Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	861336	861336	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:861336C>T	uc001abw.1	+	2	95	c.15C>T	c.(13-15)ATC>ATT	p.I5I	SAMD11_uc001abv.1_Silent_p.I5I	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	5						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CCAAGGGGATCCTGCAGGTGC	0.647													44	49					0	0	0.048971	0	0
PLEKHN1	84069	broad.mit.edu	37	1	908974	908974	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:908974C>T	uc001ace.2	+	12	1579	c.1544C>T	c.(1543-1545)CCC>CTC	p.P515L	PLEKHN1_uc001acd.2_Missense_Mutation_p.P463L|PLEKHN1_uc001acf.2_Missense_Mutation_p.P428L	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	515											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		TACACACCACCCGCCACCTCC	0.657													57	52					0	0	0.048971	0	0
TNFRSF18	8784	broad.mit.edu	37	1	1139545	1139545	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:1139545G>A	uc001adc.2	-	4	608	c.470C>T	c.(469-471)TCC>TTC	p.S157F	TNFRSF18_uc001ada.2_Missense_Mutation_p.S85F|TNFRSF18_uc001adb.2_Missense_Mutation_p.S157F|TNFRSF18_uc001add.2_Intron	NM_004195	NP_004186	Q9Y5U5	TNR18_HUMAN	tumor necrosis factor receptor superfamily,	157	Extracellular (Potential).				anti-apoptosis|apoptosis	extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGCCGGCGGGGACCCTGGGAC	0.652													17	12					0	0	0.043863	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939042	2939042	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:2939042C>T	uc001ajz.2	+	1	997	c.792C>T	c.(790-792)TTC>TTT	p.F264F		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	264						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		AGGCCCTGTTCGTGCCCCAGC	0.642													56	58					0	0	0.048971	0	0
TAS1R1	80835	broad.mit.edu	37	1	6635452	6635453	+	Splice_Site	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:6635452_6635453GG>AA	uc001ant.2	+	3	1260	c.1260_splice	c.e3+1	p.Q420_splice	TAS1R1_uc001anu.2_Intron|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_Splice_Site_p.Q420_splice	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b						sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		ACCCCTGGCAGGTAAGAGAGCC	0.609													6	43					0	0	0.004672	0	0
EXOSC10	5394	broad.mit.edu	37	1	11151116	11151116	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:11151116G>A	uc001asa.2	-	5	648	c.598C>T	c.(598-600)CCT>TCT	p.P200S	EXOSC10_uc001asb.2_Missense_Mutation_p.P200S|EXOSC10_uc009vmy.1_Missense_Mutation_p.P200S	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	200					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		AAGATTTTAGGAAGAAATGGT	0.393													52	94					0	0	0.048971	0	0
TNFRSF8	943	broad.mit.edu	37	1	12186103	12186103	+	Missense_Mutation	SNP	C	T	T	rs140319459		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:12186103C>T	uc001atq.2	+	11	1471	c.1249C>T	c.(1249-1251)CGG>TGG	p.R417W	TNFRSF8_uc010obc.1_Missense_Mutation_p.R306W|TNFRSF8_uc001atr.2_5'UTR|TNFRSF8_uc001ats.2_5'UTR	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	417	Cytoplasmic (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGCGAATTCGGCAGAGTAA	0.632													27	91					0	0	0.091800	0	0
AADACL4	343066	broad.mit.edu	37	1	12704715	12704715	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:12704715C>T	uc001auf.2	+	1	150	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	50	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		ATTGCATATTCCTCTACCTGG	0.507													41	117					0	0	0.111260	0	0
AGMAT	79814	broad.mit.edu	37	1	15909809	15909809	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:15909809G>A	uc001awv.1	-	2	497	c.354C>T	c.(352-354)TCC>TCT	p.S118S	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	118					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		CAACCATGAGGGACTGGAAGG	0.527													32	24					0	0	0.045705	0	0
MST1P9	11223	broad.mit.edu	37	1	17085780	17085780	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:17085780G>A	uc010ock.1	-	8	1041	c.1041C>T	c.(1039-1041)GAC>GAT	p.D347D	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Translation_Start_Site	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GCCGCACGTCGTCTGTACAAC	0.692													4	25					0	0	0.009096	0	0
MST1P9	11223	broad.mit.edu	37	1	17087530	17087530	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:17087530C>T	uc010ock.1	-	2	135	c.135G>A	c.(133-135)GCG>GCA	p.A45A	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'Flank	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CGGGCACCACCGCATGTAGCA	0.632													22	77					0	0	0.083992	0	0
PADI2	11240	broad.mit.edu	37	1	17395735	17395735	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:17395735G>A	uc001baf.2	-	16	1884	c.1802C>T	c.(1801-1803)CCC>CTC	p.P601L	PADI2_uc010ocm.1_Missense_Mutation_p.P485L	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	601					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	GAATGGCTTGGGGATGCCCAG	0.517													42	32					0	0	0.039052	0	0
PADI3	51702	broad.mit.edu	37	1	17599902	17599902	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:17599902G>A	uc001bai.2	+	10	1155	c.1115G>A	c.(1114-1116)AGG>AAG	p.R372K		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	372					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GACTCCCCAAGGAATGGGGAA	0.612													29	30					0	0	0.045705	0	0
IGSF21	84966	broad.mit.edu	37	1	18618377	18618377	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:18618377C>T	uc001bau.1	+	3	584	c.201C>T	c.(199-201)ACC>ACT	p.T67T		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	67	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		ATGGTGGCACCATCAAGCAAA	0.532													38	96					0	0	0.080422	0	0
TAS1R2	80834	broad.mit.edu	37	1	19184014	19184014	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:19184014G>A	uc001bba.1	-	2	295	c.294C>T	c.(292-294)ATC>ATT	p.I98I		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	98	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	ACACATCCACGATCTCATAGC	0.542													58	48					0	0	0.048971	0	0
AKR7A3	22977	broad.mit.edu	37	1	19609267	19609268	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:19609267_19609268GG>AA	uc001bbv.1	-	7	1030_1031	c.953_954CC>TT	c.(952-954)GCC>GTT	p.A318V		NM_012067	NP_036199	O95154	ARK73_HUMAN	aldo-keto reductase family 7, member A3	318					cellular aldehyde metabolic process	cytosol	aldo-keto reductase (NADP) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;1.78e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|GBM - Glioblastoma multiforme(114;0.00276)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCAAATGCCAGGCTTGATTAAA	0.554													18	41					0	0	0.004672	0	0
HP1BP3	50809	broad.mit.edu	37	1	21100054	21100054	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:21100054G>A	uc001bdw.1	-	5	540	c.400C>T	c.(400-402)CCT>TCT	p.P134S	HP1BP3_uc001bdv.1_Missense_Mutation_p.P96S|HP1BP3_uc010odh.1_Missense_Mutation_p.P96S|HP1BP3_uc001bdy.1_Missense_Mutation_p.P134S|HP1BP3_uc001bdz.2_RNA|HP1BP3_uc001bea.2_Missense_Mutation_p.P133S|HP1BP3_uc010odg.1_5'UTR	NM_016287	NP_057371	Q5SSJ5	HP1B3_HUMAN	HP1-BP74	134					nucleosome assembly	nucleosome|nucleus	DNA binding			central_nervous_system(1)|skin(1)	2		all_lung(284;6.55e-06)|Lung NSC(340;6.59e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.26e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00015)|GBM - Glioblastoma multiforme(114;0.000521)|Kidney(64;0.000529)|STAD - Stomach adenocarcinoma(196;0.00311)|KIRC - Kidney renal clear cell carcinoma(64;0.00687)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.201)		GCCCAGGAAGGAATTGTTTTT	0.418													9	24					0	0	0.047766	0	0
ECE1	1889	broad.mit.edu	37	1	21551745	21551745	+	Missense_Mutation	SNP	G	A	A	rs144860890	byFrequency	TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:21551745G>A	uc001bek.2	-	17	2113	c.2038C>T	c.(2038-2040)CGG>TGG	p.R680W	ECE1_uc001bem.2_Missense_Mutation_p.R664W|ECE1_uc001bej.2_Missense_Mutation_p.R668W|ECE1_uc001bei.2_Missense_Mutation_p.R677W|ECE1_uc010odl.1_Missense_Mutation_p.R680W	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	680	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		GCTCTCACCCGATAGGCCGCC	0.657													45	30					0	0	0.048971	0	0
C1QA	712	broad.mit.edu	37	1	22965376	22965376	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:22965376G>A	uc001bfy.2	+	3	299	c.214G>A	c.(214-216)GAA>AAA	p.E72K	C1QA_uc001bfz.2_Missense_Mutation_p.E72K	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	72	Collagen-like.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGACCAGGGGGAACCTGGGCC	0.642													11	9					0	0	0.080935	0	0
C1orf172	126695	broad.mit.edu	37	1	27278629	27278629	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:27278629C>T	uc001bni.1	-	2	332	c.243G>A	c.(241-243)TGG>TGA	p.W81*		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695	81	Cys-rich.									large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		ACTCCCACACCCAGGGTCGCC	0.672													12	31					0	0	0.093190	0	0
WASF2	10163	broad.mit.edu	37	1	27736451	27736451	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:27736451G>A	uc001bof.1	-	8	1290	c.1074C>T	c.(1072-1074)CAC>CAT	p.H358H	WASF2_uc010ofl.1_Intron	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	358					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		CAAAATCAGGGTGAGGTGGGA	0.607													32	86					0	0	0.080422	0	0
WASF2	10163	broad.mit.edu	37	1	27739102	27739102	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:27739102G>A	uc001bof.1	-	7	1004	c.788C>T	c.(787-789)TCC>TTC	p.S263F	WASF2_uc010ofl.1_Missense_Mutation_p.S263F	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	263					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		GTTGTCCTCGGAGAAGGAAGG	0.468													19	89					0	0	0.055883	0	0
PUM1	9698	broad.mit.edu	37	1	31447636	31447636	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:31447636G>A	uc001bsi.1	-	10	1481	c.1368C>T	c.(1366-1368)GTC>GTT	p.V456V	PUM1_uc001bsf.1_Silent_p.V122V|PUM1_uc001bsg.1_Silent_p.V269V|PUM1_uc001bsh.1_Silent_p.V456V|PUM1_uc001bsj.1_Silent_p.V457V|PUM1_uc010oga.1_Silent_p.V360V|PUM1_uc001bsk.1_Silent_p.V492V|PUM1_uc010ogb.1_Silent_p.V397V	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	456	Ala-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		ACTGGTGAGGGACCACAGCTG	0.473													10	26					0	0	0.080935	0	0
SNRNP40	9410	broad.mit.edu	37	1	31754332	31754332	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:31754332G>A	uc001bso.2	-	5	589	c.543C>T	c.(541-543)ATC>ATT	p.I181I	SNRNP40_uc010oge.1_Silent_p.I181I	NM_004814	NP_004805	Q96DI7	SNR40_HUMAN	WD repeat domain 57 (U5 snRNP specific)	181	WD 3.					catalytic step 2 spliceosome|cytoplasm|nucleoplasm|small nucleolar ribonucleoprotein complex|U5 snRNP	protein binding				0						CTTTCTTCCGGATGTCCCAAA	0.423													6	20					0	0	0.029380	0	0
ZBTB8A	653121	broad.mit.edu	37	1	33065969	33065969	+	Silent	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:33065969T>C	uc001bvn.2	+	5	1760	c.1275T>C	c.(1273-1275)GTT>GTC	p.V425V	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_3'UTR|ZBTB8OS_uc001bvo.1_Intron	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	425					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCCAACAGGTTGATGATAGTG	0.403													36	19					0	0	0.086207	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33945117	33945117	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:33945117C>T	uc001bxj.3	+	2	395	c.228C>T	c.(226-228)TGC>TGT	p.C76C	ZSCAN20_uc001bxk.2_Silent_p.C76C|ZSCAN20_uc009vui.2_Silent_p.C76C	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	76	SCAN box.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGGCTCTCTGCTGTCGTTGGC	0.612													18	43					0	0	0.038395	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960705	33960705	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:33960705C>T	uc001bxj.3	+	8	2928	c.2761C>T	c.(2761-2763)CAC>TAC	p.H921Y	ZSCAN20_uc009vui.2_Missense_Mutation_p.H920Y	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	921	C2H2-type 6.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCTGGCCAACCACCAGCGCAC	0.522													20	77					0	0	0.055883	0	0
C1orf94	84970	broad.mit.edu	37	1	34666393	34666393	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:34666393G>A	uc001bxs.3	+	3	859	c.460G>A	c.(460-462)GAG>AAG	p.E154K	C1orf94_uc001bxt.2_Missense_Mutation_p.E344K	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	154							protein binding				0		Myeloproliferative disorder(586;0.0393)				TGGCACCAAGGAGCCAAAAAA	0.562													24	83					0	0	0.091800	0	0
GJB4	127534	broad.mit.edu	37	1	35227594	35227594	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:35227594G>A	uc001bxv.1	+	2	1109	c.739G>A	c.(739-741)GAT>AAT	p.D247N	GJB4_uc001bxw.3_Missense_Mutation_p.D247N	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	247	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				GCACCCTGAGGATGGGAACTC	0.617													25	25					0	0	0.083992	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370111	35370111	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:35370111G>A	uc001byc.2	-	1	874	c.874C>T	c.(874-876)CCA>TCA	p.P292S		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	292					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GACCCATCTGGACCCTCCAGG	0.647													26	85					0	0	0.030593	0	0
CLSPN	63967	broad.mit.edu	37	1	36209113	36209113	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:36209113C>T	uc001bzi.2	-	17	3065	c.2985G>A	c.(2983-2985)GAG>GAA	p.E995E	CLSPN_uc009vux.2_Silent_p.E931E	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	995					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CAAATTCCTCCTCCTCGTCTT	0.343													25	67					0	0	0.099896	0	0
HIVEP3	59269	broad.mit.edu	37	1	42041341	42041341	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:42041341A>G	uc001cgz.3	-	5	6294	c.5081T>C	c.(5080-5082)GTT>GCT	p.V1694A	HIVEP3_uc001cha.3_Missense_Mutation_p.V1694A|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1694					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TTCCGGGGAAACCAGTGAAGG	0.542													21	67					0	0	0.062417	0	0
WDR65	149465	broad.mit.edu	37	1	43649360	43649360	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:43649360C>T	uc001cip.1	+	4	694	c.573C>T	c.(571-573)AGC>AGT	p.S191S	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Silent_p.S180S|WDR65_uc001ciq.1_Silent_p.S191S	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	191										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGCAAACCAGCTTTCAGAGGG	0.488													30	81					0	0	0.041601	0	0
KIAA0467	23334	broad.mit.edu	37	1	43896198	43896198	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:43896198G>A	uc001cjk.1	+	17	2277	c.1815G>A	c.(1813-1815)GAG>GAA	p.E605E		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1504						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGGTCACTGAGAGTGACCCAG	0.557													22	75					0	0	0.076483	0	0
RNF220	55182	broad.mit.edu	37	1	44878033	44878033	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:44878033C>T	uc001clv.1	+	2	624	c.264C>T	c.(262-264)TTC>TTT	p.F88F	RNF220_uc001clw.1_Silent_p.F88F	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	88					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ATCGTGATTTCCCCCCTTCTC	0.512													203	193					0	0	0.048971	0	0
GPBP1L1	60313	broad.mit.edu	37	1	46120896	46120896	+	Silent	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:46120896A>T	uc001coq.2	-	5	1517	c.156T>A	c.(154-156)GGT>GGA	p.G52G		NM_021639	NP_067652	Q9HC44	GPBL1_HUMAN	GC-rich promoter binding protein 1-like 1	52					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TGTTAAAAAAACCATCAGAGG	0.478													12	125					0	0	0.020292	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402384	47402384	+	Silent	SNP	G	A	A	rs9333005	byFrequency	TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:47402384G>A	uc001cqp.3	-	4	513	c.462C>T	c.(460-462)ATC>ATT	p.I154I	CYP4A11_uc001cqq.2_Silent_p.I154I|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	154					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AGGGCTTCAGGATGTCATAGT	0.537													40	35					0	0	0.098360	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610257	47610257	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:47610257C>T	uc001cqv.1	+	8	984	c.933C>T	c.(931-933)CTC>CTT	p.L311L	CYP4A22_uc009vyo.2_Silent_p.L311L|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	311						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						ACAAGGACCTCCGTGCTGAGG	0.552													45	105					0	0	0.048971	0	0
TAL1	6886	broad.mit.edu	37	1	47691530	47691530	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:47691530G>T	uc001cqx.2	-	2	608	c.31C>A	c.(31-33)CGC>AGC	p.R11S	TAL1_uc009vyq.2_5'Flank|TAL1_uc001cqy.2_Missense_Mutation_p.R11S|TAL1_uc001cra.1_Intron|TAL1_uc001cqz.1_Intron	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	11					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						GGGTCACTGCGAGCCGCCTCG	0.726			T	TRD@|SIL	lymphoblastic leukemia/biphasic								27	21					1.2476e-16	1.26728e-16	0.030593	1	0
SSBP3	23648	broad.mit.edu	37	1	54706582	54706582	+	Silent	SNP	G	A	A	rs142992203		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:54706582G>A	uc001cxe.2	-	13	1150	c.852C>T	c.(850-852)CCC>CCT	p.P284P	SSBP3_uc001cxf.2_Silent_p.P264P|SSBP3_uc001cxg.2_Silent_p.P257P	NM_145716	NP_663768	Q9BWW4	SSBP3_HUMAN	single stranded DNA binding protein 3 isoform a	284	Gly-rich.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	single-stranded DNA binding				0						TCTTACCTGCGGGACTGGGCA	0.592													42	118					0	0	0.048971	0	0
FAM151A	338094	broad.mit.edu	37	1	55080522	55080522	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:55080522C>T	uc001cxn.2	-	4	558	c.426G>A	c.(424-426)CTG>CTA	p.L142L	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	142						integral to membrane					0						TCTTGAAGTCCAGTTTGATGC	0.567													18	56					0	0	0.043863	0	0
BSND	7809	broad.mit.edu	37	1	55472806	55472806	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:55472806G>A	uc001cye.2	+	3	652	c.409G>A	c.(409-411)GGG>AGG	p.G137R		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	137	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						CCCTGAGATGGGGCAGCCGAA	0.612													24	67					0	0	0.091800	0	0
PCSK9	255738	broad.mit.edu	37	1	55509558	55509558	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:55509558G>A	uc001cyf.1	+	2	541	c.250G>A	c.(250-252)GAG>AAG	p.E84K	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_Intron	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	84					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GGTGCTGAAGGAGGAGACCCA	0.622													132	336					0	0	0.048971	0	0
C8B	732	broad.mit.edu	37	1	57422559	57422559	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:57422559G>A	uc001cyp.2	-	3	341	c.274C>T	c.(274-276)CCC>TCC	p.P92S	C8B_uc010oon.1_Missense_Mutation_p.P30S|C8B_uc010ooo.1_Missense_Mutation_p.P40S	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	92	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						AACTGAGAGGGCTGGAGCAAG	0.507													71	72					0	0	0.048971	0	0
INADL	10207	broad.mit.edu	37	1	62574124	62574124	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:62574124C>T	uc001dab.2	+	34	4507	c.4393C>T	c.(4393-4395)CAT>TAT	p.H1465Y	INADL_uc009waf.1_Missense_Mutation_p.H1495Y|INADL_uc001daa.2_Intron|INADL_uc001dad.3_Missense_Mutation_p.H1162Y|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.H279Y|INADL_uc009wag.2_Missense_Mutation_p.H249Y|INADL_uc010oou.1_Intron	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1465	PDZ 8.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TATAGTTATCCATGAAGTCTA	0.348													19	24					0	0	0.043863	0	0
DEPDC1	55635	broad.mit.edu	37	1	68948079	68948079	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:68948079G>A	uc001dem.3	-	8	1529	c.1412C>T	c.(1411-1413)TCA>TTA	p.S471L	DEPDC1_uc001dej.3_5'Flank|DEPDC1_uc001dek.3_Intron|DEPDC1_uc001del.3_Intron	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	471					intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		ATTTTCCTCTGAATGAAGATT	0.368													35	12					0	0	0.069456	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507089	74507089	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:74507089G>A	uc001dfy.3	-	7	1718	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	509										ovary(2)	2						AGCCTTTTGGGATTTTTCTTT	0.358													81	23					0	0	0.048971	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507330	74507330	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:74507330C>T	uc001dfy.3	-	7	1477	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	429										ovary(2)	2						TTCTTTTGTTCTGTGTAATAT	0.363													56	19					0	0	0.048971	0	0
TNNI3K	51086	broad.mit.edu	37	1	74957823	74957823	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:74957823C>T	uc001dgf.1	+	23	2275	c.2224C>T	c.(2224-2226)CCT>TCT	p.P742S	TNNI3K_uc001dge.1_Missense_Mutation_p.P843S	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	742	Poly-Ser.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GTCTCTCTCACCTTCTTCTTC	0.473													120	41					0	0	0.048971	0	0
ASB17	127247	broad.mit.edu	37	1	76397745	76397745	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:76397745C>T	uc001dhe.1	-	1	372	c.232G>A	c.(232-234)GGA>AGA	p.G78R	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	78					intracellular signal transduction					ovary(1)	1						AAACGGTATCCTGATTTTTCC	0.378													60	15					0	0	0.048971	0	0
LPPR5	163404	broad.mit.edu	37	1	99422250	99422251	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:99422250_99422251CC>TT	uc001dsb.2	-	2	506_507	c.284_285GG>AA	c.(283-285)AGG>AAA	p.R95K	LPPR5_uc001dsc.2_Missense_Mutation_p.R95K	NM_001037317	NP_001032394	Q32ZL2	LPPR5_HUMAN	phosphatidic acid phosphatase type 2d isoform 1	95						integral to membrane	hydrolase activity				0						TTTCAAAATCCCTTGTGGCTAG	0.342													28	12					0	0	0.004672	0	0
VCAM1	7412	broad.mit.edu	37	1	101190259	101190259	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:101190259C>T	uc001dti.2	+	4	861	c.741C>T	c.(739-741)TCC>TCT	p.S247S	VCAM1_uc001dtj.2_Silent_p.S247S|VCAM1_uc010ouj.1_Silent_p.S185S	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	247	Ig-like C2-type 3.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	TGACCTGTTCCAGCGAGGGTC	0.418													38	12					0	0	0.074837	0	0
ADORA3	140	broad.mit.edu	37	1	112043053	112043053	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:112043053C>T	uc001ebh.3	-	2	1243	c.476G>A	c.(475-477)AGA>AAA	p.R159K	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	159	Extracellular (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GGTGACATTTCTGTGGTACTC	0.493													41	64					0	0	0.104719	0	0
SLC16A1	6566	broad.mit.edu	37	1	113471845	113471845	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:113471845G>A	uc001ecx.2	-	2	918	c.86C>T	c.(85-87)TCC>TTC	p.S29F	SLC16A1_uc001ecy.2_Missense_Mutation_p.S29F|SLC16A1_uc001ecz.2_Missense_Mutation_p.S29F	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	29	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	GAAGCCGATGGAAATGAAAGC	0.468													34	8					0	0	0.069456	0	0
RSBN1	54665	broad.mit.edu	37	1	114311009	114311009	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:114311009G>A	uc001edq.2	-	5	1697	c.1661C>T	c.(1660-1662)TCA>TTA	p.S554L	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	554						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCATTCATTGATCTAGAGTT	0.373													18	5					0	0	0.049695	0	0
NBPF10	100132406	broad.mit.edu	37	1	145359137	145359137	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:145359137C>T	uc001end.3	+	74	9337	c.9302C>T	c.(9301-9303)GCC>GTC	p.A3101V	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3026											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TACAGAAGTGCCTTTTATGTA	0.458													11	440					0	0	0.080935	0	0
ANKRD35	148741	broad.mit.edu	37	1	145566692	145566692	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:145566692G>A	uc001eob.1	+	11	2902	c.2794G>A	c.(2794-2796)GAG>AAG	p.E932K	NBPF10_uc001emp.3_Intron	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	932	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TCAGATCAAGGAGTTGTTGAA	0.438													14	28					0	0	0.105934	0	0
FMO5	2330	broad.mit.edu	37	1	146684893	146684893	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:146684893G>A	uc001epi.2	-	4	858	c.469C>T	c.(469-471)CCT>TCT	p.P157S	FMO5_uc001eph.3_Missense_Mutation_p.P157S|FMO5_uc001epj.2_Missense_Mutation_p.P157S|FMO5_uc001epk.3_Missense_Mutation_p.P157S	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	157						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					CTTTCCAGAGGTAGATGAGCA	0.512													48	91					0	0	0.048971	0	0
THEM5	284486	broad.mit.edu	37	1	151824739	151824739	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:151824739G>A	uc009wnd.2	-	2	452	c.320C>T	c.(319-321)TCC>TTC	p.S107F		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	107							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTTACCTGAGGAAACTGCCAG	0.552													27	56					0	0	0.041601	0	0
Unknown	0	broad.mit.edu	37	1	151992726	151992726	+	RNA	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:151992726C>T	uc001ezm.1	+	9		c.2391C>T								Homo sapiens cDNA FLJ43896 fis, clone TESTI4009752.																		ATGAAGAATTCAAAGACCTCA	0.532													25	53					0	0	0.091800	0	0
HRNR	388697	broad.mit.edu	37	1	152187486	152187486	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:152187486G>A	uc001ezt.1	-	3	6695	c.6619C>T	c.(6619-6621)CGT>TGT	p.R2207C		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2207	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGAAGAACGACCTGAGCCA	0.602													13	446					0	0	0.091800	0	0
HRNR	388697	broad.mit.edu	37	1	152188267	152188267	+	Silent	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:152188267A>C	uc001ezt.1	-	3	5914	c.5838T>G	c.(5836-5838)TCT>TCG	p.S1946S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1946					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAGGGCTAGGAGACTGGCCAG	0.607													11	657					0	0	0.020292	0	0
FLG	2312	broad.mit.edu	37	1	152286961	152286961	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:152286961C>T	uc001ezu.1	-	3	437	c.401G>A	c.(400-402)AGA>AAA	p.R134K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	134					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATTCCCTTTTCTATTGTTTCT	0.363									Ichthyosis				26	92					0	0	0.041601	0	0
CRNN	49860	broad.mit.edu	37	1	152383145	152383145	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:152383145C>T	uc001ezx.2	-	3	487	c.413G>A	c.(412-414)AGA>AAA	p.R138K		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	138					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGCTCTGTCTGTGGCTGCT	0.632													148	58					0	0	0.048971	0	0
IVL	3713	broad.mit.edu	37	1	152883885	152883885	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:152883885G>A	uc001fau.2	+	2	1658	c.1612G>A	c.(1612-1614)GGG>AGG	p.G538R		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	538	39; approximate.|39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			gcagcagaaggggcagctgga	0.234													5	18					0	0	0.014758	0	0
UBAP2L	9898	broad.mit.edu	37	1	154223553	154223553	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:154223553C>T	uc001fep.3	+	13	1417	c.1250C>T	c.(1249-1251)CCC>CTC	p.P417L	UBAP2L_uc009wot.2_Missense_Mutation_p.P417L|UBAP2L_uc010pek.1_Missense_Mutation_p.P409L|UBAP2L_uc010pel.1_Missense_Mutation_p.P427L|UBAP2L_uc010pen.1_Missense_Mutation_p.P331L	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	417					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GTGCACAGCCCCTTTACAAAG	0.483													40	63					0	0	0.098360	0	0
TDRD10	126668	broad.mit.edu	37	1	154515250	154515250	+	Silent	SNP	G	A	A	rs141912752		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:154515250G>A	uc009wow.2	+	8	1294	c.456G>A	c.(454-456)GAG>GAA	p.E152E	TDRD10_uc001ffd.2_Silent_p.E152E|TDRD10_uc001ffe.2_Silent_p.E73E	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	152							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACCTGTGTGAGACAGAGAAAC	0.493													18	25					0	0	0.062417	0	0
THBS3	7059	broad.mit.edu	37	1	155171226	155171226	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:155171226A>G	uc001fix.2	-	11	1334	c.1311T>C	c.(1309-1311)AAT>AAC	p.N437N	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Silent_p.N428N|THBS3_uc001fiz.2_Silent_p.N437N|THBS3_uc001fiy.2_5'UTR|THBS3_uc010pfu.1_Silent_p.N317N|THBS3_uc010pfv.1_RNA|THBS3_uc001fja.2_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	437	EGF-like 4.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ACACTGCACCATTGCGTTCAA	0.622													27	61					0	0	0.037714	0	0
IQGAP3	128239	broad.mit.edu	37	1	156521541	156521541	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:156521541G>A	uc001fpf.2	-	15	1765	c.1690C>T	c.(1690-1692)CGG>TGG	p.R564W	IQGAP3_uc009wsb.1_Missense_Mutation_p.R521W	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	564					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGATGGTACCGAGGGGCGACA	0.567													16	32					0	0	0.033300	0	0
INSRR	3645	broad.mit.edu	37	1	156821440	156821440	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:156821440C>T	uc010pht.1	-	4	1336	c.1082G>A	c.(1081-1083)GGC>GAC	p.G361D	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.G361D	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	361					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GTACTGACAGCCCTGGCGAAG	0.562													15	23					0	0	0.033300	0	0
FCRL3	115352	broad.mit.edu	37	1	157665275	157665275	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:157665275G>A	uc001frb.2	-	8	1547	c.1255C>T	c.(1255-1257)CAT>TAT	p.H419Y	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.H419Y|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.H145Y|FCRL3_uc001frc.1_Missense_Mutation_p.H419Y	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	419	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					ACATCCTCATGATAAAATCGG	0.582													36	74					0	0	0.064281	0	0
CD1C	911	broad.mit.edu	37	1	158262565	158262565	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:158262565C>T	uc001fru.2	+	4	1082	c.790C>T	c.(790-792)CTT>TTT	p.L264F	CD1C_uc001frv.2_Missense_Mutation_p.L67F	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	264	Extracellular (Potential).|Ig-like.				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GACATGGTATCTTCAGGTGAT	0.527													41	64					0	0	0.111260	0	0
SPTA1	6708	broad.mit.edu	37	1	158627413	158627413	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:158627413G>A	uc001fst.1	-	19	2858	c.2659C>T	c.(2659-2661)CGA>TGA	p.R887*		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	887	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTAGCAGCTCGAGCACGGAGA	0.473													43	91					0	0	0.048971	0	0
IGSF9	57549	broad.mit.edu	37	1	159898380	159898380	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:159898380C>T	uc001fur.2	-	19	2996	c.2798G>A	c.(2797-2799)CGA>CAA	p.R933Q	IGSF9_uc001fuq.2_Missense_Mutation_p.R917Q|IGSF9_uc001fup.2_Missense_Mutation_p.R79Q	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	933	Pro-rich.|Cytoplasmic (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			ATTCATCTCTCGGAAGAAGGG	0.627													4	6					0	0	0.009096	0	0
COPA	1314	broad.mit.edu	37	1	160280027	160280027	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:160280027G>A	uc009wti.2	-	12	1492	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	COPA_uc001fvv.3_Silent_p.F366F|COPA_uc009wtj.1_Silent_p.F312F	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	366					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGACATATTGAATACTGGAA	0.413													85	30					0	0	0.048971	0	0
F11R	50848	broad.mit.edu	37	1	160969759	160969759	+	Missense_Mutation	SNP	G	A	A	rs144466757		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:160969759G>A	uc009wtt.2	-	6	871	c.601C>T	c.(601-603)CCC>TCC	p.P201S	F11R_uc010pjv.1_Missense_Mutation_p.P152S|F11R_uc001fxe.3_Missense_Mutation_p.P201S|F11R_uc009wtu.2_Missense_Mutation_p.P201S|F11R_uc010pjw.1_Missense_Mutation_p.P205S|F11R_uc001fxf.3_Missense_Mutation_p.P201S	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	201	Ig-like V-type 2.|Extracellular (Potential).				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			GCTGACAGGGGATCAAAGACC	0.473													43	8					0	0	0.098360	0	0
USP21	27005	broad.mit.edu	37	1	161133736	161133736	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:161133736G>A	uc010pke.1	+	9	1560	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	USP21_uc010pkc.1_Missense_Mutation_p.E395K|USP21_uc010pkd.1_Missense_Mutation_p.E395K|USP21_uc010pkf.1_Missense_Mutation_p.E395K|PPOX_uc001fyj.2_5'Flank|PPOX_uc001fyn.2_5'Flank|PPOX_uc001fyg.2_5'Flank|PPOX_uc001fyl.2_5'Flank|PPOX_uc001fym.2_5'Flank|PPOX_uc001fyk.2_5'Flank|PPOX_uc001fyh.2_5'Flank|PPOX_uc010pkg.1_5'Flank|PPOX_uc009wuc.1_5'Flank|PPOX_uc010pkh.1_5'Flank|PPOX_uc001fyi.2_5'Flank	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	395					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CACGACCTTCGAGGTTTTTTG	0.572													25	44					0	0	0.108266	0	0
RGS4	5999	broad.mit.edu	37	1	163044239	163044239	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:163044239C>T	uc009wuy.2	+	5	1018	c.507C>T	c.(505-507)CTC>CTT	p.L169L	RGS4_uc001gcl.3_Silent_p.L266L|RGS4_uc009wuz.2_3'UTR|RGS4_uc009wva.2_Silent_p.L151L	NM_005613	NP_005604	P49798	RGS4_HUMAN	regulator of G-protein signaling 4 isoform 2	169	RGS.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(2)|central_nervous_system(1)	3						GCCGCTTCCTCAAGTCTCGAT	0.507													89	167					0	0	0.048971	0	0
ALDH9A1	223	broad.mit.edu	37	1	165634254	165634254	+	Splice_Site	SNP	C	T	T	rs140134210		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:165634254C>T	uc001gdh.1	-	10	1567	c.1462_splice	c.e10+1	p.G488_splice	ALDH9A1_uc010pky.1_Splice_Site_p.G394_splice|ALDH9A1_uc010pkz.1_Splice_Site_p.G478_splice	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1						carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	CAGCTCCTCACCTGACTTCTT	0.403													29	6					0	0	0.045705	0	0
DUSP27	92235	broad.mit.edu	37	1	167096288	167096288	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:167096288C>T	uc001geb.1	+	5	1920	c.1920C>T	c.(1918-1920)AGC>AGT	p.S640S		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	640					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TGGAGGAGAGCCAGTCTATGG	0.642													7	19					0	0	0.038147	0	0
FMO3	2328	broad.mit.edu	37	1	171077319	171077319	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:171077319C>T	uc001ghi.2	+	5	695	c.584C>T	c.(583-585)TCG>TTG	p.S195L	FMO3_uc001ghh.2_Missense_Mutation_p.S195L|FMO3_uc010pmb.1_Missense_Mutation_p.S175L|FMO3_uc010pmc.1_Missense_Mutation_p.S132L	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	195	NADP (Potential).				xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTGGGGAATTCGGGCTGTGAT	0.498													15	58					0	0	0.033300	0	0
FMO3	2328	broad.mit.edu	37	1	171086346	171086346	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:171086346C>T	uc001ghi.2	+	9	1474	c.1363C>T	c.(1363-1365)CCC>TCC	p.P455S	FMO3_uc001ghh.2_Missense_Mutation_p.P455S|FMO3_uc010pmb.1_Missense_Mutation_p.P435S|FMO3_uc010pmc.1_Missense_Mutation_p.P392S	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	455					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TCTCACAGATCCCAAATTGGC	0.493													32	46					0	0	0.045705	0	0
SEC16B	89866	broad.mit.edu	37	1	177928086	177928086	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:177928086A>G	uc001gli.1	-	9	1113	c.1023T>C	c.(1021-1023)ATT>ATC	p.I341I	SEC16B_uc001glk.1_Silent_p.I18I|SEC16B_uc001glh.1_5'UTR|SEC16B_uc009wwz.1_5'UTR|SEC16B_uc001glj.1_Silent_p.I342I|SEC16B_uc001gll.3_Silent_p.I342I	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	341					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						AAAACGTCATAATATCCACCT	0.493													4	13					0	0	0.009096	0	0
TOR1AIP2	163590	broad.mit.edu	37	1	179815508	179815508	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:179815508G>A	uc001gnk.2	-	6	1499	c.1111C>T	c.(1111-1113)CCT>TCT	p.P371S	TOR1AIP2_uc001gnl.2_Missense_Mutation_p.P371S	NM_145034	NP_659471	Q8NFQ8	TOIP2_HUMAN	torsin A interacting protein 2	371						endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1						GAGCCGGCAGGGAAGGATTCG	0.507													21	29					0	0	0.049695	0	0
FAM5C	339479	broad.mit.edu	37	1	190129940	190129940	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:190129940C>T	uc001gse.1	-	7	1274	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N	FAM5C_uc010pot.1_Missense_Mutation_p.D246N	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	348						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAATTAGAATCCATTGTCCAC	0.338													21	75					0	0	0.083992	0	0
B3GALT2	8707	broad.mit.edu	37	1	193149768	193149768	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:193149768G>A	uc001gtc.3	-	2	1640	c.925C>T	c.(925-927)CCT>TCT	p.P309S	CDC73_uc001gtb.2_Intron	NM_003783	NP_003774	O43825	B3GT2_HUMAN	UDP-Gal:betaGlcNAc beta	309	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1						CAGAAGACAGGATAACGCTCA	0.418													17	38					0	0	0.038395	0	0
KCNT2	343450	broad.mit.edu	37	1	196197465	196197465	+	Silent	SNP	T	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:196197465T>A	uc001gtd.1	-	28	3357	c.3297A>T	c.(3295-3297)GTA>GTT	p.V1099V	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.V1032V|KCNT2_uc001gtf.1_Silent_p.V1075V|KCNT2_uc001gtg.1_RNA	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1099	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GAATTAAGTATCTAATAAAAG	0.358													10	22					0	0	0.058154	0	0
