	c.(2395-2397)CCC>TCC	p.P799S	MYOM2_uc011kwi.1_Missense_Mutation_p.P224S	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	799	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GCCCTCAGATCCCAGTGAGCA	0.612													10	16					0	0	0.001368	0	0
MYOM2	9172	broad.mit.edu	37	8	2057242	2057242	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:2057242T>C	uc003wpx.3	+	25	3238	c.3100T>C	c.(3100-3102)TTC>CTC	p.F1034L	MYOM2_uc011kwi.1_Missense_Mutation_p.F459L	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1034					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GCGGGTTCGCTTCTGGCTCCA	0.443													22	22					0	0	0.001523	0	0
MYOM2	9172	broad.mit.edu	37	8	2089090	2089090	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:2089090C>T	uc003wpx.3	+	34	4129	c.3991C>T	c.(3991-3993)CAG>TAG	p.Q1331*	MYOM2_uc011kwi.1_Nonsense_Mutation_p.Q756*	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1331					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TGCAGAATTCCAGCAATTCAA	0.368													4	30					0	0	0.000602	0	0
CSMD1	64478	broad.mit.edu	37	8	2964163	2964163	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:2964163C>T	uc011kwk.1	-	46	7229	c.6839G>A	c.(6838-6840)GGA>GAA	p.G2280E	CSMD1_uc011kwj.1_Missense_Mutation_p.G1672E|CSMD1_uc010lrg.2_Missense_Mutation_p.G348E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2280	Extracellular (Potential).|Sushi 13.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACAAAATCTCCTAGAAGAGT	0.458													5	8					0	0	0.000602	0	0
CSMD1	64478	broad.mit.edu	37	8	3216730	3216730	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:3216730A>C	uc011kwk.1	-	21	3641	c.3251T>G	c.(3250-3252)CTT>CGT	p.L1084R	CSMD1_uc011kwj.1_Missense_Mutation_p.L476R|CSMD1_uc003wqe.2_Missense_Mutation_p.L240R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1084	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGGCAGGTAAGCTTGGTGGC	0.557													28	34					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	8	7807556	7807556	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:7807556G>A	uc010lro.1	+	5	423	c.141G>A	c.(139-141)GGG>GGA	p.G47G		NM_001039615	NP_001034704			zinc finger protein 705D																		CACTAACAGGGTACCAGATAA	0.398													12	56					0	0	0.003163	0	0
MFHAS1	9258	broad.mit.edu	37	8	8748817	8748817	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:8748817G>A	uc003wsj.1	-	1	2315	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	584	Roc.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		AGCGCAGCTCGAAGTCCCGGG	0.637													26	19					0	0	0.007291	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8998783	8998783	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:8998783G>A	uc003wsn.3	-	2	544	c.379C>T	c.(379-381)CGA>TGA	p.R127*	PPP1R3B_uc003wso.3_Nonsense_Mutation_p.R126*	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	127	CBM21.				glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		GCCTGAAGTCGATTTCTAAAG	0.502													22	34					0	0	0.001882	0	0
RP1L1	94137	broad.mit.edu	37	8	10469422	10469422	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:10469422G>A	uc003wtc.2	-	4	2415	c.2186C>T	c.(2185-2187)TCC>TTC	p.S729F		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	729					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AAGGTCCTGGGAAGGAAGAGA	0.607													7	20					0	0	0.003080	0	0
RP1L1	94137	broad.mit.edu	37	8	10469444	10469444	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:10469444G>A	uc003wtc.2	-	4	2393	c.2164C>T	c.(2164-2166)CCC>TCC	p.P722S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	722					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCCGAGGAGGGAGGTCTCAGG	0.612													5	10					0	0	0.000602	0	0
RP1L1	94137	broad.mit.edu	37	8	10469796	10469796	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:10469796C>T	uc003wtc.2	-	4	2041	c.1812G>A	c.(1810-1812)GCG>GCA	p.A604A		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	604					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTGTCACAGCCGCTCCCGTGG	0.632													32	34					0	0	0.002836	0	0
BLK	640	broad.mit.edu	37	8	11412914	11412914	+	Silent	SNP	G	A	A	rs111642844		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:11412914G>A	uc003wty.2	+	8	1274	c.693G>A	c.(691-693)CAG>CAA	p.Q231Q	BLK_uc003wtz.2_Silent_p.Q160Q	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	231					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		CCTGGGCCCAGGATGAATGGG	0.612													9	45					0	0	0.006214	0	0
TUSC3	7991	broad.mit.edu	37	8	15605946	15605946	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:15605946C>T	uc003wwt.2	+	9	1210	c.1000C>T	c.(1000-1002)CGT>TGT	p.R334C	TUSC3_uc003wwu.2_Missense_Mutation_p.R334C|TUSC3_uc003wwv.2_Missense_Mutation_p.R334C|TUSC3_uc003www.2_Intron|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Intron	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	334					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		TTCAATATTTCGTTCCAAGTA	0.318													52	55					0	0	0.003610	0	0
PIWIL2	55124	broad.mit.edu	37	8	22168740	22168740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:22168740C>T	uc003xbn.2	+	16	2064	c.1916C>T	c.(1915-1917)CCG>CTG	p.P639L	PIWIL2_uc011kzf.1_Missense_Mutation_p.P639L|PIWIL2_uc010ltv.2_Missense_Mutation_p.P639L	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	639					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		ATGAGCCCACCGGCCTGGGTT	0.453													45	61					0	0	0.003610	0	0
CHMP7	91782	broad.mit.edu	37	8	23114091	23114091	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:23114091C>T	uc003xdc.2	+	5	1424	c.776C>T	c.(775-777)TCC>TTC	p.S259F	CHMP7_uc011kzs.1_RNA|CHMP7_uc003xdd.2_Missense_Mutation_p.S149F|CHMP7_uc003xde.2_Missense_Mutation_p.S117F	NM_152272	NP_689485	Q8WUX9	CHMP7_HUMAN	CHMP family, member 7	259	Potential.				cellular membrane organization|late endosome to vacuole transport	cytosol|ESCRT III complex	protein transporter activity				0		Prostate(55;0.0513)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GAGTCCTTATCCCAGGAAGCA	0.517													33	117					0	0	0.003755	0	0
ADAM28	10863	broad.mit.edu	37	8	24170910	24170910	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:24170910C>T	uc003xdy.2	+	6	476	c.393C>T	c.(391-393)TTC>TTT	p.F131F	ADAM28_uc003xdx.2_Silent_p.F131F|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	131					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GGGGCTACTTCAGTCAGGGGG	0.378													13	17					0	0	0.004007	0	0
NEFM	4741	broad.mit.edu	37	8	24772138	24772138	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:24772138G>A	uc003xed.3	+	1	865	c.832G>A	c.(832-834)GAA>AAA	p.E278K	NEFM_uc011lac.1_Missense_Mutation_p.E278K|NEFM_uc010lue.2_5'Flank|uc010luc.1_5'UTR	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	278	Rod.|Coil 2A.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTCCCAGCTCGAAAGCCACTC	0.592													9	16					0	0	0.006214	0	0
EBF2	64641	broad.mit.edu	37	8	25745398	25745398	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:25745398C>T	uc003xes.1	-	9	859	c.842G>A	c.(841-843)GGT>GAT	p.G281D	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	281	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CACTTGGAGACCATCAAAGAA	0.498													15	41					0	0	0.004990	0	0
PNMA2	10687	broad.mit.edu	37	8	26366022	26366022	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:26366022C>T	uc003xez.2	-	3	1020	c.250G>A	c.(250-252)GGA>AGA	p.G84R		NM_007257	NP_009188	Q9UL42	PNMA2_HUMAN	paraneoplastic antigen MA2	84					apoptosis	nucleolus	protein binding				0		all_cancers(63;0.109)|Ovarian(32;2.61e-05)|all_epithelial(46;0.105)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0196)|Epithelial(17;3.13e-11)|Colorectal(74;0.123)		cccccctttccctggacctca	0													6	47					0	0	0.001984	0	0
PTK2B	2185	broad.mit.edu	37	8	27308328	27308328	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:27308328G>A	uc003xfn.1	+	30	3211	c.2403G>A	c.(2401-2403)AAG>AAA	p.K801K	PTK2B_uc003xfo.1_Silent_p.K801K|PTK2B_uc003xfp.1_Silent_p.K801K|PTK2B_uc003xfq.1_Silent_p.K759K|PTK2B_uc003xfs.1_5'UTR	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	801	Interaction with TGFB1I1 (By similarity).				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		AGGCTGAAAAGGTCAAAATGC	0.577													6	20					0	0	0.003080	0	0
SCARA3	51435	broad.mit.edu	37	8	27516076	27516076	+	Missense_Mutation	SNP	G	A	A	rs34791518	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:27516076G>A	uc003xga.1	+	5	530	c.389G>A	c.(388-390)CGA>CAA	p.R130Q	SCARA3_uc003xgb.1_Missense_Mutation_p.R130Q	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	130	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		CCAGAGATCCGAAAACTGCAG	0.562													51	50					0	0	0.003610	0	0
EXTL3	2137	broad.mit.edu	37	8	28574278	28574278	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:28574278C>T	uc003xgz.1	+	3	1295	c.702C>T	c.(700-702)ATC>ATT	p.I234I		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	234	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		ATGCAGACATCGCCTGCCTTT	0.542													8	54					0	0	0.004482	0	0
NRG1	3084	broad.mit.edu	37	8	32621649	32621649	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:32621649A>C	uc003xiv.2	+	12	2169	c.1652A>C	c.(1651-1653)AAG>ACG	p.K551T	NRG1_uc010lvo.2_3'UTR|NRG1_uc003xiu.2_Missense_Mutation_p.K556T|NRG1_uc003xiw.2_Missense_Mutation_p.K548T|NRG1_uc003xit.2_3'UTR|NRG1_uc010lvr.2_Missense_Mutation_p.K293T|NRG1_uc010lvs.2_Missense_Mutation_p.K293T|NRG1_uc010lvp.2_Missense_Mutation_p.K505T|NRG1_uc010lvq.2_Missense_Mutation_p.K488T|NRG1_uc011lbg.1_3'UTR|NRG1_uc011lbh.1_Missense_Mutation_p.K394T|NRG1_uc003xja.2_Missense_Mutation_p.K362T	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	551	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		AAAAGAACCAAGCCCAATGGC	0.498													8	15					0	0	0.003080	0	0
ADAM32	203102	broad.mit.edu	37	8	39079206	39079206	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:39079206C>T	uc003xmt.3	+	13	1556	c.1311C>T	c.(1309-1311)TGC>TGT	p.C437C	ADAM32_uc011lch.1_Silent_p.C338C|ADAM32_uc003xmu.3_Silent_p.C331C|ADAM32_uc003xmv.2_5'UTR	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	437	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			AAGGACTGTGCTGCAAAGACT	0.358													4	19					0	0	0.000248	0	0
ADAM2	2515	broad.mit.edu	37	8	39613303	39613303	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:39613303G>A	uc003xnj.2	-	16	1816	c.1741C>T	c.(1741-1743)CAT>TAT	p.H581Y	ADAM2_uc003xnk.2_Missense_Mutation_p.H562Y|ADAM2_uc011lck.1_Intron|ADAM2_uc003xnl.2_Missense_Mutation_p.H425Y	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	581	Extracellular (Potential).|Cys-rich.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding	p.H581P(1)		ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTGTCTGCATGATCACTGGCA	0.333													19	27					0	0	0.007413	0	0
ADAM2	2515	broad.mit.edu	37	8	39626974	39626974	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:39626974C>T	uc003xnj.2	-	12	1224	c.1149G>A	c.(1147-1149)CAG>CAA	p.Q383Q	ADAM2_uc003xnk.2_Silent_p.Q364Q|ADAM2_uc011lck.1_Silent_p.Q383Q|ADAM2_uc003xnl.2_Silent_p.Q257Q	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	383	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		ACACTGCTTGCTGTTTGAAAA	0.443													11	36					0	0	0.001368	0	0
ADAM2	2515	broad.mit.edu	37	8	39679182	39679182	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:39679182C>T	uc003xnj.2	-	5	343	c.268_splice	c.e5-1	p.N90_splice	ADAM2_uc003xnk.2_Splice_Site_p.N90_splice|ADAM2_uc011lck.1_Splice_Site_p.N90_splice|ADAM2_uc003xnl.2_Splice_Site_p.N90_splice	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein						cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		GGCAGAAATTCTGAAAGATAA	0.308													6	12					0	0	0.001168	0	0
IDO1	3620	broad.mit.edu	37	8	39781029	39781029	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:39781029G>A	uc003xnm.2	+	7	693	c.579G>A	c.(577-579)CGG>CGA	p.R193R	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	193					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TGCAAGAACGGGACACTTTGC	0.358													13	14					0	0	0.003163	0	0
MYST3	7994	broad.mit.edu	37	8	41801328	41801328	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:41801328G>A	uc010lxb.2	-	14	2710	c.2166C>T	c.(2164-2166)ATC>ATT	p.I722I	MYST3_uc010lxc.2_Silent_p.I722I|MYST3_uc003xon.3_Silent_p.I722I|MYST3_uc010lxd.2_Silent_p.I722I	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	722	Mediates interaction with BRPF1, required for histone H3 acetyltransferase activity.|Catalytic.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CTTGAGGGCAGATTCCAGTCA	0.403													12	58					0	0	0.002450	0	0
SNTG1	54212	broad.mit.edu	37	8	51664574	51664574	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:51664574G>A	uc010lxy.1	+	19	1669	c.1298G>A	c.(1297-1299)AGG>AAG	p.R433K	SNTG1_uc003xqs.1_Missense_Mutation_p.R433K|SNTG1_uc010lxz.1_Intron|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	433					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				GTCCTTTGGAGGTATAAATTC	0.333													13	58					0	0	0.003163	0	0
PXDNL	137902	broad.mit.edu	37	8	52336155	52336155	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:52336155T>G	uc003xqu.3	-	14	1876	c.1775A>C	c.(1774-1776)AAC>ACC	p.N592T		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	592	Ig-like C2-type 4.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AAGAAACATGTTGGTCACAGC	0.458													3	21					0	0	0.004672	0	0
RP1	6101	broad.mit.edu	37	8	55538985	55538985	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:55538985G>A	uc003xsd.1	+	4	2691	c.2543G>A	c.(2542-2544)AGA>AAA	p.R848K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	848					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGGTATTTGAGAGGAATGGCA	0.348													13	20					0	0	0.001855	0	0
RP1	6101	broad.mit.edu	37	8	55539794	55539794	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:55539794C>T	uc003xsd.1	+	4	3500	c.3352C>T	c.(3352-3354)CAT>TAT	p.H1118Y	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1118					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGTTCCCTTTCATTCTGCAAT	0.423													17	21					0	0	0.008871	0	0
XKR4	114786	broad.mit.edu	37	8	56015501	56015501	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:56015501C>T	uc003xsf.2	+	1	485	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	151	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CGCTCTTCTTCGTGGTGCTCG	0.652													16	23					0	0	0.004990	0	0
CHD7	55636	broad.mit.edu	37	8	61655534	61655534	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:61655534C>T	uc003xue.2	+	2	2020	c.1543C>T	c.(1543-1545)CCT>TCT	p.P515S		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	515	Pro-rich.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCCAACCTGTCCTCCACTGCA	0.582													4	10					0	0	0.000248	0	0
ARMC1	55156	broad.mit.edu	37	8	66539522	66539522	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:66539522G>A	uc003xvl.2	-	2	347	c.112C>T	c.(112-114)CAG>TAG	p.Q38*	ARMC1_uc011leo.1_5'UTR	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	38					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			AGACATCCCTGATCCTGGACG	0.478													23	78					0	0	0.002780	0	0
VCPIP1	80124	broad.mit.edu	37	8	67578227	67578227	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:67578227G>C	uc003xwn.2	-	1	1226	c.967C>G	c.(967-969)CTA>GTA	p.L323V	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	323	OTU.				protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			AGCCCAGGTAGAAAGGTGGCT	0.443													32	27					0	0	0.002096	0	0
PRDM14	63978	broad.mit.edu	37	8	70981505	70981505	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:70981505G>A	uc003xym.2	-	2	793	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	197					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CCTCCTCCGTGAACTGGAACC	0.602													10	29					0	0	0.006214	0	0
EYA1	2138	broad.mit.edu	37	8	72211355	72211355	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:72211355G>A	uc003xys.3	-	8	1040	c.753C>T	c.(751-753)TCC>TCT	p.S251S	EYA1_uc003xyr.3_Silent_p.S246S|EYA1_uc003xyt.3_Silent_p.S218S|EYA1_uc010lzf.2_Silent_p.S178S|EYA1_uc003xyu.2_Silent_p.S251S|EYA1_uc011lfe.1_Silent_p.S245S|EYA1_uc003xyv.2_Silent_p.S129S	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	251					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			TGGCATTGGTGGATGGTGTCG	0.483													23	51					0	0	0.003954	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764753	77764753	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:77764753G>A	uc003yav.2	+	10	5848	c.5461G>A	c.(5461-5463)GAA>AAA	p.E1821K	ZFHX4_uc003yau.1_Missense_Mutation_p.E1866K|ZFHX4_uc003yaw.1_Missense_Mutation_p.E1821K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1821						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGAAAAGCCAGAAAAACCAAA	0.408										HNSCC(33;0.089)			6	5					0	0	0.003080	0	0
PSKH2	85481	broad.mit.edu	37	8	87081804	87081804	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:87081804C>T	uc011lfy.1	-	1	48	c.48G>A	c.(46-48)CTG>CTA	p.L16L		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	16							ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			TGGCCCAAGCCAGCGCTGGTG	0.741													14	8					0	0	0.004007	0	0
SLC7A13	157724	broad.mit.edu	37	8	87229822	87229822	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:87229822G>A	uc003ydq.1	-	3	1154	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	SLC7A13_uc003ydr.1_Silent_p.I343I	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	352	Helical; Name=9; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						GACTTGTTAAGATAATTGCAA	0.358													42	36					0	0	0.008740	0	0
CNBD1	168975	broad.mit.edu	37	8	88249292	88249292	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:88249292C>T	uc003ydy.2	+	6	771	c.723C>T	c.(721-723)TTC>TTT	p.F241F		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	241										ovary(3)	3						GTGAAGAATTCAAAAACTCTA	0.388													16	19					0	0	0.007413	0	0
MMP16	4325	broad.mit.edu	37	8	89058897	89058897	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:89058897C>T	uc003yeb.3	-	9	1771	c.1489G>A	c.(1489-1491)GGC>AGC	p.G497S		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	497	Hemopexin-like 4.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TGTTGCATACCATTTTCTTTG	0.393													10	33					0	0	0.006214	0	0