PKP1	5317	broad.mit.edu	37	1	201287835	201287835	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:201287835C>T	uc001gwd.2	+	6	1395	c.1144C>T	c.(1144-1146)CCC>TCC	p.P382S	PKP1_uc001gwe.2_Missense_Mutation_p.P382S|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	382	ARM 4.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CGTCATCATTCCCTTCTCTGG	0.587													6	21					0	0	0.029380	0	0
GPR37L1	9283	broad.mit.edu	37	1	202092105	202092105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:202092105G>A	uc001gxj.2	+	1	77	c.14G>A	c.(13-15)TGG>TAG	p.W5*		NM_004767	NP_004758	O60883	ETBR2_HUMAN	G-protein coupled receptor 37 like 1 precursor	5						integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2						CGGTGGCTGTGGCCCCTGGCT	0.667													63	12					0	0	0.048971	0	0
MFSD4	148808	broad.mit.edu	37	1	205554120	205554120	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:205554120G>A	uc001hcv.3	+	5	1061	c.975_splice	c.e5+1	p.T325_splice	MFSD4_uc010prk.1_Splice_Site_p.T238_splice|MFSD4_uc010prl.1_Splice_Site|MFSD4_uc010prm.1_Splice_Site_p.T270_splice	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing						transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TGGGTTGACGGTGAGCCTGCC	0.587											OREG0014158	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	47					0	0	0.055883	0	0
C4BPA	722	broad.mit.edu	37	1	207297306	207297306	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:207297306C>T	uc001hfo.2	+	5	662	c.468C>T	c.(466-468)GTC>GTT	p.V156V		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	156	Sushi 2.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GTTGTGAAGTCCAAGATAGAG	0.348													10	4					0	0	0.080935	0	0
C4BPA	722	broad.mit.edu	37	1	207317945	207317945	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:207317945C>T	uc001hfo.2	+	12	1871	c.1677C>T	c.(1675-1677)CTC>CTT	p.L559L		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	559					complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TGCAGTGTCTCCCAAACCCAG	0.468													9	37					0	0	0.047766	0	0
CR2	1380	broad.mit.edu	37	1	207646192	207646192	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:207646192G>A	uc001hfw.2	+	10	1740	c.1646G>A	c.(1645-1647)GGA>GAA	p.G549E	CR2_uc001hfv.2_Missense_Mutation_p.G549E|CR2_uc009xch.2_Missense_Mutation_p.G549E|CR2_uc009xci.1_Missense_Mutation_p.G34E	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	549	Sushi 9.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TTTCCATATGGAACCACGGTC	0.473													17	40					0	0	0.038395	0	0
USH2A	7399	broad.mit.edu	37	1	215916657	215916657	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:215916657G>A	uc001hku.1	-	59	11797	c.11410C>T	c.(11410-11412)CCT>TCT	p.P3804S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3804	Fibronectin type-III 23.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TACTCCACAGGAATTTCGGGG	0.333										HNSCC(13;0.011)			22	46					0	0	0.083992	0	0
OBSCN	84033	broad.mit.edu	37	1	228520616	228520616	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:228520616C>T	uc009xez.1	+	57	15752	c.15708C>T	c.(15706-15708)TTC>TTT	p.F5236F	OBSCN_uc001hsn.2_Silent_p.F5236F|OBSCN_uc001hsr.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5236					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CATCCTACTTCAGTGCCCAAG	0.612													10	27					0	0	0.080935	0	0
KIAA1804	84451	broad.mit.edu	37	1	233518359	233518359	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:233518359G>A	uc001hvt.3	+	10	3274	c.3013G>A	c.(3013-3015)GAA>AAA	p.E1005K	KIAA1804_uc001hvu.3_Missense_Mutation_p.E451K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	1005					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TGCTGACGTGGAAGGTCAGAG	0.512													27	20					0	0	0.030593	0	0
RYR2	6262	broad.mit.edu	37	1	237947421	237947421	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:237947421G>A	uc001hyl.1	+	90	12529	c.12409G>A	c.(12409-12411)GAA>AAA	p.E4137K	RYR2_uc010pya.1_Missense_Mutation_p.E552K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4137					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGGCCGCATCGAAATCATGGG	0.512													81	15					0	0	0.048971	0	0
KIF26B	55083	broad.mit.edu	37	1	245848736	245848736	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:245848736C>T	uc001ibf.1	+	12	2891	c.2451C>T	c.(2449-2451)AGC>AGT	p.S817S	KIF26B_uc001ibg.1_Silent_p.S435S|KIF26B_uc001ibh.1_Silent_p.S59S	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	817					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GCGGGGAGAGCTCCTGCGAAG	0.657													20	4					0	0	0.055883	0	0
ZNF695	57116	broad.mit.edu	37	1	247150618	247150618	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:247150618C>T	uc009xgu.2	-	4	1344	c.1199G>A	c.(1198-1200)AGA>AAA	p.R400K	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	400	C2H2-type 9.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AGTATGAATTCTCTTATGCTG	0.393													31	17					0	0	0.054565	0	0
OR2G3	81469	broad.mit.edu	37	1	247769279	247769280	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:247769279_247769280AC>TT	uc010pyz.1	+	1	392_393	c.392_393AC>TT	c.(391-393)CAC>CTT	p.H131L		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAACCCCTCCACTATGTAGTCA	0.505													38	161					0	0	0.004672	0	0
OR2W3	343171	broad.mit.edu	37	1	248059693	248059693	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:248059693G>A	uc001idp.1	+	3	1074	c.805G>A	c.(805-807)GAC>AAC	p.D269N	OR2W3_uc010pzb.1_Missense_Mutation_p.D269N	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TTCTTCCCAGGACCAGGGCAT	0.542													23	72					0	0	0.030593	0	0
OR2L8	391190	broad.mit.edu	37	1	248112261	248112261	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:248112261C>T	uc001idt.1	+	1	102	c.102C>T	c.(100-102)TTC>TTT	p.F34F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TTTTCATTTTCCTGATGGCTC	0.398													218	57					0	0	0.048971	0	0
OR2M2	391194	broad.mit.edu	37	1	248343781	248343781	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:248343781C>T	uc010pzf.1	+	1	494	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCCACATTTTCCTTCTCCTTT	0.423													157	143					0	0	0.048971	0	0
OR2M4	26245	broad.mit.edu	37	1	248403116	248403116	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr1:248403116G>A	uc010pzh.1	+	1	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CCGCAACAAAGAAGTGTTCAG	0.423													13	38					0	0	0.020292	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5203833	5203833	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:5203833G>A	uc009xhz.2	-	3		c.447C>T				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						ATAGCAAATGGTACATGAATA	0.408													15	13					0	0	0.038395	0	0
NEBL	10529	broad.mit.edu	37	10	21101806	21101806	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:21101806G>A	uc001iqi.2	-	24	2807	c.2410C>T	c.(2410-2412)CCT>TCT	p.P804S	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Missense_Mutation_p.P141S	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	804	Nebulin 23.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TCTGTCACAGGATCGTCCACG	0.468													24	27					0	0	0.083992	0	0
GPR158	57512	broad.mit.edu	37	10	25886955	25886955	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:25886955G>A	uc001isj.2	+	11	2460	c.2400G>A	c.(2398-2400)GGG>GGA	p.G800G	GPR158_uc001isk.2_Silent_p.G175G	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	800	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GGAACACAGGGAAATCCAAGG	0.547													33	50					0	0	0.059317	0	0
RAB18	22931	broad.mit.edu	37	10	27822666	27822666	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:27822666T>C	uc001itv.2	+	5	312	c.262T>C	c.(262-264)TAT>CAT	p.Y88H	RAB18_uc001itw.2_Missense_Mutation_p.Y117H|RAB18_uc010qdq.1_Missense_Mutation_p.Y88H|RAB18_uc010qdr.1_Intron	NM_021252	NP_067075	Q9NP72	RAB18_HUMAN	RAB18, member RAS oncogene family	88					endocytosis|protein transport|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction	intracellular|plasma membrane	ATP binding|GTP binding|GTPase activity|transcription factor binding				0						TATTTCAGTTTATGATGTCAC	0.303													23	34					0	0	0.030593	0	0
ARMC4	55130	broad.mit.edu	37	10	28272896	28272896	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:28272896G>A	uc009xky.2	-	6	793	c.695C>T	c.(694-696)TCA>TTA	p.S232L	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.S232L|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	232							binding			ovary(4)|skin(2)	6						ACATCCATTTGAAAATTCATA	0.403													16	32					0	0	0.033300	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508235	37508235	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:37508235C>T	uc001iza.1	+	34	3526	c.3427C>T	c.(3427-3429)CAT>TAT	p.H1143Y		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1199						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TGAATCACACCATCCTAGACT	0.398													37	38					0	0	0.064281	0	0
ZNF25	219749	broad.mit.edu	37	10	38242045	38242045	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:38242045G>A	uc001ize.1	-	6	486	c.381C>T	c.(379-381)TTC>TTT	p.F127F	ZNF25_uc001izf.1_Silent_p.F91F	NM_145011	NP_659448	P17030	ZNF25_HUMAN	zinc finger protein 25	127	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|central_nervous_system(1)	4		all_neural(218;0.0218)|Breast(68;0.0389)|Ovarian(717;0.0443)|Renal(717;0.157)				ACTTCTGGCAGAAGAACTTCC	0.408													52	62					0	0	0.048971	0	0
ZNF239	8187	broad.mit.edu	37	10	44052973	44052973	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:44052973C>T	uc001jaw.3	-	2	1208	c.555G>A	c.(553-555)GGG>GGA	p.G185G	ZNF239_uc001jax.3_Silent_p.G185G|ZNF239_uc009xmj.2_Silent_p.G185G|ZNF239_uc009xmk.2_Silent_p.G185G	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	185					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TAAGTATTTTCCCACAGTTAT	0.423													37	50					0	0	0.064281	0	0
TMEM72	643236	broad.mit.edu	37	10	45430207	45430207	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:45430207C>G	uc001jbn.2	+	5	650	c.453C>G	c.(451-453)GAC>GAG	p.D151E	uc001jbk.1_Intron|uc001jbl.2_Intron|TMEM72_uc009xmm.1_Missense_Mutation_p.D33E	NM_001123376	NP_001116848	A0PK05	TMM72_HUMAN	transmembrane protein 72	151						integral to membrane					0						AGTACACAGACCCCTCTAGCA	0.612													54	80					0	0	0.048971	0	0
PCDH15	65217	broad.mit.edu	37	10	55955504	55955504	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:55955504G>A	uc001jju.1	-	11	1639	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L	PCDH15_uc010qhq.1_Missense_Mutation_p.S420L|PCDH15_uc010qhr.1_Missense_Mutation_p.S415L|PCDH15_uc010qhs.1_Missense_Mutation_p.S420L|PCDH15_uc010qht.1_Missense_Mutation_p.S415L|PCDH15_uc010qhu.1_Missense_Mutation_p.S415L|PCDH15_uc001jjv.1_Missense_Mutation_p.S393L|PCDH15_uc010qhv.1_Missense_Mutation_p.S415L|PCDH15_uc010qhw.1_Missense_Mutation_p.S378L|PCDH15_uc010qhx.1_Missense_Mutation_p.S415L|PCDH15_uc010qhy.1_Missense_Mutation_p.S420L|PCDH15_uc010qhz.1_Missense_Mutation_p.S415L|PCDH15_uc010qia.1_Missense_Mutation_p.S393L|PCDH15_uc010qib.1_Missense_Mutation_p.S393L|PCDH15_uc001jjw.2_Missense_Mutation_p.S415L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	415	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAGACTGTCCGAAATGGTTGC	0.373										HNSCC(58;0.16)			24	53					0	0	0.030593	0	0
PCDH15	65217	broad.mit.edu	37	10	56077108	56077108	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:56077108G>A	uc001jju.1	-	8	1194	c.799C>T	c.(799-801)CCT>TCT	p.P267S	PCDH15_uc010qhq.1_Missense_Mutation_p.P272S|PCDH15_uc010qhr.1_Missense_Mutation_p.P267S|PCDH15_uc010qhs.1_Missense_Mutation_p.P272S|PCDH15_uc010qht.1_Missense_Mutation_p.P267S|PCDH15_uc010qhu.1_Missense_Mutation_p.P267S|PCDH15_uc001jjv.1_Missense_Mutation_p.P245S|PCDH15_uc010qhv.1_Missense_Mutation_p.P267S|PCDH15_uc010qhw.1_Missense_Mutation_p.P230S|PCDH15_uc010qhx.1_Missense_Mutation_p.P267S|PCDH15_uc010qhy.1_Missense_Mutation_p.P272S|PCDH15_uc010qhz.1_Missense_Mutation_p.P267S|PCDH15_uc010qia.1_Missense_Mutation_p.P245S|PCDH15_uc010qib.1_Missense_Mutation_p.P245S|PCDH15_uc001jjw.2_Missense_Mutation_p.P267S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	267	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AGGACACAAGGAAGAAACATT	0.478										HNSCC(58;0.16)			39	39					0	0	0.074837	0	0
ANK3	288	broad.mit.edu	37	10	61831470	61831470	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:61831470C>T	uc001jky.2	-	37	9361	c.9169G>A	c.(9169-9171)GGA>AGA	p.G3057R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3057					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GATTCCTTTCCTGGGCTAAAC	0.468													74	65					0	0	0.048971	0	0
ANXA2P3	305	broad.mit.edu	37	10	66586171	66586171	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:66586171G>A	uc009xpm.1	+	1		c.887G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						CCGGGGGCTCGAGATAAGGTC	0.478													5	6					0	0	0.029380	0	0
ANXA2P3	305	broad.mit.edu	37	10	66586173	66586173	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:66586173G>A	uc009xpm.1	+	1		c.889G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						GGGGGCTCGAGATAAGGTCCT	0.473													5	6					0	0	0.029380	0	0
TSPAN15	23555	broad.mit.edu	37	10	71243542	71243542	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:71243542C>T	uc001jpo.1	+	2	317	c.192C>T	c.(190-192)ATC>ATT	p.I64I		NM_012339	NP_036471	O95858	TSN15_HUMAN	transmembrane 4 superfamily member 15	64	Helical; (Potential).					integral to plasma membrane|membrane fraction					0						CTCCAGCCATCATCCTCATCC	0.552													30	37					0	0	0.041601	0	0
NODAL	4838	broad.mit.edu	37	10	72195531	72195531	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:72195531C>T	uc001jrc.2	-	2	444	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_018055	NP_060525	Q96S42	NODAL_HUMAN	nodal precursor	134					growth	extracellular space	cytokine activity|growth factor activity			large_intestine(1)|kidney(1)	2						TGAATAGGTCCATCTGAAACC	0.557													21	47					0	0	0.076483	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407925	75407925	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:75407925C>T	uc001jut.3	-	4	1637	c.1485G>A	c.(1483-1485)GCG>GCA	p.A495A	SYNPO2L_uc001jus.3_Silent_p.A271A	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	495	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GGCTGTCGTTCGCCCTTTTGG	0.652													6	24					0	0	0.029380	0	0
LDB3	11155	broad.mit.edu	37	10	88428503	88428503	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:88428503G>A	uc001kdv.2	+	1	78	c.55G>A	c.(55-57)GGG>AGG	p.G19R	LDB3_uc010qml.1_Missense_Mutation_p.G19R|LDB3_uc010qmm.1_Missense_Mutation_p.G19R|LDB3_uc001kdu.2_Missense_Mutation_p.G19R|LDB3_uc009xsz.2_5'UTR|LDB3_uc001kdr.2_Missense_Mutation_p.G19R|LDB3_uc009xsy.2_Missense_Mutation_p.G19R|LDB3_uc001kds.2_Missense_Mutation_p.G19R|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	19	PDZ.					cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						CCGTCTGCAGGGGGGCAAGGA	0.652													36	50					0	0	0.086207	0	0
EXOC6	54536	broad.mit.edu	37	10	94733881	94733881	+	Silent	SNP	T	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:94733881T>A	uc001kig.2	+	18	1911	c.1845T>A	c.(1843-1845)CTT>CTA	p.L615L	EXOC6_uc010qnr.1_Silent_p.L631L|EXOC6_uc001kie.2_Silent_p.L610L|EXOC6_uc009xub.2_Silent_p.L614L|EXOC6_uc009xuc.2_Silent_p.L512L|EXOC6_uc001kih.2_RNA|EXOC6_uc001kii.2_Silent_p.L189L	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	615					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				TTGTTCAGCTTGCTGATTATG	0.363													193	243					0	0	0.048971	0	0
MYOF	26509	broad.mit.edu	37	10	95107398	95107398	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:95107398C>T	uc001kin.2	-	37	4348	c.4225G>A	c.(4225-4227)GAG>AAG	p.E1409K	MYOF_uc001kio.2_Missense_Mutation_p.E1396K|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1409	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						ACGATGTCCTCTTTCCCTGCA	0.463													15	18					0	0	0.033300	0	0
LGI1	9211	broad.mit.edu	37	10	95557277	95557277	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:95557277C>T	uc001kjc.3	+	8	1727	c.1391C>T	c.(1390-1392)TCG>TTG	p.S464L	LGI1_uc010qnv.1_Missense_Mutation_p.S416L|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	464	EAR 6.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GGAGGCTCCTCGTTCCAGGAT	0.443													22	34					0	0	0.083992	0	0
CYP2C9	1559	broad.mit.edu	37	10	96708970	96708970	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:96708970G>A	uc001kka.3	+	5	773	c.748G>A	c.(748-750)GAA>AAA	p.E250K	CYP2C9_uc009xut.2_Missense_Mutation_p.E250K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	250					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	AAAAGTAAAAGAACACCAAGA	0.313													8	34					0	0	0.038147	0	0
PDLIM1	9124	broad.mit.edu	37	10	96997712	96997712	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:96997712A>G	uc001kkh.2	-	7	1069	c.960T>C	c.(958-960)GGT>GGC	p.G320G	PDLIM1_uc001kki.2_3'UTR|PDLIM1_uc009xuv.2_3'UTR|PDLIM1_uc001kkj.1_3'UTR	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	320					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CCACTTCATAACCCTCAGGTG	0.537													7	31					0	0	0.038147	0	0
TCTN3	26123	broad.mit.edu	37	10	97442431	97442431	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:97442431G>A	uc001klb.3	-	12	1673	c.1429C>T	c.(1429-1431)CTC>TTC	p.L477F	TCTN3_uc001kla.3_Missense_Mutation_p.L321F|TCTN3_uc010qoi.1_Missense_Mutation_p.L329F	NM_015631	NP_056446	Q6NUS6	TECT3_HUMAN	tectonic 3 isoform a precursor	477	Extracellular (Potential).				apoptosis	integral to membrane					0		Colorectal(252;0.0815)		Epithelial(162;1.69e-07)|all cancers(201;5.63e-06)		TGCCTGTTGAGGATCCTGGTC	0.438													57	90					0	0	0.048971	0	0
TLL2	7093	broad.mit.edu	37	10	98129906	98129906	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:98129906C>T	uc001kml.1	-	20	3055	c.2829G>A	c.(2827-2829)GAG>GAA	p.E943E		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	943	CUB 5.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CGCAGTCGGCCTCCTCCTCAA	0.637													23	29					0	0	0.069288	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98362054	98362054	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:98362054C>T	uc001kmq.2	-	16	2471	c.2343G>A	c.(2341-2343)CCG>CCA	p.P781P	PIK3AP1_uc001kmo.2_Silent_p.P380P|PIK3AP1_uc001kmp.2_Silent_p.P603P	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	781	Pro-rich.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		AGGCAGCTCTCGGAGGCACCC	0.507													23	38					0	0	0.069288	0	0
CHUK	1147	broad.mit.edu	37	10	101980384	101980384	+	Silent	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:101980384T>C	uc001kqp.2	-	5	490	c.435A>G	c.(433-435)CTA>CTG	p.L145L		NM_001278	NP_001269	O15111	IKKA_HUMAN	conserved helix-loop-helix ubiquitous kinase	145	Protein kinase.				I-kappaB phosphorylation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|nucleus	ATP binding|identical protein binding|IkappaB kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|breast(1)	7		Colorectal(252;0.117)		Epithelial(162;2.05e-10)|all cancers(201;1.91e-08)		TTTCAGGTTTTAGATCTCGAT	0.308													23	24					0	0	0.099896	0	0
SEMA4G	57715	broad.mit.edu	37	10	102743797	102743797	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:102743797G>A	uc001krw.1	+	14	2825	c.2441G>A	c.(2440-2442)GGG>GAG	p.G814E	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krx.2_Intron|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Missense_Mutation_p.P167L|MRPL43_uc001krz.1_RNA|MRPL43_uc001ksa.1_Missense_Mutation_p.P167L|MRPL43_uc001ksb.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	809	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		GTACCAGCAGGGCCCTGCTCC	0.587													13	69					0	0	0.024245	0	0
CNNM2	54805	broad.mit.edu	37	10	104816663	104816663	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:104816663C>T	uc001kwm.2	+	4	2139	c.2015C>T	c.(2014-2016)CCC>CTC	p.P672L	CNNM2_uc001kwn.2_Missense_Mutation_p.P672L	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	672					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AAGAAAGCCCCCGAATACTAC	0.443													25	72					0	0	0.030593	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118364911	118364911	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:118364911C>T	uc001lco.1	+	12	1204	c.1186C>T	c.(1186-1188)CCA>TCA	p.P396S	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.P396S	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	396	PLAT.				lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		GATTCTCAAACCAGGCTCAAC	0.393													19	63					0	0	0.062417	0	0
HSPA12A	259217	broad.mit.edu	37	10	118434800	118434800	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:118434800G>A	uc001lct.2	-	12	1625	c.1520C>T	c.(1519-1521)CCC>CTC	p.P507L	HSPA12A_uc001lcu.2_Missense_Mutation_p.P424L	NM_025015	NP_079291	O43301	HS12A_HUMAN	heat shock 70kDa protein 12A	507							ATP binding			ovary(1)	1				all cancers(201;0.0158)		CACGTCCTGGGGGATGATGAT	0.667													5	20					0	0	0.014758	0	0
RGS10	6001	broad.mit.edu	37	10	121275051	121275051	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:121275051G>A	uc001lee.2	-	3	345	c.345C>T	c.(343-345)CAC>CAT	p.H115H	RGS10_uc001lef.2_Silent_p.H109H|RGS10_uc001leg.2_Silent_p.H123H	NM_002925	NP_002916	O43665	RGS10_HUMAN	regulator of G-protein signaling 10 isoform b	115	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|protein binding|signal transducer activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.00105)|GBM - Glioblastoma multiforme(135;0.195)		ACATCAGAGGGTGCGGTTCTT	0.507													14	18					0	0	0.020292	0	0
ATE1	11101	broad.mit.edu	37	10	123670484	123670484	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:123670484C>T	uc001lfp.2	-	5	602	c.520G>A	c.(520-522)GGA>AGA	p.G174R	ATE1_uc001lfq.2_Missense_Mutation_p.G174R|ATE1_uc010qtr.1_Missense_Mutation_p.G59R|ATE1_uc010qts.1_Missense_Mutation_p.G78R|ATE1_uc010qtt.1_Missense_Mutation_p.G167R|ATE1_uc001lfr.2_5'UTR|ATE1_uc009xzu.2_Intron	NM_007041	NP_008972	O95260	ATE1_HUMAN	arginyltransferase 1 isoform 2	174					protein arginylation	cytoplasm|nucleus	acyltransferase activity|arginyltransferase activity				0		all_neural(114;0.061)|Lung NSC(174;0.095)|all_lung(145;0.124)|Breast(234;0.212)				AACTTCTCTCCTACGAAATCT	0.388													34	34					0	0	0.054565	0	0
BTBD16	118663	broad.mit.edu	37	10	124066713	124066713	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:124066713C>T	uc001lgc.1	+	10	1052	c.801C>T	c.(799-801)ACC>ACT	p.T267T	BTBD16_uc001lgd.1_Silent_p.T266T	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	267										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				GGTTATTTACCTTTAGTGAAT	0.368													14	57					0	0	0.033300	0	0
DMBT1	1755	broad.mit.edu	37	10	124351962	124351962	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:124351962G>A	uc001lgk.1	+	20	2457	c.2351G>A	c.(2350-2352)GGA>GAA	p.G784E	DMBT1_uc001lgl.1_Missense_Mutation_p.G774E|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.G784E|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.G397E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	784	SRCR 6.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCGGCCCCAGGAAATGCCCGG	0.627													91	120					0	0	0.048971	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135111499	135111499	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:135111499G>A	uc001lmg.1	-	5	930	c.573C>T	c.(571-573)TTC>TTT	p.F191F	TUBGCP2_uc010qvc.1_Silent_p.F191F|TUBGCP2_uc009ybk.1_Silent_p.F191F|TUBGCP2_uc010qvd.1_Silent_p.F61F|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	191					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		CACCAATCAGGAAATCCCCGA	0.522													11	33					0	0	0.069234	0	0
CYP2E1	1571	broad.mit.edu	37	10	135347332	135347332	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:135347332G>A	uc001lnj.1	+	6	931	c.898G>A	c.(898-900)GGG>AGG	p.G300R	CYP2E1_uc001lnk.1_Missense_Mutation_p.G163R|CYP2E1_uc009ybl.1_Missense_Mutation_p.G101R|CYP2E1_uc009ybm.1_Intron|CYP2E1_uc001lnl.1_Missense_Mutation_p.G101R	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	300	Substrate binding (Probable).				drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	GTTCTTTGCGGGGACAGAGAC	0.537									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				37	41					0	0	0.086207	0	0
SIGIRR	59307	broad.mit.edu	37	11	407816	407816	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:407816C>T	uc001lpd.2	-	5	811	c.481_splice	c.e5+1	p.D161_splice	SIGIRR_uc001lpf.2_Splice_Site_p.D161_splice|SIGIRR_uc001lpe.1_Splice_Site_p.D161_splice|SIGIRR_uc001lpg.2_Splice_Site_p.D161_splice	NM_001135054	NP_001128526	Q6IA17	SIGIR_HUMAN	single Ig IL-1R-related molecule						acute-phase response|innate immune response|negative regulation of chemokine biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity	integral to membrane	protein binding|transmembrane receptor activity				0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCCCACGCACCGTTTATCTC	0.687													24	45					0	0	0.108266	0	0
MUC5B	727897	broad.mit.edu	37	11	1271698	1271698	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:1271698C>T	uc009ycr.1	+	51	15133	c.15007C>T	c.(15007-15009)CTG>TTG	p.L5003L	MUC5B_uc001ltb.2_Silent_p.L4533L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4530	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTCCTCCTCCCTGGGCACCAC	0.627													37	47					0	0	0.048971	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606139	1606139	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:1606139C>T	uc001ltu.1	-	1	375	c.341G>A	c.(340-342)GGA>GAA	p.G114E	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	114	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACCCTTGGATCCCCCACAAGA	0.652													30	22					0	0	0.050027	0	0
TSPAN32	10077	broad.mit.edu	37	11	2339139	2339139	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:2339139G>A	uc001lvy.1	+	10	1085	c.948G>A	c.(946-948)CGG>CGA	p.R316R	TSPAN32_uc009ydl.1_RNA|TSPAN32_uc001lvz.1_Silent_p.R286R|TSPAN32_uc001lwb.1_3'UTR|TSPAN32_uc001lwc.1_Silent_p.R261R|TSPAN32_uc001lwd.1_Silent_p.R248R	NM_139022	NP_620591	Q96QS1	TSN32_HUMAN	tumor-suppressing subtransferable candidate 6	316					cell-cell signaling	integral to membrane				central_nervous_system(1)	1		all_epithelial(84;4.89e-05)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.00791)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000533)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		gccctgagcggggtctctcag	0													10	21					0	0	0.105934	0	0
CARS	833	broad.mit.edu	37	11	3039907	3039907	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:3039907T>C	uc001lxh.2	-	12	1293	c.1219A>G	c.(1219-1221)ATG>GTG	p.M407V	CARS_uc001lxe.2_Missense_Mutation_p.M397V|CARS_uc001lxf.2_Missense_Mutation_p.M490V|CARS_uc001lxg.2_Missense_Mutation_p.M407V|CARS_uc010qxo.1_Missense_Mutation_p.M490V|CARS_uc010qxp.1_Missense_Mutation_p.M420V	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	407	KMSKS region.				cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	GACTTTGACATTTTGCAGCCT	0.478			T	ALK	ALCL								32	36					0	0	0.037714	0	0
PGAP2	27315	broad.mit.edu	37	11	3832548	3832548	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:3832548C>T	uc001lys.2	+	2	185	c.59C>T	c.(58-60)ACC>ATC	p.T20I	PGAP2_uc001lyl.2_Missense_Mutation_p.P10S|PGAP2_uc010qxw.1_Missense_Mutation_p.T77I|PGAP2_uc010qxx.1_Intron|PGAP2_uc001lyp.3_Missense_Mutation_p.P32S|PGAP2_uc010qxy.1_Missense_Mutation_p.T77I|PGAP2_uc010qxz.1_Missense_Mutation_p.T77I|PGAP2_uc001lyn.3_Intron|PGAP2_uc010qya.1_RNA|PGAP2_uc001lyr.2_Missense_Mutation_p.T20I|PGAP2_uc010qyb.1_Intron|PGAP2_uc001lyt.2_Intron	NM_014489	NP_055304	Q9UHJ9	PGAP2_HUMAN	FGF receptor activating protein 1 isoform 1	20					GPI anchor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein transporter activity				0						CTCCGCTTCACCATGGTGGCC	0.607													16	40					0	0	0.033300	0	0
OR52B4	143496	broad.mit.edu	37	11	4388762	4388762	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:4388762C>T	uc010qye.1	-	1	764	c.764G>A	c.(763-765)GGG>GAG	p.G255E		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		GATGCCAGACCCATAAAAGAG	0.493													26	56					0	0	0.034045	0	0
OR52B4	143496	broad.mit.edu	37	11	4388942	4388942	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:4388942C>T	uc010qye.1	-	1	584	c.584G>A	c.(583-585)CGA>CAA	p.R195Q		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATGTTTATTCGAATGTCATT	0.338													18	26					0	0	0.038395	0	0
OR52M1	119772	broad.mit.edu	37	11	4567205	4567205	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:4567205C>T	uc010qyf.1	+	1	785	c.785C>T	c.(784-786)TCC>TTC	p.S262F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGTTTCTTCCCTGATTCAC	0.502													23	40					0	0	0.062417	0	0
OR51M1	390059	broad.mit.edu	37	11	5411147	5411147	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:5411147C>T	uc010qzc.1	+	1	519	c.519C>T	c.(517-519)CTC>CTT	p.L173L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	173						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTATTGTCCTCCTCCTGAAGG	0.527													91	118					0	0	0.048971	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529680	5529680	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:5529680C>T	uc001may.1	-	2	1195	c.1109G>A	c.(1108-1110)AGC>AAC	p.S370N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	370										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGTTCCTGGCTTTGGCTGAG	0.542													58	127					0	0	0.048971	0	0
OR52N1	79473	broad.mit.edu	37	11	5809912	5809912	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:5809912G>A	uc010qzo.1	-	1	135	c.135C>T	c.(133-135)TTC>TTT	p.F45F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		ACATAAGGCCGAAGTTCCCTG	0.463													17	30					0	0	0.033300	0	0
ZNF215	7762	broad.mit.edu	37	11	6964841	6964841	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:6964841G>A	uc001mey.2	+	6	1269	c.681G>A	c.(679-681)ATG>ATA	p.M227I	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Intron|ZNF215_uc001mez.1_Missense_Mutation_p.M227I	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	227	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		GATGGATAATGGAGAAAGAAA	0.353													40	83					0	0	0.045515	0	0
CTR9	9646	broad.mit.edu	37	11	10785008	10785008	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:10785008C>T	uc001mja.2	+	8	1029	c.880C>T	c.(880-882)CAT>TAT	p.H294Y		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	294					histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TCTGGCCCTCCATGCATTCCA	0.383													10	22					0	0	0.080935	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077217	19077217	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:19077217G>A	uc001mph.2	-	2	821	c.733C>T	c.(733-735)CTA>TTA	p.L245L		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	245	Helical; Name=6; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						CATAATATTAGGAACCACTGA	0.498													25	45					0	0	0.108266	0	0
NELL1	4745	broad.mit.edu	37	11	20805363	20805363	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:20805363G>A	uc001mqe.2	+	3	475	c.322G>A	c.(322-324)GAA>AAA	p.E108K	NELL1_uc001mqf.2_Missense_Mutation_p.E108K|NELL1_uc009yid.2_Missense_Mutation_p.E136K|NELL1_uc010rdo.1_Missense_Mutation_p.E108K|NELL1_uc010rdp.1_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	108	TSP N-terminal.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GTCCATTCGAGAACTGGAGCA	0.413													15	41					0	0	0.033300	0	0
QSER1	79832	broad.mit.edu	37	11	32955372	32955372	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:32955372A>G	uc001mty.2	+	4	2448	c.2181A>G	c.(2179-2181)TTA>TTG	p.L727L	QSER1_uc001mtz.1_Silent_p.L488L|QSER1_uc001mua.2_Silent_p.L232L	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	727	Gln-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					AGGTCCTTTTAGATTCTGCCT	0.413													15	29					0	0	0.028581	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136831	40136831	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:40136831C>T	uc001mxa.1	-	2	2976	c.1012G>A	c.(1012-1014)GGG>AGG	p.G338R	LRRC4C_uc001mxc.1_Missense_Mutation_p.G334R|LRRC4C_uc001mxd.1_Missense_Mutation_p.G334R|LRRC4C_uc001mxb.1_Missense_Mutation_p.G334R	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	338	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ATGTACCTCCCCTTTAGATTG	0.527													16	27					0	0	0.028581	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45945791	45945791	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:45945791C>T	uc001nbv.1	+	4	566	c.455C>T	c.(454-456)GCT>GTT	p.A152V	GYLTL1B_uc001nbw.1_Missense_Mutation_p.A121V|GYLTL1B_uc001nbx.1_Missense_Mutation_p.A152V|GYLTL1B_uc001nby.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	152	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		ATGGTGCCTGCTGTCCGTGTC	0.597													25	51					0	0	0.099896	0	0
NR1H3	10062	broad.mit.edu	37	11	47281984	47281984	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:47281984A>G	uc009ylm.2	+	4	478	c.257A>G	c.(256-258)AAG>AGG	p.K86R	NR1H3_uc009yll.1_Missense_Mutation_p.K92R|NR1H3_uc010rhk.1_Missense_Mutation_p.K92R|NR1H3_uc001nek.2_Missense_Mutation_p.K41R|NR1H3_uc001nej.2_Missense_Mutation_p.K86R|NR1H3_uc001nel.2_Missense_Mutation_p.K41R|NR1H3_uc001nen.3_Missense_Mutation_p.K86R|NR1H3_uc001nem.2_Missense_Mutation_p.K86R|NR1H3_uc001nep.2_5'UTR	NM_005693	NP_005684	Q13133	NR1H3_HUMAN	nuclear receptor subfamily 1, group H, member 3	86					apoptotic cell clearance|cellular response to lipopolysaccharide|cholesterol homeostasis|negative regulation of cholesterol storage|negative regulation of inflammatory response|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of macrophage activation|negative regulation of pancreatic juice secretion|negative regulation of pinocytosis|negative regulation of secretion of lysosomal enzymes|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of cholesterol homeostasis|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor biosynthetic process|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of circadian rhythm|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to progesterone stimulus|triglyceride homeostasis	nuclear chromatin|nucleoplasm	cholesterol binding|steroid hormone receptor activity|sterol response element binding|transcription coactivator activity|zinc ion binding			ovary(2)|lung(1)	3						AAGCGGAAAAAGGGGCCAGCC	0.567													4	95					0	0	0.009096	0	0
OR4X2	119764	broad.mit.edu	37	11	48266760	48266760	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:48266760C>T	uc001ngs.1	+	1	105	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGGGAATTTCCTCATTGTGC	0.473													42	76					0	0	0.039052	0	0
OR4X1	390113	broad.mit.edu	37	11	48285864	48285864	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:48285864T>G	uc010rht.1	+	1	452	c.452T>G	c.(451-453)CTG>CGG	p.L151R		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						GGCGGGGGCCTGCTGCATTCT	0.557													9	32					0	0	0.033300	0	0
OR4C16	219428	broad.mit.edu	37	11	55339891	55339891	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:55339891G>A	uc010rih.1	+	1	288	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GCGAGTGCATGATCCAAGTCT	0.468													72	126					0	0	0.048971	0	0
SPRYD5	84767	broad.mit.edu	37	11	55655574	55655574	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:55655574G>A	uc010rip.1	+	4	666	c.574G>A	c.(574-576)GAA>AAA	p.E192K	SPRYD5_uc010riq.1_Missense_Mutation_p.E49K	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	192						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				ATTTCTCCATGAAGAAGAGCA	0.413													11	29					0	0	0.080935	0	0
OR5T2	219464	broad.mit.edu	37	11	56000222	56000222	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:56000222C>T	uc010rjc.1	-	1	440	c.440G>A	c.(439-441)GGA>GAA	p.G147E		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	147	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTCTGTGGTTCCAAAACTACA	0.408													32	78					0	0	0.045705	0	0
OR9I1	219954	broad.mit.edu	37	11	57886068	57886068	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:57886068G>A	uc001nml.1	-	1	849	c.849C>T	c.(847-849)CCC>CCT	p.P283P	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Breast(21;0.0589)				GGTTCAGCATGGGGATGACCA	0.458													42	54					0	0	0.092188	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958119	57958119	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:57958119C>T	uc010rka.1	+	1	157	c.157C>T	c.(157-159)CGT>TGT	p.R53C		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R53H(1)		ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				CCGTGGCGATCGTCGGCTCCA	0.527													18	16					0	0	0.033300	0	0
MS4A10	341116	broad.mit.edu	37	11	60559752	60559752	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:60559752G>A	uc001npz.1	+	4	414	c.318G>A	c.(316-318)GGG>GGA	p.G106G		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	106	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						TCATTTCAGGGATCTTGGCGA	0.448													46	69					0	0	0.048971	0	0
SYT7	9066	broad.mit.edu	37	11	61318936	61318936	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:61318936C>T	uc001nrv.2	-	3	142	c.136_splice	c.e3-1	p.G46_splice	SYT7_uc009ynr.2_Splice_Site_p.G46_splice|SYT7_uc001nrx.1_Splice_Site	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII							cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						AGCGTTTGCCCTGTGGAGATA	0.587													24	47					0	0	0.076483	0	0