HRSP12	10247	broad.mit.edu	37	8	99118530	99118530	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:99118530G>A	uc003yii.1	-	3	290	c.196C>T	c.(196-198)CTG>TTG	p.L66L		NM_005836	NP_005827	P52758	UK114_HUMAN	heat-responsive protein 12	66					regulation of translational termination	nucleus	endonuclease activity			ovary(1)	1	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			GCAGCTTTCAGAATTTCACCC	0.323													41	56					0	0	0.003610	0	0
VPS13B	157680	broad.mit.edu	37	8	100443785	100443785	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:100443785C>T	uc003yiv.2	+	22	3214	c.3103C>T	c.(3103-3105)CCT>TCT	p.P1035S	VPS13B_uc003yiw.2_Missense_Mutation_p.P1035S|VPS13B_uc003yiu.1_Missense_Mutation_p.P1035S|VPS13B_uc003yix.1_Missense_Mutation_p.P505S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1035					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			ATTGTCAGTTCCTGTTAAAGC	0.343													24	39					0	0	0.007291	0	0
SNX31	169166	broad.mit.edu	37	8	101661507	101661507	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:101661507C>T	uc003yjr.2	-	2	287	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	46	PX.				cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			CTCACCTGTTCGTTCCAACCG	0.597													12	10					0	0	0.001855	0	0
RIMS2	9699	broad.mit.edu	37	8	104898241	104898241	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:104898241G>A	uc003yls.2	+	2	989	c.748G>A	c.(748-750)GAA>AAA	p.E250K	RIMS2_uc003ylp.2_Missense_Mutation_p.E472K|RIMS2_uc003ylw.2_Missense_Mutation_p.E280K|RIMS2_uc003ylq.2_Missense_Mutation_p.E280K|RIMS2_uc003ylr.2_Missense_Mutation_p.E280K	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	503					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AACAAAACGGGAAAAAATGGA	0.448										HNSCC(12;0.0054)			6	11					0	0	0.001168	0	0
DPYS	1807	broad.mit.edu	37	8	105463515	105463515	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:105463515C>T	uc003yly.3	-	2	511	c.382G>A	c.(382-384)GAC>AAC	p.D128N		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	128					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AGGCTGTAGTCGCAGCAAACT	0.517													26	24					0	0	0.006320	0	0
ZFPM2	23414	broad.mit.edu	37	8	106456510	106456510	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:106456510G>A	uc003ymd.2	+	3	225	c.202G>A	c.(202-204)GAT>AAT	p.D68N		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	68					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TTTTCCAGGTGATGATGAAGG	0.463													6	10					0	0	0.001168	0	0
ZFPM2	23414	broad.mit.edu	37	8	106573688	106573688	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:106573688G>A	uc003ymd.2	+	4	422	c.399G>A	c.(397-399)ATG>ATA	p.M133I		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	133					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTGGGAAGATGGACTTGAATA	0.433													4	23					0	0	0.000602	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814196	106814196	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:106814196C>T	uc003ymd.2	+	8	1909	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S360F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	629					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ATCAATTCTTCCACTGTCTTA	0.443													20	35					0	0	0.001523	0	0
OXR1	55074	broad.mit.edu	37	8	107722882	107722882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:107722882C>T	uc011lht.1	+	9	1759	c.1660C>T	c.(1660-1662)CGA>TGA	p.R554*	OXR1_uc003ymf.2_Nonsense_Mutation_p.R553*|OXR1_uc011lhu.1_Nonsense_Mutation_p.R546*|OXR1_uc010mcg.2_Intron|OXR1_uc010mch.2_Nonsense_Mutation_p.R251*	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	554					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			GCAAAGGCATCGATTACATAA	0.358													4	22					0	0	0.000602	0	0
TRHR	7201	broad.mit.edu	37	8	110131462	110131462	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:110131462G>A	uc003ymz.3	+	2	991	c.975G>A	c.(973-975)CAG>CAA	p.Q325Q		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	325	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TCATGTCCCAGAAATTCCGTG	0.443													6	64					0	0	0.003080	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110447418	110447418	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:110447418G>A	uc003yne.2	+	29	3445	c.3341_splice	c.e29-1	p.E1114_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTTTCACAAGAAAAAGAGCT	0.388										HNSCC(38;0.096)			16	69					0	0	0.003163	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110454288	110454288	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:110454288G>A	uc003yne.2	+	35	4361	c.4257G>A	c.(4255-4257)GGG>GGA	p.G1419G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1419	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGTCTGTGGGGGACACAGTGG	0.413										HNSCC(38;0.096)			28	18					0	0	0.002836	0	0
SYBU	55638	broad.mit.edu	37	8	110588237	110588237	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:110588237C>T	uc003ynj.3	-	7	1053	c.890G>A	c.(889-891)AGT>AAT	p.S297N	SYBU_uc003yni.3_Missense_Mutation_p.S294N|SYBU_uc003ynk.3_Missense_Mutation_p.S178N|SYBU_uc010mco.2_Missense_Mutation_p.S296N|SYBU_uc003ynl.3_Missense_Mutation_p.S296N|SYBU_uc010mcp.2_Missense_Mutation_p.S297N|SYBU_uc010mcq.2_Missense_Mutation_p.S297N|SYBU_uc003yno.3_Missense_Mutation_p.S178N|SYBU_uc010mcr.2_Missense_Mutation_p.S297N|SYBU_uc003ynm.3_Missense_Mutation_p.S296N|SYBU_uc003ynn.3_Missense_Mutation_p.S296N|SYBU_uc010mcs.2_Missense_Mutation_p.S178N|SYBU_uc010mct.2_Missense_Mutation_p.S297N|SYBU_uc010mcu.2_Missense_Mutation_p.S296N|SYBU_uc003ynp.3_Missense_Mutation_p.S229N|SYBU_uc010mcv.2_Missense_Mutation_p.S297N|SYBU_uc003ynh.3_Missense_Mutation_p.S91N|SYBU_uc011lhw.1_Missense_Mutation_p.S167N	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	297	Potential.|Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						CACGATTTCACTTTCCCTAGA	0.468													5	18					0	0	0.000602	0	0
SLC30A8	169026	broad.mit.edu	37	8	118159264	118159264	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:118159264G>A	uc003yoh.2	+	2	373	c.143G>A	c.(142-144)GGA>GAA	p.G48E	SLC30A8_uc010mcz.2_5'UTR|SLC30A8_uc011lia.1_5'UTR|SLC30A8_uc003yog.2_5'UTR	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	48	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CTGGAGTCAGGAGGCATGTAC	0.507													112	164					0	0	0.003610	0	0
SLC30A8	169026	broad.mit.edu	37	8	118169949	118169949	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:118169949C>T	uc003yoh.2	+	4	668	c.438C>T	c.(436-438)CTC>CTT	p.L146L	SLC30A8_uc010mcz.2_Silent_p.L97L|SLC30A8_uc011lia.1_Silent_p.L97L|SLC30A8_uc003yog.2_Silent_p.L97L	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	146	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			GTGCCCTGCTCTCCATCCTGT	0.517													165	190					0	0	0.003610	0	0
MTBP	27085	broad.mit.edu	37	8	121471542	121471542	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:121471542C>T	uc003ypc.1	+	8	880	c.835C>T	c.(835-837)CTT>TTT	p.L279F	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	279					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TACTGACTTCCTTGCCAAAAA	0.294													16	32					0	0	0.004007	0	0
ZHX1	11244	broad.mit.edu	37	8	124267562	124267562	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:124267562C>T	uc003yqe.2	-	3	1055	c.625G>A	c.(625-627)GAG>AAG	p.E209K	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.E209K|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.E209K	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	209					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TTCTCTTTCTCTTCAGGAACG	0.328													32	43					0	0	0.002445	0	0
ZHX1	11244	broad.mit.edu	37	8	124267564	124267564	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:124267564T>A	uc003yqe.2	-	3	1053	c.623A>T	c.(622-624)GAA>GTA	p.E208V	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.E208V|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.E208V	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	208					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			CTCTTTCTCTTCAGGAACGTC	0.338													34	45					0	0	0.002836	0	0
ATAD2	29028	broad.mit.edu	37	8	124371509	124371509	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:124371509G>A	uc003yqh.3	-	11	1442	c.1334C>T	c.(1333-1335)CCA>CTA	p.P445L	ATAD2_uc011lii.1_Missense_Mutation_p.P236L|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.P445L	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			ATAAAGTAATGGAAACACCAC	0.323													46	54					0	0	0.003610	0	0
ATAD2	29028	broad.mit.edu	37	8	124384064	124384064	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:124384064G>A	uc003yqh.3	-	4	490	c.382C>T	c.(382-384)CCA>TCA	p.P128S	ATAD2_uc011lii.1_5'UTR|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.P128S	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CGAGTAACTGGAATCACTTTG	0.308													12	17					0	0	0.001368	0	0
FAM49B	51571	broad.mit.edu	37	8	130891648	130891648	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:130891648G>A	uc003yss.2	-	6	609	c.60C>T	c.(58-60)TTC>TTT	p.F20F	FAM49B_uc003yst.2_Silent_p.F20F|FAM49B_uc003ysu.2_Silent_p.F20F|FAM49B_uc003ysv.2_Intron|FAM49B_uc003ysw.2_Silent_p.F20F|FAM49B_uc003ysx.2_Silent_p.F20F|FAM49B_uc003ysy.1_Silent_p.F20F	NM_016623	NP_057707	Q9NUQ9	FA49B_HUMAN	hypothetical protein LOC51571	20											0	Ovarian(5;0.000567)|Esophageal squamous(12;0.00693)|Acute lymphoblastic leukemia(118;0.155)		LUAD - Lung adenocarcinoma(14;0.0989)			CAAAATCAAGGAAAAAATTTG	0.373													15	28					0	0	0.003163	0	0