FADS3	3995	broad.mit.edu	37	11	61646941	61646941	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:61646941G>A	uc001nsm.2	-	3	518	c.365C>T	c.(364-366)GCC>GTC	p.A122V	FADS3_uc001nsn.2_5'UTR	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	122	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						CATGTCCTCGGCTGCCTGGTG	0.597													8	9					0	0	0.047766	0	0
AHNAK	79026	broad.mit.edu	37	11	62300532	62300532	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:62300532C>A	uc001ntl.2	-	5	1657	c.1357G>T	c.(1357-1359)GTG>TTG	p.V453L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	453					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GGCAGTGTCACATCAATCCCA	0.517													37	52					1.69901e-12	1.72242e-12	0.080422	1	0
GANAB	23193	broad.mit.edu	37	11	62397359	62397359	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:62397359G>A	uc001nub.2	-	14	1697	c.1664C>T	c.(1663-1665)ACC>ATC	p.T555I	GANAB_uc001ntz.2_5'Flank|GANAB_uc001nua.2_Missense_Mutation_p.T577I|GANAB_uc001nuc.2_Missense_Mutation_p.T458I|GANAB_uc010rma.1_Missense_Mutation_p.T463I|GANAB_uc010rmb.1_Missense_Mutation_p.T441I	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	555					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						CTTGAGCATGGTGACCTCAGG	0.532													42	52					0	0	0.045515	0	0
STX5	6811	broad.mit.edu	37	11	62592569	62592569	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:62592569G>A	uc001nvh.2	-	8	772	c.618C>T	c.(616-618)AGC>AGT	p.S206S	STX5_uc010rmi.1_Silent_p.S110S|STX5_uc009yoh.2_RNA|STX5_uc001nvi.2_Silent_p.S152S|STX5_uc010rmj.1_Silent_p.S206S|STX5_uc001nvj.2_Silent_p.S21S	NM_003164	NP_003155	Q13190	STX5_HUMAN	syntaxin 5	206	Cytoplasmic (Potential).				intracellular protein transport|retrograde transport, endosome to Golgi|vesicle targeting	ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|nucleus|SNARE complex	protein N-terminus binding|SNAP receptor activity			ovary(1)|breast(1)	2						GCTCTCTCCGGCTCCTCTGCT	0.582													18	25					0	0	0.038395	0	0
BBS1	582	broad.mit.edu	37	11	66283386	66283386	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:66283386C>T	uc001oij.1	+	7	585	c.573C>T	c.(571-573)TCC>TCT	p.S191S	BBS1_uc001oii.1_Silent_p.S228S|BBS1_uc010rpf.1_RNA|BBS1_uc010rpg.1_Intron|BBS1_uc001oik.1_Silent_p.S115S|BBS1_uc001oil.1_Silent_p.S191S	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	191					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						AACACAAGTCCAACTCCATCA	0.438									Bardet-Biedl_syndrome				27	39					0	0	0.037714	0	0
SAPS3	55291	broad.mit.edu	37	11	68326039	68326039	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:68326039A>C	uc001onw.2	+	8	1004	c.737A>C	c.(736-738)GAA>GCA	p.E246A	SAPS3_uc001onv.2_Missense_Mutation_p.E246A|SAPS3_uc001ony.3_Missense_Mutation_p.E246A|SAPS3_uc001onx.2_Missense_Mutation_p.E246A|SAPS3_uc009ysh.2_Missense_Mutation_p.E246A|SAPS3_uc001onu.2_Missense_Mutation_p.E246A|SAPS3_uc010rqc.1_Intron|SAPS3_uc010rqd.1_5'UTR	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	246					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			CCTAGGCAAGAAATTATAGAG	0.383													19	29					0	0	0.049695	0	0
P4HA3	283208	broad.mit.edu	37	11	74009327	74009327	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:74009327C>T	uc001ouz.2	-	4	690	c.647G>A	c.(646-648)GGA>GAA	p.G216E	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.G216E	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	216						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					CTTCCACTCTCCGTAAGATCC	0.493													42	87					0	0	0.098360	0	0
C11orf30	56946	broad.mit.edu	37	11	76183815	76183815	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:76183815C>T	uc001oxl.2	+	8	1182	c.1039C>T	c.(1039-1041)CCT>TCT	p.P347S	C11orf30_uc009yuj.1_Missense_Mutation_p.P362S|C11orf30_uc010rsa.1_Missense_Mutation_p.P297S|C11orf30_uc001oxm.2_Missense_Mutation_p.P348S|C11orf30_uc010rsb.1_Missense_Mutation_p.P362S|C11orf30_uc010rsc.1_Missense_Mutation_p.P362S|C11orf30_uc001oxn.2_Missense_Mutation_p.P348S|C11orf30_uc010rsd.1_Missense_Mutation_p.P361S	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	347	Ser-rich.|Interaction with BRCA2.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						ATCACCTATTCCTAATACAGT	0.453													31	52					0	0	0.041601	0	0
ODZ4	26011	broad.mit.edu	37	11	78437243	78437243	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:78437243G>A	uc001ozl.3	-	23	3894	c.3431C>T	c.(3430-3432)TCC>TTC	p.S1144F		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1144	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATCTGGGCAGGATTCATATTC	0.468													71	111					0	0	0.048971	0	0
HEPHL1	341208	broad.mit.edu	37	11	93837781	93837781	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:93837781G>A	uc001pep.2	+	16	2927	c.2770G>A	c.(2770-2772)GAA>AAA	p.E924K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	924	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CGTTGATTATGAATTTGCTCT	0.363													27	57					0	0	0.099896	0	0
MMP20	9313	broad.mit.edu	37	11	102480636	102480636	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:102480636C>T	uc001phc.2	-	4	662	c.649G>A	c.(649-651)GGT>AGT	p.G217S		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	217					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		GCATATATACCATTCGTTCCC	0.483													17	35					0	0	0.043863	0	0
PDGFD	80310	broad.mit.edu	37	11	103814348	103814348	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:103814348C>T	uc001phq.2	-	5	976	c.604G>A	c.(604-606)GAT>AAT	p.D202N	PDGFD_uc001php.2_Missense_Mutation_p.D196N	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	202			D -> Y (in a colorectal cancer sample; somatic mutation).		positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity	p.D202Y(1)		upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		AGAGTGGGATCCGTTACTGAT	0.418													7	16					0	0	0.047766	0	0
KBTBD3	143879	broad.mit.edu	37	11	105924005	105924005	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:105924005G>A	uc001pja.2	-	4	2051	c.1411C>T	c.(1411-1413)CCA>TCA	p.P471S	KBTBD3_uc001pjb.2_Missense_Mutation_p.P471S|KBTBD3_uc009yxm.2_Missense_Mutation_p.P392S	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	467	Kelch 4.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		TCAAGTGATGGGTTAAAAGCA	0.368													12	19					0	0	0.080935	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810258	106810258	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:106810258G>A	uc001pjg.1	-	4	1524	c.1134C>T	c.(1132-1134)GTC>GTT	p.V378V	GUCY1A2_uc010rvo.1_Silent_p.V378V|GUCY1A2_uc009yxn.1_Silent_p.V378V	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	378					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GTCGCAGCAGGACCCTTTCAA	0.463													24	56					0	0	0.083992	0	0
C11orf53	341032	broad.mit.edu	37	11	111156452	111156452	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:111156452C>T	uc001plc.2	+	4	531	c.384C>T	c.(382-384)ACC>ACT	p.T128T		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	128											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CCCTGCTGACCTTGCCACCCA	0.637													38	53					0	0	0.104719	0	0
POU2AF1	5450	broad.mit.edu	37	11	111228346	111228346	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:111228346C>T	uc001plg.3	-	4	535	c.280G>A	c.(280-282)GCC>ACC	p.A94T		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	94					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		TGCAGGGTGGCCGGGGTGGGC	0.627			T	BCL6	NHL								21	16					0	0	0.076483	0	0
ALG9	79796	broad.mit.edu	37	11	111711514	111711514	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:111711514G>A	uc001pmb.2	-	11	1136	c.1037C>T	c.(1036-1038)CCG>CTG	p.P346L	ALG9_uc001ply.2_Missense_Mutation_p.P175L|ALG9_uc001plz.2_Missense_Mutation_p.P175L|ALG9_uc010rwm.1_Missense_Mutation_p.P346L|ALG9_uc010rwn.1_Missense_Mutation_p.P300L|ALG9_uc010rwo.1_Missense_Mutation_p.P174L|ALG9_uc009yyh.1_Missense_Mutation_p.P241L	NM_001077690	NP_001071158	Q9H6U8	ALG9_HUMAN	asparagine-linked glycosylation 9 protein	346	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			large_intestine(1)|ovary(1)	2		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.81e-07)|BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|all cancers(92;1.3e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0587)		AAGCCAATACGGGTGGCCTAA	0.343													29	43					0	0	0.037714	0	0
USP28	57646	broad.mit.edu	37	11	113701610	113701610	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:113701610G>A	uc001poh.2	-	9	922	c.889C>T	c.(889-891)CTG>TTG	p.L297L	USP28_uc001pog.2_5'Flank|USP28_uc010rwy.1_Silent_p.L172L|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Silent_p.L297L|USP28_uc010rwz.1_3'UTR	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	297				VQLFYGTFLTEGVRE -> IVIVMSFLKSLSLCL (in Ref. 4; BAA96039).	cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		CCTTCAGTCAGGAAAGTACCA	0.378													22	47					0	0	0.091800	0	0
CEP164	22897	broad.mit.edu	37	11	117279656	117279656	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:117279656C>T	uc001prc.2	+	29	3807	c.3660C>T	c.(3658-3660)ACC>ACT	p.T1220T	CEP164_uc001prb.2_Silent_p.T1223T|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Silent_p.T653T	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1220					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AGGCAGTAACCTTCGACCTCA	0.567													29	38					0	0	0.037714	0	0
MLL	4297	broad.mit.edu	37	11	118355575	118355575	+	Splice_Site	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:118355575A>G	uc001pta.2	+	10	4242	c.4219_splice	c.e10-2	p.E1407_splice	MLL_uc001ptb.2_Splice_Site_p.E1407_splice|MLL_uc001pte.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CTCTCTCCACAGGAGGATTGT	0.408			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								24	29					0	0	0.099896	0	0
PHLDB1	23187	broad.mit.edu	37	11	118495748	118495748	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:118495748C>T	uc001ptr.1	+	6	807	c.454C>T	c.(454-456)CCT>TCT	p.P152S	PHLDB1_uc010ryh.1_Missense_Mutation_p.P152S|PHLDB1_uc001pts.2_Missense_Mutation_p.P152S|PHLDB1_uc001ptt.2_Missense_Mutation_p.P152S|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	152											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GGGCCGAGCCCCTGGGCCCCC	0.612													34	50					0	0	0.069456	0	0
OR8D2	283160	broad.mit.edu	37	11	124189289	124189289	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:124189289C>T	uc010sah.1	-	1	805	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TTCTCTTTTTCCATAGTAGTG	0.428													66	98					0	0	0.048971	0	0
ACRV1	56	broad.mit.edu	37	11	125548100	125548100	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:125548100G>A	uc001qcs.2	-	2	412	c.145C>T	c.(145-147)CCT>TCT	p.P49S	ACRV1_uc001qck.2_Intron|ACRV1_uc001qcl.2_Intron|ACRV1_uc001qcm.2_Intron|ACRV1_uc001qcn.2_Intron|ACRV1_uc001qco.2_Intron|ACRV1_uc001qcp.2_Intron|ACRV1_uc001qcq.2_Intron|ACRV1_uc001qcr.2_Missense_Mutation_p.P49S	NM_001612	NP_001603	P26436	ASPX_HUMAN	acrosomal vesicle protein 1 isoform a precursor	49					multicellular organismal development	acrosomal vesicle					0	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0179)|Lung NSC(97;0.0185)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0713)		GCATCAGAAGGGTTTTCAAGT	0.458													27	40					0	0	0.099896	0	0
SNX19	399979	broad.mit.edu	37	11	130784568	130784568	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:130784568C>T	uc001qgk.3	-	1	1815	c.1267G>A	c.(1267-1269)GAG>AAG	p.E423K	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Missense_Mutation_p.E423K|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	423					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		TCCTCAGCCTCTGCTCCTTCA	0.552													20	29					0	0	0.049695	0	0
Unknown	0	broad.mit.edu	37	12	92116	92116	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:92116C>T	uc010sdi.1	-	2	222	c.194G>A	c.(193-195)TGC>TAC	p.C65Y	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		CAGCGCCAGGCAGTGGTGCAG	0.597													6	14					0	0	0.029380	0	0
A2ML1	144568	broad.mit.edu	37	12	8991724	8991724	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:8991724C>T	uc001quz.3	+	10	1084	c.986C>T	c.(985-987)GCC>GTC	p.A329V		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	173						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GAGGCCAATGCCACTCAGAAT	0.423													17	22					0	0	0.038395	0	0
PRB3	5544	broad.mit.edu	37	12	11420780	11420780	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:11420780G>A	uc001qzs.2	-	3	441	c.403C>T	c.(403-405)CCG>TCG	p.P135S	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	135	4.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GGACGAGGCGGGGGACCTTGG	0.642													73	147					0	0	0.048971	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717515	13717515	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:13717515G>A	uc001rbt.2	-	13	2836	c.2657C>T	c.(2656-2658)TCC>TTC	p.S886F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	886	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCGGTGGGGGAGTTCATTAC	0.567													47	84					0	0	0.048971	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032374	21032374	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:21032374C>T	uc001rek.2	+	10	1266	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	SLCO1B3_uc001rel.2_Silent_p.I380I|SLCO1B3_uc010sil.1_Silent_p.I380I|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.I205I	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	380	Helical; Name=8; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTCTAGGAATCATAACCATTC	0.264													3	18					0	0	0.004672	0	0
SLC38A1	81539	broad.mit.edu	37	12	46623370	46623371	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:46623370_46623371CC>TT	uc001rpa.2	-	4	432_433	c.174_175GG>AA	c.(172-177)TTGGAA>TTAAAA	p.E59K	SLC38A1_uc001rpb.2_Missense_Mutation_p.E59K|SLC38A1_uc001rpc.2_Missense_Mutation_p.E59K|SLC38A1_uc001rpd.2_Missense_Mutation_p.E59K|SLC38A1_uc001rpe.2_Missense_Mutation_p.E59K|SLC38A1_uc010slh.1_Missense_Mutation_p.E32K|SLC38A1_uc009zkj.1_Missense_Mutation_p.E59K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	59	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TTCTTTTTTTCCAAATGGCTGT	0.282													22	58					0	0	0.004672	0	0
COL2A1	1280	broad.mit.edu	37	12	48372117	48372118	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:48372117_48372118CC>TT	uc001rqu.2	-	43	3140_3141	c.2959_2960GG>AA	c.(2959-2961)GGG>AAG	p.G987K	COL2A1_uc001rqt.2_5'Flank|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.G918K	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	987	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	ACCACGTTGCCCAGGCAGACCG	0.634													12	22					0	0	0.004672	0	0
COL2A1	1280	broad.mit.edu	37	12	48387816	48387816	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:48387816G>A	uc001rqu.2	-	13	1012	c.831C>T	c.(829-831)TTC>TTT	p.F277F	COL2A1_uc001rqv.2_Silent_p.F208F	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	277	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGGTTCCTGGGAAACCACGAG	0.542													58	148					0	0	0.048971	0	0
ANP32D	23519	broad.mit.edu	37	12	48866655	48866655	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:48866655G>A	uc010slt.1	+	1	208	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_012404	NP_036536	O95626	AN32D_HUMAN	acidic nuclear phosphoprotein 32D	70	LRR 3.									ovary(1)|central_nervous_system(1)	2						TAAGAAGCTTGAACTAAGCAG	0.368													17	36					0	0	0.028581	0	0
DIP2B	57609	broad.mit.edu	37	12	51126160	51126160	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:51126160C>T	uc001rwv.2	+	32	3978	c.3822C>T	c.(3820-3822)ATC>ATT	p.I1274I	DIP2B_uc009zlt.2_Silent_p.I704I	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	1274						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						CCAGAGGGATCAACCTCTCCT	0.542													28	59					0	0	0.041601	0	0
KRT80	144501	broad.mit.edu	37	12	52574371	52574371	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:52574371G>A	uc001rzx.2	-	4	690	c.592C>T	c.(592-594)CAT>TAT	p.H198Y	KRT80_uc001rzw.2_Missense_Mutation_p.H233Y|KRT80_uc001rzy.2_Missense_Mutation_p.H198Y	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	198	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		TCAGTCCGATGAAGACACTCT	0.572													36	68					0	0	0.080422	0	0
KRT83	3889	broad.mit.edu	37	12	52714852	52714852	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:52714852C>T	uc001saf.2	-	1	331	c.268G>A	c.(268-270)GAG>AAG	p.E90K		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	90	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		AGGAGGCTCTCGTTGACCGAC	0.667													51	133					0	0	0.048971	0	0
KRT75	9119	broad.mit.edu	37	12	52825840	52825840	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:52825840C>T	uc001saj.2	-	3	746	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	242	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TTGTTAATTTCATCTTCGTAC	0.413													10	26					0	0	0.080935	0	0
HNRNPA1	3178	broad.mit.edu	37	12	54676897	54676897	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:54676897A>G	uc001sfl.2	+	8	890	c.786A>G	c.(784-786)GGA>GGG	p.G262G	CBX5_uc001sfk.3_5'Flank|CBX5_uc001sfi.3_5'Flank|HNRNPA1_uc001sfm.2_Intron|HNRNPA1_uc009zng.2_Intron|HNRNPA1_uc009znh.2_Intron|HNRNPA1_uc009zni.2_Intron|HNRNPA1_uc001sfn.2_Intron|HNRNPA1_uc001sfo.3_Intron|HNRNPA1_uc001sfp.1_3'UTR|HNRNPA1_uc009znj.1_Intron	NM_031157	NP_112420	P09651	ROA1_HUMAN	heterogeneous nuclear ribonucleoprotein A1	262	Gly-rich.				interspecies interaction between organisms|mRNA transport|nuclear import	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	nucleotide binding|protein binding|single-stranded DNA binding			skin(2)|ovary(1)	3						GTTACTCTGGAGGAAGCAGAG	0.483													14	15					0	0	0.028581	0	0
GPR84	53831	broad.mit.edu	37	12	54756761	54756761	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:54756761G>A	uc001sfu.2	-	2	965	c.875C>T	c.(874-876)CCA>CTA	p.P292L		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	292	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						AGATGCTTCTGGAGGGCTTTT	0.522													58	92					0	0	0.048971	0	0
OR6C70	390327	broad.mit.edu	37	12	55863067	55863067	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:55863067A>T	uc010spn.1	-	1	856	c.856T>A	c.(856-858)TTT>ATT	p.F286I		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTATAAATAAATGGGTTTAAC	0.343													22	35					0	0	0.055883	0	0
ZBTB39	9880	broad.mit.edu	37	12	57397095	57397095	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:57397095G>A	uc001sml.1	-	2	1693	c.1607C>T	c.(1606-1608)GCC>GTC	p.A536V	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	536					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						GTGGAAGAGGGCGTCTTCCAG	0.552													6	14					0	0	0.029380	0	0
MON2	23041	broad.mit.edu	37	12	62926419	62926419	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:62926419G>A	uc001sre.2	+	12	1993	c.1602G>A	c.(1600-1602)CAG>CAA	p.Q534Q	MON2_uc009zqj.2_Silent_p.Q534Q|MON2_uc010ssl.1_Silent_p.Q462Q|MON2_uc010ssm.1_Silent_p.Q534Q|MON2_uc010ssn.1_Silent_p.Q534Q|MON2_uc001srf.2_Silent_p.Q297Q	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	534					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		AGGATTTACAGTCAACATCAG	0.303													13	32					0	0	0.105934	0	0
MON2	23041	broad.mit.edu	37	12	62931023	62931023	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:62931023C>T	uc001sre.2	+	15	2384	c.1993C>T	c.(1993-1995)CAG>TAG	p.Q665*	MON2_uc009zqj.2_Nonsense_Mutation_p.Q665*|MON2_uc010ssl.1_Nonsense_Mutation_p.Q593*|MON2_uc010ssm.1_Nonsense_Mutation_p.Q642*|MON2_uc010ssn.1_Nonsense_Mutation_p.Q665*|MON2_uc001srf.2_Nonsense_Mutation_p.Q428*	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	665					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		TTTAGCAGTCCAGCCTCAAGG	0.398													16	25					0	0	0.043863	0	0
XPOT	11260	broad.mit.edu	37	12	64833072	64833072	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:64833072C>T	uc001ssb.2	+	23	3208	c.2782C>T	c.(2782-2784)CAA>TAA	p.Q928*		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	928	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		GCCCTCCTTGCAAGTAGCTCC	0.269													8	33					0	0	0.038147	0	0
IRAK3	11213	broad.mit.edu	37	12	66638963	66638963	+	Missense_Mutation	SNP	G	A	A	rs146885838		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:66638963G>A	uc001sth.2	+	11	1337	c.1235G>A	c.(1234-1236)CGG>CAG	p.R412Q	IRAK3_uc010ssy.1_Missense_Mutation_p.R351Q	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	412	Protein kinase.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		CCCTGCCCTCGGAATTTCTCT	0.478													42	62					0	0	0.104719	0	0
BEST3	144453	broad.mit.edu	37	12	70088210	70088210	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:70088210C>T	uc001svg.2	-	3	414	c.187G>A	c.(187-189)GAA>AAA	p.E63K	BEST3_uc001svd.1_Missense_Mutation_p.E63K|BEST3_uc001sve.1_Intron|BEST3_uc010stm.1_Intron|BEST3_uc001svh.2_Intron|BEST3_uc001svi.1_Intron	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	63	Extracellular (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GATAATTTTTCAAAGTAACGT	0.378													8	14					0	0	0.038147	0	0
TMEM19	55266	broad.mit.edu	37	12	72092833	72092833	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:72092833C>T	uc001sws.2	+	5	1374	c.791C>T	c.(790-792)GCT>GTT	p.A264V	TMEM19_uc001swr.1_Missense_Mutation_p.A250V|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	264	Helical; (Potential).					integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		GGTGGTTTAGCTGGATTACTA	0.403													23	56					0	0	0.062417	0	0
TRHDE	29953	broad.mit.edu	37	12	72969286	72969286	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:72969286G>A	uc001sxa.2	+	12	2180	c.2150G>A	c.(2149-2151)CGA>CAA	p.R717Q		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	717	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GTCAGTAACCGAGCGGGCTTG	0.388													22	31					0	0	0.099896	0	0
NAV3	89795	broad.mit.edu	37	12	78400220	78400220	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:78400220C>T	uc001syp.2	+	8	1075	c.902C>T	c.(901-903)TCG>TTG	p.S301L	NAV3_uc001syo.2_Missense_Mutation_p.S301L	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	301						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GGACCTCAATCGTCTTCAGGT	0.458										HNSCC(70;0.22)			22	50					0	0	0.062417	0	0
SYT1	6857	broad.mit.edu	37	12	79747333	79747333	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:79747333G>A	uc001sys.2	+	10	1533	c.862G>A	c.(862-864)GGT>AGT	p.G288S	SYT1_uc001syt.2_Missense_Mutation_p.G288S|SYT1_uc001syu.2_Missense_Mutation_p.G285S|SYT1_uc001syv.2_Missense_Mutation_p.G288S	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	288	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 2.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						ACCTACTGCTGGTAAGCTGAC	0.388													57	82					0	0	0.048971	0	0
TMTC2	160335	broad.mit.edu	37	12	83289650	83289650	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:83289650C>T	uc001szt.2	+	3	1140	c.708C>T	c.(706-708)TCC>TCT	p.S236S	TMTC2_uc001szr.1_Silent_p.S236S|TMTC2_uc001szs.1_Silent_p.S236S|TMTC2_uc010suk.1_5'UTR	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	236	Helical; (Potential).					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						TCTGGGGTTCCTCCCTTTTGG	0.453													49	67					0	0	0.048971	0	0
CEP290	80184	broad.mit.edu	37	12	88452727	88452727	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:88452727A>G	uc001tar.2	-	49	7060	c.6716T>C	c.(6715-6717)GTT>GCT	p.V2239A	CEP290_uc001taq.2_Missense_Mutation_p.V1299A|uc001tas.2_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	2239	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TTCTAGTTGAACTGTCATCTT	0.368													9	24					0	0	0.069234	0	0
C12orf12	196477	broad.mit.edu	37	12	91347528	91347528	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:91347528C>T	uc001tbj.2	-	1	1426	c.992G>A	c.(991-993)GGA>GAA	p.G331E		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	331	Potential.|Glu-rich.									central_nervous_system(1)|pancreas(1)	2						ctcctcctctccctcctccac	0.184													13	23					0	0	0.093190	0	0
ANKS1B	56899	broad.mit.edu	37	12	100166805	100166805	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:100166805C>T	uc001tge.1	-	8	1440	c.1023G>A	c.(1021-1023)AAG>AAA	p.K341K	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Silent_p.K307K	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	341						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		ACGAATAATCCTTTTCTTGAC	0.353													19	34					0	0	0.049695	0	0
ANO4	121601	broad.mit.edu	37	12	101491710	101491710	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:101491710G>A	uc010svm.1	+	21	2565	c.1993G>A	c.(1993-1995)GAA>AAA	p.E665K	ANO4_uc001thw.2_Missense_Mutation_p.E630K|ANO4_uc001thx.2_Missense_Mutation_p.E665K|ANO4_uc001thy.2_Missense_Mutation_p.E185K	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	665	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						taatttcatggaacttggcta	0.299										HNSCC(74;0.22)			15	42					0	0	0.033300	0	0
IGF1	3479	broad.mit.edu	37	12	102811694	102811694	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:102811694C>T	uc001tjp.3	-	4	709	c.490G>A	c.(490-492)GGG>AGG	p.G164R	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Intron|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	164					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						GCTTCTGTCCCCTCCTTCTGT	0.468													98	203					0	0	0.048971	0	0
STAB2	55576	broad.mit.edu	37	12	104122764	104122764	+	Silent	SNP	C	T	T	rs146494560		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:104122764C>T	uc001tjw.2	+	48	5259	c.5073C>T	c.(5071-5073)TCC>TCT	p.S1691S	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1691	Extracellular (Potential).|FAS1 5.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TAGTCATCTCCGTCTCTCAGG	0.363													18	38					0	0	0.033300	0	0
STAB2	55576	broad.mit.edu	37	12	104142922	104142922	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:104142922G>A	uc001tjw.2	+	59	6612	c.6426G>A	c.(6424-6426)AAG>AAA	p.K2142K	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2142	Extracellular (Potential).|EGF-like 17.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCACCTGTAAGATGACAGGCC	0.592													16	34					0	0	0.028581	0	0
CHST11	50515	broad.mit.edu	37	12	104851282	104851282	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:104851282C>G	uc001tkx.1	+	2	384	c.93C>G	c.(91-93)TTC>TTG	p.F31L	CHST11_uc001tky.2_Missense_Mutation_p.F31L	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	31	Helical; Signal-anchor for type II membrane protein; (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						TGGTCATCTTCTATTTCCAAA	0.512													30	66					0	0	0.064281	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105462516	105462516	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:105462516G>A	uc001tlc.2	-	4	702	c.575C>T	c.(574-576)CCT>CTT	p.P192L	ALDH1L2_uc009zuo.2_5'Flank|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	192	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						GATTCCTTCAGGAAAAAGAAA	0.353													16	21					0	0	0.028581	0	0
FOXN4	121643	broad.mit.edu	37	12	109717634	109717634	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:109717634T>C	uc001toe.3	-	10	1501	c.1396A>G	c.(1396-1398)ACC>GCC	p.T466A	FOXN4_uc009zvg.2_Missense_Mutation_p.T263A|FOXN4_uc001tof.3_Missense_Mutation_p.T286A	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	466					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						GAGGCAGGGGTTAGGCCTGAG	0.627													8	19					0	0	0.038147	0	0
UBE3B	89910	broad.mit.edu	37	12	109921395	109921395	+	Silent	SNP	C	T	T	rs141528351	by1000genomes	TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:109921395C>T	uc001top.2	+	3	642	c.39C>T	c.(37-39)ATC>ATT	p.I13I	UBE3B_uc001toq.2_Silent_p.I13I|UBE3B_uc001tol.1_Silent_p.I13I|UBE3B_uc001tom.2_Silent_p.I13I|UBE3B_uc001ton.2_Silent_p.I13I|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Silent_p.I13I|UBE3B_uc001tor.2_Silent_p.I13I	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	13					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						CATGGTTCATCGATAGAGCCC	0.527													47	67					0	0	0.048971	0	0
C12orf51	283450	broad.mit.edu	37	12	112608218	112608218	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:112608218G>A	uc009zwc.2	-	62	10723	c.10705C>T	c.(10705-10707)CGA>TGA	p.R3569*		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TTCAGCACTCGATTCATCACG	0.597													21	36					0	0	0.055883	0	0
HIP1R	9026	broad.mit.edu	37	12	123339876	123339876	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:123339876C>T	uc001udj.1	+	11	976	c.917C>T	c.(916-918)CCC>CTC	p.P306L	HIP1R_uc001udg.1_Missense_Mutation_p.P294L|HIP1R_uc001udi.1_Missense_Mutation_p.P306L|HIP1R_uc001udk.1_5'Flank	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	306					receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		GTGGTGATCCCCGAGGAGGCC	0.687													5	8					0	0	0.014758	0	0
DNAH10	196385	broad.mit.edu	37	12	124332555	124332555	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:124332555C>T	uc001uft.3	+	32	5533	c.5508C>T	c.(5506-5508)ACC>ACT	p.T1836T		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1836	AAA 1 (By similarity).|GPAGTGKT motif.|ATP (Potential).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CAGCAGGAACCGGCAAAACCG	0.557													48	80					0	0	0.048971	0	0
NCOR2	9612	broad.mit.edu	37	12	124821308	124821309	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:124821308_124821309GG>AA	uc010tay.1	-	40	6291_6292	c.6135_6136CC>TT	c.(6133-6138)CTCCGT>CTTTGT	p.R2046C	NCOR2_uc010taz.1_Missense_Mutation_p.R2030C|NCOR2_uc010tax.1_Missense_Mutation_p.R157C	NM_006312	NP_006303	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 1	2047					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CCCAGAGAACGGAGTTCCAGTT	0.599													17	60					0	0	0.004672	0	0
RIMBP2	23504	broad.mit.edu	37	12	130921582	130921582	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr12:130921582C>T	uc001uil.2	-	10	2024	c.1860G>A	c.(1858-1860)AGG>AGA	p.R620R	RIMBP2_uc001uim.2_Silent_p.R528R|RIMBP2_uc001uin.1_Silent_p.R279R	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	620	Pro-rich.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CCTCATCCATCCTGGCGTGGG	0.667													15	18					0	0	0.024245	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20207928	20207928	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:20207928C>T	uc001umh.2	+	1	49	c.40C>T	c.(40-42)CCT>TCT	p.P14S	MPHOSPH8_uc001umf.1_Missense_Mutation_p.P14S|MPHOSPH8_uc001umg.2_Missense_Mutation_p.P14S	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	14					cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		GACCGCAGTCCCTGTGTCAGC	0.627													12	5					0	0	0.020292	0	0
SACS	26278	broad.mit.edu	37	13	23908553	23908553	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:23908553G>A	uc001uon.2	-	10	10051	c.9462C>T	c.(9460-9462)CCC>CCT	p.P3154P	SACS_uc001uoo.2_Silent_p.P3007P|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3154					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGATGAGAAGGGGCAATCCCT	0.348													9	16					0	0	0.058154	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24466079	24466079	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:24466079C>T	uc010tcw.1	-	3	351	c.351G>A	c.(349-351)GAG>GAA	p.E117E	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_3'UTR|PCOTH_uc009zzx.2_3'UTR|C1QTNF9B_uc010tcv.1_Intron|C1QTNF9B_uc001uoz.1_Intron|C1QTNF9B_uc010tcx.1_Silent_p.E117E	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	117	Collagen-like 2.					collagen					0						GAGGCCCAGTCTCTCCTCGGA	0.597													15	51					0	0	0.028581	0	0
PARP4	143	broad.mit.edu	37	13	25029327	25029328	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:25029327_25029328GG>AA	uc001upl.2	-	22	2691_2692	c.2585_2586CC>TT	c.(2584-2586)CCC>CTT	p.P862L	PARP4_uc010tdc.1_Missense_Mutation_p.P862L	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	862					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CATCGAGATCGGGTTGAAAGAC	0.475													29	45					0	0	0.004672	0	0
WASF3	10810	broad.mit.edu	37	13	27241696	27241696	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:27241696C>T	uc001uqv.2	+	5	536	c.311C>T	c.(310-312)TCC>TTC	p.S104F	WASF3_uc001uqw.2_Missense_Mutation_p.S104F	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	104					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		TTCAAAAGTTCCACAGTCCAA	0.373													20	38					0	0	0.055883	0	0
FLT3	2322	broad.mit.edu	37	13	28608542	28608542	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:28608542G>A	uc001urw.2	-	13	1682	c.1600C>T	c.(1600-1602)CCC>TCC	p.P534S	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.P534S	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	534	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AAAGGGAAGGGGCCTGCAACA	0.393			Mis|O		AML|ALL								6	20					0	0	0.029380	0	0
AKAP11	11215	broad.mit.edu	37	13	42875615	42875615	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:42875615A>C	uc001uys.1	+	8	2908	c.2733A>C	c.(2731-2733)TTA>TTC	p.L911F		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	911					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		CTAAATCTTTAAAGGAGAAAA	0.378													13	22					0	0	0.105934	0	0
ARL11	115761	broad.mit.edu	37	13	50204908	50204908	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:50204908G>A	uc001vdf.1	+	2	471	c.325G>A	c.(325-327)GAC>AAC	p.D109N		NM_138450	NP_612459	Q969Q4	ARL11_HUMAN	ADP-ribosylation factor-like 11	109					small GTPase mediated signal transduction	intracellular	GTP binding|protein binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.119)|Kidney(9;0.169)	GBM - Glioblastoma multiforme(99;1.67e-09)		AGTCCTGAACGACCCCAACAT	0.567													40	55					0	0	0.111260	0	0
SCEL	8796	broad.mit.edu	37	13	78184223	78184223	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:78184223G>A	uc001vki.2	+	22	1489	c.1319G>A	c.(1318-1320)AGA>AAA	p.R440K	SCEL_uc001vkj.2_Missense_Mutation_p.R420K|SCEL_uc010thx.1_Missense_Mutation_p.R398K	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	440	16 X approximate tandem repeats.|10.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		ACTCCTGAAAGAAACAGAACT	0.338													17	27					0	0	0.069288	0	0
DZIP1	22873	broad.mit.edu	37	13	96246218	96246218	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:96246218C>T	uc001vmk.2	-	16	2512	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K	DZIP1_uc001vmj.2_Missense_Mutation_p.E30K|DZIP1_uc001vml.2_Missense_Mutation_p.E535K	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	554					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CCCAAGGTTTCCAGTTTCTCC	0.348													31	52					0	0	0.074837	0	0
RAP2A	5911	broad.mit.edu	37	13	98116528	98116528	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:98116528C>T	uc001vnd.2	+	2	634	c.384C>T	c.(382-384)TCC>TCT	p.S128S		NM_021033	NP_066361	P10114	RAP2A_HUMAN	RAP2A, member of RAS oncogene family precursor	128					actin cytoskeleton reorganization|cellular protein localization|establishment of protein localization|positive regulation of protein autophosphorylation|Rap protein signal transduction|regulation of dendrite morphogenesis|regulation of JNK cascade	recycling endosome membrane	GTP binding|GTPase activity|protein binding			central_nervous_system(1)	1	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.166)			AAGTATCGTCCAGCGAAGGCA	0.453													31	34					0	0	0.041601	0	0
RNF113B	140432	broad.mit.edu	37	13	98829181	98829181	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:98829181C>T	uc001vnk.2	-	1	341	c.310G>A	c.(310-312)GGG>AGG	p.G104R	FARP1_uc001vnh.2_Intron|FARP1_uc001vni.2_Intron|FARP1_uc001vnj.2_Intron	NM_178861	NP_849192	Q8IZP6	R113B_HUMAN	ring finger protein 113B	104							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.13)			TCCTCTGGCCCCACAGGCTTC	0.687													11	25					0	0	0.024245	0	0
PCCA	5095	broad.mit.edu	37	13	101182352	101182352	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:101182352G>A	uc001voo.2	+	24	2157	c.2119G>A	c.(2119-2121)GTG>ATG	p.V707M	PCCA_uc010aga.2_Missense_Mutation_p.V681M|PCCA_uc010tiz.1_Missense_Mutation_p.V660M|PCCA_uc001vop.2_RNA	NM_000282	NP_000273	P05165	PCCA_HUMAN	propionyl-Coenzyme A carboxylase, alpha	707	Biotinyl-binding.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|enzyme binding|metal ion binding|propionyl-CoA carboxylase activity			skin(2)	2	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Biotin(DB00121)	AAAATTCAAGGTGAAATCTGT	0.453													9	26					0	0	0.069234	0	0
TPP2	7174	broad.mit.edu	37	13	103286311	103286311	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:103286311C>T	uc001vpi.3	+	11	1359	c.1256C>T	c.(1255-1257)GCC>GTC	p.A419V		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	419					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCTGACGGGGCCCTTGGTGTG	0.468													14	57					0	0	0.033300	0	0
C13orf39	196541	broad.mit.edu	37	13	103338770	103338770	+	Nonsense_Mutation	SNP	G	A	A	rs141134679		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:103338770G>A	uc001vpj.2	-	4	412	c.406C>T	c.(406-408)CAA>TAA	p.Q136*	C13orf39_uc001vpk.2_Nonsense_Mutation_p.Q136*	NM_001010977	NP_001010977	Q5VZV1	MT21C_HUMAN	hypothetical protein LOC196541	136							methyltransferase activity				0						GCTGTGACTTGAGCTCCTAAG	0.408													10	24					0	0	0.093190	0	0