ADCY8	114	broad.mit.edu	37	8	131812783	131812783	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:131812783C>T	uc003ytd.3	-	15	3205	c.2949G>A	c.(2947-2949)GTG>GTA	p.V983V	ADCY8_uc010mds.2_Silent_p.V852V	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	983	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGGCAAACATCACCCCAACAG	0.493										HNSCC(32;0.087)			17	47					0	0	0.007413	0	0
ADCY8	114	broad.mit.edu	37	8	131848603	131848603	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:131848603C>T	uc003ytd.3	-	12	2851	c.2595G>A	c.(2593-2595)ATG>ATA	p.M865I	ADCY8_uc010mds.2_Missense_Mutation_p.M734I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	865	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGATGGCAATCATGATCAGCA	0.547										HNSCC(32;0.087)			29	17					0	0	0.005443	0	0
ADCY8	114	broad.mit.edu	37	8	131880139	131880139	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:131880139G>A	uc003ytd.3	-	9	2419	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	721	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ATAGAAGAACGATAAATGCAC	0.348										HNSCC(32;0.087)			21	31					0	0	0.004656	0	0
TG	7038	broad.mit.edu	37	8	133894734	133894734	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:133894734G>A	uc003ytw.2	+	7	807	c.766G>A	c.(766-768)GAA>AAA	p.E256K		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	256	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GTTACTGGATGAAATTTATGA	0.468													46	147					0	0	0.003610	0	0
FLJ43860	389690	broad.mit.edu	37	8	142486223	142486223	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:142486223C>T	uc003ywi.2	-	13	1551	c.1470G>A	c.(1468-1470)TTG>TTA	p.L490L	FLJ43860_uc011ljs.1_Intron|FLJ43860_uc010meu.1_Intron	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	490							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			ACTTCCTTTCCAAGTCTATGG	0.612													3	1					0	0	0.004672	0	0
ARC	23237	broad.mit.edu	37	8	143694973	143694973	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:143694973G>A	uc003ywn.1	-	1	861	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_015193	NP_056008	Q7LC44	ARC_HUMAN	activity-regulated cytoskeleton-associated	220					endocytosis	acrosomal vesicle|cell junction|dendritic spine|endosome|postsynaptic density|postsynaptic membrane				breast(1)	1	all_cancers(97;3.55e-12)|all_epithelial(106;1.03e-08)|Lung NSC(106;0.000353)|all_lung(105;0.00092)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.0279)				GGTGGCTCAGGAACTCTCGAG	0.662													5	22					0	0	0.001168	0	0
GML	2765	broad.mit.edu	37	8	143927899	143927899	+	Silent	SNP	A	G	G			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:143927899A>G	uc003yxg.2	+	4	360	c.270A>G	c.(268-270)CCA>CCG	p.P90P		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	90	UPAR/Ly6.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CTGAAGCCCCAGGAAAAATCT	0.378													19	19					0	0	0.006122	0	0
CYP11B2	1585	broad.mit.edu	37	8	143996194	143996194	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:143996194C>T	uc003yxk.1	-	4	729	c.726G>A	c.(724-726)AGG>AGA	p.R242R		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	242					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GAGACAGGCTCCTGGGCATGA	0.607									Familial_Hyperaldosteronism_type_I				6	17					0	0	0.001168	0	0
LY6H	4062	broad.mit.edu	37	8	144239839	144239839	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:144239839A>T	uc011lka.1	-	4	417	c.251T>A	c.(250-252)TTT>TAT	p.F84Y	LY6H_uc011lkb.1_Missense_Mutation_p.F105Y|LY6H_uc003yxt.2_Missense_Mutation_p.F122Y|LY6H_uc011lkc.1_Missense_Mutation_p.F105Y	NM_002347	NP_002338	O94772	LY6H_HUMAN	lymphocyte antigen 6 complex, locus H isoform a	84	UPAR/Ly6.				nervous system development|organ morphogenesis	anchored to membrane|plasma membrane					0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GTCTGAGAAAAAGTGTCGCTT	0.547													26	55					0	0	0.007291	0	0
EPPK1	83481	broad.mit.edu	37	8	144946353	144946353	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr8:144946353G>A	uc003zaa.1	-	1	1082	c.1069C>T	c.(1069-1071)CTG>TTG	p.L357L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	357	Plectin 8.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCGGCCACCAGGAGCTGCTCA	0.657													7	12					0	0	0.001984	0	0
FOXD4	2298	broad.mit.edu	37	9	118092	118092	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:118092G>A	uc003zfz.2	-	1	326	c.28C>T	c.(28-30)CGC>TGC	p.R10C		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	10					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GGTGTGGAGCGAAGGCGCTCA	0.652													36	22					0	0	0.003610	0	0
PTPRD	5789	broad.mit.edu	37	9	8341948	8341948	+	Silent	SNP	G	A	A	rs138863975		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:8341948G>A	uc003zkk.2	-	39	5403	c.4692C>T	c.(4690-4692)ATC>ATT	p.I1564I	PTPRD_uc003zkp.2_Silent_p.I1158I|PTPRD_uc003zkq.2_Silent_p.I1157I|PTPRD_uc003zkr.2_Silent_p.I1148I|PTPRD_uc003zks.2_Silent_p.I1157I|PTPRD_uc003zkl.2_Silent_p.I1555I|PTPRD_uc003zkm.2_Silent_p.I1551I|PTPRD_uc003zkn.2_Silent_p.I1153I|PTPRD_uc003zko.2_Silent_p.I1154I	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1564	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CATCTATGACGATGAAGCAAC	0.353										TSP Lung(15;0.13)			9	13					0	0	0.004482	0	0
FREM1	158326	broad.mit.edu	37	9	14806683	14806683	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:14806683T>A	uc003zlm.2	-	18	3840	c.3250A>T	c.(3250-3252)AAA>TAA	p.K1084*	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1084	CSPG 7.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ATATTGCTTTTTTCAAAACCC	0.428													9	1					0	0	0.008291	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18777621	18777621	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:18777621C>T	uc003zne.3	+	19	3521	c.3394C>T	c.(3394-3396)CTC>TTC	p.L1132F		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1132						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CCCAGTGACTCTCTCGCCTCA	0.672													3	4					0	0	0.000602	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974684	21974684	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:21974684G>A	uc003zpk.2	-	1	355	c.143C>T	c.(142-144)CCG>CTG	p.P48L	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Missense_Mutation_p.P48L|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	48	ANK 2.		P -> L (in CMM2 and a head and neck tumor; somatic mutation).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(25)|p.P48L(9)|p.P48P(1)|p.P48R(1)|p.V28_V51del(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CACCTGGATCGGCCTCCGACC	0.677		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			134	70					0	0	0.003610	0	0
RUSC2	9853	broad.mit.edu	37	9	35555368	35555369	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:35555368_35555369CC>TT	uc003zww.2	+	3	2581_2582	c.2326_2327CC>TT	c.(2326-2328)CCC>TTC	p.P776F	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.P776F	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	776						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			TCGGCCATCGCCCCTGGGCAGC	0.663													34	32					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	9	68728848	68728848	+	RNA	SNP	A	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:68728848A>C	uc004aez.1	+	3		c.689A>C			uc004afa.1_RNA|uc010mnp.1_RNA					Homo sapiens cDNA, FLJ18209.																		aagaagaaaaagagcaaagat	0.204													9	15					0	0	0.006214	0	0
FOXD4L5	653427	broad.mit.edu	37	9	70177138	70177138	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:70177138C>T	uc010moc.2	-	1	1678	c.846G>A	c.(844-846)CCG>CCA	p.P282P		NM_001126334	NP_001119806	Q5VV16	FX4L5_HUMAN	forkhead box D4-like 5	282					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CTGCTTTCTTCGGTGCCCCGG	0.677													14	47					0	0	0.002445	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71509424	71509424	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:71509424C>T	uc004agu.2	+	8	946	c.641C>T	c.(640-642)TCC>TTC	p.S214F	PIP5K1B_uc011lrq.1_Missense_Mutation_p.S214F|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	214	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		CGAAGAGCATCCCGTAAAGAG	0.418													17	19					0	0	0.004007	0	0
FAM189A2	9413	broad.mit.edu	37	9	71986421	71986421	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:71986421C>T	uc010mon.1	+	3	123	c.19C>T	c.(19-21)CTC>TTC	p.L7F	FAM189A2_uc004ahg.2_Missense_Mutation_p.L7F	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	7						integral to membrane					0						TCAGGTAAACCTCTTTGTGCT	0.433													32	25					0	0	0.004289	0	0
TRPM6	140803	broad.mit.edu	37	9	77416879	77416879	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:77416879C>T	uc004ajl.1	-	16	2182	c.1944G>A	c.(1942-1944)ATG>ATA	p.M648I	TRPM6_uc004ajk.1_Missense_Mutation_p.M643I|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Missense_Mutation_p.M26I	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	648	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CTTCATGGGCCATTGCCCGGT	0.468													24	14					0	0	0.003954	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322954	79322954	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:79322954G>A	uc010mpk.2	-	8	4360	c.4236C>T	c.(4234-4236)TCC>TCT	p.S1412S		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1412					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GCACATCACGGGAGTCTAGAT	0.448													16	13					0	0	0.004990	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325845	79325845	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:79325845C>T	uc010mpk.2	-	8	1469	c.1345G>A	c.(1345-1347)GAC>AAC	p.D449N		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	449					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACGGGGCTGTCGTCACTGAGG	0.602													10	6					0	0	0.006214	0	0
TLE4	7091	broad.mit.edu	37	9	82336705	82336705	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:82336705G>A	uc004ald.2	+	18	2812	c.1963G>A	c.(1963-1965)GAT>AAT	p.D655N	TLE4_uc004alc.2_Missense_Mutation_p.D630N|TLE4_uc010mpr.2_Missense_Mutation_p.D509N|TLE4_uc004ale.2_Missense_Mutation_p.D267N|TLE4_uc011lsq.1_Missense_Mutation_p.D598N|TLE4_uc010mps.2_Missense_Mutation_p.D554N|TLE4_uc004alf.2_Missense_Mutation_p.D569N	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CATTTCTAATGATGGCACCAA	0.527													20	9					0	0	0.002299	0	0
DAPK1	1612	broad.mit.edu	37	9	90258300	90258300	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:90258300C>T	uc004apc.2	+	11	1066	c.928C>T	c.(928-930)CGC>TGC	p.R310C	DAPK1_uc004ape.2_Missense_Mutation_p.R310C|DAPK1_uc004apd.2_Missense_Mutation_p.R310C|DAPK1_uc011ltg.1_Missense_Mutation_p.R310C|DAPK1_uc011lth.1_Missense_Mutation_p.R47C	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	310	Calmodulin-binding.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						GCAATCCGTTCGCTTGATATC	0.428									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				13	9					0	0	0.001368	0	0
SPIN1	10927	broad.mit.edu	37	9	91090126	91090126	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:91090126C>T	uc010mqj.2	+	6	1223	c.723C>T	c.(721-723)TCC>TCT	p.S241S	SPIN1_uc004apy.2_Silent_p.S241S|SPIN1_uc004apz.2_Silent_p.S241S|SPIN1_uc010mqk.2_Silent_p.S241S	NM_006717	NP_006708	Q9Y657	SPIN1_HUMAN	spindlin	241					cell cycle|gamete generation|multicellular organismal development	nucleus	methylated histone residue binding				0						CCAAGCCCTCCGTCTATTTCA	0.413													22	17					0	0	0.003330	0	0
WNK2	65268	broad.mit.edu	37	9	96030984	96030984	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:96030984C>T	uc004ati.1	+	18	3989	c.3989C>T	c.(3988-3990)TCG>TTG	p.S1330L	WNK2_uc011lud.1_Missense_Mutation_p.S1330L|WNK2_uc004atj.2_Missense_Mutation_p.S1330L|WNK2_uc004atk.2_Missense_Mutation_p.S967L	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1330					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCTGAATCTTCGCCCCCACTT	0.617													11	6					0	0	0.003163	0	0
PTPDC1	138639	broad.mit.edu	37	9	96863937	96863937	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:96863937G>A	uc004auf.1	+	8	2281	c.1941G>A	c.(1939-1941)GTG>GTA	p.V647V	PTPDC1_uc004aug.1_Silent_p.V642V|PTPDC1_uc004auh.1_Silent_p.V699V|PTPDC1_uc010mrj.1_Silent_p.V701V	NM_177995	NP_818931	A2A3K4	PTPC1_HUMAN	protein tyrosine phosphatase domain containing 1	647							protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1						GGTCTTGGGTGGAGCAACTGA	0.463													52	21					0	0	0.003610	0	0
HSD17B3	3293	broad.mit.edu	37	9	99007662	99007662	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:99007662G>A	uc004awa.1	-	8	619	c.571C>T	c.(571-573)CCT>TCT	p.P191S	HSD17B3_uc010msc.1_Missense_Mutation_p.P191S	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	191					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	AGAGGCCAAGGAAACAGGGCT	0.468													28	28					0	0	0.003271	0	0
ALDOB	229	broad.mit.edu	37	9	104187203	104187203	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:104187203C>T	uc004bbk.2	-	8	1003	c.921G>A	c.(919-921)CAG>CAA	p.Q307Q		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	307					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GTGCACTGGCCTGCAGGGCCC	0.542													20	14					0	0	0.002299	0	0
OR13C3	138803	broad.mit.edu	37	9	107298654	107298654	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:107298654C>T	uc004bcb.1	-	1	441	c.441G>A	c.(439-441)ATG>ATA	p.M147I		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	147	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						CAAATGCCATCATGCCAAGAA	0.463													45	35					0	0	0.003214	0	0
OR13C8	138802	broad.mit.edu	37	9	107331930	107331930	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:107331930C>T	uc011lvo.1	+	1	482	c.482C>T	c.(481-483)GCT>GTT	p.A161V		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTGCAGACAGCTTTTGCAATG	0.463													34	19					0	0	0.003755	0	0
SVEP1	79987	broad.mit.edu	37	9	113276344	113276344	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:113276344C>T	uc010mtz.2	-	4	1344	c.1007G>A	c.(1006-1008)GGA>GAA	p.G336E	SVEP1_uc010mua.1_Missense_Mutation_p.G336E|SVEP1_uc004beu.2_Missense_Mutation_p.G336E|SVEP1_uc004bev.2_Missense_Mutation_p.G80E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	336					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACTGCTGATTCCTCCTGGTGA	0.522													10	3					0	0	0.001368	0	0
RGS3	5998	broad.mit.edu	37	9	116346160	116346160	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:116346160C>T	uc004bhq.2	+	21	2677	c.2468C>T	c.(2467-2469)TCC>TTC	p.S823F	RGS3_uc004bhs.2_Missense_Mutation_p.S713F|RGS3_uc004bht.2_Missense_Mutation_p.S542F|RGS3_uc010muy.2_Intron|RGS3_uc004bhv.2_Missense_Mutation_p.S144F|RGS3_uc010muz.1_Missense_Mutation_p.S162F|RGS3_uc004bhw.2_Intron|RGS3_uc011lxh.1_Missense_Mutation_p.S133F|RGS3_uc004bhx.2_Missense_Mutation_p.S144F|RGS3_uc004bhy.1_Missense_Mutation_p.S133F|RGS3_uc004bhz.2_Missense_Mutation_p.S165F	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	823					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						AGCCAGGTCTCCCTGCCAGCC	0.637													30	24					0	0	0.002445	0	0
COL27A1	85301	broad.mit.edu	37	9	117005812	117005812	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:117005812C>T	uc011lxl.1	+	23	2906	c.2906C>T	c.(2905-2907)CCT>CTT	p.P969L	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	969	Pro-rich.|Collagen-like 6.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						AAGGGGTTTCCTGGGAGGCCC	0.627													19	2					0	0	0.004656	0	0
ASTN2	23245	broad.mit.edu	37	9	119802190	119802190	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:119802190G>A	uc004bjs.1	-	6	1432	c.1331C>T	c.(1330-1332)TCC>TTC	p.S444F	ASTN2_uc004bjr.1_Missense_Mutation_p.S444F|ASTN2_uc004bjt.1_Missense_Mutation_p.S393F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	444	Helical; (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CAGGATGCAGGAACTCACAGC	0.498													15	8					0	0	0.002450	0	0
OR1J4	26219	broad.mit.edu	37	9	125281530	125281530	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:125281530C>T	uc011lyw.1	+	1	111	c.111C>T	c.(109-111)ATC>ATT	p.I37I		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTACCTGATCACGGTGCTGG	0.562													54	40					0	0	0.003610	0	0
OR1L3	26735	broad.mit.edu	37	9	125437717	125437717	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:125437717C>T	uc011lzb.1	+	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGATGTATTTCTTCCTGGTTT	0.408													64	36					0	0	0.003610	0	0
OR1K1	392392	broad.mit.edu	37	9	125562644	125562644	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:125562644G>A	uc011lze.1	+	1	243	c.243G>A	c.(241-243)AAG>AAA	p.K81K		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGTGCCCAAGATGTTGGCCA	0.577													26	21					0	0	0.006320	0	0
OR1K1	392392	broad.mit.edu	37	9	125563215	125563215	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:125563215G>A	uc011lze.1	+	1	814	c.814G>A	c.(814-816)GGC>AGC	p.G272S		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGCAGAGTGGGGCCGTGTGGC	0.597													36	28					0	0	0.005524	0	0
SLC27A4	10999	broad.mit.edu	37	9	131115732	131115732	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:131115732C>T	uc004but.2	+	9	1520	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	412					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						TCCTGTCCTTCGTGTACCCCA	0.617													46	22					0	0	0.003610	0	0
BAT2L1	84726	broad.mit.edu	37	9	134323085	134323085	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:134323085C>T	uc004can.3	+	8	1069	c.1014C>T	c.(1012-1014)CGC>CGT	p.R338R	BAT2L1_uc010mzj.1_5'UTR	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	338							protein binding				0						GCCCACTCCGCCCACTAAGGC	0.507													8	5					0	0	0.003080	0	0
GFI1B	8328	broad.mit.edu	37	9	135862155	135862155	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:135862155C>T	uc004ccg.2	+	2	241	c.90C>T	c.(88-90)GCC>GCT	p.A30A	GFI1B_uc010mzy.2_Silent_p.A30A	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	30					cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		GGCCTCCTGCCCTTACCCCGG	0.647													9	3					0	0	0.006214	0	0