SLC10A2	6555	broad.mit.edu	37	13	103701714	103701714	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:103701714C>T	uc001vpy.3	-	5	1441	c.844G>A	c.(844-846)GAG>AAG	p.E282K		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	282	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ACATTGAGCTCCTCAGGAGTG	0.473													34	44					0	0	0.059317	0	0
MYO16	23026	broad.mit.edu	37	13	109438085	109438085	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:109438085G>A	uc001vqt.1	+	5	670	c.544G>A	c.(544-546)GAA>AAA	p.E182K	MYO16_uc010agk.1_Missense_Mutation_p.E204K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	182	ANK 4.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTATCTGGATGAAAATGGTAG	0.373													11	27					0	0	0.080935	0	0
MCF2L	23263	broad.mit.edu	37	13	113739293	113739293	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr13:113739293T>G	uc001vsu.2	+	19	2342	c.2320T>G	c.(2320-2322)TTC>GTC	p.F774V	MCF2L_uc001vsq.2_Missense_Mutation_p.F774V|MCF2L_uc010tjr.1_Missense_Mutation_p.F717V|MCF2L_uc001vsr.2_Missense_Mutation_p.F721V|MCF2L_uc001vss.3_Missense_Mutation_p.F715V|MCF2L_uc010tjs.1_Missense_Mutation_p.F715V|MCF2L_uc001vst.1_Missense_Mutation_p.F679V	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	747	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CTGCCCGTTTTTCCAGGTTTG	0.512													23	39					0	0	0.091800	0	0
POTEG	404785	broad.mit.edu	37	14	19553804	19553804	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:19553804G>A	uc001vuz.1	+	1	440	c.388G>A	c.(388-390)GAG>AAG	p.E130K	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	130										ovary(1)	1						CGCTTTCATGGAGCCGAGGTA	0.592													26	99					0	0	0.086207	0	0
OR4K5	79317	broad.mit.edu	37	14	20389492	20389492	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:20389492C>T	uc010tkw.1	+	1	727	c.727C>T	c.(727-729)CAT>TAT	p.H243Y		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTGGCTTCCCATATTGCAGT	0.403													51	37					0	0	0.048971	0	0
SALL2	6297	broad.mit.edu	37	14	21993005	21993005	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:21993005G>A	uc001wbe.2	-	2	1139	c.857C>T	c.(856-858)CCT>CTT	p.P286L	SALL2_uc010tly.1_Missense_Mutation_p.P284L|SALL2_uc010tlz.1_Missense_Mutation_p.P149L|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.P151L|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	286							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		AGCAGAGAAAGGATGCTGTGA	0.522													19	16					0	0	0.043863	0	0
MYH7	4625	broad.mit.edu	37	14	23894021	23894021	+	Missense_Mutation	SNP	G	A	A	rs145417343		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:23894021G>A	uc001wjx.2	-	22	2742	c.2636C>T	c.(2635-2637)TCC>TTC	p.S879F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	879	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTGCAGCAGGGACACCATCTT	0.592													18	13					0	0	0.043863	0	0
KCNH5	27133	broad.mit.edu	37	14	63417186	63417186	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:63417186C>T	uc001xfx.2	-	7	1085	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	KCNH5_uc001xfy.2_Missense_Mutation_p.G345E|KCNH5_uc001xfz.1_Missense_Mutation_p.G287E|KCNH5_uc001xga.2_Missense_Mutation_p.G287E	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	345	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GACTGCTGCTCCATATTCTAG	0.507													23	15					0	0	0.076483	0	0
SYNE2	23224	broad.mit.edu	37	14	64494361	64494361	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:64494361C>T	uc001xgm.2	+	43	6794	c.6564C>T	c.(6562-6564)TTC>TTT	p.F2188F	SYNE2_uc001xgl.2_Silent_p.F2188F	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2188	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATAAGAAATTCCTCAAGAAAG	0.398													27	15					0	0	0.030593	0	0
SPTB	6710	broad.mit.edu	37	14	65262076	65262076	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:65262076G>A	uc001xht.2	-	11	1677	c.1623C>T	c.(1621-1623)ATC>ATT	p.I541I	SPTB_uc001xhr.2_Silent_p.I541I|SPTB_uc001xhs.2_Silent_p.I541I|SPTB_uc001xhu.2_Silent_p.I541I	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	541	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCATCCAGTCGATGCTGTGCA	0.637													12	7					0	0	0.080935	0	0
ADAM21	8747	broad.mit.edu	37	14	70924300	70924300	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:70924300C>T	uc001xmd.2	+	1	84	c.84C>T	c.(82-84)TAC>TAT	p.Y28Y		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	28					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TTTCCGGCTACTGTCAGGCTG	0.537													32	32					0	0	0.045705	0	0
ADAM21	8747	broad.mit.edu	37	14	70925587	70925587	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:70925587C>T	uc001xmd.2	+	1	1371	c.1371C>T	c.(1369-1371)TTC>TTT	p.F457F		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	457	Disintegrin.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		ACTGCAAGTTCATGCCATCAG	0.488													26	6					0	0	0.099896	0	0
DCAF4	26094	broad.mit.edu	37	14	73409708	73409708	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:73409708C>T	uc001xng.2	+	6	658	c.438C>T	c.(436-438)GCC>GCT	p.A146A	DCAF4_uc001xnj.2_Silent_p.A146A|DCAF4_uc010ttr.1_Silent_p.A124A|DCAF4_uc001xnh.2_Silent_p.A46A|DCAF4_uc010tts.1_Intron|DCAF4_uc010ttt.1_5'UTR|DCAF4_uc001xni.2_Intron|DCAF4_uc001xnk.2_Silent_p.A146A	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	146						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GCAGTTTAGCCCACGAGCTGC	0.567													6	7					0	0	0.021553	0	0
LTBP2	4053	broad.mit.edu	37	14	75022393	75022393	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:75022393G>A	uc001xqa.2	-	4	1221	c.834C>T	c.(832-834)ACC>ACT	p.T278T		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	278					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGCCACTCAGGGTCCTGTGGA	0.627													19	8					0	0	0.049695	0	0
KIAA0317	9870	broad.mit.edu	37	14	75130447	75130447	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:75130447A>G	uc001xqb.2	-	20	2953	c.2448T>C	c.(2446-2448)GGT>GGC	p.G816G		NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	816	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		AGCCCTCGCAACCCTCGCTGA	0.547													37	39					0	0	0.039052	0	0
DIO2	1734	broad.mit.edu	37	14	80669111	80669111	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:80669111G>A	uc010tvq.1	-	4	1145	c.743C>T	c.(742-744)TCC>TTC	p.S248F	DIO2_uc010tvp.1_Missense_Mutation_p.S284F|DIO2_uc001xut.2_RNA|DIO2_uc010asx.2_3'UTR|DIO2_uc010tvr.1_Missense_Mutation_p.S248F|DIO2_uc010asy.2_3'UTR	NM_000793	NP_000784	Q92813	IOD2_HUMAN	deiodinase, iodothyronine, type II isoform a	248					hormone biosynthetic process|selenocysteine incorporation|thyroid hormone generation	integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|ubiquitin protein ligase binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0281)		AAGGTTGTAGGAGAAGGGGCC	0.438													12	11					0	0	0.093190	0	0
STON2	85439	broad.mit.edu	37	14	81744869	81744869	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:81744869G>A	uc010tvu.1	-	4	987	c.786C>T	c.(784-786)ATC>ATT	p.I262I	STON2_uc001xvk.1_Silent_p.I262I|STON2_uc010tvt.1_Silent_p.I59I	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	262					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		GTACATCTGGGATCACAGATG	0.458													33	29					0	0	0.045705	0	0
PPP4R4	57718	broad.mit.edu	37	14	94712008	94712008	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:94712008G>A	uc001ycs.1	+	13	1582	c.1428_splice	c.e13+1	p.K476_splice		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1							cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AGAAAATAAGGTAAACTTCAT	0.234													31	21					0	0	0.050027	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754895	94754895	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:94754895C>T	uc001yct.2	-	3	1186	c.720G>A	c.(718-720)GGG>GGA	p.G240G	SERPINA10_uc001ycu.3_Silent_p.G240G	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	240					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TCAACCATTTCCCTGAACAAG	0.448													22	17					0	0	0.055883	0	0
SERPINA11	256394	broad.mit.edu	37	14	94908971	94908971	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:94908971C>T	uc001ydd.1	-	5	1301	c.1241G>A	c.(1240-1242)GGA>GAA	p.G414E		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	414					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GACAACTTTTCCCAGGAAGAG	0.537													5	2					0	0	0.029380	0	0
SERPINA4	5267	broad.mit.edu	37	14	95029831	95029831	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:95029831C>T	uc001ydk.2	+	2	78	c.12C>T	c.(10-12)ATC>ATT	p.I4I	SERPINA4_uc010avd.2_Silent_p.I41I|SERPINA4_uc001ydl.2_Silent_p.I4I	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	4					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		TGCATCTTATCGACTACCTGC	0.557													34	23					0	0	0.069456	0	0
ADAM6	8755	broad.mit.edu	37	14	106236286	106236286	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:106236286G>A	uc010tyt.1	-	3616		c.57658C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GTTTTGGGGGGAAGAGGAAGA	0.597													36	15					0	0	0.059317	0	0
ADAM6	8755	broad.mit.edu	37	14	106445042	106445042	+	Splice_Site	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:106445042A>T	uc010tyt.1	-	2043		c.38838_splice	c.e2043+1							Parts of antibodies, mostly variable regions.												0						CCCAGGAGAAATTCCCCACGT	0.557													3	3					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106815823	106815823	+	RNA	SNP	T	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:106815823T>A	uc010tyt.1	-	342		c.13336A>T								Parts of antibodies, mostly variable regions.												0						AATCGGCCCTTCACGGAGTCT	0.522													47	33					0	0	0.048971	0	0
ADAM6	8755	broad.mit.edu	37	14	107062149	107062149	+	RNA	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr14:107062149C>G	uc010tyt.1	-	131		c.6446G>C								Parts of antibodies, mostly variable regions.												0						AATACACGGCCGTGTCCGCGG	0.577													50	35					0	0	0.048971	0	0
LOC646214	646214	broad.mit.edu	37	15	21937160	21937160	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:21937160G>A	uc010tzj.1	-	1		c.3580C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CCCTAGCAAGGTATTCCACGA	0.413													13	50					0	0	0.020292	0	0
GOLGA8E	390535	broad.mit.edu	37	15	23443566	23443566	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:23443566C>T	uc001yvu.2	+	13	1641	c.652C>T	c.(652-654)CCT>TCT	p.P218S		NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E											skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;5.21e-07)|Epithelial(43;5.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.000614)		CATGGCTCTCCCTGGGGAAGG	0.597													11	5					0	0	0.080935	0	0
TRPM1	4308	broad.mit.edu	37	15	31327763	31327763	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:31327763C>T	uc001zfm.2	-	20	2748	c.2620G>A	c.(2620-2622)GAG>AAG	p.E874K	TRPM1_uc010azy.2_Missense_Mutation_p.E781K|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	874	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CGTATCTTCTCTAACGCCAGG	0.537													22	37					0	0	0.076483	0	0
TRPM1	4308	broad.mit.edu	37	15	31334343	31334343	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:31334343G>A	uc001zfm.2	-	16	1960	c.1832C>T	c.(1831-1833)CCC>CTC	p.P611L	TRPM1_uc010azy.2_Missense_Mutation_p.P518L|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	611	Cytoplasmic (Potential).		P -> H (in CSNB1C).		cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CTCGTGGAAGGGATACTGGAA	0.478													8	17					0	0	0.069234	0	0
OTUD7A	161725	broad.mit.edu	37	15	31822943	31822943	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:31822943C>T	uc001zfq.2	-	4	712	c.619G>A	c.(619-621)GAT>AAT	p.D207N	OTUD7A_uc001zfr.2_Missense_Mutation_p.D207N	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	207	OTU.|Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		CAGTTCCCATCCCCTGTTGTG	0.537													17	46					0	0	0.043863	0	0
ATPBD4	89978	broad.mit.edu	37	15	35830580	35830580	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:35830580G>A	uc001zja.2	-	3	269	c.207C>T	c.(205-207)CTC>CTT	p.L69L	ATPBD4_uc001ziz.2_Silent_p.L53L|ATPBD4_uc001zjb.2_Silent_p.L69L	NM_080650	NP_542381	Q7L8W6	ATBD4_HUMAN	ATP binding domain 4 isoform 1	69											0		all_epithelial(112;2.11e-09)|Lung NSC(122;2.38e-08)|all_lung(180;3.65e-07)		all cancers(64;9.9e-19)|GBM - Glioblastoma multiforme(113;2.01e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		TTCGGCGATAGAGGGGAAGAG	0.453													47	56					0	0	0.039052	0	0
DNAJC17	55192	broad.mit.edu	37	15	41065983	41065983	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:41065983G>A	uc001zms.1	-	10	745	c.734C>T	c.(733-735)TCC>TTC	p.S245F	DNAJC17_uc010bbz.1_RNA	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	245	RRM.				protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		CTCCAACCAGGAAATCTTCAG	0.597													13	19					0	0	0.020292	0	0
PPP1R14D	54866	broad.mit.edu	37	15	41120753	41120753	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:41120753C>T	uc001zmy.2	-	1	155	c.87G>A	c.(85-87)AGG>AGA	p.R29R	PPP1R14D_uc001zmz.2_Silent_p.R29R	NM_017726	NP_060196	Q9NXH3	PP14D_HUMAN	protein phosphatase 1, regulatory subunit 14D	29					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity				0		all_cancers(109;6.29e-14)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.88e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		ATGTCCTTCTCCTCCCAGAAG	0.567													12	47					0	0	0.024245	0	0
EXD1	161829	broad.mit.edu	37	15	41483761	41483761	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:41483761G>A	uc001znk.2	-	8	760	c.569C>T	c.(568-570)TCC>TTC	p.S190F	EXD1_uc001znj.2_5'Flank|EXD1_uc010ucv.1_Missense_Mutation_p.S248F	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	190					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CGTTTCCATGGAAAACTGAAG	0.378													20	28					0	0	0.083992	0	0
RTF1	23168	broad.mit.edu	37	15	41749994	41749994	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:41749994C>T	uc001zny.2	+	4	594	c.582C>T	c.(580-582)GCC>GCT	p.A194A		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	194	Glu-rich.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		AAGACAGGGCCCGTCTGGAAC	0.478													46	89					0	0	0.048971	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42103103	42103104	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:42103103_42103104CC>TT	uc001zok.3	+	4	515_516	c.229_230CC>TT	c.(229-231)CCC>TTC	p.P77F	MAPKBP1_uc001zoj.3_Missense_Mutation_p.P77F|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.P77F|MAPKBP1_uc010udb.1_5'UTR|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_5'Flank	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	77										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		GTTGTTCAATCCCCGGAAACAC	0.559													27	53					0	0	0.004672	0	0
CDAN1	146059	broad.mit.edu	37	15	43028124	43028124	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:43028124G>A	uc001zql.2	-	3	839	c.722C>T	c.(721-723)CCC>CTC	p.P241L	CDAN1_uc001zqk.2_5'Flank|CDAN1_uc010bcx.1_5'Flank|uc001zqm.2_5'Flank	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	241						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		GCACCCTGGGGGAAGGCCAAG	0.622													17	41					0	0	0.033300	0	0
TP53BP1	7158	broad.mit.edu	37	15	43748500	43748500	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:43748500G>A	uc001zrs.2	-	12	2439	c.2291C>T	c.(2290-2292)CCA>CTA	p.P764L	TP53BP1_uc010udp.1_Missense_Mutation_p.P764L|TP53BP1_uc001zrq.3_Missense_Mutation_p.P769L|TP53BP1_uc001zrr.3_Missense_Mutation_p.P769L|TP53BP1_uc010udq.1_Missense_Mutation_p.P769L	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	764					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TCTGGGAGATGGCTCTTTCAC	0.448								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					27	28					0	0	0.108266	0	0
DUOXA2	405753	broad.mit.edu	37	15	45410043	45410043	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:45410043T>G	uc001zuo.2	+	6	1179	c.899T>G	c.(898-900)CTC>CGC	p.L300R	DUOXA2_uc010beb.2_RNA|DUOXA1_uc010uem.1_Intron|DUOXA1_uc001zup.2_Intron|DUOXA1_uc010bec.2_Intron	NM_207581	NP_997464	Q1HG44	DOXA2_HUMAN	dual oxidase activator 2	300	Cytoplasmic (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane					0		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;2.88e-18)|GBM - Glioblastoma multiforme(94;3.95e-07)|COAD - Colon adenocarcinoma(120;0.0652)|Colorectal(133;0.0659)		CCTCTTATCCTCGGCGACCCA	0.597											OREG0023102	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	70					0	0	0.086207	0	0
MYO5A	4644	broad.mit.edu	37	15	52681552	52681552	+	Silent	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:52681552T>C	uc002aby.2	-	13	1795	c.1551A>G	c.(1549-1551)AAA>AAG	p.K517K	MYO5A_uc002abx.3_Silent_p.K517K|MYO5A_uc010uge.1_Silent_p.K386K	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	517	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		CATCTGTGCCTTTAGGCATCT	0.353													16	24					0	0	0.033300	0	0
UNC13C	440279	broad.mit.edu	37	15	54799319	54799319	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:54799319T>C	uc002ack.2	+	21	5306	c.5306T>C	c.(5305-5307)ATC>ACC	p.I1769T		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1769	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCTTAGACTATCAATAAAGTG	0.313													5	8					0	0	0.029380	0	0
CGNL1	84952	broad.mit.edu	37	15	57731085	57731085	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:57731085C>T	uc002aeg.2	+	2	964	c.888C>T	c.(886-888)TCC>TCT	p.S296S	CGNL1_uc010bfw.2_Silent_p.S296S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	296	Poly-Ser.|Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CCCGGAGGTCCTCCTCGTCAT	0.552													7	17					0	0	0.038147	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58256130	58256130	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:58256130G>A	uc002aex.2	-	9	1097	c.1039C>T	c.(1039-1041)CGC>TGC	p.R347C	ALDH1A2_uc002aey.2_Missense_Mutation_p.R309C|ALDH1A2_uc010ugv.1_Missense_Mutation_p.R326C|ALDH1A2_uc010ugw.1_Missense_Mutation_p.R318C|ALDH1A2_uc002aew.2_Missense_Mutation_p.R251C	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	347					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CCCACTACGCGCCTCTTGGCC	0.527													34	61					0	0	0.092188	0	0
CILP	8483	broad.mit.edu	37	15	65490813	65490813	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:65490813G>A	uc002aon.2	-	9	1992	c.1811C>T	c.(1810-1812)CCA>CTA	p.P604L		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	604					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						ACTCCTGGATGGAATCTCCAG	0.532													41	72					0	0	0.092188	0	0
ITGA11	22801	broad.mit.edu	37	15	68650907	68650907	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:68650907C>T	uc002ari.2	-	6	576	c.489G>A	c.(487-489)ATG>ATA	p.M163I	ITGA11_uc010bib.2_Missense_Mutation_p.M163I	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	163	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity	p.M163I(1)		kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGACGATGTCCATGTAGGTCT	0.502													11	17					0	0	0.093190	0	0
MYO9A	4649	broad.mit.edu	37	15	72192259	72192259	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:72192259A>G	uc002atl.3	-	24	3712	c.3239T>C	c.(3238-3240)CTT>CCT	p.L1080P	MYO9A_uc010biq.2_Missense_Mutation_p.L700P|MYO9A_uc002atn.1_Missense_Mutation_p.L1061P|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1080	IQ 3.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						AGCTTGGAGAAGAGCAGCTGC	0.488													8	25					0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	15	76074431	76074431	+	Missense_Mutation	SNP	C	T	T	rs149323153	by1000genomes	TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:76074431C>T	uc010umm.1	+	8	610	c.533C>T	c.(532-534)TCG>TTG	p.S178L	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CTCCAGTCCTCGAGCTGCAGA	0.547													6	32					0	0	0.029380	0	0
ACSBG1	23205	broad.mit.edu	37	15	78474955	78474955	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:78474955C>T	uc002bdh.2	-	7	803	c.747G>A	c.(745-747)ATG>ATA	p.M249I	ACSBG1_uc010umw.1_Missense_Mutation_p.M245I|ACSBG1_uc010umx.1_Missense_Mutation_p.M7I|ACSBG1_uc010umy.1_Missense_Mutation_p.M142I	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	249					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						TGAATTCCTCCATCTGTAGCC	0.607													15	31					0	0	0.024245	0	0
TMC3	342125	broad.mit.edu	37	15	81635619	81635619	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:81635619C>T	uc002bgo.1	-	15	1715	c.1715G>A	c.(1714-1716)TGG>TAG	p.W572*	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Nonsense_Mutation_p.W572*	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	572	Helical; (Potential).					integral to membrane				ovary(1)|liver(1)	2						TGATACCTACCAAATCATTCC	0.348													23	40					0	0	0.076483	0	0
TMC3	342125	broad.mit.edu	37	15	81641879	81641879	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:81641879C>T	uc002bgo.1	-	11	1113	c.1113G>A	c.(1111-1113)ATG>ATA	p.M371I	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.M371I	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	371	Helical; (Potential).					integral to membrane				ovary(1)|liver(1)	2						ATGGTGCTATCATGGTGACGA	0.572													7	14					0	0	0.029380	0	0
AKAP13	11214	broad.mit.edu	37	15	86259046	86259047	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:86259046_86259047CC>TT	uc002blv.1	+	20	5797_5798	c.5627_5628CC>TT	c.(5626-5628)TCC>TTT	p.S1876F	AKAP13_uc002blu.1_Missense_Mutation_p.S1880F|AKAP13_uc010bnf.1_Missense_Mutation_p.S497F|AKAP13_uc002blw.1_Missense_Mutation_p.S343F|AKAP13_uc002blx.1_Missense_Mutation_p.S121F	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1876					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CGTCCTCGGTCCGCAGTCCTCC	0.53													20	45					0	0	0.004672	0	0
AKAP13	11214	broad.mit.edu	37	15	86266551	86266551	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:86266551G>A	uc002blv.1	+	26	6915	c.6745G>A	c.(6745-6747)GAG>AAG	p.E2249K	AKAP13_uc002blu.1_Missense_Mutation_p.E2253K|AKAP13_uc010bnf.1_Missense_Mutation_p.E870K|AKAP13_uc002blw.1_Missense_Mutation_p.E714K|AKAP13_uc002blx.1_Missense_Mutation_p.E494K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2249	Interaction with ESR1.|PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						AAGGTTGAAAGGTAAGGCTTG	0.423													18	25					0	0	0.062417	0	0
ACAN	176	broad.mit.edu	37	15	89400378	89400378	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:89400378G>A	uc010upo.1	+	12	4936	c.4562G>A	c.(4561-4563)GGA>GAA	p.G1521E	ACAN_uc010upp.1_Missense_Mutation_p.G1521E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1521					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TCTGCTTCTGGAGTAGAGGAC	0.512													19	28					0	0	0.055883	0	0
HAPLN3	145864	broad.mit.edu	37	15	89422470	89422470	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr15:89422470C>T	uc002bnc.2	-	4	652	c.524G>A	c.(523-525)GGG>GAG	p.G175E	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.G237E	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	175	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					CTGGTAGCGCCCGTTGGGGGA	0.657											OREG0023445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	28					0	0	0.062417	0	0
WFIKKN1	117166	broad.mit.edu	37	16	681328	681328	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:681328G>A	uc002cht.1	+	1	317	c.75G>A	c.(73-75)GGG>GGA	p.G25G	WFIKKN1_uc002chs.1_3'UTR	NM_053284	NP_444514	Q96NZ8	WFKN1_HUMAN	WAP, follistatin/kazal, immunoglobulin, kunitz	25						extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity				0		Hepatocellular(780;0.00335)				TGCTGCCAGGGCTGGGGAGCC	0.726													8	16					0	0	0.038147	0	0
MSLN	10232	broad.mit.edu	37	16	816999	816999	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:816999C>T	uc002cjw.1	+	14	1563	c.1512C>T	c.(1510-1512)ATC>ATT	p.I504I	MSLN_uc002cjt.1_Silent_p.I496I|MSLN_uc002cju.1_Silent_p.I496I|MSLN_uc010brd.1_Silent_p.I495I|MSLN_uc002cjv.1_Silent_p.I496I|MSLN_uc002cjx.1_Silent_p.I496I|MSLN_uc002cjy.1_Silent_p.I161I	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	504					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TCGTGAAGATCCAGTCCTTCC	0.622													15	46					0	0	0.033300	0	0
OR2C1	4993	broad.mit.edu	37	16	3406001	3406001	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:3406001C>T	uc002cuw.1	+	1	113	c.61C>T	c.(61-63)CCC>TCC	p.P21S		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATCAGACCATCCCCAGCTGGA	0.493													27	54					0	0	0.108266	0	0
ANKS3	124401	broad.mit.edu	37	16	4777098	4777098	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:4777098A>C	uc002cxj.1	-	4	546	c.251T>G	c.(250-252)ATC>AGC	p.I84S	ANKS3_uc002cxi.1_Missense_Mutation_p.I11S|ANKS3_uc002cxk.2_Intron|ANKS3_uc002cxl.2_5'UTR|ANKS3_uc010uxs.1_Missense_Mutation_p.I11S|ANKS3_uc002cxm.2_Intron	NM_133450	NP_597707	Q6ZW76	ANKS3_HUMAN	ankyrin repeat and sterile alpha motif domain	84	ANK 2.										0						CAGGTGCACGATTGTGTCGTG	0.542													17	29					0	0	0.038395	0	0
UBN1	29855	broad.mit.edu	37	16	4924977	4924977	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:4924977C>T	uc002cyb.2	+	15	2905	c.2566C>T	c.(2566-2568)CCC>TCC	p.P856S	UBN1_uc010uxw.1_Missense_Mutation_p.P856S|UBN1_uc002cyc.2_Missense_Mutation_p.P856S	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	856					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						GGGCTTCCATCCCTCTGCACC	0.592													17	49					0	0	0.033300	0	0
SEC14L5	9717	broad.mit.edu	37	16	5057485	5057485	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:5057485G>A	uc002cye.2	+	13	1750	c.1570G>A	c.(1570-1572)GAG>AAG	p.E524K		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	524	GOLD.					integral to membrane|intracellular	transporter activity				0						AGCCCCCCACGAGGTGCCAGG	0.498													15	19					0	0	0.028581	0	0
SEC14L5	9717	broad.mit.edu	37	16	5058631	5058631	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:5058631G>A	uc002cye.2	+	14	1962	c.1782G>A	c.(1780-1782)CGG>CGA	p.R594R		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	594	GOLD.					integral to membrane|intracellular	transporter activity				0						TTGTCTGCCGGGAGGGGGAGA	0.453													27	57					0	0	0.030593	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858299	9858299	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:9858299C>T	uc002czo.3	-	13	3650	c.3102G>A	c.(3100-3102)AGG>AGA	p.R1034R	GRIN2A_uc010uym.1_Silent_p.R1034R|GRIN2A_uc010uyn.1_Silent_p.R877R|GRIN2A_uc002czr.3_Silent_p.R1034R	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1034	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTGCCTCATCCCTCTGGGAGA	0.517													62	121					0	0	0.048971	0	0
ABCC6	368	broad.mit.edu	37	16	16256936	16256936	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:16256936G>A	uc002den.3	-	24	3457	c.3420C>T	c.(3418-3420)TTC>TTT	p.F1140F	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1140	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCTGGGTTCGGAATGCCCGGA	0.587													31	65					0	0	0.045705	0	0
TMC7	79905	broad.mit.edu	37	16	19020617	19020617	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:19020617G>A	uc002dfq.2	+	2	321	c.191G>A	c.(190-192)GGA>GAA	p.G64E	TMC7_uc010vao.1_Missense_Mutation_p.G64E|TMC7_uc002dfp.2_Missense_Mutation_p.G64E|TMC7_uc010vap.1_5'UTR	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	64	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						AAGCAAAGCGGAACTTTGCTA	0.502													17	29					0	0	0.028581	0	0
ACSM3	6296	broad.mit.edu	37	16	20797429	20797429	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:20797429G>A	uc002dhr.2	+	9	1360	c.1173G>A	c.(1171-1173)ATG>ATA	p.M391I	ACSM3_uc002dhq.2_Missense_Mutation_p.M391I|ACSM3_uc010vba.1_Missense_Mutation_p.M420I|ERI2_uc002dhs.2_Intron	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	391					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TTAAGGGAATGAAAATTAAAC	0.338													19	25					0	0	0.069288	0	0
DNAH3	55567	broad.mit.edu	37	16	20944554	20944554	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:20944554G>A	uc010vbe.1	-	62	12273	c.12273C>T	c.(12271-12273)TCC>TCT	p.S4091S	DNAH3_uc010vbd.1_Silent_p.S1526S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	4091					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GAAGCTCAATGGAGAGGACAT	0.512													57	93					0	0	0.048971	0	0
DNAH3	55567	broad.mit.edu	37	16	20998665	20998665	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:20998665C>T	uc010vbe.1	-	47	6988	c.6988G>A	c.(6988-6990)GAA>AAA	p.E2330K	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2330					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GAGGTGGTTTCCTTCACCATG	0.423													27	54					0	0	0.091800	0	0
SCNN1B	6338	broad.mit.edu	37	16	23391419	23391419	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:23391419G>A	uc002dln.2	+	12	1647	c.1471G>A	c.(1471-1473)GGA>AGA	p.G491R		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	491	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	CTGCAGGAAGGGAATTGTCAA	0.368													15	59					0	0	0.028581	0	0
PALB2	79728	broad.mit.edu	37	16	23641356	23641356	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:23641356G>A	uc002dlx.1	-	5	2319	c.2119C>T	c.(2119-2121)CCT>TCT	p.P707S		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	707					double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		GTATTTAAAGGAGTATAAAGT	0.458			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				34	48					0	0	0.059317	0	0
LCMT1	51451	broad.mit.edu	37	16	25172472	25172473	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:25172472_25172473CC>TT	uc002dnx.1	+	6	674_675	c.516_517CC>TT	c.(514-519)CTCCGA>CTTTGA	p.R173*	LCMT1_uc002dny.1_Intron|LCMT1_uc002dnz.1_Nonsense_Mutation_p.R73*|LCMT1_uc002doa.1_Intron	NM_016309	NP_057393	Q9UIC8	LCMT1_HUMAN	leucine carboxyl methyltransferase 1 isoform a	173							protein binding|protein C-terminal carboxyl O-methyltransferase activity|S-adenosylmethionine-dependent methyltransferase activity				0				GBM - Glioblastoma multiforme(48;0.0336)	L-Leucine(DB00149)	GAGCAGATCTCCGAGACCTGTC	0.351													6	18					0	0	0.004672	0	0
TAOK2	9344	broad.mit.edu	37	16	29997949	29997949	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:29997949C>T	uc002dva.1	+	16	3139	c.2356C>T	c.(2356-2358)CAA>TAA	p.Q786*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Nonsense_Mutation_p.Q793*|TAOK2_uc002dvd.1_Nonsense_Mutation_p.Q613*	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	786					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						AGTCCTGGACCAAAGAATGCT	0.607													39	47					0	0	0.069456	0	0
SRCAP	10847	broad.mit.edu	37	16	30736335	30736335	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:30736335G>A	uc002dze.1	+	25	5975	c.5590G>A	c.(5590-5592)GCT>ACT	p.A1864T	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.A1659T|SRCAP_uc010bzz.1_Missense_Mutation_p.A1434T	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1864	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TCCCTCCACTGCTACCTCGTT	0.602													34	86					0	0	0.064281	0	0
ITGAX	3687	broad.mit.edu	37	16	31391335	31391335	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:31391335C>T	uc002ebu.1	+	26	3076	c.3009C>T	c.(3007-3009)ATC>ATT	p.I1003I	ITGAX_uc002ebt.2_Silent_p.I1003I	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	1003	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAGAGAAAATCGCACCCCCAG	0.577													18	30					0	0	0.049695	0	0
BRD7	29117	broad.mit.edu	37	16	50368640	50368640	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:50368640G>A	uc002egf.1	-	8	936	c.869C>T	c.(868-870)CCC>CTC	p.P290L	BRD7_uc002ege.1_Missense_Mutation_p.P290L	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	290					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				TTCTTTGCTGGGACTCTTGAA	0.473													56	109					0	0	0.048971	0	0
CES1	1066	broad.mit.edu	37	16	55844564	55844564	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:55844564C>T	uc002eim.2	-	11	1288	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	CES1_uc010ccf.2_Missense_Mutation_p.E69K|CES1_uc002eil.2_Missense_Mutation_p.E395K|CES1_uc002ein.2_Missense_Mutation_p.E393K	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	394					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	GGAATCAGTTCCTTAGCAATG	0.483													45	93					0	0	0.039052	0	0
GPR114	221188	broad.mit.edu	37	16	57601437	57601437	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:57601437C>T	uc002elx.3	+	8	840	c.755C>T	c.(754-756)TCC>TTC	p.S252F	GPR114_uc010vhr.1_Missense_Mutation_p.S252F|GPR114_uc002ely.2_Missense_Mutation_p.S252F	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	252	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						ACGTACATCTCCCTCGTGGGC	0.612													11	24					0	0	0.069234	0	0
GPR97	222487	broad.mit.edu	37	16	57719772	57719772	+	Silent	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:57719772T>C	uc002emh.2	+	11	1577	c.1474T>C	c.(1474-1476)TTG>CTG	p.L492L	GPR97_uc010vhv.1_Silent_p.L372L|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_Silent_p.L100L	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	492	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						GACATGGGGGTTGGCCATCTT	0.617													34	46					0	0	0.064281	0	0
CCDC135	84229	broad.mit.edu	37	16	57741474	57741474	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:57741474G>A	uc002emi.2	+	7	1050	c.961G>A	c.(961-963)GAC>AAC	p.D321N	CCDC135_uc002emj.2_Missense_Mutation_p.D321N|CCDC135_uc002emk.2_Missense_Mutation_p.D256N	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	321						cytoplasm				central_nervous_system(1)	1						CTTCTTCATCGACCCATTCAC	0.572													20	41					0	0	0.055883	0	0
PDP2	57546	broad.mit.edu	37	16	66919776	66919776	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:66919776A>G	uc002eqk.1	+	2	1751	c.1589A>G	c.(1588-1590)TAA>TGA	p.*530*		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	530					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		AAGGGGGGTTAAGAATCTCCC	0.398													22	33					0	0	0.083992	0	0
ZFP90	146198	broad.mit.edu	37	16	68597303	68597303	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:68597303C>T	uc010cff.2	+	5	905	c.613C>T	c.(613-615)CTT>TTT	p.L205F	ZFP90_uc002ewb.2_Silent_p.F10F|ZFP90_uc002ewc.2_Silent_p.F10F|ZFP90_uc002ewd.2_Missense_Mutation_p.L205F|ZFP90_uc002ewe.2_Missense_Mutation_p.L205F	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	205					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		GAATAATATTCTTGCAAAAAA	0.358													23	29					0	0	0.069288	0	0
CDH3	1001	broad.mit.edu	37	16	68714894	68714894	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:68714894C>T	uc002ewf.2	+	8	2023	c.891C>T	c.(889-891)ACC>ACT	p.T297T	CDH3_uc010vli.1_Silent_p.T242T	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	297	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		ACACACTGACCATCCAGGCCA	0.567													28	56					0	0	0.041601	0	0
TMCO7	79613	broad.mit.edu	37	16	68934432	68934432	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:68934432G>A	uc002ewi.3	+	8	1485	c.1473G>A	c.(1471-1473)CAG>CAA	p.Q491Q		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	491						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		TTACTAAGCAGAGTGTGTCTC	0.363													17	75					0	0	0.038395	0	0
PDPR	55066	broad.mit.edu	37	16	70166106	70166106	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:70166106C>T	uc002eyf.1	+	9	1857	c.900C>T	c.(898-900)ATC>ATT	p.I300I	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Silent_p.I200I|PDPR_uc002eyg.1_Silent_p.I28I	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	300					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		AGGGTGGCATCCTGTCTGGGG	0.473													15	45					0	0	0.033300	0	0
COG4	25839	broad.mit.edu	37	16	70515342	70515342	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:70515342G>A	uc002ezc.2	-	18	2166	c.2155C>T	c.(2155-2157)CTT>TTT	p.L719F	COG4_uc002eza.2_Missense_Mutation_p.L56F|COG4_uc002ezb.2_Missense_Mutation_p.L175F|COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Missense_Mutation_p.L698F|COG4_uc002eze.2_Missense_Mutation_p.L413F	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	715	D domain.				Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				ACCGTGGTAAGGTAGGCAATG	0.597													44	80					0	0	0.111260	0	0
HYDIN	54768	broad.mit.edu	37	16	70972585	70972586	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:70972585_70972586GG>AA	uc002ezr.2	-	44	7051_7052	c.6923_6924CC>TT	c.(6922-6924)GCC>GTT	p.A2308V		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2309	Potential.									ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCTCAGTCAGGGCATCATATTC	0.564													6	21					0	0	0.004672	0	0
PHLPP2	23035	broad.mit.edu	37	16	71683303	71683303	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:71683303G>A	uc002fax.2	-	18	3468	c.3462C>T	c.(3460-3462)CCC>CCT	p.P1154P	PHLPP2_uc002fav.2_Intron|PHLPP2_uc010cgf.2_Silent_p.P1087P	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	1154						cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						CCCCCTCAACGGGCTGGTCAT	0.562													28	31					0	0	0.034045	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77398272	77398272	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:77398272G>A	uc002ffc.3	-	5	1204	c.785C>T	c.(784-786)CCC>CTC	p.P262L	ADAMTS18_uc010chc.1_5'Flank|ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	262					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GGGAGGCTTGGGAGCATCTAC	0.448													15	25					0	0	0.024245	0	0