FCN2	2220	broad.mit.edu	37	9	137775148	137775148	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:137775148G>A	uc004cfg.1	+	3	225	c.215G>A	c.(214-216)GGA>GAA	p.G72E	FCN2_uc004cfh.1_Missense_Mutation_p.G34E	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	72	Collagen-like.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GAAATTGCAGGAGAACGTGGC	0.587													7	16					0	0	0.001882	0	0
FCN2	2220	broad.mit.edu	37	9	137777198	137777198	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:137777198G>A	uc004cfg.1	+	5	425	c.415G>A	c.(415-417)GGA>AGA	p.G139R	FCN2_uc004cfh.1_Missense_Mutation_p.G101R	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	139	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GGACACGGACGGAGGGGGCTG	0.657													7	7					0	0	0.001984	0	0
C9orf86	55684	broad.mit.edu	37	9	139734637	139734637	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:139734637G>A	uc004cji.1	+	14	2230	c.1962G>A	c.(1960-1962)AAG>AAA	p.K654K	C9orf86_uc004cjj.1_Silent_p.K655K|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_Silent_p.K539K|C9orf86_uc004cjn.1_Silent_p.K448K	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	654	Lys-rich.				small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		CTaaggagaagaagaagaaga	0.537													12	12					0	0	0.002450	0	0
RNF208	727800	broad.mit.edu	37	9	140115218	140115218	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:140115218G>A	uc004clz.1	-	1	558	c.447C>T	c.(445-447)TCC>TCT	p.S149S		NM_031297	NP_112587	Q9H0X6	RN208_HUMAN	ring finger protein 208	149	RING-type.						zinc ion binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		TGACATTGTAGGAGTGCCCAC	0.637													17	8					0	0	0.004990	0	0
PNPLA7	375775	broad.mit.edu	37	9	140373553	140373553	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:140373553G>A	uc004cnf.2	-	23	2980	c.2643C>T	c.(2641-2643)CTC>CTT	p.L881L	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_Silent_p.L147L|PNPLA7_uc004cne.1_Silent_p.L147L|PNPLA7_uc011mfa.1_Silent_p.L289L|PNPLA7_uc010ncj.1_Silent_p.L906L	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	881					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GCGGGCAGCAGAGGTGCAGGT	0.687													6	4					0	0	0.003080	0	0
MXRA5	25878	broad.mit.edu	37	X	3241350	3241350	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:3241350C>T	uc004crg.3	-	5	2533	c.2376G>A	c.(2374-2376)GGG>GGA	p.G792G		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	792						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGAGATTTTTCCCACGGACTT	0.453													35	21					0	0	0.004878	0	0
MXRA5	25878	broad.mit.edu	37	X	3242365	3242365	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:3242365G>A	uc004crg.3	-	5	1518	c.1361C>T	c.(1360-1362)TCC>TTC	p.S454F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	454						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTGTAGTAGGAAAGTAGCAC	0.498													74	47					0	0	0.003610	0	0
PRKX	5613	broad.mit.edu	37	X	3592715	3592715	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:3592715G>A	uc010nde.2	-	2	626	c.259C>T	c.(259-261)CGC>TGC	p.R87C		NM_005044	NP_005035	P51817	PRKX_HUMAN	protein kinase, X-linked	87	Protein kinase.						ATP binding|cAMP-dependent protein kinase activity			skin(2)|lung(1)	3		all_lung(23;0.000396)|Lung NSC(23;0.00123)				TGCTTTAGGCGGATGACGTCG	0.572													43	19					0	0	0.002852	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811554	5811554	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:5811554C>T	uc010ndh.2	-	6	2256	c.1755G>A	c.(1753-1755)ACG>ACA	p.T585T	NLGN4X_uc004crp.2_Silent_p.T605T|NLGN4X_uc004crq.2_Silent_p.T585T|NLGN4X_uc010ndi.2_Silent_p.T622T|NLGN4X_uc004crr.2_Silent_p.T585T|NLGN4X_uc010ndj.2_Silent_p.T585T	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	585	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AAGCCACTTTCGTTGCCCGGT	0.463													55	32					0	0	0.003610	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821216	5821216	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:5821216C>T	uc010ndh.2	-	5	2004	c.1503G>A	c.(1501-1503)ATG>ATA	p.M501I	NLGN4X_uc004crp.2_Missense_Mutation_p.M521I|NLGN4X_uc004crq.2_Missense_Mutation_p.M501I|NLGN4X_uc010ndi.2_Missense_Mutation_p.M538I|NLGN4X_uc004crr.2_Missense_Mutation_p.M501I|NLGN4X_uc010ndj.2_Missense_Mutation_p.M501I	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	501	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TGGGACCGATCATGGGGATGC	0.532													35	13					0	0	0.004289	0	0
FAM9A	171482	broad.mit.edu	37	X	8767068	8767068	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:8767068C>T	uc004csg.2	-	3	270	c.159G>A	c.(157-159)AGG>AGA	p.R53R		NM_174951	NP_777611	Q8IZU1	FAM9A_HUMAN	family with sequence similarity 9, member A	53						nucleolus					0		Hepatocellular(5;0.219)				TGGCAGCCTTCCTGCTGCGCT	0.567													17	10					0	0	0.004007	0	0
WWC3	55841	broad.mit.edu	37	X	10092359	10092359	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:10092359C>T	uc004csx.3	+	13	2004	c.1806C>T	c.(1804-1806)CCC>CCT	p.P602P	WWC3_uc010nds.2_Silent_p.P266P|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	602										ovary(4)	4						ACGGAGATCCCCAGATCCACG	0.602													26	15					0	0	0.004656	0	0
TLR8	51311	broad.mit.edu	37	X	12939764	12939764	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:12939764G>A	uc004cve.2	+	2	2673	c.2605G>A	c.(2605-2607)GGC>AGC	p.G869S	TLR8_uc004cvd.2_Missense_Mutation_p.G887S	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	869	Cytoplasmic (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						TAAGGTAAAAGGCTACAGGTC	0.408													53	21					0	0	0.003610	0	0
BEND2	139105	broad.mit.edu	37	X	18234686	18234686	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:18234686G>A	uc004cyj.3	-	2	347	c.193C>T	c.(193-195)CCA>TCA	p.P65S	BEND2_uc010nfb.2_Missense_Mutation_p.P65S	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	65										ovary(3)|kidney(1)|central_nervous_system(1)	5						TTGCCGCCTGGAAAATTTGGT	0.413													43	16					0	0	0.003610	0	0
SCML2	10389	broad.mit.edu	37	X	18342046	18342046	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:18342046G>A	uc004cyl.2	-	5	487	c.330C>T	c.(328-330)GTC>GTT	p.V110V	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Silent_p.V110V|SCML2_uc011miz.1_Silent_p.V44V	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	110	MBT 1.				anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					CTGGGGAATCGACAAGCCTCC	0.418													36	16					0	0	0.008740	0	0
ZNF645	158506	broad.mit.edu	37	X	22291889	22291889	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:22291889C>T	uc004dai.1	+	1	830	c.781C>T	c.(781-783)CCT>TCT	p.P261S		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	261	Pro-rich.					intracellular	zinc ion binding			lung(1)|pancreas(1)	2						CGACTATTATCCTGAGTGTCA	0.418													65	34					0	0	0.003610	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157386	26157386	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:26157386C>T	uc004dbq.1	+	2	471	c.284C>T	c.(283-285)TCC>TTC	p.S95F		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	95							protein binding			central_nervous_system(1)	1						AGTCTAGGTTCCTCAAGGGAA	0.468													13	13					0	0	0.004007	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999268	27999268	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:27999268C>T	uc004dbx.1	-	1	299	c.184G>A	c.(184-186)GAT>AAT	p.D62N		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	62										ovary(3)|skin(1)	4						GTGCTGGCATCGTTCAGGAAA	0.507													36	21					0	0	0.002836	0	0
USP9X	8239	broad.mit.edu	37	X	41069821	41069821	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:41069821C>T	uc004dfb.2	+	33	5708	c.5075C>T	c.(5074-5076)TCA>TTA	p.S1692L	USP9X_uc004dfc.2_Missense_Mutation_p.S1692L	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1692					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TTTTTTAATTCATTGGTGGAT	0.363													32	16					0	0	0.004289	0	0
CLCN5	1184	broad.mit.edu	37	X	49855127	49855127	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:49855127G>A	uc004dos.1	+	10	2137	c.1889G>A	c.(1888-1890)AGA>AAA	p.R630K	CLCN5_uc004dor.1_Missense_Mutation_p.R700K|CLCN5_uc004doq.1_Missense_Mutation_p.R700K|CLCN5_uc004dot.1_Missense_Mutation_p.R630K	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	630	CBS 1.|Cytoplasmic (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					GAGTCCCAAAGACTTGTGGGC	0.453													7	8					0	0	0.003080	0	0
DGKK	139189	broad.mit.edu	37	X	50134557	50134557	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:50134557G>A	uc010njr.1	-	11	1782	c.1722C>T	c.(1720-1722)ATC>ATT	p.I574I		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	574	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TTCCAAGTGGGATGACTGCCA	0.512													24	11					0	0	0.004656	0	0
PHF8	23133	broad.mit.edu	37	X	53965627	53965627	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:53965627G>A	uc004dsu.2	-	22	3220	c.3147C>T	c.(3145-3147)ATC>ATT	p.I1049I	PHF8_uc004dst.2_Silent_p.I1013I|PHF8_uc004dsv.2_Silent_p.I879I|PHF8_uc004dsw.2_Silent_p.I912I	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	1049					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						GGATTTTCAGGATACGGCCGA	0.542													36	22					0	0	0.006230	0	0