PKD1L2	114780	broad.mit.edu	37	16	81150981	81150981	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:81150981C>T	uc002fgh.1	-	41	6768	c.6768G>A	c.(6766-6768)AGG>AGA	p.R2256R	PKD1L2_uc002fgf.1_Silent_p.R56R|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2256	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTGACTCCTCCCTGTGGTTCC	0.642													15	18					0	0	0.020292	0	0
PKD1L2	114780	broad.mit.edu	37	16	81197309	81197309	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:81197309G>A	uc002fgh.1	-	21	3373	c.3373C>T	c.(3373-3375)CCA>TCA	p.P1125S	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1125	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTTCGGGCTGGAAAGGGGCTC	0.532													3	7					0	0	0.004672	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033438	82033438	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:82033438G>A	uc002fgu.2	-	3	588	c.460C>T	c.(460-462)CGG>TGG	p.R154W		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	154					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GACTTTGTCCGAGAGTAGTGA	0.532													29	48					0	0	0.041601	0	0
ZC3H18	124245	broad.mit.edu	37	16	88696903	88696903	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:88696903C>T	uc002fky.2	+	17	2777	c.2577C>T	c.(2575-2577)GAC>GAT	p.D859D	ZC3H18_uc010voz.1_Silent_p.D883D|ZC3H18_uc010chw.2_RNA|ZC3H18_uc002fkz.2_Silent_p.D129D	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	859						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GTTCTCGGGACCGGAAGTCAG	0.622													9	23					0	0	0.047766	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347138	89347138	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:89347138G>A	uc002fmx.1	-	9	6273	c.5812C>T	c.(5812-5814)CCC>TCC	p.P1938S	ANKRD11_uc002fmy.1_Missense_Mutation_p.P1938S|ANKRD11_uc002fnc.1_Missense_Mutation_p.P1938S|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.P1895S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1938	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GCGCTGAAGGGACCCTCGTCC	0.697													21	47					0	0	0.062417	0	0
ZZEF1	23140	broad.mit.edu	37	17	3970484	3970484	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:3970484G>A	uc002fxe.2	-	27	4192	c.4128C>T	c.(4126-4128)TCC>TCT	p.S1376S	ZZEF1_uc002fxi.2_5'Flank|ZZEF1_uc002fxj.1_5'UTR	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1376							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CATCTGCCAAGGAATAAACCT	0.398													11	5					0	0	0.093190	0	0
DNAH2	146754	broad.mit.edu	37	17	7669791	7669791	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:7669791C>T	uc002giu.1	+	21	3681	c.3667C>T	c.(3667-3669)CTG>TTG	p.L1223L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1223	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCTTCAGAACCTGGAGAAGGT	0.587													11	9					0	0	0.093190	0	0
SPDYE4	388333	broad.mit.edu	37	17	8658918	8658918	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:8658918G>A	uc010cnz.1	-	4	582	c.405C>T	c.(403-405)CTC>CTT	p.L135L		NM_001128076	NP_001121548	A6NLX3	SPDE4_HUMAN	speedy homolog E4	135											0						CCATAGCCAGGAGATACTGAT	0.522													34	29					0	0	0.080422	0	0
MYO15A	51168	broad.mit.edu	37	17	18022891	18022891	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:18022891C>T	uc010vxh.1	+	2	1115	c.777C>T	c.(775-777)CCC>CCT	p.P259P		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	259	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGCAGGAACCCTACCTGGCGG	0.652													17	14					0	0	0.038395	0	0
MYO15A	51168	broad.mit.edu	37	17	18025674	18025674	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:18025674C>T	uc010vxh.1	+	2	3898	c.3560C>T	c.(3559-3561)TCC>TTC	p.S1187F		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1187	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GCCTGCCTGTCCCTTAGGGGC	0.637													21	12					0	0	0.062417	0	0
CCDC144C	348254	broad.mit.edu	37	17	20261303	20261303	+	RNA	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:20261303G>T	uc010cqy.1	+	9		c.2146G>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						TAAACAAATGGAAAATATGGT	0.318													18	14					9.57634e-11	9.69875e-11	0.083992	1	0
Unknown	0	broad.mit.edu	37	17	20805843	20805843	+	RNA	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:20805843C>T	uc002gyg.1	+	4		c.1027C>T			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		TTGCAGATTTCCTGACAAAGT	0.512													5	6					0	0	0.029380	0	0
SLC6A4	6532	broad.mit.edu	37	17	28548746	28548746	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:28548746C>T	uc002hey.3	-	3	775	c.231G>A	c.(229-231)GGG>GGA	p.G77G		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	77	Cytoplasmic (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	TCTCCCGTTCCCCTTGATGAA	0.562													50	76					0	0	0.048971	0	0
AMAC1	146861	broad.mit.edu	37	17	33521270	33521270	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:33521270G>A	uc002hjd.2	-	1	143	c.57C>T	c.(55-57)CCC>CCT	p.P19P		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	19						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		GTGGAGCGGAGGGCGGCGATG	0.662													21	33					0	0	0.055883	0	0
Unknown	0	broad.mit.edu	37	17	34235898	34235898	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:34235898G>A	uc010ctx.1	-	1		c.1056C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TCTGTAGTAGGTTCTGTAGTT	0.463													15	27					0	0	0.033300	0	0
ACACA	31	broad.mit.edu	37	17	35633959	35633959	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:35633959C>T	uc002hnm.2	-	7	849	c.658G>A	c.(658-660)GAA>AAA	p.E220K	ACACA_uc002hnk.2_Missense_Mutation_p.E142K|ACACA_uc002hnl.2_Missense_Mutation_p.E162K|ACACA_uc002hnn.2_Missense_Mutation_p.E220K|ACACA_uc002hno.2_Missense_Mutation_p.E257K|ACACA_uc010cuz.2_Missense_Mutation_p.E220K|ACACA_uc002hnq.2_Missense_Mutation_p.E142K	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	220	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	AAGAGAAGTTCCGGTAGTTTG	0.418													47	104					0	0	0.048971	0	0
PLXDC1	57125	broad.mit.edu	37	17	37265584	37265584	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:37265584C>T	uc002hrg.2	-	3	528	c.316G>A	c.(316-318)GAA>AAA	p.E106K	PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	106	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						ACCCACAGTTCCCGGCTGTGG	0.602													17	21					0	0	0.028581	0	0
THRA	7067	broad.mit.edu	37	17	38244584	38244584	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:38244584C>A	uc002htw.2	+	8	1296	c.813C>A	c.(811-813)AGC>AGA	p.S271R	THRA_uc010cwp.1_Missense_Mutation_p.S271R|THRA_uc002htv.2_Missense_Mutation_p.S271R|THRA_uc002htx.2_Missense_Mutation_p.S271R	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	271	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	ACCCTGAGAGCGACACCCTGA	0.622													28	50					2.4375e-19	2.48085e-19	0.034045	1	0
KRT40	125115	broad.mit.edu	37	17	39138698	39138698	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:39138698G>A	uc010cxh.1	-	5	709	c.548C>T	c.(547-549)TCC>TTC	p.S183F	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	183	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				CTGGCGAAGGGACAGTTCACT	0.527													28	52					0	0	0.050027	0	0
KLHL10	317719	broad.mit.edu	37	17	40004299	40004299	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:40004299G>C	uc010cxr.2	+	5	1709	c.1567G>C	c.(1567-1569)GAG>CAG	p.E523Q	KLHL10_uc010wfw.1_Missense_Mutation_p.E435Q	NM_152467	NP_689680	Q6JEL2	KLH10_HUMAN	kelch-like 10	523	Kelch 5.					cytoplasm				ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		Breast(137;0.000162)				TTTTGGCATCGAGGTGGTGGA	0.473													31	59					0	0	0.059317	0	0
NAGLU	4669	broad.mit.edu	37	17	40695668	40695668	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:40695668C>T	uc002hzv.2	+	6	1984	c.1644C>T	c.(1642-1644)CCC>CCT	p.P548P		NM_000263	NP_000254	P54802	ANAG_HUMAN	alpha-N-acetylglucosaminidase precursor	548						lysosome	alpha-N-acetylglucosaminidase activity				0		all_cancers(22;1.58e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)	N-Acetyl-D-glucosamine(DB00141)	CATCTGCTCCCTCCCTGGCCA	0.622													8	16					0	0	0.069234	0	0
KIF18B	146909	broad.mit.edu	37	17	43003834	43003834	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:43003834G>A	uc010wji.1	-	15	2510	c.2409C>T	c.(2407-2409)GCC>GCT	p.A803A	KIF18B_uc002iht.2_Silent_p.A812A|KIF18B_uc010wjh.1_Silent_p.A800A	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				TGGGGAGGCGGGCGATGCGGC	0.617													4	6					0	0	0.009096	0	0
PLCD3	113026	broad.mit.edu	37	17	43196356	43196356	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:43196356G>A	uc002iib.2	-	5	853	c.739C>T	c.(739-741)CTG>TTG	p.L247L		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	247	EF-hand 2.				intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	AGCCGCCGCAGGAACTCCTCG	0.627													8	11					0	0	0.038147	0	0
ACBD4	79777	broad.mit.edu	37	17	43214795	43214795	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:43214795C>T	uc002iid.2	+	6	820	c.476C>T	c.(475-477)CCC>CTC	p.P159L	ACBD4_uc010wjj.1_Missense_Mutation_p.P159L|ACBD4_uc002iie.2_Missense_Mutation_p.P159L|ACBD4_uc002iif.2_Missense_Mutation_p.P159L|ACBD4_uc002iic.2_Missense_Mutation_p.P159L|ACBD4_uc010dae.2_Missense_Mutation_p.P81L	NM_001135707	NP_001129179	Q8NC06	ACBD4_HUMAN	acyl-Coenzyme A binding domain containing 4	159							fatty-acyl-CoA binding			ovary(1)|kidney(1)	2						CCCTGCCTCCCCAAGGAACCG	0.627													12	21					0	0	0.020292	0	0
CACNA1G	8913	broad.mit.edu	37	17	48668888	48668888	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:48668888C>T	uc002irk.1	+	11	2918	c.2546C>T	c.(2545-2547)CCG>CTG	p.P849L	CACNA1G_uc002iri.1_Missense_Mutation_p.P849L|CACNA1G_uc002irj.1_Missense_Mutation_p.P849L|CACNA1G_uc002irl.1_Missense_Mutation_p.P849L|CACNA1G_uc002irm.1_Missense_Mutation_p.P849L|CACNA1G_uc002irn.1_Missense_Mutation_p.P849L|CACNA1G_uc002iro.1_Missense_Mutation_p.P849L|CACNA1G_uc002irp.1_Missense_Mutation_p.P849L|CACNA1G_uc002irq.1_Missense_Mutation_p.P849L|CACNA1G_uc002irr.1_Missense_Mutation_p.P849L|CACNA1G_uc002irs.1_Missense_Mutation_p.P849L|CACNA1G_uc002irt.1_Missense_Mutation_p.P849L|CACNA1G_uc002irv.1_Missense_Mutation_p.P849L|CACNA1G_uc002irw.1_Missense_Mutation_p.P849L|CACNA1G_uc002iru.1_Missense_Mutation_p.P849L|CACNA1G_uc002irx.1_Missense_Mutation_p.P762L|CACNA1G_uc002iry.1_Missense_Mutation_p.P762L|CACNA1G_uc002irz.1_Missense_Mutation_p.P762L|CACNA1G_uc002isa.1_Missense_Mutation_p.P762L|CACNA1G_uc002isb.1_Missense_Mutation_p.P762L|CACNA1G_uc002isc.1_Missense_Mutation_p.P762L|CACNA1G_uc002isd.1_Missense_Mutation_p.P762L|CACNA1G_uc002ise.1_Missense_Mutation_p.P762L|CACNA1G_uc002isf.1_Missense_Mutation_p.P762L|CACNA1G_uc002isg.1_Missense_Mutation_p.P762L|CACNA1G_uc002ish.1_Missense_Mutation_p.P762L|CACNA1G_uc002isi.1_Missense_Mutation_p.P762L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	849	Helical; Name=S4 of repeat II; (Potential).|II.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CGCTTCCTGCCGGCGCTGCAG	0.627													7	19					0	0	0.029380	0	0
ABCC3	8714	broad.mit.edu	37	17	48755144	48755144	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:48755144G>A	uc002isl.2	+	24	3498	c.3418G>A	c.(3418-3420)GAA>AAA	p.E1140K	ABCC3_uc002isn.2_5'Flank	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1140	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GAAGCGGCTGGAATCAGTCAG	0.572													90	167					0	0	0.048971	0	0
KIF2B	84643	broad.mit.edu	37	17	51900535	51900535	+	Silent	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:51900535G>C	uc002iua.2	+	1	297	c.141G>C	c.(139-141)ACG>ACC	p.T47T		NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	47					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CTGTGGTCACGGAGATCAACA	0.527													32	42					0	0	0.045705	0	0
C17orf47	284083	broad.mit.edu	37	17	56620779	56620779	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:56620779G>A	uc002iwq.1	-	1	905	c.769C>T	c.(769-771)CCT>TCT	p.P257S	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	257										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGTTTTGAAGGAATTGGACCG	0.473													55	65					0	0	0.048971	0	0
HEATR6	63897	broad.mit.edu	37	17	58153570	58153570	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:58153570C>G	uc002iyk.1	-	2	265	c.248G>C	c.(247-249)TGC>TCC	p.C83S	HEATR6_uc010wos.1_5'Flank	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	83							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			TACCAGTCGGCAAGCCTGGAC	0.378													18	23					0	0	0.043863	0	0
MRC2	9902	broad.mit.edu	37	17	60766297	60766297	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:60766297G>A	uc002jad.2	+	23	3712	c.3310G>A	c.(3310-3312)GGC>AGC	p.G1104S	MRC2_uc002jae.2_Missense_Mutation_p.G175S|MRC2_uc002jaf.2_Missense_Mutation_p.M49I	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1104	Extracellular (Potential).|C-type lectin 6.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGACCCATGGCTTCATCTG	0.662													13	36					0	0	0.028581	0	0
NOL11	25926	broad.mit.edu	37	17	65720284	65720284	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:65720284G>A	uc002jgd.1	+	6	642	c.639G>A	c.(637-639)CGG>CGA	p.R213R	NOL11_uc010wql.1_Silent_p.R31R|NOL11_uc010deu.1_5'UTR	NM_015462	NP_056277	Q9H8H0	NOL11_HUMAN	nucleolar protein 11	213						nucleolus					0	all_cancers(12;1.54e-10)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0518)|COAD - Colon adenocarcinoma(4;0.0977)|LUSC - Lung squamous cell carcinoma(166;0.24)			CTGTAGATCGGAAATTCATCT	0.308													21	21					0	0	0.069288	0	0
ABCA6	23460	broad.mit.edu	37	17	67083609	67083609	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:67083609G>A	uc002jhw.1	-	29	3879	c.3704C>T	c.(3703-3705)TCC>TTC	p.S1235F		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1235					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ACTTTGGGGGGAAATTCTATG	0.378													108	97					0	0	0.048971	0	0
UNK	85451	broad.mit.edu	37	17	73805957	73805958	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:73805957_73805958CC>GT	uc002jpm.2	+	3	449_450	c.449_450CC>GT	c.(448-450)TCC>TGT	p.S150C		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	74							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGCCGCCGGTCCATCCGCCGTC	0.624													10	35					0	0	0.004672	0	0
ACOX1	51	broad.mit.edu	37	17	73945826	73945826	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:73945826G>A	uc002jqf.2	-	10	1741	c.1451C>T	c.(1450-1452)ACC>ATC	p.T484I	ACOX1_uc010wsq.1_Missense_Mutation_p.T446I|ACOX1_uc002jqe.2_Missense_Mutation_p.T484I|ACOX1_uc010wsr.1_Missense_Mutation_p.T416I	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	484					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						ATATGCTTCGGTTAGGCTTTC	0.562													45	55					0	0	0.048971	0	0
MGAT5B	146664	broad.mit.edu	37	17	74922716	74922716	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:74922716C>T	uc002jti.2	+	9	1331	c.1228C>T	c.(1228-1230)CCT>TCT	p.P410S	MGAT5B_uc002jth.2_Missense_Mutation_p.P399S	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	399	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						CGGGACGGAACCTGCGTACAA	0.617													24	27					0	0	0.083992	0	0
SLC38A10	124565	broad.mit.edu	37	17	79254472	79254472	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:79254472T>C	uc002jzz.1	-	6	938	c.563A>G	c.(562-564)TAC>TGC	p.Y188C	SLC38A10_uc002jzy.1_Missense_Mutation_p.Y106C|SLC38A10_uc002kab.2_Missense_Mutation_p.Y188C	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	188					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CCAGCGGACGTAGCTGACCCG	0.637													18	15					0	0	0.038395	0	0
CCDC57	284001	broad.mit.edu	37	17	80151902	80151902	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr17:80151902G>A	uc002kdz.1	-	6	1087	c.732C>T	c.(730-732)AGC>AGT	p.S244S	CCDC57_uc002kdx.1_Silent_p.S244S	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	244	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			CCCCGGCTCGGCTCTGGAGCT	0.672													27	23					0	0	0.091800	0	0
LRRC30	339291	broad.mit.edu	37	18	7231534	7231534	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:7231534C>G	uc010wzk.1	+	1	398	c.398C>G	c.(397-399)CCG>CGG	p.P133R		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	133	LRR 3.									ovary(1)|liver(1)	2						ACAGAGGTGCCGGCCGAGCTG	0.592													10	21					0	0	0.058154	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478943	14478943	+	RNA	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:14478943C>T	uc010xai.1	-	3		c.621G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						GCTGTAAATTCGTTACATTTA	0.363													15	16					0	0	0.024245	0	0
LOC644669	644669	broad.mit.edu	37	18	15323347	15323347	+	RNA	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:15323347T>C	uc002ktd.1	-	3		c.112A>G				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						CCAATAAAAGTGGTGTGTGGC	0.303													3	5					0	0	0.009096	0	0
LAMA3	3909	broad.mit.edu	37	18	21338364	21338364	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:21338364C>T	uc002kuq.2	+	7	1038	c.952C>T	c.(952-954)CGG>TGG	p.R318W	LAMA3_uc010dlv.1_Missense_Mutation_p.R318W|LAMA3_uc002kur.2_Missense_Mutation_p.R318W	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	318	Laminin EGF-like 1.|Domain V.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCCAGGTTTCGGTGTGAATG	0.557													18	20					0	0	0.055883	0	0
CDH2	1000	broad.mit.edu	37	18	25593740	25593740	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:25593740G>A	uc002kwg.2	-	3	765	c.306C>T	c.(304-306)TTC>TTT	p.F102F	CDH2_uc010xbn.1_Silent_p.F71F	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	102					adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						CATATATCAGGAACTTGGCAT	0.458													45	83					0	0	0.045515	0	0
DSG3	1830	broad.mit.edu	37	18	29039837	29039837	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:29039837G>A	uc002kws.2	+	6	656	c.547G>A	c.(547-549)GAT>AAT	p.D183N		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	183	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AAATGCCACAGATGCAGATGA	0.363													9	21					0	0	0.093190	0	0
MYO5B	4645	broad.mit.edu	37	18	47421349	47421349	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:47421349C>T	uc002leb.2	-	22	3295	c.3007G>A	c.(3007-3009)GAG>AAG	p.E1003K	MYO5B_uc002lea.2_Missense_Mutation_p.E144K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1003	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGGGCGTCCTCCAAGATCTTG	0.652													31	47					0	0	0.045705	0	0
DCC	1630	broad.mit.edu	37	18	50705382	50705383	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:50705382_50705383GA>AT	uc002lfe.1	+	9	2056_2057	c.1469_1470GA>AT	c.(1468-1470)GGA>GAT	p.G490D	DCC_uc010xdr.1_Missense_Mutation_p.G338D|DCC_uc010dpf.1_Missense_Mutation_p.G145D	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	490	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTCACTGTGGGAAACCTGAAGC	0.48													15	38					0	0	0.004672	0	0
PIGN	23556	broad.mit.edu	37	18	59763177	59763177	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:59763177G>A	uc002lii.3	-	24	2532	c.2084C>T	c.(2083-2085)TCC>TTC	p.S695F	PIGN_uc002lij.3_Missense_Mutation_p.S695F	NM_176787	NP_789744	O95427	PIGN_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	695	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5		Colorectal(73;0.187)				CACAACCAAGGAAGAGGCTGC	0.348													8	12					0	0	0.047766	0	0
SERPINB8	5271	broad.mit.edu	37	18	61654341	61654341	+	Silent	SNP	C	T	T	rs146858814		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:61654341C>T	uc002ljv.2	+	7	1123	c.954C>T	c.(952-954)TTC>TTT	p.F318F	SERPINB8_uc002lju.2_Silent_p.F318F|SERPINB8_uc010xex.1_Silent_p.F136F	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	318					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				ACAAGTGCTTCGTGGAGGTCA	0.527													13	25					0	0	0.093190	0	0
ZNF407	55628	broad.mit.edu	37	18	72775621	72775621	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:72775621C>T	uc002llw.2	+	8	6001	c.5944C>T	c.(5944-5946)CCC>TCC	p.P1982S		NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1982					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		TGGAGTCGCTCCCCCCGAGGC	0.622													8	14					0	0	0.047766	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999391	72999391	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:72999391A>T	uc002lly.2	+	2	2457	c.1894A>T	c.(1894-1896)AAT>TAT	p.N632Y		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	677						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		AGCAAAAGAGAATAAAGATTT	0.567													16	39					0	0	0.038395	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999824	72999824	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr18:72999824T>G	uc002lly.2	+	2	2890	c.2327T>G	c.(2326-2328)GTG>GGG	p.V776G		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	821						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		AAGCCGCTGGTGTCCAGCGTG	0.582													20	35					0	0	0.076483	0	0
MED16	10025	broad.mit.edu	37	19	880116	880117	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:880116_880117GG>AA	uc002lqd.1	-	8	1324_1325	c.1173_1174CC>TT	c.(1171-1176)GTCCAC>GTTTAC	p.H392Y	MED16_uc010drw.1_Missense_Mutation_p.H217Y|MED16_uc002lqe.2_Missense_Mutation_p.H381Y|MED16_uc002lqf.2_Missense_Mutation_p.H381Y|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Missense_Mutation_p.H381Y|MED16_uc010xfx.1_Missense_Mutation_p.H237Y|MED16_uc010xfy.1_Intron	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	392					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCACGATGTGGACGCTGCCGT	0.713													13	13					0	0	0.004672	0	0
ARID3A	1820	broad.mit.edu	37	19	968479	968479	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:968479G>A	uc002lql.2	+	8	1860	c.1570G>A	c.(1570-1572)GAG>AAG	p.E524K		NM_005224	NP_005215	Q99856	ARI3A_HUMAN	AT rich interactive domain 3A (BRIGHT- like)	524	REKLES.					cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CATGTCGGTGGAGATCAACGG	0.602													16	41					0	0	0.033300	0	0
THOP1	7064	broad.mit.edu	37	19	2808366	2808366	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:2808366C>T	uc002lwj.2	+	9	1534	c.1379C>T	c.(1378-1380)CCC>CTC	p.P460L	THOP1_uc010xgz.1_Missense_Mutation_p.P339L|THOP1_uc002lwk.2_5'Flank	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	460					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCGACGCGCCCTCGCTGCTG	0.607													4	13					0	0	0.014758	0	0
PLIN4	729359	broad.mit.edu	37	19	4513464	4513464	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:4513464C>T	uc002mar.1	-	3	466	c.466G>A	c.(466-468)GAC>AAC	p.D156N	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	156	27 X 33 AA approximate tandem repeat.|2.					lipid particle|plasma membrane					0						GACACCGTGTCCTTGGTGCCG	0.647													22	27					0	0	0.069288	0	0
PRR22	163154	broad.mit.edu	37	19	5783075	5783075	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:5783075G>A	uc002mdb.1	-	1	1536	c.1177C>T	c.(1177-1179)CCG>TCG	p.P393S	PRR22_uc010xiv.1_Missense_Mutation_p.P395S	NM_153359	NP_699190	Q8IZ63	PRR22_HUMAN	proline rich 22 isoform 2	393											0						TTCCTTCCCGGCTTTCCCTTC	0.697													20	24					0	0	0.055883	0	0
EMR1	2015	broad.mit.edu	37	19	6897305	6897305	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:6897305C>T	uc002mfw.2	+	4	422	c.384C>T	c.(382-384)TTC>TTT	p.F128F	EMR1_uc010dvc.2_Silent_p.F128F|EMR1_uc010dvb.2_Intron|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Silent_p.F128F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	128	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CGGGCAATTTCTCCTGTACTG	0.493													16	34					0	0	0.038395	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651589	8651589	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:8651589C>T	uc002mkj.1	-	20	2530	c.2256G>A	c.(2254-2256)CAG>CAA	p.Q752Q	ADAMTS10_uc002mki.1_Silent_p.Q239Q|ADAMTS10_uc002mkk.1_Silent_p.Q384Q	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	752	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GCAGGGACTCCTGGTCTCCCT	0.647											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	70					0	0	0.045515	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8656742	8656742	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:8656742G>A	uc002mkj.1	-	15	2013	c.1739C>T	c.(1738-1740)ACC>ATC	p.T580I	ADAMTS10_uc002mki.1_Missense_Mutation_p.P71S|ADAMTS10_uc002mkk.1_Missense_Mutation_p.T212I	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	580	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GCCCCCGATGGTTGGCCTGGA	0.667													25	41					0	0	0.030593	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841646	8841646	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:8841646C>T	uc010xkg.1	+	1	256	c.256C>T	c.(256-258)CTG>TTG	p.L86L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						ATCAGACTTTCTGCGGGGAGA	0.562													42	45					0	0	0.098360	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841889	8841889	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:8841889C>T	uc010xkg.1	+	1	499	c.499C>T	c.(499-501)CCC>TCC	p.P167S		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P167L(1)		central_nervous_system(1)|skin(1)	2						CCTGCATTTTCCCTACTGTGC	0.552													50	74					0	0	0.048971	0	0
MUC16	94025	broad.mit.edu	37	19	8966742	8966742	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:8966742C>T	uc002mkp.2	-	81	43415	c.43211G>A	c.(43210-43212)AGA>AAA	p.R14404K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R1204K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14502	SEA 16.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGGCAACTCTGTCTACTCT	0.557													4	7					0	0	0.009096	0	0
MUC16	94025	broad.mit.edu	37	19	9066340	9066340	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9066340G>A	uc002mkp.2	-	3	21310	c.21106C>T	c.(21106-21108)CCT>TCT	p.P7036S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7038	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACCCAGAAGGACCTGTTTGA	0.478													74	112					0	0	0.048971	0	0
MUC16	94025	broad.mit.edu	37	19	9071592	9071592	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9071592G>A	uc002mkp.2	-	3	16058	c.15854C>T	c.(15853-15855)CCC>CTC	p.P5285L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5287	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGTCCAAGGGAAGGGTACT	0.517													31	47					0	0	0.050027	0	0
MUC16	94025	broad.mit.edu	37	19	9071830	9071831	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9071830_9071831CC>TT	uc002mkp.2	-	3	15819_15820	c.15615_15616GG>AA	c.(15613-15618)ACGGAC>ACAAAC	p.D5206N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5208	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAACTTGTGTCCGTGGGAAAGC	0.46													28	112					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9073213	9073213	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9073213G>A	uc002mkp.2	-	3	14437	c.14233C>T	c.(14233-14235)CCC>TCC	p.P4745S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4747	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGAAGAGGGAGAGCTGGCT	0.488													44	70					0	0	0.042209	0	0
MUC16	94025	broad.mit.edu	37	19	9074987	9074987	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9074987C>T	uc002mkp.2	-	3	12663	c.12459G>A	c.(12457-12459)GTG>GTA	p.V4153V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4155	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTTCTTCCACAGAGGGAG	0.498													34	70					0	0	0.064281	0	0
MUC16	94025	broad.mit.edu	37	19	9085370	9085370	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9085370C>T	uc002mkp.2	-	1	6649	c.6445G>A	c.(6445-6447)GCC>ACC	p.A2149T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2149	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGTTATGGCCATTGGAAGA	0.493													24	31					0	0	0.091800	0	0
MUC16	94025	broad.mit.edu	37	19	9086851	9086851	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9086851G>A	uc002mkp.2	-	1	5168	c.4964C>T	c.(4963-4965)TCC>TTC	p.S1655F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1655	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTGGGGAGGATGTTCCTAT	0.507													30	55					0	0	0.030593	0	0
MUC16	94025	broad.mit.edu	37	19	9090068	9090068	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9090068C>T	uc002mkp.2	-	1	1951	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	583	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGTTTCTTCAAGCCAAATC	0.532													10	30					0	0	0.069234	0	0
MUC16	94025	broad.mit.edu	37	19	9091577	9091577	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9091577C>T	uc002mkp.2	-	1	442	c.238G>A	c.(238-240)GGG>AGG	p.G80R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	80	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACATCACCCCCAAAGACTGG	0.532													30	61					0	0	0.045705	0	0
OR1M1	125963	broad.mit.edu	37	19	9204006	9204006	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:9204006C>T	uc010xkj.1	+	1	86	c.86C>T	c.(85-87)TCC>TTC	p.S29F		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						CTTCTCTTTTCCCTGTTCTTC	0.517													23	39					0	0	0.062417	0	0
COL5A3	50509	broad.mit.edu	37	19	10097023	10097023	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:10097023C>T	uc002mmq.1	-	30	2406	c.2320G>A	c.(2320-2322)GAG>AAG	p.E774K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	774	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGCCCCTCCTCGCCAGCCTGC	0.617													7	12					0	0	0.029380	0	0
ICAM4	3386	broad.mit.edu	37	19	10398497	10398497	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:10398497C>T	uc002mns.1	+	2	719	c.680C>T	c.(679-681)CCC>CTC	p.P227L	ICAM4_uc002mnr.1_Silent_p.T201T|ICAM4_uc002mnt.1_Missense_Mutation_p.P227L|ICAM5_uc002mnu.3_5'Flank	NM_001544	NP_001535	Q14773	ICAM4_HUMAN	intercellular adhesion molecule 4 isoform 1	227	Extracellular (Potential).				cell-cell adhesion|regulation of immune response	extracellular region|integral to membrane|plasma membrane	integrin binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			AGCTCGGCACCCATTACACTG	0.632													21	57					0	0	0.069288	0	0
RAVER1	125950	broad.mit.edu	37	19	10429025	10429025	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:10429025G>A	uc002moa.2	-	11	2000	c.1920C>T	c.(1918-1920)TTC>TTT	p.F640F	FDX1L_uc002mnx.1_5'Flank|FDX1L_uc002mny.1_5'Flank|RAVER1_uc002mnz.2_Silent_p.F8F	NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			TCCGTTCGCCGAAGCCACTGG	0.577													4	12					0	0	0.009096	0	0
DOCK6	57572	broad.mit.edu	37	19	11326104	11326104	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:11326104C>T	uc002mqs.3	-	32	4106	c.4065G>A	c.(4063-4065)AAG>AAA	p.K1355K	DOCK6_uc010xlq.1_Silent_p.K694K	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1355					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GTGTGACGCTCTTCCGCCAGC	0.522													5	20					0	0	0.047766	0	0
MAN2B1	4125	broad.mit.edu	37	19	12774560	12774561	+	Missense_Mutation	DNP	CC	TT	TT	rs11554970		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:12774560_12774561CC>TT	uc002mub.2	-	5	795_796	c.719_720GG>AA	c.(718-720)CGG>CAA	p.R240Q	MAN2B1_uc010dyv.1_Missense_Mutation_p.R240Q	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	240					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						TGGTGCTGGCCCGCCACACCTG	0.535													10	17					0	0	0.004672	0	0
MAST1	22983	broad.mit.edu	37	19	12977540	12977540	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:12977540C>T	uc002mvm.2	+	18	2231	c.2103C>T	c.(2101-2103)ATC>ATT	p.I701I		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	701	AGC-kinase C-terminal.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CCGTGGAAATCCGCCAGTTCT	0.622													6	16					0	0	0.038147	0	0
CACNA1A	773	broad.mit.edu	37	19	13418659	13418659	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:13418659G>A	uc010dze.2	-	15	2162	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	CACNA1A_uc010dzc.2_Silent_p.F167F|CACNA1A_uc002mwy.3_Silent_p.F641F|CACNA1A_uc010xne.1_Silent_p.F167F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	642	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCCTTCATCGAAATTAAACC	0.547													38	51					0	0	0.042209	0	0
EMR3	84658	broad.mit.edu	37	19	14749142	14749142	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:14749142G>A	uc002mzi.3	-	11	1407	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F	EMR3_uc010dzp.2_Missense_Mutation_p.S368F|EMR3_uc010xnv.1_Missense_Mutation_p.S294F	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	420	Helical; Name=3; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						GGCGATGATGGAGCACAGCAC	0.587													16	25					0	0	0.033300	0	0
BRD4	23476	broad.mit.edu	37	19	15375303	15375303	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:15375303G>A	uc002nar.2	-	6	1346	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	BRD4_uc002nas.2_Missense_Mutation_p.P375L|BRD4_uc002nat.3_Missense_Mutation_p.P375L|BRD4_uc002nau.3_Missense_Mutation_p.P375L	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	375	Bromo 2.				interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CTTGTAGAAGGGCCAGGCGTA	0.577			T	NUT|C15orf55	lethal midline carcinoma of young people						OREG0025319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	49					0	0	0.062417	0	0
AKAP8	10270	broad.mit.edu	37	19	15482798	15482798	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:15482798C>T	uc002nav.2	-	7	1064	c.1003G>A	c.(1003-1005)GGT>AGT	p.G335S	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_Missense_Mutation_p.G149S	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	335					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						CGGAAGTCACCAGCTGCGTCA	0.537													13	19					0	0	0.020292	0	0
CYP4F3	4051	broad.mit.edu	37	19	15752255	15752255	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:15752255C>T	uc002nbj.2	+	2	80	c.30C>T	c.(28-30)GGC>GGT	p.G10G	CYP4F3_uc010xok.1_Silent_p.G10G|CYP4F3_uc010xol.1_Silent_p.G10G|CYP4F3_uc010xom.1_5'UTR|CYP4F3_uc002nbk.2_Silent_p.G10G	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	10					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						CCTCGCTGGGCCTTTGGCCAA	0.657													18	35					0	0	0.049695	0	0
NWD1	284434	broad.mit.edu	37	19	16861094	16861094	+	Silent	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:16861094C>G	uc002neu.3	+	6	2063	c.1641C>G	c.(1639-1641)GCC>GCG	p.A547A	NWD1_uc002net.3_Silent_p.A412A|NWD1_uc002nev.3_Silent_p.A341A			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	547	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGAAATGGGCCTCTTTCACCG	0.672													9	15					0	0	0.080935	0	0
USHBP1	83878	broad.mit.edu	37	19	17369132	17369132	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:17369132C>T	uc002nfs.1	-	8	1222	c.1109G>A	c.(1108-1110)GGA>GAA	p.G370E	USHBP1_uc002nfr.1_5'UTR|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.G306E	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	370							PDZ domain binding			ovary(1)	1						GGCTTCGTCTCCTGCTCCTGA	0.572													24	67					0	0	0.034045	0	0
NXNL1	115861	broad.mit.edu	37	19	17571379	17571379	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:17571379G>A	uc002ngs.2	-	1	347	c.300C>T	c.(298-300)TTC>TTT	p.F100F		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	100	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						CAAAGGGCAGGAAAAGCCATT	0.378													18	26					0	0	0.043863	0	0
ZNF506	440515	broad.mit.edu	37	19	19906124	19906124	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:19906124T>A	uc010eci.2	-	4	720	c.572A>T	c.(571-573)TAT>TTT	p.Y191F	ZNF506_uc002nog.2_Intron|ZNF506_uc002noh.3_Missense_Mutation_p.Y159F	NM_001099269	NP_001092739	Q5JVG8	ZN506_HUMAN	zinc finger protein 506 isoform 1	191					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding				0						AATTTTCTTATATGTAGTACG	0.313													8	12					0	0	0.047766	0	0
ZNF676	163223	broad.mit.edu	37	19	22363977	22363977	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:22363977G>A	uc002nqs.1	-	3	860	c.542C>T	c.(541-543)TCC>TTC	p.S181F		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	181	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AAGGGTTGAGGACCAGTTAAA	0.343													14	36					0	0	0.024245	0	0
ZNF98	148198	broad.mit.edu	37	19	22574587	22574587	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:22574587G>A	uc002nqt.2	-	4	1572	c.1450C>T	c.(1450-1452)CAT>TAT	p.H484Y		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	484	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TCTCCAGTATGAATTACCTTA	0.378													12	45					0	0	0.020292	0	0
ZNF681	148213	broad.mit.edu	37	19	23928095	23928095	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:23928095G>A	uc002nrk.3	-	4	399	c.257C>T	c.(256-258)TCA>TTA	p.S86L	ZNF681_uc002nrl.3_Missense_Mutation_p.S17L|ZNF681_uc002nrj.3_Missense_Mutation_p.S17L	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	86					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CTGCTCTGGTGAAAAGTCTTG	0.313													4	14					0	0	0.009096	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010418	24010418	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:24010418C>T	uc002nrn.2	+	4	878	c.455C>T	c.(454-456)TCT>TTT	p.S152F		NM_002295	NP_002286			ribosomal protein SA												0						AACACAGATTCTCCTCTGCGC	0.542													16	34					0	0	0.083992	0	0
ZNF536	9745	broad.mit.edu	37	19	31039847	31039847	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:31039847C>T	uc002nsu.1	+	4	3459	c.3321C>T	c.(3319-3321)TTC>TTT	p.F1107F	ZNF536_uc010edd.1_Silent_p.F1107F	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1107					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TTTGTAACTTCCCATCAGACT	0.562													17	45					0	0	0.033300	0	0
CHST8	64377	broad.mit.edu	37	19	34263725	34263725	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:34263725C>T	uc002nus.3	+	5	1537	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	CHST8_uc002nut.3_Silent_p.F344F|CHST8_uc002nuu.2_Silent_p.F344F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	344	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					ACTACGATTTCGTAGGCAAGT	0.622													13	22					0	0	0.020292	0	0
KRTDAP	388533	broad.mit.edu	37	19	35978362	35978362	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:35978362C>T	uc002nzh.2	-	6	280	c.268G>A	c.(268-270)GGA>AGA	p.G90R		NM_207392	NP_997275	P60985	KTDAP_HUMAN	keratinocyte differentiation-associated protein	90					cell differentiation	extracellular region					0	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CTCCTCAGTCCTTTCAGCTAG	0.552													31	69					0	0	0.041601	0	0
MLL4	9757	broad.mit.edu	37	19	36220893	36220893	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:36220893G>A	uc010eei.2	+	24	4943	c.4943G>A	c.(4942-4944)GGC>GAC	p.G1648D		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1648					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTGAAGCCTGGCGCCACGGTG	0.642													11	21					0	0	0.105934	0	0
PRODH2	58510	broad.mit.edu	37	19	36297475	36297475	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:36297475C>T	uc002obx.1	-	8	1104	c.1086G>A	c.(1084-1086)AGG>AGA	p.R362R		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	362					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCTCTGCATCCCTCCCCAGCC	0.632													33	70					0	0	0.074837	0	0
APLP1	333	broad.mit.edu	37	19	36362815	36362815	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:36362815G>A	uc002oce.2	+	6	865	c.727G>A	c.(727-729)GAG>AAG	p.E243K	APLP1_uc010xsz.1_Missense_Mutation_p.E204K|APLP1_uc002ocf.2_Missense_Mutation_p.E243K|APLP1_uc002ocg.2_Missense_Mutation_p.E146K|APLP1_uc010xta.1_Missense_Mutation_p.E237K	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	243	Extracellular (Potential).|Poly-Glu.				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGCTGAGGACGAGGAAGAGGA	0.632													39	59					0	0	0.092188	0	0
ZNF585B	92285	broad.mit.edu	37	19	37680644	37680644	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:37680644G>A	uc002ofq.2	-	4	465	c.211C>T	c.(211-213)CCT>TCT	p.P71S	ZNF585B_uc002ofr.1_5'UTR	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	71	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTGGTTTAGGAACTTGATAC	0.478													19	37					0	0	0.091800	0	0
ZNF781	163115	broad.mit.edu	37	19	38160719	38160719	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:38160719G>A	uc002ogy.2	-	4	1073	c.331C>T	c.(331-333)CAT>TAT	p.H111Y	ZNF781_uc002ogz.2_Missense_Mutation_p.H106Y	NM_152605	NP_689818	Q8N8C0	ZN781_HUMAN	zinc finger protein 781	111	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCACCAGTATGAATTCTTTGA	0.378													49	50					0	0	0.048971	0	0
CAPN12	147968	broad.mit.edu	37	19	39228260	39228260	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:39228260G>A	uc002ojd.1	-	9	1293	c.984C>T	c.(982-984)TTC>TTT	p.F328F	CAPN12_uc010egd.1_5'Flank|CAPN12_uc002ojc.1_5'Flank	NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	328	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			AATGGAGGAGGAAGTCCCGCA	0.677													9	11					0	0	0.069234	0	0
DLL3	10683	broad.mit.edu	37	19	39994874	39994874	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:39994874C>T	uc002olx.2	+	5	874	c.816C>T	c.(814-816)GTC>GTT	p.V272V	DLL3_uc010egq.2_Silent_p.V272V|DLL3_uc002olw.2_Silent_p.V272V	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	272	Extracellular (Potential).				Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GATGCCTTGTCCCTGGGCCTG	0.642													25	41					0	0	0.091800	0	0
FCGBP	8857	broad.mit.edu	37	19	40373974	40373974	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:40373974G>C	uc002omp.3	-	26	12112	c.12104C>G	c.(12103-12105)TCC>TGC	p.S4035C		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4035	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GATGCCTCCGGAGGGCTGGCA	0.532													4	27					0	0	0.021553	0	0
FCGBP	8857	broad.mit.edu	37	19	40376728	40376728	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:40376728C>T	uc002omp.3	-	24	11702	c.11694G>A	c.(11692-11694)GGG>GGA	p.G3898G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	3898						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGCTCAGGTTCCCACCACCCA	0.587													22	86					0	0	0.080422	0	0
FCGBP	8857	broad.mit.edu	37	19	40405948	40405948	+	Missense_Mutation	SNP	G	C	C	rs139504445		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:40405948G>C	uc002omp.3	-	10	4906	c.4898C>G	c.(4897-4899)TCC>TGC	p.S1633C		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1633	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GATGCCTCCGGAGGGCTGGCA	0.632													3	37					0	0	0.009096	0	0
PSG4	5672	broad.mit.edu	37	19	43698670	43698670	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:43698670G>A	uc002ovy.2	-	5	1167	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Silent_p.F262F|PSG4_uc002ovz.2_Silent_p.F262F	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	355	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TAGACTCGGCGAAGCAGGACA	0.453													68	110					0	0	0.048971	0	0
ZNF230	7773	broad.mit.edu	37	19	44515002	44515002	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:44515002C>T	uc002oyb.1	+	5	1062	c.811C>T	c.(811-813)CAG>TAG	p.Q271*		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	271	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TCAGAAACATCAGATAATTCA	0.418													24	42					0	0	0.076483	0	0
ZNF226	7769	broad.mit.edu	37	19	44680499	44680499	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:44680499C>T	uc002oyp.2	+	6	1228	c.1084C>T	c.(1084-1086)CCT>TCT	p.P362S	ZNF226_uc002oyq.2_Missense_Mutation_p.P245S|ZNF226_uc002oyr.2_Missense_Mutation_p.P245S|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.P362S|ZNF226_uc002oyt.2_Missense_Mutation_p.P362S	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	362					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				GGCAGAGAAACCTTATAATTG	0.473													17	51					0	0	0.049695	0	0
ZNF229	7772	broad.mit.edu	37	19	44934706	44934706	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:44934706C>T	uc002oze.1	-	6	684	c.250G>A	c.(250-252)GGA>AGA	p.G84R	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.G78R	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	84	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GTATCCTTTCCATTCTTGTCT	0.398													8	13					0	0	0.047766	0	0
CEACAM20	125931	broad.mit.edu	37	19	45015211	45015211	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:45015211C>T	uc010ejn.1	-	12	1630	c.1614G>A	c.(1612-1614)ACG>ACA	p.T538T	CEACAM20_uc010ejo.1_Silent_p.T526T|CEACAM20_uc010ejp.1_Silent_p.T445T|CEACAM20_uc010ejq.1_Silent_p.T433T	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	538	Cytoplasmic (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				AAGGCAGCTTCGTCTGCAAGT	0.493													89	195					0	0	0.048971	0	0
CEACAM20	125931	broad.mit.edu	37	19	45024659	45024659	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:45024659G>A	uc010ejn.1	-	5	895	c.879C>T	c.(877-879)CCC>CCT	p.P293P	CEACAM20_uc010ejo.1_Silent_p.P293P|CEACAM20_uc010ejp.1_Silent_p.P293P|CEACAM20_uc010ejq.1_Silent_p.P293P	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	293	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TGGGCAGGAGGGGCTGGCCAC	0.567													147	310					0	0	0.048971	0	0
BCAM	4059	broad.mit.edu	37	19	45316579	45316579	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:45316579G>A	uc002ozu.2	+	5	621	c.577G>A	c.(577-579)GAG>AAG	p.E193K	BCAM_uc002ozt.1_Missense_Mutation_p.E193K	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	193	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GCAGCGCCTGGAGGTGCCCGT	0.697													94	143					0	0	0.048971	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45895485	45895485	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:45895485G>A	uc002pbn.2	-	8	1545	c.1468C>T	c.(1468-1470)CCC>TCC	p.P490S	PPP1R13L_uc002pbm.2_Missense_Mutation_p.P69S|PPP1R13L_uc002pbo.2_Missense_Mutation_p.P490S	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	490	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		AGCCTCGTGGGGCTGAGAGGC	0.672													12	22					0	0	0.093190	0	0
EML2	24139	broad.mit.edu	37	19	46133221	46133221	+	Silent	SNP	C	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:46133221C>A	uc002pcn.2	-	7	629	c.594G>T	c.(592-594)GTG>GTT	p.V198V	EML2_uc002pco.2_RNA|EML2_uc002pcp.2_Silent_p.V82V|EML2_uc010xxl.1_Silent_p.V345V|EML2_uc010xxm.1_Silent_p.V399V|EML2_uc010xxn.1_RNA|EML2_uc010xxo.1_Silent_p.V198V|EML2_uc010ekj.2_Silent_p.V198V|EML2_uc010ekk.1_RNA	NM_012155	NP_036287	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like	198	WD 2.				sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		TGACATCCACCACCTTGGTCT	0.498													14	32					1.3612e-06	1.3732e-06	0.024245	1	0
SAE1	10055	broad.mit.edu	37	19	47706966	47706966	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:47706966T>C	uc002pgc.2	+	8	973	c.917T>C	c.(916-918)GTT>GCT	p.V306A	SAE1_uc002pgd.2_Silent_p.L258L|SAE1_uc010ekx.2_Intron|SAE1_uc010ekw.2_RNA|SAE1_uc010xyk.1_Missense_Mutation_p.V132A|SAE1_uc002pge.2_Missense_Mutation_p.V242A	NM_016402	NP_057486	Q9UBE0	SAE1_HUMAN	SubName: Full=SUMO-1 activating enzyme subunit 1, isoform CRA_b; SubName: Full=cDNA, FLJ96708, Homo sapiens SUMO-1 activating enzyme subunit 1 (SAE1), mRNA;	306					protein sumoylation|protein ubiquitination	nucleus	ATP-dependent protein binding|enzyme activator activity|ligase activity|protein C-terminus binding|protein heterodimerization activity|ubiquitin activating enzyme activity			ovary(1)	1		all_cancers(25;1.13e-05)|all_lung(116;0.000192)|all_epithelial(76;0.000274)|Lung NSC(112;0.000446)|all_neural(266;0.0652)|Ovarian(192;0.15)		all cancers(93;0.00013)|OV - Ovarian serous cystadenocarcinoma(262;0.000146)|Epithelial(262;0.00697)|GBM - Glioblastoma multiforme(486;0.0278)		TGTGCGGTGGTTGGAGGGATT	0.458													47	70					0	0	0.048971	0	0
CCDC114	93233	broad.mit.edu	37	19	48800455	48800455	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:48800455G>A	uc002pir.2	-	14	2474	c.1791C>T	c.(1789-1791)GGC>GGT	p.G597G	CCDC114_uc002piq.2_Silent_p.G406G|CCDC114_uc002pio.2_3'UTR	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	597	Ser-rich.									ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		AGGTCACGTGGCCCCCACTCG	0.647													13	31					0	0	0.093190	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51645900	51645900	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:51645900C>T	uc002pvv.1	+	1	343	c.274C>T	c.(274-276)CGG>TGG	p.R92W	SIGLEC7_uc002pvw.1_Missense_Mutation_p.R92W|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Missense_Mutation_p.R92W	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	92	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		GGAGGAAACTCGGGACCGATT	0.537													30	65					0	0	0.064281	0	0
ZNF808	388558	broad.mit.edu	37	19	53056989	53056989	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:53056989C>T	uc010epq.1	+	5	997	c.820C>T	c.(820-822)CTT>TTT	p.L274F	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	274	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CAAGCAATACCTTGCATGCCA	0.398													37	76					0	0	0.080422	0	0
ZNF468	90333	broad.mit.edu	37	19	53352422	53352422	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:53352422C>T	uc002qaf.2	-	3	211	c.60G>A	c.(58-60)GAG>GAA	p.E20E	ZNF468_uc002qae.2_5'UTR	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	20	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		ATTTCCACTCCTCCTGAGAGA	0.458													10	190					0	0	0.020292	0	0
ZNF347	84671	broad.mit.edu	37	19	53644232	53644232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:53644232G>A	uc002qbb.1	-	5	1918	c.1849C>T	c.(1849-1851)CGA>TGA	p.R617*	ZNF347_uc010eql.1_Nonsense_Mutation_p.R618*|ZNF347_uc002qbc.1_Nonsense_Mutation_p.R618*	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	617	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		GTATGAATTCGCTGATGCCTT	0.398													29	43					0	0	0.030593	0	0
ZNF347	84671	broad.mit.edu	37	19	53644982	53644982	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:53644982G>A	uc002qbb.1	-	5	1168	c.1099C>T	c.(1099-1101)CAT>TAT	p.H367Y	ZNF347_uc010eql.1_Missense_Mutation_p.H368Y|ZNF347_uc002qbc.1_Missense_Mutation_p.H368Y	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	367	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TCTCCAGTATGAATTCCTCGA	0.418													29	44					0	0	0.041601	0	0
LILRA2	11027	broad.mit.edu	37	19	55086445	55086445	+	Silent	SNP	G	A	A	rs141931276		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:55086445G>A	uc002qgg.3	+	4	689	c.600G>A	c.(598-600)TCG>TCA	p.S200S	LILRA2_uc010ern.2_Silent_p.S200S|LILRA2_uc002qgf.2_Silent_p.S200S|LILRA2_uc010yfe.1_Silent_p.S200S|LILRA2_uc010yff.1_Silent_p.S188S|LILRA2_uc010ero.2_Silent_p.S188S|LILRA2_uc010yfg.1_Silent_p.S200S	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	200	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CTTATGACTCGAACTCTCCCT	0.577													54	85					0	0	0.048971	0	0
LILRA1	11024	broad.mit.edu	37	19	55107116	55107116	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:55107116A>T	uc002qgh.1	+	6	856	c.674A>T	c.(673-675)AAG>ATG	p.K225M	LILRA2_uc010yfg.1_Missense_Mutation_p.K223M|LILRA1_uc010yfh.1_Missense_Mutation_p.K225M	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	225	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GTTTCTAAGAAGCCATCACTC	0.562													29	64					0	0	0.045705	0	0
NLRP4	147945	broad.mit.edu	37	19	56363515	56363515	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:56363515C>T	uc002qmd.3	+	2	491	c.69C>T	c.(67-69)TTC>TTT	p.F23F		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	23	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGGAGGAGTTCAGGAAATTTA	0.433													45	77					0	0	0.048971	0	0
NLRP13	126204	broad.mit.edu	37	19	56423178	56423178	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:56423178C>T	uc010ygg.1	-	5	2030	c.2005G>A	c.(2005-2007)GAA>AAA	p.E669K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	669							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGGAGTTCTTCGTCCTCCAAA	0.408													31	48					0	0	0.050027	0	0
NLRP8	126205	broad.mit.edu	37	19	56467098	56467098	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:56467098C>A	uc002qmh.2	+	3	1745	c.1674C>A	c.(1672-1674)TTC>TTA	p.F558L	NLRP8_uc010etg.2_Missense_Mutation_p.F558L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	558						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TGGGACTTTTCTTATTCGGTT	0.458													24	27					1.22574e-08	1.24019e-08	0.069288	1	0
NLRP5	126206	broad.mit.edu	37	19	56539831	56539831	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:56539831C>T	uc002qmj.2	+	7	2232	c.2232C>T	c.(2230-2232)TTC>TTT	p.F744F	NLRP5_uc002qmi.2_Silent_p.F725F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	744	LRR 2.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AAGGGATCTTCCCAAGAGATG	0.517													74	135					0	0	0.048971	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58563902	58563903	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr19:58563902_58563903CC>TT	uc002qrc.1	+	5	757_758	c.510_511CC>TT	c.(508-513)CTCCCC>CTTTCC	p.P171S		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	171					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCCCAGCACTCCCCGAGGAAAG	0.653													29	41					0	0	0.004672	0	0
FAM110C	642273	broad.mit.edu	37	2	45442	45442	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:45442C>T	uc010yim.1	-	1	944	c.944G>A	c.(943-945)CGA>CAA	p.R315Q		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	315						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		GCACACACCTCGGGTCCGGCT	0.632													15	39					0	0	0.028581	0	0
PXDN	7837	broad.mit.edu	37	2	1643086	1643086	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:1643086C>T	uc002qxa.2	-	20	4125	c.4061G>A	c.(4060-4062)CGG>CAG	p.R1354Q		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1354					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GGGTATTTTCCGTGGTCTTGT	0.577													6	14					0	0	0.021553	0	0
SDC1	6382	broad.mit.edu	37	2	20402566	20402566	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:20402566G>A	uc002rdo.1	-	5	1193	c.894C>T	c.(892-894)GCC>GCT	p.A298A	SDC1_uc002rdp.1_Silent_p.A298A|SDC1_uc010exv.2_Intron	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	298	Cytoplasmic (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		GCTTCTGGTAGGCCCCGCCGT	0.597													54	101					0	0	0.048971	0	0
APOB	338	broad.mit.edu	37	2	21227313	21227313	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:21227313C>T	uc002red.2	-	28	12043	c.11915G>A	c.(11914-11916)GGA>GAA	p.G3972E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3972					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTGCGCTTTTCCTTCCCATTC	0.463													187	396					0	0	0.048971	0	0
ATAD2B	54454	broad.mit.edu	37	2	24021069	24021069	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:24021069G>A	uc002rek.3	-	19	2873	c.2579C>T	c.(2578-2580)TCA>TTA	p.S860L	ATAD2B_uc010yki.1_RNA|ATAD2B_uc002rei.3_Missense_Mutation_p.S105L|ATAD2B_uc002rej.3_Missense_Mutation_p.S28L	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	860							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGTGAAAATGATGGTATATC	0.358													8	16					0	0	0.038147	0	0
ASXL2	55252	broad.mit.edu	37	2	25965571	25965571	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:25965571G>A	uc002rgs.2	-	12	3856	c.3635C>T	c.(3634-3636)TCA>TTA	p.S1212L	ASXL2_uc002rgt.1_Missense_Mutation_p.S695L	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1212					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTGAGGTCCTGAACTTGTGTC	0.473													31	40					0	0	0.041601	0	0
DPYSL5	56896	broad.mit.edu	37	2	27157447	27157447	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:27157447G>A	uc002rhu.3	+	8	950	c.792G>A	c.(790-792)GGG>GGA	p.G264G	DPYSL5_uc002rhv.3_Silent_p.G264G	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	264					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTCTTCCAGGGAAGGTTGTGC	0.413													44	69					0	0	0.111260	0	0
SLC5A6	8884	broad.mit.edu	37	2	27424861	27424861	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:27424861G>A	uc002rjd.2	-	13	1748	c.1357C>T	c.(1357-1359)CCT>TCT	p.P453S	SLC5A6_uc010eyv.1_Missense_Mutation_p.P453S	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	453					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	CTCACAGGAGGGTTAGCACAT	0.572													27	35					0	0	0.030593	0	0
SLC5A6	8884	broad.mit.edu	37	2	27427419	27427419	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:27427419G>A	uc002rjd.2	-	9	1306	c.915C>T	c.(913-915)CTC>CTT	p.L305L	SLC5A6_uc010eyv.1_Silent_p.L305L	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	305	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	AGCCCACGCAGAGGGACACCT	0.587													17	65					0	0	0.033300	0	0
C2orf16	84226	broad.mit.edu	37	2	27802109	27802109	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:27802109C>T	uc002rkz.3	+	1	2721	c.2670C>T	c.(2668-2670)TCC>TCT	p.S890S		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	890										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AATATCTCTCCACTATGCTAA	0.463													51	62					0	0	0.048971	0	0
CAPN13	92291	broad.mit.edu	37	2	30955419	30955419	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:30955419C>T	uc002rnn.2	-	19	1988	c.1812G>A	c.(1810-1812)GGG>GGA	p.G604G	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	604					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TGATGAAGATCCCTCTGAGGA	0.617													6	11					0	0	0.021553	0	0
EPAS1	2034	broad.mit.edu	37	2	46607423	46607423	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:46607423G>A	uc002ruv.2	+	12	2100	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K	EPAS1_uc002ruw.2_Missense_Mutation_p.E4K	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	538	NTAD.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			CATGGACGGGGAAGACTTCCA	0.587													35	83					0	0	0.064281	0	0
KLRAQ1	129285	broad.mit.edu	37	2	48678188	48678188	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:48678188T>G	uc002rwm.2	+	2	284	c.99T>G	c.(97-99)GAT>GAG	p.D33E	KLRAQ1_uc002rwi.1_Missense_Mutation_p.D33E|KLRAQ1_uc002rwj.2_Missense_Mutation_p.D33E|KLRAQ1_uc002rwl.2_5'UTR|KLRAQ1_uc002rwk.2_Missense_Mutation_p.D33E|KLRAQ1_uc010yok.1_Missense_Mutation_p.D33E	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	33	Potential.									ovary(1)	1						GTGTTGTGGATGAACAAGCAA	0.383													37	51					0	0	0.104719	0	0
CCDC88A	55704	broad.mit.edu	37	2	55543249	55543249	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:55543249G>A	uc002ryv.2	-	22	4587	c.3745C>T	c.(3745-3747)CTG>TTG	p.L1249L	CCDC88A_uc010yoz.1_Silent_p.L1250L|CCDC88A_uc010ypa.1_Silent_p.L1249L|CCDC88A_uc002ryu.2_Silent_p.L532L|CCDC88A_uc002rys.2_Silent_p.L235L|CCDC88A_uc002ryw.2_Silent_p.L533L|CCDC88A_uc010fby.1_Silent_p.L129L	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1250	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						GTATGATTCAGCCTATAATTA	0.249													6	9					0	0	0.021553	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420137	56420137	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:56420137C>T	uc002rzn.2	+	2	1304	c.802C>T	c.(802-804)CCA>TCA	p.P268S		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	268	His-rich.									breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CTGTGGAACCCCAGATCGCCC	0.652													22	33					0	0	0.055883	0	0
DYSF	8291	broad.mit.edu	37	2	71780317	71780317	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:71780317C>G	uc002sie.2	+	20	2305	c.1929C>G	c.(1927-1929)GAC>GAG	p.D643E	DYSF_uc010feg.2_Missense_Mutation_p.D674E|DYSF_uc010feh.2_Missense_Mutation_p.D629E|DYSF_uc002sig.3_Missense_Mutation_p.D629E|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D643E|DYSF_uc010fef.2_Missense_Mutation_p.D660E|DYSF_uc010fei.2_Missense_Mutation_p.D660E|DYSF_uc010fek.2_Missense_Mutation_p.D661E|DYSF_uc010fej.2_Missense_Mutation_p.D630E|DYSF_uc010fel.2_Missense_Mutation_p.D630E|DYSF_uc010feo.2_Missense_Mutation_p.D675E|DYSF_uc010fem.2_Missense_Mutation_p.D644E|DYSF_uc010fen.2_Missense_Mutation_p.D661E|DYSF_uc002sif.2_Missense_Mutation_p.D644E	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	643	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CAGTCTTTGACGGTGAGGCAG	0.587													24	43					0	0	0.091800	0	0
DYSF	8291	broad.mit.edu	37	2	71797377	71797377	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:71797377C>T	uc002sie.2	+	28	3320	c.2944C>T	c.(2944-2946)CCC>TCC	p.P982S	DYSF_uc010feg.2_Missense_Mutation_p.P1013S|DYSF_uc010feh.2_Missense_Mutation_p.P968S|DYSF_uc002sig.3_Missense_Mutation_p.P968S|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P982S|DYSF_uc010fef.2_Missense_Mutation_p.P999S|DYSF_uc010fei.2_Missense_Mutation_p.P999S|DYSF_uc010fek.2_Missense_Mutation_p.P1000S|DYSF_uc010fej.2_Missense_Mutation_p.P969S|DYSF_uc010fel.2_Missense_Mutation_p.P969S|DYSF_uc010feo.2_Missense_Mutation_p.P1014S|DYSF_uc010fem.2_Missense_Mutation_p.P983S|DYSF_uc010fen.2_Missense_Mutation_p.P1000S|DYSF_uc002sif.2_Missense_Mutation_p.P983S	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	982	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GAAGGTGCTTCCCAAGGATGA	0.532													25	58					0	0	0.108266	0	0
MRPL19	9801	broad.mit.edu	37	2	75879379	75879379	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:75879379C>G	uc002snl.2	+	3	358	c.333C>G	c.(331-333)TTC>TTG	p.F111L	MRPL19_uc002snm.1_Missense_Mutation_p.F111L	NM_014763	NP_055578	P49406	RM19_HUMAN	mitochondrial ribosomal protein L19 precursor	111					translation	mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0						TTCCAGAGTTCTATGTTGGTC	0.333													23	48					0	0	0.091800	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529669	80529669	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:80529669G>A	uc002sok.1	-	2	1546	c.1276C>T	c.(1276-1278)CAC>TAC	p.H426Y	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	426	Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						ACCACCTTGTGGATCTGCACG	0.657										HNSCC(69;0.2)			32	33					0	0	0.054565	0	0
DNAH6	1768	broad.mit.edu	37	2	84780102	84780102	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:84780102G>A	uc010fgb.2	+	10	1683	c.1546G>A	c.(1546-1548)GAA>AAA	p.E516K	DNAH6_uc002soo.2_Missense_Mutation_p.E95K|DNAH6_uc002sop.2_Missense_Mutation_p.E95K	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	516	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						GTTTCTCACAGAACTAATGTT	0.403													26	69					0	0	0.091800	0	0
USP39	10713	broad.mit.edu	37	2	85850842	85850842	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:85850842C>T	uc002sqe.2	+	4	543	c.507C>T	c.(505-507)ACC>ACT	p.T169T	USP39_uc002sqb.2_5'UTR|USP39_uc010ysu.1_Silent_p.T91T|USP39_uc010ysv.1_Silent_p.T66T|USP39_uc010fgn.1_Silent_p.T169T|USP39_uc002sqf.2_Silent_p.T169T|USP39_uc002sqg.2_Silent_p.T169T|USP39_uc010fgo.2_Silent_p.T169T	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	169	UBP-type.				spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						ACCTCCACACCCTCAAGTTTT	0.478													107	132					0	0	0.048971	0	0
SMYD1	150572	broad.mit.edu	37	2	88367503	88367503	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:88367503C>T	uc002ssr.2	+	1	122	c.120C>T	c.(118-120)TCC>TCT	p.S40S	SMYD1_uc002ssq.1_Silent_p.S35S	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	40					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GGGCTTATTCCGCAGTGGTTT	0.493													55	73					0	0	0.048971	0	0
THNSL2	55258	broad.mit.edu	37	2	88474315	88474315	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:88474315C>T	uc002ssz.3	+	3	534	c.381C>T	c.(379-381)TTC>TTT	p.F127F	THNSL2_uc002ssv.2_RNA|THNSL2_uc002ssw.3_Silent_p.F127F|THNSL2_uc002ssx.3_Silent_p.F95F|THNSL2_uc002sta.3_Intron|THNSL2_uc002ssy.3_Silent_p.F127F|THNSL2_uc010fhe.2_5'UTR	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	127					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						TGCAGTACTTCCTGGAGAAGA	0.517													29	58					0	0	0.064281	0	0
TSGA10	80705	broad.mit.edu	37	2	99689498	99689498	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:99689498C>T	uc002szg.3	-	11	1549	c.921G>A	c.(919-921)GAG>GAA	p.E307E	TSGA10_uc002szh.3_Silent_p.E307E|TSGA10_uc002szi.3_Silent_p.E307E|TSGA10_uc010fin.1_Silent_p.E307E|TSGA10_uc010yvn.1_Intron	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	307					spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						CCTGTTCCATCTCAGCAATGA	0.328													42	56					0	0	0.048971	0	0
SULT1C3	442038	broad.mit.edu	37	2	108863803	108863803	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:108863803G>A	uc010ywo.1	+	1	153	c.153G>A	c.(151-153)CTG>CTA	p.L51L		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	51						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						ATCTTATTCTGGCAACTTACC	0.333													25	38					0	0	0.034045	0	0
EDAR	10913	broad.mit.edu	37	2	109522810	109522810	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:109522810C>T	uc002teq.3	-	11	1409	c.978G>A	c.(976-978)AGG>AGA	p.R326R	EDAR_uc010fjn.2_Silent_p.R358R|EDAR_uc010yws.1_Silent_p.R358R	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	326	Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GGATCTTTTTCCTCCGGCTTT	0.507													31	41					0	0	0.069456	0	0
CKAP2L	150468	broad.mit.edu	37	2	113514357	113514357	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:113514357C>T	uc002tie.2	-	4	670	c.591G>A	c.(589-591)AGG>AGA	p.R197R	CKAP2L_uc002tif.2_Intron|CKAP2L_uc010yxp.1_Silent_p.R32R|CKAP2L_uc010yxq.1_Silent_p.R32R	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	197						centrosome					0						GATCTGGCTTCCTCTCAGGTT	0.338													18	31					0	0	0.033300	0	0
MARCO	8685	broad.mit.edu	37	2	119727733	119727733	+	Silent	SNP	C	T	T	rs75633112		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:119727733C>T	uc002tln.1	+	3	375	c.243C>T	c.(241-243)TTC>TTT	p.F81F	MARCO_uc010yyf.1_Silent_p.F3F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	81	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGATGTATTTCCTCAATGACA	0.582													29	66					0	0	0.050027	0	0
MARCO	8685	broad.mit.edu	37	2	119748183	119748183	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:119748183G>A	uc002tln.1	+	13	1214	c.1082G>A	c.(1081-1083)GGA>GAA	p.G361E	MARCO_uc010yyf.1_Missense_Mutation_p.G283E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	361	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGACAGCAAGGAAGAAAAGGA	0.468													25	38					0	0	0.108266	0	0
PCDP1	200373	broad.mit.edu	37	2	120362534	120362534	+	Missense_Mutation	SNP	G	A	A	rs141477875		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:120362534G>A	uc002tmb.2	+	11	1229	c.137G>A	c.(136-138)GGA>GAA	p.G46E	PCDP1_uc010yyq.1_Missense_Mutation_p.G176E	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	332						cilium	calmodulin binding				0	Colorectal(110;0.196)					CAAGAACCAGGAAAATTGAAG	0.383													29	70					0	0	0.034045	0	0
RALB	5899	broad.mit.edu	37	2	121047315	121047315	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:121047315C>T	uc002tmk.2	+	4	673	c.483C>T	c.(481-483)ACC>ACT	p.T161T	RALB_uc010yys.1_Silent_p.T183T|RALB_uc002tml.2_Silent_p.T182T|RALB_uc002tmm.2_RNA|RALB_uc010yyt.1_RNA	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	161					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				CAGCGAAGACCCGGGCCAACG	0.557													22	13					0	0	0.069288	0	0
MYO7B	4648	broad.mit.edu	37	2	128384601	128384601	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:128384601G>A	uc002top.2	+	31	4242	c.4189G>A	c.(4189-4191)GTG>ATG	p.V1397M	MYO7B_uc002toq.1_Missense_Mutation_p.V250M|MYO7B_uc002tor.1_Missense_Mutation_p.V250M	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1397	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		AGAGCAGGTGGTGGACGCCGC	0.622													9	16					0	0	0.080935	0	0
LOC401010	401010	broad.mit.edu	37	2	132200740	132200740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:132200740C>T	uc002tst.2	-	1	1728	c.1262G>A	c.(1261-1263)GGG>GAG	p.G421E		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CTGAACCTTCCCAAGCAGCTG	0.642													11	14					0	0	0.105934	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541150	133541150	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:133541150C>T	uc002ttp.2	-	14	3608	c.3234G>A	c.(3232-3234)ATG>ATA	p.M1078I	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1078							protein binding				0						TGGAGGACGTCATTTCCAGTG	0.507													76	168					0	0	0.048971	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542973	133542973	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:133542973C>T	uc002ttp.2	-	14	1785	c.1411G>A	c.(1411-1413)GAT>AAT	p.D471N	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	471							protein binding				0						GAATCTAGATCATAAACAAAT	0.502													22	53					0	0	0.055883	0	0
LRP1B	53353	broad.mit.edu	37	2	141460033	141460033	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:141460033C>T	uc002tvj.1	-	38	7085	c.6113G>A	c.(6112-6114)GGA>GAA	p.G2038E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2038	Extracellular (Potential).|LDL-receptor class B 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCATGCTATTCCCATGCTTAC	0.423										TSP Lung(27;0.18)			29	40					0	0	0.037714	0	0
LRP1B	53353	broad.mit.edu	37	2	141665646	141665646	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:141665646C>T	uc002tvj.1	-	22	4292	c.3320G>A	c.(3319-3321)GGG>GAG	p.G1107E	LRP1B_uc010fnl.1_Missense_Mutation_p.G289E	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1107	Extracellular (Potential).|LDL-receptor class A 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GATGCATCTCCCTTAAGAAAA	0.398										TSP Lung(27;0.18)			14	30					0	0	0.020292	0	0
ZEB2	9839	broad.mit.edu	37	2	145153994	145153994	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:145153994T>C	uc002tvu.2	-	9	3532	c.3052A>G	c.(3052-3054)AAA>GAA	p.K1018E	ZEB2_uc002tvv.2_Missense_Mutation_p.K1012E|ZEB2_uc010zbm.1_Missense_Mutation_p.K989E|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1018	C2H2-type 5.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TGTTCGTATTTATGTCGCAGA	0.418													68	117					0	0	0.048971	0	0
ZEB2	9839	broad.mit.edu	37	2	145158836	145158836	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:145158836G>A	uc002tvu.2	-	7	1326	c.846C>T	c.(844-846)TTC>TTT	p.F282F	ZEB2_uc002tvv.2_Silent_p.F276F|ZEB2_uc010zbm.1_Silent_p.F253F|ZEB2_uc010fnp.2_Silent_p.F190F|ZEB2_uc010fnq.1_Silent_p.F311F	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	282	C2H2-type 3.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CTGTGCATTTGAACTTGCGAT	0.433													47	72					0	0	0.048971	0	0
EPC2	26122	broad.mit.edu	37	2	149519472	149519473	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:149519472_149519473AC>TT	uc010zbt.1	+	5	815_816	c.788_789AC>TT	c.(787-789)CAC>CTT	p.H263L		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	263					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		GAATTATTGCACTTAACCTTAG	0.322													11	14					0	0	0.004672	0	0
NEB	4703	broad.mit.edu	37	2	152394723	152394723	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:152394723C>T	uc010fnx.2	-	111	16016	c.15825G>A	c.(15823-15825)GGG>GGA	p.G5275G	NEB_uc002txr.2_Silent_p.G1698G	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5275					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGTGGTATTTCCCTTTGGTCT	0.343													53	120					0	0	0.048971	0	0
GALNT13	114805	broad.mit.edu	37	2	154801065	154801065	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:154801065C>T	uc002tyr.3	+	3	622	c.55C>T	c.(55-57)CTT>TTT	p.L19F	GALNT13_uc002tyt.3_Missense_Mutation_p.L19F	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	19	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GATGTGGGTTCTTGTTGATGT	0.423													57	74					0	0	0.048971	0	0
MARCH7	64844	broad.mit.edu	37	2	160605065	160605065	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:160605065C>T	uc002uax.2	+	5	1386	c.1264C>T	c.(1264-1266)CAT>TAT	p.H422Y	MARCH7_uc010foq.2_Missense_Mutation_p.H422Y|MARCH7_uc010zcn.1_Missense_Mutation_p.H366Y|MARCH7_uc010for.2_Missense_Mutation_p.H384Y|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	422							ligase activity|zinc ion binding				0						ATCTAGATCTCATATTTTTAG	0.428													18	27					0	0	0.033300	0	0
SCN1A	6323	broad.mit.edu	37	2	166929999	166929999	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:166929999C>T	uc010zcz.1	-	1	151	c.133G>A	c.(133-135)GAC>AAC	p.D45N		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	45						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCATTTTCGTCGTCATCTTTT	0.443													45	131					0	0	0.048971	0	0
XIRP2	129446	broad.mit.edu	37	2	168098367	168098367	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:168098367G>A	uc002udx.2	+	7	1141	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K	XIRP2_uc010fpn.2_Missense_Mutation_p.E408K|XIRP2_uc010fpo.2_Missense_Mutation_p.E375K|XIRP2_uc010fpp.2_Missense_Mutation_p.E375K|XIRP2_uc002udy.2_Missense_Mutation_p.E200K|XIRP2_uc010fpq.2_Missense_Mutation_p.E153K|XIRP2_uc010fpr.2_Missense_Mutation_p.E153K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	200					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTCTGCCCAGGAAAAGATCCT	0.383													44	88					0	0	0.048971	0	0
XIRP2	129446	broad.mit.edu	37	2	168100738	168100738	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:168100738A>C	uc002udx.2	+	8	2854	c.2836A>C	c.(2836-2838)AAG>CAG	p.K946Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.K771Q|XIRP2_uc010fpq.2_Missense_Mutation_p.K724Q|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	771	Xin 12.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGGAGATGTGAAGAATTACAC	0.333													12	12					0	0	0.105934	0	0
XIRP2	129446	broad.mit.edu	37	2	168103907	168103907	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:168103907G>A	uc002udx.2	+	8	6023	c.6005G>A	c.(6004-6006)GGG>GAG	p.G2002E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G1827E|XIRP2_uc010fpq.2_Missense_Mutation_p.G1780E|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1827					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAAACTATGGGGAAATCTTGC	0.453													22	34					0	0	0.083992	0	0
PPIG	9360	broad.mit.edu	37	2	170493779	170493779	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:170493779C>T	uc002uez.2	+	14	2231	c.2011C>T	c.(2011-2013)CAT>TAT	p.H671Y	PPIG_uc010fpx.2_Missense_Mutation_p.H656Y|PPIG_uc010fpy.2_Missense_Mutation_p.H664Y|PPIG_uc002ufb.2_Missense_Mutation_p.H671Y|PPIG_uc002ufd.2_Missense_Mutation_p.H668Y	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	671					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	AAGTCGTGATCATAATAGCTC	0.353													29	59					0	0	0.045705	0	0
METTL8	79828	broad.mit.edu	37	2	172195767	172195767	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:172195767G>A	uc010zdo.1	-	4	674	c.533C>T	c.(532-534)TCT>TTT	p.S178F	METTL8_uc002ugu.3_Missense_Mutation_p.S178F|METTL8_uc002ugv.3_Missense_Mutation_p.S178F|METTL8_uc002ugt.3_Missense_Mutation_p.S178F|METTL8_uc002ugs.3_Missense_Mutation_p.S128F|METTL8_uc010zdp.1_Missense_Mutation_p.S133F	NM_024770	NP_079046	B3KW44	B3KW44_HUMAN	methyltransferase like 8	178							methyltransferase activity			ovary(1)	1						GTGTTTTTCAGAGTCTAGGTT	0.398													45	74					0	0	0.048971	0	0