MSN	4478	broad.mit.edu	37	X	64955140	64955140	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:64955140C>T	uc004dwf.2	+	8	1005	c.807C>T	c.(805-807)TTC>TTT	p.F269F		NM_002444	NP_002435	P26038	MOES_HUMAN	moesin	269	FERM.				leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking	apical plasma membrane|cytoskeleton|extrinsic to membrane|microvillus membrane|nucleolus	cell adhesion molecule binding|receptor binding|structural constituent of cytoskeleton		MSN/ALK(6)	haematopoietic_and_lymphoid_tissue(6)|ovary(3)|lung(1)	10						ACTTCGTCTTCTATGCTCCCC	0.478			T	ALK	ALCL								9	3					0	0	0.006214	0	0
HEPH	9843	broad.mit.edu	37	X	65392390	65392390	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:65392390C>T	uc011moz.1	+	3	430	c.370C>T	c.(370-372)CGT>TGT	p.R124C	HEPH_uc004dwn.2_Missense_Mutation_p.R124C|HEPH_uc004dwo.2_5'UTR|HEPH_uc010nkr.2_Missense_Mutation_p.R124C|HEPH_uc011mpa.1_Missense_Mutation_p.R124C	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	121	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TTTTGCCACTCGTCCCTATAC	0.507													39	26					0	0	0.007835	0	0
HEPH	9843	broad.mit.edu	37	X	65486329	65486329	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:65486329A>T	uc011moz.1	+	21	3361	c.3301A>T	c.(3301-3303)ATG>TTG	p.M1101L	HEPH_uc004dwn.2_Missense_Mutation_p.M1100L|HEPH_uc004dwo.2_Missense_Mutation_p.M831L|HEPH_uc010nkr.2_Missense_Mutation_p.M909L|HEPH_uc011mpa.1_Missense_Mutation_p.M1101L	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	1098	Extracellular (Potential).				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						GATGCTGGGCATGCAGATCCC	0.483													31	16					0	0	0.003271	0	0
KIF4A	24137	broad.mit.edu	37	X	69626151	69626151	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:69626151C>T	uc004dyg.2	+	27	3146	c.3019C>T	c.(3019-3021)CCT>TCT	p.P1007S	KIF4A_uc010nkw.2_Missense_Mutation_p.P1007S	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	1007	Globular.|Interaction with PRC1.			QKHLPKDTLLSP -> RTLPRIPFYLQ (in Ref. 8; AAF86334).	anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						GAAACATCTTCCTAAGGATAC	0.438													18	9					0	0	0.001523	0	0
TEX11	56159	broad.mit.edu	37	X	69826839	69826839	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:69826839C>T	uc004dyl.2	-	24	2127	c.1965G>A	c.(1963-1965)ATG>ATA	p.M655I	TEX11_uc004dyk.2_Missense_Mutation_p.M330I|TEX11_uc004dym.2_Missense_Mutation_p.M640I	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	655							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					ACTCTCTCATCATCACTGGAT	0.308													11	13					0	0	0.001855	0	0
MED12	9968	broad.mit.edu	37	X	70356750	70356750	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:70356750C>T	uc004dyy.2	+	38	5621	c.5422C>T	c.(5422-5424)CGG>TGG	p.R1808W	MED12_uc011mpq.1_Missense_Mutation_p.R1808W|MED12_uc004dyz.2_Missense_Mutation_p.R1808W|MED12_uc004dza.2_Missense_Mutation_p.R1655W|MED12_uc010nla.2_Missense_Mutation_p.R434W	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1808	Interaction with CTNNB1 and GLI3.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					GGGCCCGGGTCGGAGCGGCCC	0.577													15	10					0	0	0.003163	0	0
OGT	8473	broad.mit.edu	37	X	70782856	70782856	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:70782856C>T	uc004eaa.1	+	16	2354	c.2137C>T	c.(2137-2139)CCT>TCT	p.P713S	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.P703S|OGT_uc004eac.2_Missense_Mutation_p.P574S|OGT_uc004ead.2_Missense_Mutation_p.P332S	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	713					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					TAATATGTTCCCTCACCTGAA	0.388													28	15					0	0	0.001786	0	0
HDAC8	55869	broad.mit.edu	37	X	71787749	71787749	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:71787749G>A	uc004eau.2	-	4	469	c.427C>T	c.(427-429)CAT>TAT	p.H143Y	HDAC8_uc011mqe.1_5'UTR|HDAC8_uc011mqf.1_Intron|HDAC8_uc011mqg.1_Intron|HDAC8_uc011mqh.1_Intron|HDAC8_uc010nlk.1_Missense_Mutation_p.H14Y|HDAC8_uc004eav.2_Missense_Mutation_p.H143Y|HDAC8_uc004eaw.2_RNA	NM_018486	NP_060956	Q9BY41	HDAC8_HUMAN	histone deacetylase 8	143	Histone deacetylase.	Proton acceptor.		HH->AA: Strongly reduces histone deacetylase activity.|H->A: Loss of catalytical activity.	chromatin assembly or disassembly|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|nuclear chromosome	histone deacetylase activity (H3-K16 specific)|metal ion binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding				0	Renal(35;0.156)				Vorinostat(DB02546)	TTCTTTGCATGATGCCACCCT	0.418													38	18					0	0	0.006999	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433365	72433365	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:72433365C>T	uc004ebi.2	-	1	1320	c.964G>A	c.(964-966)GGA>AGA	p.G322R	NAP1L2_uc011mqj.1_Missense_Mutation_p.G180R	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	322					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					ATCGCAGTTCCCCTATAGGGA	0.383													50	34					0	0	0.003610	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960801	73960801	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:73960801C>T	uc004eby.2	-	3	4208	c.3591G>A	c.(3589-3591)AGG>AGA	p.R1197R		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1197					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GGGATTTTTTCCTGGTGTTTT	0.428													34	19					0	0	0.002445	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962828	73962828	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:73962828C>T	uc004eby.2	-	3	2181	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	522					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GGACACCATTCATCATCATCT	0.388													12	1					0	0	0.001368	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528442	77528442	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:77528442C>T	uc004edb.2	-	3	1202	c.802G>A	c.(802-804)GAT>AAT	p.D268N	CYSLTR1_uc010nma.2_Missense_Mutation_p.D268N|CYSLTR1_uc010nmb.2_Missense_Mutation_p.D268N	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	268	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	AGGACAGAATCACAGGGTTTA	0.418													27	10					0	0	0.004656	0	0
NAP1L3	4675	broad.mit.edu	37	X	92928074	92928074	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:92928074T>C	uc004efq.2	-	1	535	c.230A>G	c.(229-231)AAG>AGG	p.K77R	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	77					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						TACCCTCTTCTTTCTATACAA	0.318													4	16					0	0	0.001168	0	0
NOX1	27035	broad.mit.edu	37	X	100104846	100104846	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:100104846C>A	uc004egj.2	-	10	1417	c.1211G>T	c.(1210-1212)GGA>GTA	p.G404V	NOX1_uc004egl.3_Missense_Mutation_p.G404V|NOX1_uc010nne.2_Missense_Mutation_p.G367V	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	404	Interaction with NOXO1.|Helical; (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						GACCCCAATTCCTGCTCCAAC	0.463													21	5					8.10497e-08	1.11411e-07	0.001523	1	0
NOX1	27035	broad.mit.edu	37	X	100125714	100125714	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:100125714G>A	uc004egj.2	-	2	341	c.135C>T	c.(133-135)ATC>ATT	p.I45I	uc010nnf.2_Intron|NOX1_uc004egl.3_Silent_p.I45I|NOX1_uc010nne.2_Silent_p.I45I	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	45	Helical; (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						TCACCCCAAGGATTTTTCTTG	0.418													47	35					0	0	0.003610	0	0
BTK	695	broad.mit.edu	37	X	100625005	100625005	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:100625005C>T	uc004ehg.2	-	5	565	c.372G>A	c.(370-372)TGG>TGA	p.W124*	BTK_uc010nnn.2_Nonsense_Mutation_p.W124*|BTK_uc010nno.2_Nonsense_Mutation_p.W158*|BTK_uc004ehi.2_Nonsense_Mutation_p.W124*	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	124	PH.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						GCTGGTGAATCCACCGCTTCC	0.338									Agammaglobulinemia_X-linked				55	23					0	0	0.003610	0	0
MORC4	79710	broad.mit.edu	37	X	106185956	106185956	+	Missense_Mutation	SNP	C	G	G	rs149926328		TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:106185956C>G	uc004emu.3	-	15	2408	c.2165G>C	c.(2164-2166)CGA>CCA	p.R722P	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.R722P|MORC4_uc004emw.3_Missense_Mutation_p.R470P	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	722							ATP binding|zinc ion binding			ovary(1)	1						AACTGCTTTTCGTCTCTCAGC	0.512													41	26					0	0	0.006999	0	0
TEX13B	56156	broad.mit.edu	37	X	107224934	107224934	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:107224934C>T	uc004enn.1	-	2	517	c.424G>A	c.(424-426)GAG>AAG	p.E142K		NM_031273	NP_112563	Q9BXU2	TX13B_HUMAN	testis expressed 13B	142										ovary(1)	1						ATGTCCCGCTCTCTCTGCACC	0.587													25	17					0	0	0.003954	0	0
ATG4A	115201	broad.mit.edu	37	X	107377369	107377369	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:107377369C>T	uc004enr.2	+	5	498	c.375C>T	c.(373-375)TGC>TGT	p.C125C	ATG4A_uc004ent.2_Silent_p.C125C|ATG4A_uc004ens.2_Silent_p.C41C|ATG4A_uc011msl.1_Silent_p.C41C|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Silent_p.C41C	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	125					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						AAGATTGTTGCTACTCTATCC	0.373													17	10					0	0	0.007413	0	0
HTR2C	3358	broad.mit.edu	37	X	114141243	114141243	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:114141243C>T	uc004epu.1	+	6	1370	c.642C>T	c.(640-642)TTC>TTT	p.F214F	HTR2C_uc010nqc.1_Silent_p.F214F|HTR2C_uc004epv.1_Missense_Mutation_p.R183C	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	214	Helical; Name=5; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ACCCAAATTTCGTTCTTATTG	0.468													119	77					0	0	0.003610	0	0
ODZ1	10178	broad.mit.edu	37	X	123778993	123778993	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:123778993C>A	uc004euj.2	-	10	1940	c.1876G>T	c.(1876-1878)GAG>TAG	p.E626*	ODZ1_uc011muj.1_Nonsense_Mutation_p.E625*|ODZ1_uc010nqy.2_Nonsense_Mutation_p.E626*	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	626	EGF-like 4.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGATTCTGACCTTCCTCGCAT	0.463													26	20					7.92952e-12	1.09402e-11	0.003954	1	0
DCAF12L2	340578	broad.mit.edu	37	X	125298562	125298562	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:125298562G>A	uc004euk.1	-	1	1373	c.1346C>T	c.(1345-1347)CCT>CTT	p.P449L		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	449										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						TGAAGGGAGAGGCCCCCCAGC	0.562													35	20					0	0	0.003271	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185461	127185461	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:127185461C>T	uc004eum.2	-	1	922	c.725G>A	c.(724-726)AGA>AAA	p.R242K		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	242						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						ATCTGGCAGTCTGTATGCTCC	0.542													52	34					0	0	0.003610	0	0
USP26	83844	broad.mit.edu	37	X	132160170	132160170	+	Silent	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:132160170G>A	uc010nrm.1	-	6	2549	c.2079C>T	c.(2077-2079)CCC>CCT	p.P693P	USP26_uc011mvf.1_Silent_p.P693P	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	693					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TTGGATTTTCGGGCACTGTTT	0.383													31	19					0	0	0.001786	0	0
USP26	83844	broad.mit.edu	37	X	132160571	132160571	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:132160571G>A	uc010nrm.1	-	6	2148	c.1678C>T	c.(1678-1680)CCC>TCC	p.P560S	USP26_uc011mvf.1_Missense_Mutation_p.P560S	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	560					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TCACTCAAGGGAAGAGGTGGT	0.378													26	20					0	0	0.003330	0	0
GPR112	139378	broad.mit.edu	37	X	135428725	135428725	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:135428725C>T	uc004ezu.1	+	6	3151	c.2860C>T	c.(2860-2862)CCC>TCC	p.P954S	GPR112_uc010nsb.1_Missense_Mutation_p.P749S|GPR112_uc010nsc.1_Missense_Mutation_p.P721S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	954	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGCTGGATCTCCCACTTCTGG	0.443													82	39					0	0	0.003610	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135757223	135757223	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:135757223G>A	uc004fab.2	-	19	2440	c.1978C>T	c.(1978-1980)CTT>TTT	p.L660F	ARHGEF6_uc011mwd.1_Missense_Mutation_p.L533F|ARHGEF6_uc011mwe.1_Missense_Mutation_p.L506F	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	660					apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					ATCACTTTAAGGATTTGAGCA	0.423													23	19					0	0	0.004656	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596644	142596644	+	Silent	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:142596644C>T	uc004fbw.2	-	2	514	c.426G>A	c.(424-426)TAG>TAA	p.*142*		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	142										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCATGTGTGACTAATCCTCCC	0.433													35	19					0	0	0.003755	0	0
FMR1	2332	broad.mit.edu	37	X	147019652	147019652	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:147019652C>T	uc010nst.2	+	12	1349	c.1160C>T	c.(1159-1161)TCC>TTC	p.S387F	FMR1_uc004fcj.2_Intron|FMR1_uc004fck.3_Intron|FMR1_uc004fcl.3_Intron|FMR1_uc011mxa.1_Intron	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	387					mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGGGGAATCCCAGAAACCT	0.383									Fragile_X_syndrome				65	39					0	0	0.003610	0	0
GPR50	9248	broad.mit.edu	37	X	150349224	150349224	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:150349224C>T	uc010ntg.1	+	2	1304	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F	uc004fes.1_5'Flank	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	390	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AAGCCCCATTCCAGATCCTCC	0.582													31	17					0	0	0.002096	0	0
GABRE	2564	broad.mit.edu	37	X	151123221	151123221	+	Silent	SNP	A	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:151123221A>T	uc004ffi.2	-	9	1527	c.1473T>A	c.(1471-1473)ACT>ACA	p.T491T	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	491	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGAAGAAGAAAGTCACTGGGA	0.542													14	10					0	0	0.002450	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870035	151870036	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:151870035_151870036CC>TT	uc004ffq.1	+	3	919_920	c.725_726CC>TT	c.(724-726)CCC>CTT	p.P242L	MAGEA6_uc004ffr.1_Missense_Mutation_p.P242L|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	242	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					TTCGGGGATCCCAAGAAGCTGC	0.545													75	48					0	0	0.004672	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935886	151935886	+	Missense_Mutation	SNP	C	T	T	rs145513270	byFrequency	TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:151935886C>T	uc004fgp.2	-	3	490	c.281G>A	c.(280-282)GGG>GAG	p.G94E		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	94											0	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGCTTGGCCCCTCCTCTTC	0.577													25	23					0	0	0.008361	0	0
FLNA	2316	broad.mit.edu	37	X	153589684	153589684	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:153589684G>A	uc004fkk.2	-	21	3448	c.3199C>T	c.(3199-3201)CCT>TCT	p.P1067S	FLNA_uc011mzn.1_5'Flank|FLNA_uc010nuu.1_Missense_Mutation_p.P1067S	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1067	Filamin 9.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACCTTGCTAGGCTTGGTGGGG	0.612													24	15					0	0	0.004656	0	0
F8	2157	broad.mit.edu	37	X	154158550	154158550	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chrX:154158550C>T	uc004fmt.2	-	14	3686	c.3515G>A	c.(3514-3516)GGA>GAA	p.G1172E		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1172	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTCACCCTTTCCTACTACCAC	0.383													27	34					0	0	0.007291	0	0
MRPL20	55052	broad.mit.edu	37	1	1337486	1337486	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr1:1337486delA	uc001afo.3	-	4	523	c.427delT	c.(427-429)TCCfs	p.S143fs	CCNL2_uc001afh.2_5'Flank|CCNL2_uc001afj.2_5'Flank|CCNL2_uc001afk.2_5'Flank|CCNL2_uc001afi.2_5'Flank|LOC148413_uc001afn.1_RNA	NM_017971	NP_060441	Q9BYC9	RM20_HUMAN	mitochondrial ribosomal protein L20 precursor	143							protein binding|rRNA binding				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		ACCACTCTGGAAAAAATGCCT	0.443													7	195	---	---	---	---					
MYOF	26509	broad.mit.edu	37	10	95083038	95083038	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr10:95083038delC	uc001kin.2	-	47	5472	c.5349delG	c.(5347-5349)CGGfs	p.R1783fs	MYOF_uc001kio.2_Frame_Shift_Del_p.R1770fs|MYOF_uc009xue.2_Intron	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1783	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TCTTGGCTTTCCGGGGTGTGA	0.478													43	69	---	---	---	---					
ARID4A	5926	broad.mit.edu	37	14	58833673	58833673	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr14:58833673delA	uc001xdp.2	+	23	3850	c.3596delA	c.(3595-3597)TATfs	p.Y1199fs	ARID4A_uc001xdo.2_Frame_Shift_Del_p.Y1145fs|ARID4A_uc001xdq.2_Frame_Shift_Del_p.Y1130fs	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	1199				IRKYYM -> SENIICL (in Ref. 4; no nucleotide entry).	negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						ATCAGAAAATATTATATGTCT	0.323													37	20	---	---	---	---					
ZFP36L2	678	broad.mit.edu	37	2	43452413	43452426	+	Frame_Shift_Del	DEL	GCGAACTGGCACTT	-	-			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr2:43452413_43452426delGCGAACTGGCACTT	uc002rsv.3	-	2	808_821	c.517_530delAAGTGCCAGTTCGC	c.(517-531)AAGTGCCAGTTCGCGfs	p.K173fs	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	173_177	RNA-binding.|C3H1-type 1.				cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				GAAGCCATGCGCGAACTGGCACTTTTCGCCGTAC	0.640													9	22	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69634667	69634668	+	RNA	INS	-	GA	GA			TCGA-DA-A1HV-06A-21D-A196-08	TCGA-DA-A1HV-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75ba6722-1148-4a52-a9ed-68d890238205	02fb5e42-5dcc-44ba-97c3-1be1ba423680	g.chr9:69634667_69634668insGA	uc004afu.3	-	3		c.403_404insTC								Homo sapiens aquaporin 7 pseudogene 2, mRNA (cDNA clone IMAGE:30406582).																		AAGATGCGGGGGGGGCAGGTCC	0.569													16	85	---	---	---	---					