ATF2	1386	broad.mit.edu	37	2	175962288	175962288	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:175962288G>A	uc002ujl.2	-	11	1124	c.862C>T	c.(862-864)CCA>TCA	p.P288S	ATF2_uc010fqv.2_Missense_Mutation_p.P239S|ATF2_uc002ujv.2_Missense_Mutation_p.P35S|ATF2_uc002ujm.2_Missense_Mutation_p.P230S|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Intron|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Missense_Mutation_p.P288S|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Missense_Mutation_p.P270S|ATF2_uc002ujs.2_Missense_Mutation_p.P230S|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_Missense_Mutation_p.P230S|ATF2_uc002ujx.1_RNA	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	288					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			TTGGTAACTGGAGGATGTTGC	0.413													22	43					0	0	0.076483	0	0
TTN	7273	broad.mit.edu	37	2	179443395	179443395	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:179443395C>T	uc010zfg.1	-	270	60792	c.60568G>A	c.(60568-60570)GAT>AAT	p.D20190N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D13885N|TTN_uc010zfi.1_Missense_Mutation_p.D13818N|TTN_uc010zfj.1_Missense_Mutation_p.D13693N|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21117							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATACTGAATCGTGTCTGACA	0.398													10	23					0	0	0.080935	0	0
TTN	7273	broad.mit.edu	37	2	179549675	179549675	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:179549675G>A	uc010zfg.1	-	127	29004	c.28780C>T	c.(28780-28782)CCT>TCT	p.P9594S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6255S|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10521							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGGAGCAGGAACTTTCTTT	0.338													5	16					0	0	0.029380	0	0
NEUROD1	4760	broad.mit.edu	37	2	182543356	182543356	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:182543356C>T	uc002uof.2	-	2	468	c.232G>A	c.(232-234)GAT>AAT	p.D78N	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	78					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GGCTTTTGATCGTCAtcctcc	0.393													127	317					0	0	0.048971	0	0
COL3A1	1281	broad.mit.edu	37	2	189854129	189854129	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:189854129C>T	uc002uqj.1	+	8	761	c.644C>T	c.(643-645)CCA>CTA	p.P215L	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	215	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CAGGGCCCTCCAGGACCTCCT	0.338													5	8					0	0	0.021553	0	0
DNAH7	56171	broad.mit.edu	37	2	196664178	196664178	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:196664178C>T	uc002utj.3	-	55	10296	c.10195G>A	c.(10195-10197)GAA>AAA	p.E3399K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3399	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTATAAATTCCTGCAACATT	0.363													33	85					0	0	0.069456	0	0
DNAH7	56171	broad.mit.edu	37	2	196759894	196759894	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:196759894C>T	uc002utj.3	-	30	4803	c.4702G>A	c.(4702-4704)GAT>AAT	p.D1568N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1568					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCCAGCAAATCATTGTAATCT	0.323													10	27					0	0	0.080935	0	0
CFLAR	8837	broad.mit.edu	37	2	202025477	202025477	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:202025477C>T	uc002uxb.3	+	9	1568	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	CFLAR_uc010zhk.1_Silent_p.L276L|CFLAR_uc002uxc.3_Silent_p.L337L|CFLAR_uc010zhl.1_Silent_p.L276L|CFLAR_uc010fsw.1_RNA|CFLAR_uc002uxd.3_Silent_p.L372L|CFLAR_uc002uxf.2_Silent_p.L372L|CFLAR_uc010fsy.2_RNA|CFLAR_uc010fsx.2_Intron|CFLAR_uc010zhm.1_Silent_p.L276L|CFLAR_uc010fsz.2_Silent_p.L127L|CFLAR_uc002uxg.2_Silent_p.L127L|uc002uxh.1_5'Flank	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	372	Interaction with caspase-8.|Interaction with caspase-3.|Interaction with TRAF1 and TRAF2.|Not proteolytically processed and involved in apoptosis inhibition.|Interaction with caspase-8 subunits p18 and p10.			L -> F (in Ref. 6; AAB99793).	anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						ACAGCAGCCTCTTGGAGGTGG	0.512													21	30					0	0	0.062417	0	0
CDK15	65061	broad.mit.edu	37	2	202687611	202687611	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:202687611C>T	uc002uyt.2	+	5	577	c.528C>T	c.(526-528)TTC>TTT	p.F176F	CDK15_uc010ftm.2_Silent_p.F41F|CDK15_uc002uys.2_Silent_p.F125F|CDK15_uc010ftn.1_Silent_p.F125F|CDK15_uc010fto.1_Silent_p.F176F	NM_139158	NP_631897	Q96Q40	CDK15_HUMAN	PFTAIRE protein kinase 2	176	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|metal ion binding|protein binding			breast(2)|ovary(1)|lung(1)|kidney(1)	5					Adenosine triphosphate(DB00171)	CACTGACATTCGTTTTTGAAT	0.343													45	66					0	0	0.048971	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203839124	203839124	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:203839124C>T	uc002uzo.2	+	12	1679	c.1399C>T	c.(1399-1401)CCA>TCA	p.P467S	ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Missense_Mutation_p.P391S|ALS2CR8_uc010zib.1_Missense_Mutation_p.P391S|ALS2CR8_uc010zic.1_Missense_Mutation_p.P379S|ALS2CR8_uc002uzp.2_Missense_Mutation_p.P467S	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	467										large_intestine(1)|ovary(1)	2						ATCTTTTTTTCCAACTGTAAA	0.328													104	177					0	0	0.048971	0	0
SPEG	10290	broad.mit.edu	37	2	220352966	220352966	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:220352966G>A	uc010fwg.2	+	32	7792	c.7792G>A	c.(7792-7794)GGG>AGG	p.G2598R		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2598	Ig-like 9.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GCTGCTGGAGGGGGAGGCAGC	0.607													26	54					0	0	0.108266	0	0
CCDC140	151278	broad.mit.edu	37	2	223168937	223168937	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:223168937C>T	uc002vnb.1	+	2	700	c.316C>T	c.(316-318)CGG>TGG	p.R106W		NM_153038	NP_694583	Q96MF4	CC140_HUMAN	coiled-coil domain containing 140	106											0		Renal(207;0.0376)		Epithelial(121;4.03e-10)|all cancers(144;1.8e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAACTCCACCCGGGCGTCTCC	0.627													15	20					0	0	0.028581	0	0
WDR69	164781	broad.mit.edu	37	2	228786205	228786205	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:228786205C>T	uc002vpn.1	+	12	1220	c.1141C>T	c.(1141-1143)CAG>TAG	p.Q381*	WDR69_uc010zlw.1_Nonsense_Mutation_p.Q366*|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	381	WD 7.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CCAGTGCCTCCAGGTTCTTGA	0.448													25	33					0	0	0.083992	0	0
PID1	55022	broad.mit.edu	37	2	229890692	229890692	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:229890692C>T	uc002vpr.3	-	3	447	c.409G>A	c.(409-411)GAA>AAA	p.E137K	PID1_uc002vps.3_Missense_Mutation_p.E135K|PID1_uc002vpt.3_Missense_Mutation_p.E104K|PID1_uc002vpu.3_Missense_Mutation_p.E55K	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	137	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GGCCGGATTTCCAGGAGGGCA	0.557													37	25					0	0	0.069456	0	0
SP140	11262	broad.mit.edu	37	2	231152654	231152654	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:231152654G>A	uc002vql.2	+	18	1808	c.1693G>A	c.(1693-1695)GCT>ACT	p.A565T	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.A451T|SP140_uc002vqm.2_Missense_Mutation_p.A505T|SP140_uc010fxl.2_Missense_Mutation_p.A538T	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	565					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAGTGACAGAGCTGCACAGAA	0.398													11	20					0	0	0.080935	0	0
SP140L	93349	broad.mit.edu	37	2	231222634	231222635	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:231222634_231222635CC>TT	uc010fxm.1	+	3	313_314	c.222_223CC>TT	c.(220-225)TTCCTT>TTTTTT	p.L75F	SP140_uc010zma.1_RNA|SP140L_uc010fxn.1_5'UTR	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	75	HSR.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						CATTTCCATTCCTTGAGGGCCT	0.371													48	124					0	0	0.004672	0	0
DIS3L2	129563	broad.mit.edu	37	2	233128139	233128139	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:233128139C>T	uc010fxz.2	+	13	1924	c.1648C>T	c.(1648-1650)CGT>TGT	p.R550C	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	550							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		CGGCGCACTTCGTTTGGATCA	0.542													15	24					0	0	0.028581	0	0
CHRNG	1146	broad.mit.edu	37	2	233409160	233409160	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:233409160G>A	uc002vsx.1	+	10	1140	c.1119G>A	c.(1117-1119)CGG>CGA	p.R373R	CHRNG_uc010fye.1_Silent_p.R321R	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	373	Cytoplasmic (Potential).				muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		CCCAGTCCCGGCTACAGAATG	0.652													51	78					0	0	0.048971	0	0
INPP5D	3635	broad.mit.edu	37	2	234077951	234077952	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:234077951_234077952GG>AA	uc010zmo.1	+	13	1709_1710	c.1556_1557GG>AA	c.(1555-1557)GGG>GAA	p.G519E	INPP5D_uc010zmp.1_Missense_Mutation_p.G518E	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	519					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TTCTTTTTAGGGAACAAGGGAG	0.48													3	18					0	0	0.004672	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627473	234627473	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:234627473A>T	uc002vux.2	+	1	36	c.7A>T	c.(7-9)AGA>TGA	p.R3*	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Nonsense_Mutation_p.R3*	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	3					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	TGAGATGGCCAGAGGACTCCA	0.597											OREG0003834	type=REGULATORY REGION|Gene=UGT1A4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	22	19					0	0	0.076483	0	0
HJURP	55355	broad.mit.edu	37	2	234749390	234749390	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:234749390G>A	uc002vvg.2	-	8	2102	c.2036C>T	c.(2035-2037)CCT>CTT	p.P679L	HJURP_uc010znd.1_Missense_Mutation_p.P618L|HJURP_uc010zne.1_Missense_Mutation_p.P587L	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	679					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TCTTTTTGCAGGGAACTGATG	0.572													33	53					0	0	0.050027	0	0
HJURP	55355	broad.mit.edu	37	2	234749392	234749392	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:234749392G>C	uc002vvg.2	-	8	2100	c.2034C>G	c.(2032-2034)TTC>TTG	p.F678L	HJURP_uc010znd.1_Missense_Mutation_p.F617L|HJURP_uc010zne.1_Missense_Mutation_p.F586L	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	678					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TTTTTGCAGGGAACTGATGGT	0.577													34	53					0	0	0.054565	0	0
TRPM8	79054	broad.mit.edu	37	2	234905064	234905064	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:234905064C>T	uc002vvh.2	+	22	3074	c.3034C>T	c.(3034-3036)CCC>TCC	p.P1012S	TRPM8_uc010fyj.2_Missense_Mutation_p.P590S|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	1012	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CCTCAATATCCCCTTCCCCTT	0.522													25	49					0	0	0.099896	0	0
OR6B3	150681	broad.mit.edu	37	2	240984523	240984523	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:240984523G>T	uc010zoe.1	-	1	967	c.967C>A	c.(967-969)CAT>AAT	p.H323N	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		ATTTGGAGATGAAGTTCCAGA	0.418													61	90					1.7104e-27	1.74254e-27	0.048971	1	0
KIF1A	547	broad.mit.edu	37	2	241715312	241715312	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:241715312G>A	uc002vzy.2	-	11	1060	c.914C>T	c.(913-915)CCG>CTG	p.P305L	KIF1A_uc010fzk.2_Missense_Mutation_p.P305L|KIF1A_uc002vzz.1_Missense_Mutation_p.P305L	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	305	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		ATCTCGGTACGGAATGAAATC	0.572													21	22					0	0	0.091800	0	0
HDLBP	3069	broad.mit.edu	37	2	242181883	242181883	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr2:242181883C>T	uc002waz.2	-	17	2389	c.2161G>A	c.(2161-2163)GAG>AAG	p.E721K	HDLBP_uc002wba.2_Missense_Mutation_p.E721K|HDLBP_uc002wbb.2_Missense_Mutation_p.E673K	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	721	KH 8.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		ACCTTCTCCTCCGCCAGATGC	0.572													12	30					0	0	0.080935	0	0
PCNA	5111	broad.mit.edu	37	20	5099321	5099321	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:5099321G>A	uc002wlp.2	-	3	525	c.322C>T	c.(322-324)CAG>TAG	p.Q108*	PCNA_uc002wlq.2_Nonsense_Mutation_p.Q108*|PCNA_uc010zqs.1_Missense_Mutation_p.P138L	NM_182649	NP_872590	P12004	PCNA_HUMAN	proliferating cell nuclear antigen	108					cell proliferation|DNA strand elongation involved in DNA replication|mismatch repair|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|positive regulation of deoxyribonuclease activity|regulation of DNA replication|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair|translesion synthesis	cytoplasm|DNA replication factor C complex|microtubule cytoskeleton|nuclear replication fork|nucleoplasm|PCNA complex|PCNA-p21 complex	dinucleotide insertion or deletion binding|DNA polymerase processivity factor activity|MutLalpha complex binding|purine-specific mismatch base pair DNA N-glycosylase activity			lung(1)	1						ACTTTCTCCTGGTCTACCAAA	0.383								DNA_polymerases_(catalytic_subunits)					28	45					0	0	0.030593	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524043	24524043	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:24524043G>A	uc002wtw.1	+	2	943	c.310G>A	c.(310-312)GAC>AAC	p.D104N		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	104	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CTCCTGGGGGGACGGTGTGGC	0.637													29	68					0	0	0.069456	0	0
AHCY	191	broad.mit.edu	37	20	32879332	32879333	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:32879332_32879333GG>AA	uc002xai.2	-	5	589_590	c.450_451CC>TT	c.(448-453)ATCCGA>ATTTGA	p.R151*	AHCY_uc002xaj.2_Nonsense_Mutation_p.R123*	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	151					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						GAGATGCCTCGGATGCCTAAAC	0.431													30	35					0	0	0.004672	0	0
PHF20	51230	broad.mit.edu	37	20	34487325	34487325	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:34487325G>A	uc002xek.1	+	10	1427	c.1316G>A	c.(1315-1317)GGG>GAG	p.G439E	PHF20_uc002xei.1_Missense_Mutation_p.G439E|PHF20_uc010gfo.1_Missense_Mutation_p.G439E|PHF20_uc002xej.1_Missense_Mutation_p.G323E	NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	439					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GATGATTTTGGGTCATCTAAT	0.333													10	15					0	0	0.105934	0	0
RBL1	5933	broad.mit.edu	37	20	35675514	35675514	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:35675514G>A	uc002xgi.2	-	12	1626	c.1547C>T	c.(1546-1548)CCT>CTT	p.P516L	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.P516L	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	516	Domain A.|Pocket; binds T and E1A.				cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				AAAAGTACGAGGTGAGCTATA	0.373													10	29					0	0	0.105934	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991690	39991690	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:39991690C>T	uc002xjy.1	-	4	743	c.519G>A	c.(517-519)AGG>AGA	p.R173R		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	173						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CTGGGCCTTTCCTTCCTGGGA	0.562													7	2					0	0	0.029380	0	0
FAM65C	140876	broad.mit.edu	37	20	49225194	49225194	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:49225194C>T	uc002xvm.2	-	10	1072	c.754G>A	c.(754-756)GAG>AAG	p.E252K	FAM65C_uc010zyt.1_Missense_Mutation_p.E256K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.E252K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	252										ovary(2)	2						AAGGCCTTCTCCTCTTCGTCC	0.642													35	69					0	0	0.086207	0	0
BCAS4	55653	broad.mit.edu	37	20	49446846	49446846	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:49446846G>A	uc002xvq.2	+	3	347	c.283G>A	c.(283-285)GAA>AAA	p.E95K	BCAS4_uc002xvp.1_Missense_Mutation_p.E95K|BCAS4_uc002xvr.2_Missense_Mutation_p.E95K|BCAS4_uc002xvs.2_Missense_Mutation_p.E95K	NM_017843	NP_060313	Q8TDM0	BCAS4_HUMAN	breast carcinoma amplified sequence 4 isoform a	95						cytoplasm					0						GATCCTGGAGGAAAACATCCC	0.517													12	31					0	0	0.105934	0	0
ZBP1	81030	broad.mit.edu	37	20	56179783	56179783	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:56179783C>T	uc002xyo.2	-	8	1417	c.1136G>A	c.(1135-1137)CGA>CAA	p.R379Q	ZBP1_uc010gjm.2_Missense_Mutation_p.R378Q|ZBP1_uc002xyp.2_Missense_Mutation_p.R304Q	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	379						cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			ACCAATGTCTCGAGGAAAGTG	0.438													39	76					0	0	0.111260	0	0
ZNF831	128611	broad.mit.edu	37	20	57766864	57766864	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:57766864G>A	uc002yan.2	+	1	790	c.790G>A	c.(790-792)GAA>AAA	p.E264K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	264						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TGTGAGGACCGAAGCTGCTCC	0.657													31	64					0	0	0.041601	0	0
ZNF831	128611	broad.mit.edu	37	20	57766887	57766887	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:57766887C>T	uc002yan.2	+	1	813	c.813C>T	c.(811-813)TCC>TCT	p.S271S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	271						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GTCCAGGGTCCGCATTTGCCG	0.642													38	58					0	0	0.111260	0	0
DIDO1	11083	broad.mit.edu	37	20	61511969	61511969	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr20:61511969G>C	uc002ydr.1	-	16	5603	c.5339C>G	c.(5338-5340)CCG>CGG	p.P1780R	DIDO1_uc002yds.1_Missense_Mutation_p.P1780R	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1780	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TTCTGGAAACGGAGGGGCTGG	0.627													40	82					0	0	0.092188	0	0
TPTE	7179	broad.mit.edu	37	21	10943004	10943004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:10943004G>A	uc002yip.1	-	12	951	c.583C>T	c.(583-585)CGA>TGA	p.R195*	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Nonsense_Mutation_p.R177*|TPTE_uc002yir.1_Nonsense_Mutation_p.R157*|TPTE_uc010gkv.1_Nonsense_Mutation_p.R57*	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	195					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGTAGAAGTCGAAGTAAATGT	0.284													10	21					0	0	0.080935	0	0
TPTE	7179	broad.mit.edu	37	21	10998218	10998218	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:10998218G>A	uc002yis.1	-	11		c.2035C>T						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGGTCTGTATGGTTTCCTTTT	0.358													18	75					0	0	0.055883	0	0
BAGE2	85319	broad.mit.edu	37	21	11058324	11058324	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:11058324C>T	uc002yit.1	-	3	325	c.117_splice	c.e3-1	p.L39_splice	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATGCACATCGCTGAAAGGGGT	0.383													4	98					0	0	0.014758	0	0
APP	351	broad.mit.edu	37	21	27264135	27264135	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:27264135C>T	uc002ylz.2	-	17	2310	c.2110G>A	c.(2110-2112)GGA>AGA	p.G704R	APP_uc011acg.1_Missense_Mutation_p.G212R|APP_uc010glk.2_Missense_Mutation_p.G680R|APP_uc002yma.2_Missense_Mutation_p.G685R|APP_uc011ach.1_Missense_Mutation_p.G648R|APP_uc002ymb.2_Missense_Mutation_p.G629R|APP_uc010glj.2_Missense_Mutation_p.G573R|APP_uc011aci.1_Missense_Mutation_p.G594R	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	704	Helical; (Potential).	Implicated in free radical propagation (By similarity).		G->V: Reduced protein oxidation. No hippocampal neuron toxicity.	adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				ACCATGAGTCCAATGATTGCA	0.383													17	24					0	0	0.043863	0	0
DOPEY2	9980	broad.mit.edu	37	21	37591677	37591677	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:37591677A>G	uc002yvg.2	+	10	1216	c.1137A>G	c.(1135-1137)CAA>CAG	p.Q379Q	DOPEY2_uc011aeb.1_Silent_p.Q379Q	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	379					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CAGGGCCTCAAGTGGTTGGGA	0.393													34	78					0	0	0.069456	0	0
DOPEY2	9980	broad.mit.edu	37	21	37617576	37617576	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:37617576G>A	uc002yvg.2	+	19	3377	c.3298G>A	c.(3298-3300)GCC>ACC	p.A1100T	DOPEY2_uc011aeb.1_Missense_Mutation_p.A1049T|DOPEY2_uc002yvh.2_5'UTR	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1100					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AGACAGGACGGCCCACGGCGC	0.637													11	30					0	0	0.080935	0	0
MORC3	23515	broad.mit.edu	37	21	37747572	37747572	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:37747572T>C	uc002yvi.2	+	17	2874	c.2798T>C	c.(2797-2799)ATG>ACG	p.M933T		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	933					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						GTTGAACAAATGAGTGAAATC	0.308													17	25					0	0	0.038395	0	0
RIPK4	54101	broad.mit.edu	37	21	43176851	43176851	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:43176851G>A	uc002yzn.1	-	2	356	c.308C>T	c.(307-309)TCC>TTC	p.S103F		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	103						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity	p.S103F(1)		ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						CTTTTCCAGGGAGCCCGTCTC	0.587													25	36					0	0	0.030593	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45483584	45483585	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr21:45483584_45483585TC>CA	uc002zea.2	+	7	1125_1126	c.956_957TC>CA	c.(955-957)CTC>CCA	p.L319P	TRAPPC10_uc010gpo.2_Missense_Mutation_p.L30P	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	319					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						ACCTTGCTGCTCTTCCTGCAGA	0.574													32	55					0	0	0.004672	0	0
XKR3	150165	broad.mit.edu	37	22	17288658	17288658	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:17288658C>T	uc002zlv.2	-	2	404	c.306G>A	c.(304-306)TGG>TGA	p.W102*	XKR3_uc011agf.1_Nonsense_Mutation_p.W102*	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	102	Helical; (Potential).					integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GAAGAATGTGCCAAAAAAGTA	0.338													15	32					0	0	0.033300	0	0
GAB4	128954	broad.mit.edu	37	22	17447143	17447143	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:17447143A>G	uc002zlw.2	-	6	1243	c.1135T>C	c.(1135-1137)TCC>CCC	p.S379P	GAB4_uc010gqs.1_3'UTR	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	379										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				ACACCCTGGGAATCATCGCCT	0.592													15	20					0	0	0.020292	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562													3	8					0	0	0.004672	0	0
BCR	613	broad.mit.edu	37	22	23652513	23652513	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:23652513C>T	uc002zww.2	+	18	3671	c.3075C>T	c.(3073-3075)ATC>ATT	p.I1025I	BCR_uc002zwx.2_Silent_p.I981I|BCR_uc011aiy.1_Silent_p.I614I	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1025					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TACTGTAGATCGAAGTAAAGC	0.527			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								12	42					0	0	0.062417	0	0
RGL4	266747	broad.mit.edu	37	22	24034700	24034700	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:24034700G>A	uc002zxn.2	+	2	1528	c.358G>A	c.(358-360)GAG>AAG	p.E120K	LOC91316_uc002zxh.3_RNA|LOC91316_uc002zxi.3_RNA|LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Missense_Mutation_p.E120K|RGL4_uc002zxp.1_5'UTR|RGL4_uc002zxq.2_5'UTR	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	120	Pro-rich.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						GGAGCCCAACGAGGCCAAGCC	0.567													16	27					0	0	0.024245	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688708	26688708	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:26688708G>A	uc003acb.2	+	2	587	c.431G>A	c.(430-432)AGG>AAG	p.R144K	SEZ6L_uc003acc.2_Missense_Mutation_p.R144K|SEZ6L_uc011akc.1_Missense_Mutation_p.R144K|SEZ6L_uc003acd.2_Missense_Mutation_p.R144K|SEZ6L_uc011akd.1_Missense_Mutation_p.R144K|SEZ6L_uc003ace.2_Missense_Mutation_p.R144K|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	144	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ACTGTCCAAAGGGCAGGGTCC	0.667													11	21					0	0	0.024245	0	0
SEC14L4	284904	broad.mit.edu	37	22	30886159	30886159	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:30886159G>A	uc003aid.2	-	12	1256	c.1156C>T	c.(1156-1158)CCC>TCC	p.P386S	SEC14L4_uc011akz.1_Intron|SEC14L4_uc003aie.2_Missense_Mutation_p.P371S|SEC14L4_uc003aif.2_Silent_p.F346F	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	386						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	GCCTTGTCGGGAAGCAGCACC	0.587													17	32					0	0	0.038395	0	0
SEC14L4	284904	broad.mit.edu	37	22	30899736	30899736	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:30899736G>A	uc003aid.2	-	2	158	c.58C>T	c.(58-60)CGG>TGG	p.R20W	SEC14L4_uc011akz.1_Missense_Mutation_p.R20W|SEC14L4_uc003aie.2_5'UTR|SEC14L4_uc003aif.2_5'UTR	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	20						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AGGTTCTCCCGGAACTGAGCG	0.627													15	40					0	0	0.033300	0	0
PATZ1	23598	broad.mit.edu	37	22	31722980	31722980	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:31722980G>A	uc003akq.2	-	5	2622	c.1961C>T	c.(1960-1962)TCT>TTT	p.S654F	PATZ1_uc003akp.2_3'UTR|PATZ1_uc003akr.2_Missense_Mutation_p.S608F	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	654					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						CTCGAGGAGAGACATGTTCTG	0.567													29	47					0	0	0.030593	0	0
MB	4151	broad.mit.edu	37	22	36013287	36013287	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:36013287C>T	uc003anz.2	-	1	98	c.18G>A	c.(16-18)GGG>GGA	p.G6G	MB_uc003aoa.2_Silent_p.G6G|MB_uc003aob.2_Silent_p.G6G	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	6							heme binding|oxygen transporter activity				0						ACTGCCATTCCCCGTCGCTGA	0.577													21	49					0	0	0.055883	0	0
EIF3L	51386	broad.mit.edu	37	22	38271940	38271940	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:38271940C>T	uc003auf.2	+	10	1086	c.999C>T	c.(997-999)ATC>ATT	p.I333I	EIF3L_uc003aue.1_Silent_p.I333I|EIF3L_uc011ann.1_Silent_p.I285I|EIF3L_uc003aug.2_Silent_p.I225I|EIF3L_uc003auh.2_Silent_p.I66I	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	333						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						AGGATGCCATCCGGGTCTTCG	0.502													77	117					0	0	0.048971	0	0
RANGAP1	5905	broad.mit.edu	37	22	41660835	41660835	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:41660835C>T	uc003azs.2	-	4	1783	c.313G>A	c.(313-315)GAA>AAA	p.E105K	RANGAP1_uc003azt.2_Missense_Mutation_p.E105K|RANGAP1_uc003azu.2_Missense_Mutation_p.E105K|RANGAP1_uc011aoz.1_Missense_Mutation_p.E95K	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	105					mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						ATGAGTCCTTCCCCTAGTGAG	0.567													24	55					0	0	0.108266	0	0
EFCAB6	64800	broad.mit.edu	37	22	44028112	44028112	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:44028112G>A	uc003bdy.1	-	19	2320	c.2105C>T	c.(2104-2106)CCA>CTA	p.P702L	EFCAB6_uc003bdz.1_Missense_Mutation_p.P550L|EFCAB6_uc010gzi.1_Missense_Mutation_p.P550L|EFCAB6_uc010gzj.1_5'UTR|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	702					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CCCTCTCATTGGAGGATCTGG	0.393													43	82					0	0	0.042209	0	0
C22orf9	23313	broad.mit.edu	37	22	45599724	45599724	+	Splice_Site	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:45599724A>C	uc003bfx.1	-	6	723	c.657_splice	c.e6+1	p.R219_splice	C22orf9_uc010gzw.1_Splice_Site_p.R71_splice|C22orf9_uc003bfv.1_Splice_Site_p.R228_splice|C22orf9_uc003bfw.1_Splice_Site_p.R224_splice|C22orf9_uc010gzx.2_Splice_Site_p.R201_splice|MIR1249_hsa-mir-1249|MI0006384_5'Flank	NM_001009880	NP_001009880	Q6ICG6	K0930_HUMAN	hypothetical protein LOC23313 isoform b								protein binding				0		Ovarian(80;0.00965)|all_neural(38;0.0244)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|READ - Rectum adenocarcinoma(1;0.000617)|Colorectal(1;0.0024)		CCCCGCACTCACCCGGTTGTC	0.642													13	14					0	0	0.105934	0	0
PPARA	5465	broad.mit.edu	37	22	46628087	46628087	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:46628087G>A	uc003bgw.1	+	8	1376	c.1110G>A	c.(1108-1110)CTG>CTA	p.L370L	PPARA_uc003bgx.1_Silent_p.L370L|PPARA_uc010hab.1_Silent_p.L370L|PPARA_uc003bhb.1_Silent_p.L370L|PPARA_uc010hac.1_Silent_p.L167L	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	370	Ligand-binding.|Required for heterodimerization with RXRA.			L->R: Abolishes heterodimerizazion with RXRA. No DNA binding.	fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	CACTGGAACTGGATGACAGTG	0.428													55	79					0	0	0.048971	0	0
PKDREJ	10343	broad.mit.edu	37	22	46656235	46656235	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:46656235C>T	uc003bhh.2	-	1	2985	c.2985G>A	c.(2983-2985)AGG>AGA	p.R995R		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	995	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CCAGAACCTCCCTAAGCACTG	0.522													39	85					0	0	0.086207	0	0
BRD1	23774	broad.mit.edu	37	22	50217580	50217580	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr22:50217580G>A	uc003biv.2	-	1	873	c.386C>T	c.(385-387)CCT>CTT	p.P129L	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Missense_Mutation_p.P129L|BRD1_uc011arh.1_Missense_Mutation_p.P129L|BRD1_uc003biu.3_Missense_Mutation_p.P129L	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	129					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GGCGGACGGAGGGCTGTACTC	0.632													43	56					0	0	0.039052	0	0
CNTN4	152330	broad.mit.edu	37	3	2787337	2787337	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:2787337C>T	uc003bpc.2	+	5	535	c.314C>T	c.(313-315)TCG>TTG	p.S105L	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.S105L	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	105	Ig-like C2-type 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GCGACAAACTCGTTTGGAACA	0.408													28	36					0	0	0.037714	0	0
CPNE9	151835	broad.mit.edu	37	3	9771352	9771352	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:9771352G>A	uc003bsd.2	+	20	1809	c.1638G>A	c.(1636-1638)CCG>CCA	p.P546P	BRPF1_uc003bse.2_5'Flank|BRPF1_uc003bsf.2_5'Flank|BRPF1_uc003bsg.2_5'Flank|BRPF1_uc011ati.1_5'Flank	NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	546										ovary(2)	2	Medulloblastoma(99;0.227)					ACCCCAGCCCGATCCCAGCTC	0.617													13	19					0	0	0.028581	0	0
FANCD2	2177	broad.mit.edu	37	3	10091094	10091094	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:10091094G>A	uc003buw.2	+	17	1528	c.1450G>A	c.(1450-1452)GGG>AGG	p.G484R	FANCD2_uc003bux.1_Missense_Mutation_p.G484R|FANCD2_uc003buy.1_Missense_Mutation_p.G484R|FANCD2_uc010hcw.1_RNA	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	484					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		TATCTGCAGTGGGAATGAAGC	0.418			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				15	215					0	0	0.076483	0	0
FANCD2	2177	broad.mit.edu	37	3	10106090	10106090	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:10106090G>A	uc003buw.2	+	22	2076	c.1998G>A	c.(1996-1998)GTG>GTA	p.V666V	FANCD2_uc003bux.1_Silent_p.V666V|FANCD2_uc003buy.1_Silent_p.V666V|FANCD2_uc010hcw.1_RNA	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	666					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		CCTTCGTAGTGGACTCCTGTG	0.433			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				23	200					0	0	0.048971	0	0
STT3B	201595	broad.mit.edu	37	3	31674613	31674613	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:31674613C>T	uc011axe.1	+	15	2374	c.2374C>T	c.(2374-2376)CCA>TCA	p.P792S		NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	792					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						CAACATTTTCCCAAAACAGAA	0.378													6	10					0	0	0.029380	0	0
GLB1	2720	broad.mit.edu	37	3	33055744	33055744	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:33055744G>A	uc003cfi.1	-	15	1655	c.1538C>T	c.(1537-1539)CCA>CTA	p.P513L	GLB1_uc003cfh.1_Missense_Mutation_p.P483L|GLB1_uc003cfj.1_Missense_Mutation_p.P382L|GLB1_uc011axk.1_Missense_Mutation_p.P561L	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	513					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				AGTGTCCAGTGGAAAGATCGT	0.562													15	26					0	0	0.028581	0	0
DCLK3	85443	broad.mit.edu	37	3	36778887	36778887	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:36778887C>T	uc003cgi.2	-	2	1755	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	422	Protein kinase.		E -> K (in a colorectal adenocarcinoma sample; somatic mutation).			cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity	p.E422K(1)		lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						ATGTCTGTTTCGTAGACTTCA	0.507													29	43					0	0	0.034045	0	0
TRANK1	9881	broad.mit.edu	37	3	36873951	36873951	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:36873951C>T	uc003cgj.2	-	12	5643	c.5341G>A	c.(5341-5343)GGG>AGG	p.G1781R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2331					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGCCTCTCCCCCTGCCCCTT	0.502													47	70					0	0	0.048971	0	0
XIRP1	165904	broad.mit.edu	37	3	39228484	39228484	+	Missense_Mutation	SNP	C	T	T	rs145488377	byFrequency	TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:39228484C>T	uc003cjk.1	-	2	2674	c.2453G>A	c.(2452-2454)CGA>CAA	p.R818Q	XIRP1_uc003cji.2_Missense_Mutation_p.R818Q|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	818							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CTCCTCCTTTCGTATATAAGG	0.617													33	43					0	0	0.054565	0	0
VIPR1	7433	broad.mit.edu	37	3	42567408	42567408	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:42567408G>A	uc003clf.2	+	4	446	c.322G>A	c.(322-324)GAA>AAA	p.E108K	VIPR1_uc011azl.1_Missense_Mutation_p.E61K|VIPR1_uc011azm.1_5'UTR|VIPR1_uc011azn.1_Missense_Mutation_p.E81K	NM_004624	NP_004615	P32241	VIPR1_HUMAN	vasoactive intestinal peptide receptor 1	108	Extracellular (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|muscle contraction|positive regulation of cell proliferation|synaptic transmission	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.241)		CTGCACCGACGAAGGCTGGAC	0.647													8	14					0	0	0.069234	0	0
CCR5	1234	broad.mit.edu	37	3	46414753	46414753	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:46414753C>T	uc003cpo.3	+	3	482	c.360C>T	c.(358-360)ATC>ATT	p.I120I	CCR5_uc010hjd.2_Silent_p.I120I	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	120	Helical; Name=3; (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	TCTTCATCATCCTCCTGACAA	0.483													71	165					0	0	0.048971	0	0
CELSR3	1951	broad.mit.edu	37	3	48683241	48683241	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:48683241G>A	uc003cul.2	-	23	7805	c.7524C>T	c.(7522-7524)TCC>TCT	p.S2508S	CELSR3_uc003cuf.1_Silent_p.S2578S|CELSR3_uc010hkf.2_5'Flank|CELSR3_uc010hkg.2_Silent_p.S491S	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2508	Extracellular (Potential).|GPS.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACCGTGCGTGGGACCCATTCC	0.637													15	23					0	0	0.020292	0	0
CELSR3	1951	broad.mit.edu	37	3	48697088	48697088	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:48697088C>T	uc003cul.2	-	1	3261	c.2980G>A	c.(2980-2982)GGC>AGC	p.G994S	CELSR3_uc003cuf.1_Missense_Mutation_p.G1064S	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	994	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGACCCGGCCATTGGCATGA	0.547													16	21					0	0	0.038395	0	0
MST1R	4486	broad.mit.edu	37	3	49940161	49940161	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:49940161C>T	uc003cxy.3	-	1	1146	c.882G>A	c.(880-882)CGG>CGA	p.R294R	MST1R_uc011bdd.1_Silent_p.R294R|MST1R_uc011bde.1_Silent_p.R294R|MST1R_uc011bdf.1_Silent_p.R294R|MST1R_uc011bdg.1_Silent_p.R294R	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	294	Extracellular (Potential).|Sema.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		GGACCAGCTCCCGATAGTCAC	0.652													44	68					0	0	0.048971	0	0
RBM6	10180	broad.mit.edu	37	3	50112638	50112638	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:50112638C>T	uc003cyc.2	+	20	3254	c.3121C>T	c.(3121-3123)CGT>TGT	p.R1041C	RBM6_uc003cyd.2_Missense_Mutation_p.R519C|RBM6_uc003cye.2_Missense_Mutation_p.R519C|RBM6_uc011bdi.1_Missense_Mutation_p.R383C|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	1041					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		TTGCAGTGATCGTAAACTTGT	0.328													19	26					0	0	0.038395	0	0
IQCF3	401067	broad.mit.edu	37	3	51864773	51864773	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:51864773C>T	uc010hlx.1	+	5	762	c.421C>T	c.(421-423)CCT>TCT	p.P141S	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	141										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ATATGCAATCCCTTCAAAGCA	0.483													23	36					0	0	0.069288	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054583	67054583	+	Missense_Mutation	SNP	C	T	T	rs149863845		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:67054583C>T	uc003dmy.2	+	3	1245	c.1192C>T	c.(1192-1194)CGT>TGT	p.R398C	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	398	Kelch 2.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AATCGGAGGTCGTGTTTATGA	0.443													34	78					0	0	0.064281	0	0
CADM2	253559	broad.mit.edu	37	3	85961618	85961618	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:85961618G>A	uc003dqj.2	+	5	1224	c.598G>A	c.(598-600)GCG>ACG	p.A200T	CADM2_uc003dqk.2_Missense_Mutation_p.A209T|CADM2_uc003dql.2_Missense_Mutation_p.A202T	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	200	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TGATGGAGTGGCGGTCATCTG	0.478													16	22					0	0	0.024245	0	0
OR5K4	403278	broad.mit.edu	37	3	98072976	98072976	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:98072976C>T	uc011bgv.1	+	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GAATTATTTCCCTGTATGAAT	0.433													71	153					0	0	0.048971	0	0
FILIP1L	11259	broad.mit.edu	37	3	99569486	99569486	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:99569486C>T	uc003dtm.2	-	5	1497	c.1034G>A	c.(1033-1035)CGA>CAA	p.R345Q	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.R345Q|FILIP1L_uc010hpf.2_Intron|FILIP1L_uc010hpg.2_Missense_Mutation_p.R105Q|FILIP1L_uc003dtn.2_Missense_Mutation_p.R105Q|FILIP1L_uc003dtp.1_Missense_Mutation_p.R105Q	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	345	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TTCTGCTTTTCGTAAAGACCT	0.443													51	103					0	0	0.048971	0	0
MORC1	27136	broad.mit.edu	37	3	108719488	108719488	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:108719488C>T	uc003dxl.2	-	21	2190	c.2103G>A	c.(2101-2103)ATG>ATA	p.M701I	MORC1_uc011bhn.1_Missense_Mutation_p.M680I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	701					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						GCTTCCTTTTCATTTCCCAAG	0.363													17	59					0	0	0.028581	0	0
PHLDB2	90102	broad.mit.edu	37	3	111632298	111632298	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:111632298G>A	uc010hqa.2	+	3	1879	c.1468G>A	c.(1468-1470)GAT>AAT	p.D490N	PHLDB2_uc003dyc.2_Missense_Mutation_p.D517N|PHLDB2_uc003dyd.2_Missense_Mutation_p.D490N|PHLDB2_uc003dyg.2_Missense_Mutation_p.D490N|PHLDB2_uc003dyh.2_Missense_Mutation_p.D490N|PHLDB2_uc003dyi.2_Missense_Mutation_p.D76N|PHLDB2_uc003dyf.3_Missense_Mutation_p.D490N	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	490						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GCAGCTCTCTGATGAGGAGTC	0.522													41	73					0	0	0.092188	0	0
KIAA2018	205717	broad.mit.edu	37	3	113374138	113374138	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:113374138G>A	uc003eam.2	-	7	6802	c.6391C>T	c.(6391-6393)CCT>TCT	p.P2131S	KIAA2018_uc003eal.2_Missense_Mutation_p.P2075S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	2131					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						ATCTGATTAGGAAAATAGGGG	0.428													28	46					0	0	0.037714	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113634601	113634601	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:113634601C>T	uc003eaq.3	+	10	1082	c.1006C>T	c.(1006-1008)CAT>TAT	p.H336Y	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.H169Y|GRAMD1C_uc003eas.2_Missense_Mutation_p.H131Y|GRAMD1C_uc003eat.2_5'UTR	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	336						integral to membrane				ovary(2)|skin(1)	3						CCGTATTTTTCATATCAGTGC	0.338													27	41					0	0	0.037714	0	0
GOLGB1	2804	broad.mit.edu	37	3	121409709	121409709	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:121409709G>A	uc003eei.3	-	14	8613	c.8487C>T	c.(8485-8487)AAC>AAT	p.N2829N	GOLGB1_uc010hrc.2_Silent_p.N2834N|GOLGB1_uc003eej.3_Silent_p.N2795N	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2829	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ACTGCACTTGGTTATAAGAAT	0.443													7	17					0	0	0.038147	0	0
CASR	846	broad.mit.edu	37	3	121976030	121976030	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:121976030G>A	uc003eev.3	+	3	660	c.288G>A	c.(286-288)AGG>AGA	p.R96R	CASR_uc003eew.3_Silent_p.R96R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	96	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGGGATACAGGATATTTGACA	0.443													34	62					0	0	0.064281	0	0
CASR	846	broad.mit.edu	37	3	121980875	121980875	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:121980875G>A	uc003eev.3	+	4	1365	c.993G>A	c.(991-993)CGG>CGA	p.R331R	CASR_uc003eew.3_Silent_p.R331R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	331	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CAGGCTTCCGGGAATTCCTGA	0.547													19	33					0	0	0.038395	0	0
CASR	846	broad.mit.edu	37	3	121981059	121981059	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:121981059C>T	uc003eev.3	+	4	1549	c.1177C>T	c.(1177-1179)CCC>TCC	p.P393S	CASR_uc003eew.3_Missense_Mutation_p.P393S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	393	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGCCTTCCGACCCCTCTGTAC	0.493													25	41					0	0	0.108266	0	0
PARP14	54625	broad.mit.edu	37	3	122399742	122399742	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:122399742C>T	uc003efq.3	+	1	71	c.12C>T	c.(10-12)CCC>CCT	p.P4P		NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		TGGCTGTGCCCGGCTCCTTCC	0.632													7	7					0	0	0.038147	0	0
MYLK	4638	broad.mit.edu	37	3	123451887	123451887	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:123451887C>T	uc003ego.2	-	11	1654	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	MYLK_uc011bjw.1_Missense_Mutation_p.E458K|MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Missense_Mutation_p.E458K|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Missense_Mutation_p.E282K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	458	Ig-like C2-type 3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ATGCTGCCTTCCTGTCTCCTC	0.567													21	20					0	0	0.062417	0	0
CCDC14	64770	broad.mit.edu	37	3	123663826	123663826	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:123663826T>C	uc011bjx.1	-	9	1448	c.1357A>G	c.(1357-1359)ATT>GTT	p.I453V	CCDC14_uc003egv.3_Missense_Mutation_p.I94V|CCDC14_uc003egx.3_Missense_Mutation_p.I253V|CCDC14_uc010hrt.2_Missense_Mutation_p.I412V|CCDC14_uc003egy.3_Missense_Mutation_p.I253V|CCDC14_uc003egz.2_Missense_Mutation_p.I253V	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	453						centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		AACCTCTGAATTTCTGAATCC	0.318													11	23					0	0	0.020292	0	0
UROC1	131669	broad.mit.edu	37	3	126202270	126202270	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:126202270C>T	uc003eiz.1	-	19	1864	c.1832G>A	c.(1831-1833)GGT>GAT	p.G611D	UROC1_uc010hsi.1_Missense_Mutation_p.G671D	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	611					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CTCCGGGGTACCGTCCAGCAC	0.627													8	32					0	0	0.047766	0	0
MCM2	4171	broad.mit.edu	37	3	127335869	127335869	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:127335869C>T	uc003ejp.2	+	10	1738	c.1681C>T	c.(1681-1683)CAG>TAG	p.Q561*	MCM2_uc011bkm.1_Nonsense_Mutation_p.Q431*|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Nonsense_Mutation_p.Q514*	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	561	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						GGCGTATGTCCAGCGGCACCC	0.592													62	77					0	0	0.048971	0	0
COL6A6	131873	broad.mit.edu	37	3	130292970	130292971	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:130292970_130292971CC>TT	uc010htl.2	+	7	3179_3180	c.3148_3149CC>TT	c.(3148-3150)CCG>TTG	p.P1050L		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1050	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TACCTATCACCCGGAGTTTCCA	0.436													12	27					0	0	0.004672	0	0
CPNE4	131034	broad.mit.edu	37	3	131624237	131624237	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:131624237G>A	uc003eok.2	-	2	486	c.51C>T	c.(49-51)ATC>ATT	p.I17I	CPNE4_uc011blq.1_Silent_p.I35I|CPNE4_uc003eol.2_Silent_p.I35I|CPNE4_uc003eom.2_Silent_p.I17I	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	17										upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GGCTGTTAAAGATTCCCAGTG	0.458													16	25					0	0	0.028581	0	0
EPHB1	2047	broad.mit.edu	37	3	134851608	134851608	+	Silent	SNP	C	T	T	rs113043235		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:134851608C>T	uc003eqt.2	+	5	1234	c.1014C>T	c.(1012-1014)ATC>ATT	p.I338I	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.S227L|EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	338	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						AGACGTCCATCATTCTGGAGT	0.562													16	26					0	0	0.024245	0	0
A4GNT	51146	broad.mit.edu	37	3	137843631	137843631	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:137843631C>T	uc003ers.2	-	3	700	c.498G>A	c.(496-498)ATG>ATA	p.M166I		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	166	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						CATCGGTGTCCATGTAGATGC	0.547													156	306					0	0	0.048971	0	0
NMNAT3	349565	broad.mit.edu	37	3	139297773	139297773	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:139297773G>A	uc003etj.2	-	2	274	c.234C>T	c.(232-234)ATC>ATT	p.I78I	NMNAT3_uc003etk.2_Silent_p.I41I|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	78					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						GGTCCACCCGGATCCAGTCGG	0.587													9	33					0	0	0.069234	0	0
XRN1	54464	broad.mit.edu	37	3	142037515	142037516	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:142037515_142037516GG>AA	uc003eus.2	-	39	4603_4604	c.4536_4537CC>TT	c.(4534-4539)TTCCCT>TTTTCT	p.P1513S	XRN1_uc010huu.2_Missense_Mutation_p.P980S|XRN1_uc003eut.2_Missense_Mutation_p.P1513S|XRN1_uc003euu.2_Missense_Mutation_p.P1514S	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1513					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						GAAGGCAAAGGGAAATTCATGC	0.376													12	27					0	0	0.004672	0	0
ATR	545	broad.mit.edu	37	3	142269040	142269040	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:142269040C>G	uc003eux.3	-	14	3032	c.2910G>C	c.(2908-2910)ATG>ATC	p.M970I		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	970					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TATTTAAAGCCATTTCTCTCT	0.418								Other_conserved_DNA_damage_response_genes					23	29					0	0	0.062417	0	0
SLC9A9	285195	broad.mit.edu	37	3	143292979	143292979	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:143292979G>A	uc003evn.2	-	8	1133	c.951C>T	c.(949-951)TTC>TTT	p.F317F		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	317	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						AAGAAAGCAGGAAAAACAGGC	0.498													13	31					0	0	0.020292	0	0
HPS3	84343	broad.mit.edu	37	3	148877926	148877926	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:148877926C>T	uc003ewu.1	+	11	2106	c.1966C>T	c.(1966-1968)CCT>TCT	p.P656S	HPS3_uc011bnq.1_Missense_Mutation_p.P491S|HPS3_uc003ewv.1_RNA	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	656						cytoplasm		p.P656L(1)		ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			GAATATTAATCCTTTAACTGC	0.423									Hermansky-Pudlak_syndrome				35	53					0	0	0.059317	0	0
MED12L	116931	broad.mit.edu	37	3	150911323	150911323	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:150911323C>T	uc003eyp.2	+	14	2053	c.2015C>T	c.(2014-2016)TCG>TTG	p.S672L	MED12L_uc011bnz.1_Missense_Mutation_p.S532L|MED12L_uc003eyn.2_Missense_Mutation_p.S707L|MED12L_uc003eyo.2_Missense_Mutation_p.S672L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	672					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCCAACACTTCGTTGGGCAGA	0.388													10	32					0	0	0.069234	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598668	151598668	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:151598668C>T	uc003ezf.1	+	3	436	c.337C>T	c.(337-339)CTC>TTC	p.L113F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	113	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	CATTCTCTTTCTCACTTTTAT	0.393													24	30					0	0	0.083992	0	0
TIPARP	25976	broad.mit.edu	37	3	156395964	156395964	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:156395964C>T	uc003fav.2	+	2	726	c.478C>T	c.(478-480)CAG>TAG	p.Q160*	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Nonsense_Mutation_p.Q160*	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	160							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			AGCTCACTTCCAGACTGATCT	0.463													33	62					0	0	0.041601	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906327	164906327	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:164906327C>T	uc003fej.3	-	2	2736	c.2292G>A	c.(2290-2292)GTG>GTA	p.V764V	SLITRK3_uc003fek.2_Silent_p.V764V	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	764	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ATGAAACAGCCACCTCCTCCT	0.577										HNSCC(40;0.11)			39	55					0	0	0.042209	0	0
PRKCI	5584	broad.mit.edu	37	3	170009647	170009647	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:170009647A>G	uc003fgs.2	+	13	1447	c.1209A>G	c.(1207-1209)GGA>GGG	p.G403G	PRKCI_uc003fgt.2_5'UTR	NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	403	Protein kinase.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AAAAGGAAGGATTACGGCCAG	0.328													14	13					0	0	0.033300	0	0
MAP3K13	9175	broad.mit.edu	37	3	185191163	185191163	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:185191163C>T	uc010hyf.2	+	12	2310	c.2044C>T	c.(2044-2046)CCA>TCA	p.P682S	MAP3K13_uc011brt.1_Missense_Mutation_p.P475S|MAP3K13_uc011bru.1_Missense_Mutation_p.P538S|MAP3K13_uc003fpi.2_Missense_Mutation_p.P682S|MAP3K13_uc010hyg.2_Missense_Mutation_p.P372S	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	682					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CCTGCGGAGCCCACTCAGCAA	0.592													30	60					0	0	0.050027	0	0
FGF12	2257	broad.mit.edu	37	3	192125916	192125916	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:192125916G>A	uc003fsx.2	-	1	923	c.97C>T	c.(97-99)CCC>TCC	p.P33S	FGF12_uc003fsy.2_Intron	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	33	Bipartite nuclear localization signal (Potential).				cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TCTTTGCTGGGGCTGGAGCGG	0.677													48	58					0	0	0.048971	0	0
CPN2	1370	broad.mit.edu	37	3	194062366	194062366	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:194062366G>A	uc003fts.2	-	2	1156	c.1066C>T	c.(1066-1068)CTC>TTC	p.L356F		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	356	LRR 11.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		TTCTGGAAGAGGGCTGGGTGC	0.562													17	51					0	0	0.043863	0	0
ZNF595	152687	broad.mit.edu	37	4	59339	59339	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:59339G>A	uc003fzv.1	+	2	176	c.20G>A	c.(19-21)AGG>AAG	p.R7K	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Missense_Mutation_p.R7K|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	7					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		GTAACATTCAGGGATGTGGCC	0.418													15	292					0	0	0.038395	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435343	7435343	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:7435343C>T	uc011bwj.1	-	1	1358	c.1264G>A	c.(1264-1266)GCC>ACC	p.A422T	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	422	Saposin B-type 4.				sphingolipid metabolic process	extracellular region|lysosome					0						CCCTTGAAGGCCACCAGGATG	0.587													7	13					0	0	0.029380	0	0
SORCS2	57537	broad.mit.edu	37	4	7684478	7684478	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:7684478G>A	uc003gkb.3	+	10	1350	c.1350G>A	c.(1348-1350)GGG>GGA	p.G450G	SORCS2_uc011bwi.1_Silent_p.G278G	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	450	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						AGGTCAGAGGGGTGAAAGGAG	0.388													7	12					0	0	0.038147	0	0
SLIT2	9353	broad.mit.edu	37	4	20620541	20620541	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:20620541G>A	uc003gpr.1	+	37	4703	c.4499G>A	c.(4498-4500)CGG>CAG	p.R1500Q	SLIT2_uc003gps.1_Missense_Mutation_p.R1492Q	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1500	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AGCAAGCGGCGGAAATACTCT	0.557													14	34					0	0	0.105934	0	0
KLB	152831	broad.mit.edu	37	4	39409134	39409134	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:39409134C>T	uc003gua.2	+	1	662	c.565C>T	c.(565-567)CCT>TCT	p.P189S	KLB_uc011byj.1_Missense_Mutation_p.P189S	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	189	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						AAACATTGAACCTATAGTTAC	0.413													22	36					0	0	0.062417	0	0
ATP8A1	10396	broad.mit.edu	37	4	42424886	42424886	+	Silent	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:42424886G>C	uc003gwr.2	-	35	3475	c.3243C>G	c.(3241-3243)GTC>GTG	p.V1081V	ATP8A1_uc003gwq.2_Silent_p.V307V|ATP8A1_uc003gws.2_Silent_p.V1066V	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1081	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GAACTTCATCGACCAATGTTT	0.358													42	85					0	0	0.048971	0	0
GABRA2	2555	broad.mit.edu	37	4	46252457	46252457	+	Silent	SNP	C	T	T	rs145736784		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:46252457C>T	uc003gxc.3	-	9	1897	c.1224G>A	c.(1222-1224)AAG>AAA	p.K408K	GABRA2_uc010igc.2_Silent_p.K408K|GABRA2_uc011bzc.1_Silent_p.K413K	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	408	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity	p.K408K(1)		ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGAAAGTTTTCTTTGCTTCAG	0.398													80	131					0	0	0.048971	0	0
GABRA2	2555	broad.mit.edu	37	4	46264123	46264123	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:46264123C>T	uc003gxc.3	-	8	1552	c.879G>A	c.(877-879)ATG>ATA	p.M293I	GABRA2_uc010igc.2_Missense_Mutation_p.M293I|GABRA2_uc011bzc.1_Missense_Mutation_p.M238I|GABRA2_uc003gxe.2_Missense_Mutation_p.M293I	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	293	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTAGAGTTGTCATTGTTAGGA	0.423													13	24					0	0	0.105934	0	0
GABRA2	2555	broad.mit.edu	37	4	46305590	46305590	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:46305590C>T	uc003gxc.3	-	7	1416	c.743G>A	c.(742-744)AGA>AAA	p.R248K	GABRA2_uc010igc.2_Missense_Mutation_p.R248K|GABRA2_uc011bzc.1_Missense_Mutation_p.R193K|GABRA2_uc003gxe.2_Missense_Mutation_p.R248K	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	248	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CCCAATTTTTCTTTTCAGGTG	0.363													17	39					0	0	0.038395	0	0
NIPAL1	152519	broad.mit.edu	37	4	48036995	48036995	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:48036995C>T	uc003gxw.2	+	5	625	c.559C>T	c.(559-561)CAT>TAT	p.H187Y		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	187	Extracellular (Potential).					integral to membrane					0						GATGGTTATCCATGCCCCACA	0.393													11	33					0	0	0.080935	0	0
TEC	7006	broad.mit.edu	37	4	48140986	48140986	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:48140986T>C	uc003gxz.2	-	16	1680	c.1589A>G	c.(1588-1590)AAG>AGG	p.K530R		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	530	Protein kinase.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TGGACACCACTTCACAGGAAA	0.453													19	30					0	0	0.049695	0	0
LRRC66	339977	broad.mit.edu	37	4	52860732	52860732	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:52860732G>A	uc003gzi.2	-	4	2469	c.2456C>T	c.(2455-2457)CCG>CTG	p.P819L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	819						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GAACATGCCCGGAAACTCATC	0.463													19	34					0	0	0.049695	0	0
SPATA18	132671	broad.mit.edu	37	4	52927009	52927009	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:52927009C>T	uc003gzl.2	+	3	533	c.255C>T	c.(253-255)TCC>TCT	p.S85S	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.S85S|SPATA18_uc003gzk.1_Silent_p.S85S	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	85					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TGGAGGCTTCCTTTACTGCTG	0.403													14	41					0	0	0.024245	0	0
KDR	3791	broad.mit.edu	37	4	55948165	55948165	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:55948165A>T	uc003has.2	-	29	4108	c.3806T>A	c.(3805-3807)CTG>CAG	p.L1269Q	KDR_uc003hat.1_Missense_Mutation_p.L1269Q	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1269	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CAAAGTTTTCAGCTCTTCTGA	0.363			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			23	58					0	0	0.091800	0	0
POLR2B	5431	broad.mit.edu	37	4	57889516	57889516	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:57889516G>A	uc003hcl.1	+	19	2579	c.2536G>A	c.(2536-2538)GAC>AAC	p.D846N	POLR2B_uc011cae.1_Missense_Mutation_p.D839N|POLR2B_uc011caf.1_Missense_Mutation_p.D771N|POLR2B_uc003hcm.1_Missense_Mutation_p.D339N	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	846					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					TGCCATTTACGACAAGCTGGA	0.418													16	22					0	0	0.038395	0	0
UGT2B15	7366	broad.mit.edu	37	4	69536047	69536047	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:69536047C>T	uc011cal.1	-	1	328	c.290G>A	c.(289-291)TGG>TAG	p.W97*		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	97					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ACCATATATCCATCTATCGAG	0.284													43	60					0	0	0.104719	0	0
UGT2A3	79799	broad.mit.edu	37	4	69795746	69795746	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:69795746G>A	uc003hef.2	-	6	1400	c.1369C>T	c.(1369-1371)CGA>TGA	p.R457*	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	457	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AAGACTGCTCGATCTAGGGGC	0.448													29	40					0	0	0.054565	0	0
PROL1	58503	broad.mit.edu	37	4	71275345	71275345	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:71275345G>A	uc003hfi.2	+	3	474	c.300G>A	c.(298-300)CCG>CCA	p.P100P		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	100	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				GACTCTTTCCGGGTTATCCAA	0.403													60	87					0	0	0.048971	0	0
ENAM	10117	broad.mit.edu	37	4	71509727	71509727	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:71509727G>A	uc011caw.1	+	9	2865	c.2584G>A	c.(2584-2586)GAA>AAA	p.E862K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	862					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGGTCAAAAAGAAGCACATTT	0.448													20	32					0	0	0.055883	0	0
GK2	2712	broad.mit.edu	37	4	80328611	80328611	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:80328611C>T	uc003hlu.2	-	1	762	c.744G>A	c.(742-744)CTG>CTA	p.L248L		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	248					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GCACACCTTCCAGGGCTCCAG	0.448													35	73					0	0	0.074837	0	0
SPARCL1	8404	broad.mit.edu	37	4	88414891	88414891	+	Missense_Mutation	SNP	C	T	T	rs143716987		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:88414891C>T	uc010ikm.2	-	5	1633	c.1061G>A	c.(1060-1062)AGG>AAG	p.R354K	SPARCL1_uc011cdc.1_Missense_Mutation_p.R229K|SPARCL1_uc003hqs.3_Missense_Mutation_p.R354K|SPARCL1_uc011cdd.1_Missense_Mutation_p.R229K|SPARCL1_uc003hqt.2_Missense_Mutation_p.R354K	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	354					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TGCACTGTGCCTGGGGCCATC	0.433													17	35					0	0	0.043863	0	0
SPARCL1	8404	broad.mit.edu	37	4	88415124	88415124	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:88415124C>T	uc010ikm.2	-	5	1400	c.828G>A	c.(826-828)ATG>ATA	p.M276I	SPARCL1_uc011cdc.1_Missense_Mutation_p.M151I|SPARCL1_uc003hqs.3_Missense_Mutation_p.M276I|SPARCL1_uc011cdd.1_Missense_Mutation_p.M151I|SPARCL1_uc003hqt.2_Missense_Mutation_p.M276I	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	276					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TTTCCTCTTCCATTTCTGCAT	0.413													91	144					0	0	0.048971	0	0
DMP1	1758	broad.mit.edu	37	4	88583725	88583725	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:88583725G>A	uc003hqv.2	+	6	899	c.795G>A	c.(793-795)AGG>AGA	p.R265R	DMP1_uc003hqw.2_Silent_p.R249R	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	265					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		ATCCCAGTAGGAAAATTTTTA	0.433													10	18					0	0	0.069234	0	0
UNC5C	8633	broad.mit.edu	37	4	96199481	96199481	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:96199481C>T	uc003htp.1	-	4	677	c.523G>A	c.(523-525)GGA>AGA	p.G175R	UNC5C_uc010ilc.1_Missense_Mutation_p.G175R|UNC5C_uc003htq.2_Missense_Mutation_p.G175R	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	175	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		ACTTCCTTTCCTAGGGGTTCC	0.408													29	35					0	0	0.037714	0	0
C4orf17	84103	broad.mit.edu	37	4	100461583	100461583	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:100461583G>A	uc003huw.2	+	8	1174	c.851G>A	c.(850-852)GGA>GAA	p.G284E	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	284											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		TCAAGTCAAGGATCTGAAGAA	0.333													27	56					0	0	0.059317	0	0
TACR3	6870	broad.mit.edu	37	4	104577406	104577406	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:104577406T>C	uc003hxe.1	-	3	976	c.833A>G	c.(832-834)GAA>GGA	p.E278G		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	278	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TCCTGGGATTTCTCCTCCCCA	0.403													25	77					0	0	0.108266	0	0
ANK2	287	broad.mit.edu	37	4	114284612	114284612	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:114284612G>A	uc003ibe.3	+	40	10975	c.10875G>A	c.(10873-10875)GGG>GGA	p.G3625G	ANK2_uc003ibd.3_Silent_p.G1531G|ANK2_uc003ibf.3_Silent_p.G1540G|ANK2_uc011cgc.1_Silent_p.G716G|ANK2_uc003ibg.3_Silent_p.G524G|ANK2_uc003ibh.3_Silent_p.G214G|ANK2_uc011cgd.1_Silent_p.G927G	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3592	Death.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AGAGGGATGGGAAACATGCTA	0.408													25	34					0	0	0.041601	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951765	119951765	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:119951765C>T	uc003icm.3	+	4	2031	c.1835C>T	c.(1834-1836)CCC>CTC	p.P612L	SYNPO2_uc010ina.2_Missense_Mutation_p.P612L|SYNPO2_uc010inb.2_Missense_Mutation_p.P612L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.P540L	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	612	Pro-rich.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						ATGACGAGTCCCATTGCTGAC	0.572													37	62					0	0	0.098360	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952719	119952719	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:119952719C>T	uc003icm.3	+	4	2985	c.2789C>T	c.(2788-2790)TCG>TTG	p.S930L	SYNPO2_uc010ina.2_Missense_Mutation_p.S930L|SYNPO2_uc010inb.2_Missense_Mutation_p.S930L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.S858L	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	930						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CCTATCCACTCGCCGTCTTAC	0.542													18	37					0	0	0.049695	0	0
C4orf31	79625	broad.mit.edu	37	4	121966865	121966865	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:121966865G>A	uc003idq.1	-	2	655	c.128C>T	c.(127-129)TCG>TTG	p.S43L		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	43											0						AATTACTGACGAATCATGAAA	0.428													19	28					0	0	0.049695	0	0
SLC25A31	83447	broad.mit.edu	37	4	128685509	128685509	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:128685509G>A	uc003ifl.2	+	3	618	c.472G>A	c.(472-474)GGA>AGA	p.G158R		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	158	Solcar 2.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						TGTCGATATTGGAAAAGGTAT	0.383													22	43					0	0	0.108266	0	0
PCDH18	54510	broad.mit.edu	37	4	138449656	138449656	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:138449656G>A	uc003ihe.3	-	3	3103	c.2716C>T	c.(2716-2718)CTC>TTC	p.L906F	PCDH18_uc003ihf.3_Missense_Mutation_p.L898F|PCDH18_uc011cgz.1_Missense_Mutation_p.L117F|PCDH18_uc003ihg.3_Missense_Mutation_p.L685F|PCDH18_uc011cha.1_Missense_Mutation_p.L86F	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	906	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CCATCTGTGAGAAACAGGTCG	0.448													82	135					0	0	0.048971	0	0
HHIP	64399	broad.mit.edu	37	4	145580038	145580038	+	Missense_Mutation	SNP	G	A	A	rs149139999		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:145580038G>A	uc003ijs.1	+	3	1224	c.569G>A	c.(568-570)GGA>GAA	p.G190E	HHIP_uc003ijr.1_Missense_Mutation_p.G190E	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	190						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CAAGTCAGAGGACCAGCATCT	0.368													29	46					0	0	0.041601	0	0
NPY1R	4886	broad.mit.edu	37	4	164246548	164246548	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:164246548C>T	uc003iqm.1	-	3	1328	c.1062G>A	c.(1060-1062)ACG>ACA	p.T354T	NPY1R_uc011cjj.1_Silent_p.T111T	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	354	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CTGTGTGCATCGTGGACATGG	0.378													36	76					0	0	0.086207	0	0
ANP32C	23520	broad.mit.edu	37	4	165118846	165118846	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:165118846C>T	uc011cjk.1	-	1	18	c.18G>A	c.(16-18)CGG>CGA	p.R6R	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	6											0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		CTGAATGAATCCGTCTGCCCA	0.552													35	59					0	0	0.059317	0	0
KLHL2	11275	broad.mit.edu	37	4	166226792	166226792	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:166226792G>A	uc003irb.2	+	9	1213	c.954G>A	c.(952-954)AAG>AAA	p.K318K	KLHL2_uc011cjm.1_Silent_p.K322K|KLHL2_uc003irc.2_Silent_p.K230K|KLHL2_uc010ira.2_Intron	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	318	Kelch 1.				intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		AAGCACCAAAGGCTATCCGGA	0.458													42	95					0	0	0.104719	0	0
SPOCK3	50859	broad.mit.edu	37	4	167921597	167921597	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:167921597C>T	uc003iri.1	-	5	403	c.262G>A	c.(262-264)GAT>AAT	p.D88N	SPOCK3_uc011cjp.1_Missense_Mutation_p.D85N|SPOCK3_uc011cjq.1_Missense_Mutation_p.D97N|SPOCK3_uc011cjr.1_Intron|SPOCK3_uc003irj.1_Missense_Mutation_p.D85N|SPOCK3_uc011cjs.1_Missense_Mutation_p.D37N|SPOCK3_uc011cjt.1_5'UTR|SPOCK3_uc011cju.1_Intron|SPOCK3_uc011cjv.1_Intron|SPOCK3_uc003irk.3_Missense_Mutation_p.D85N|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	88					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		AAGCATGGATCCTTAGCTGGA	0.368													19	31					0	0	0.038395	0	0
DDX60L	91351	broad.mit.edu	37	4	169327157	169327157	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:169327157C>T	uc003irq.3	-	24	3378	c.3157G>A	c.(3157-3159)GAA>AAA	p.E1053K	DDX60L_uc003irr.1_Missense_Mutation_p.E1053K|DDX60L_uc003irs.1_Missense_Mutation_p.E748K	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1053							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		AAGTTTTCTTCATATTTTCTA	0.303													7	15					0	0	0.029380	0	0
SH3RF1	57630	broad.mit.edu	37	4	170051274	170051274	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr4:170051274G>A	uc003isa.1	-	6	1437	c.1102C>T	c.(1102-1104)CCG>TCG	p.P368S	SH3RF1_uc010irc.1_Missense_Mutation_p.P90L	NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	368						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		CTTGGGGGCGGGGTCACAATT	0.438													6	22					0	0	0.029380	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	173182	173182	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:173182G>A	uc003jak.2	+	15	3203	c.3153G>A	c.(3151-3153)AAG>AAA	p.K1051K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	1051	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		AGTCCTTCAAGGTAGCACCCG	0.597													14	29					0	0	0.038395	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	182343	182343	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:182343G>A	uc003jak.2	+	18	3771	c.3721G>A	c.(3721-3723)GAA>AAA	p.E1241K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	1241					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CTGCGTCGAGGAAGATGAGCC	0.657													13	29					0	0	0.028581	0	0
AHRR	57491	broad.mit.edu	37	5	427994	427994	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:427994C>T	uc003jav.2	+	9	891	c.847C>T	c.(847-849)CCG>TCG	p.P283S	AHRR_uc003jaw.2_Missense_Mutation_p.P261S|AHRR_uc010isy.2_Missense_Mutation_p.P111S|AHRR_uc010isz.2_Missense_Mutation_p.P261S|AHRR_uc003jax.2_Missense_Mutation_p.P24S|AHRR_uc003jay.2_Missense_Mutation_p.P121S	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	265					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			AGCCATGCTCCCGCCGCGGCT	0.562													10	22					0	0	0.105934	0	0
FLJ33360	401172	broad.mit.edu	37	5	6312573	6312573	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:6312573G>A	uc003jdn.1	-	2	400	c.303C>T	c.(301-303)ATC>ATT	p.I101I		NM_001001702	NP_001001702			SubName: Full=FLJ33360 protein; SubName: Full=cDNA FLJ33360 fis, clone BRACE2005253;												0						CTGAGCGGCCGATCCATCTTG	0.587													10	5					0	0	0.069234	0	0
SRD5A1	6715	broad.mit.edu	37	5	6633927	6633927	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:6633927C>T	uc003jdw.2	+	1	428	c.238C>T	c.(238-240)CGC>TGC	p.R80C	NSUN2_uc003jdu.2_5'Flank|NSUN2_uc011cmk.1_5'Flank|NSUN2_uc003jdv.2_5'Flank|SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Silent_p.S88S	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	80					androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	CCCGCGTCTCCGCAGCGCGCC	0.741													11	28					0	0	0.080935	0	0
SEMA5A	9037	broad.mit.edu	37	5	9063201	9063201	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:9063201G>A	uc003jek.2	-	18	3028	c.2316C>T	c.(2314-2316)TTC>TTT	p.F772F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	772	Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CAGCACGCAGGAAATCCCCAG	0.542													5	9					0	0	0.021553	0	0
CTNND2	1501	broad.mit.edu	37	5	10973601	10973601	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:10973601C>T	uc003jfa.1	-	22	3787	c.3642G>A	c.(3640-3642)ACG>ACA	p.T1214T	CTNND2_uc010itt.2_Silent_p.T1123T|CTNND2_uc011cmy.1_Silent_p.T877T|CTNND2_uc011cmz.1_Silent_p.T781T|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.T806T	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1214					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGTAGTGGCTCGTTTCATAGT	0.577													17	35					0	0	0.049695	0	0
DNAH5	1767	broad.mit.edu	37	5	13735983	13735983	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:13735983C>T	uc003jfd.2	-	67	11556	c.11514G>A	c.(11512-11514)GAG>GAA	p.E3838E	DNAH5_uc003jfc.2_Silent_p.E6E	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3838					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTGATACATCTCATTAACCA	0.498									Kartagener_syndrome				25	55					0	0	0.108266	0	0
DNAH5	1767	broad.mit.edu	37	5	13753350	13753350	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:13753350C>T	uc003jfd.2	-	63	10906	c.10864G>A	c.(10864-10866)GAA>AAA	p.E3622K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3622	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCTGGAGTTCATTTCGGCTT	0.333									Kartagener_syndrome				4	27					0	0	0.009096	0	0
DNAH5	1767	broad.mit.edu	37	5	13841080	13841080	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:13841080C>T	uc003jfd.2	-	34	5686	c.5644G>A	c.(5644-5646)GAA>AAA	p.E1882K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1882	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCACTCGTTCCGTGGAACTC	0.398									Kartagener_syndrome				22	42					0	0	0.083992	0	0
DNAH5	1767	broad.mit.edu	37	5	13864545	13864545	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:13864545G>A	uc003jfd.2	-	28	4599	c.4557C>T	c.(4555-4557)ATC>ATT	p.I1519I		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1519	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTGCCTCCATGATATTTCTTA	0.428									Kartagener_syndrome				16	47					0	0	0.024245	0	0
RNASEN	29102	broad.mit.edu	37	5	31422943	31422943	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:31422943G>A	uc003jhg.2	-	28	3729	c.3370C>T	c.(3370-3372)CTG>TTG	p.L1124L	RNASEN_uc003jhh.2_Silent_p.L1087L|RNASEN_uc003jhi.2_Silent_p.L1087L	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	1124	Necessary for interaction with DGCR8 and pri-miRNA processing activity.|RNase III 2.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						GCCCTTGCCAGAAGTCGAACA	0.393													11	30					0	0	0.069234	0	0
MTMR12	54545	broad.mit.edu	37	5	32312901	32312901	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:32312901G>A	uc003jhq.2	-	1	214	c.44C>T	c.(43-45)GCC>GTC	p.A15V	MTMR12_uc010iuk.2_Missense_Mutation_p.A15V|MTMR12_uc010iul.2_Missense_Mutation_p.A15V	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	15						cytoplasm	phosphatase activity			ovary(1)	1						GGGCTTGGGGGCCTTGGTGCC	0.507													18	43					0	0	0.069288	0	0
Unknown	0	broad.mit.edu	37	5	33162443	33162443	+	RNA	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:33162443G>A	uc003jhx.2	+	1		c.178G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GAAGTAACAAGAAATACCGTG	0.532													4	17					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	5	33162917	33162917	+	RNA	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:33162917C>T	uc003jhx.2	+	1		c.652C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		CAAATAAATCCTTGTTTTGTC	0.383													5	7					0	0	0.014758	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33881544	33881544	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:33881544G>A	uc003jia.1	-	2	332	c.169C>T	c.(169-171)CCA>TCA	p.P57S	ADAMTS12_uc010iuq.1_Missense_Mutation_p.P57S|ADAMTS12_uc003jib.1_Missense_Mutation_p.P57S	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	57					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ACTCGGACTGGACCCACCACG	0.488										HNSCC(64;0.19)			48	96					0	0	0.048971	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049231	36049231	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:36049231C>T	uc003jjz.1	-	4	696	c.603G>A	c.(601-603)GTG>GTA	p.V201V	UGT3A2_uc011cos.1_Silent_p.V167V|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	201	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAAAATTCTTCACTCGGCCCC	0.458													21	37					0	0	0.069288	0	0
TNPO1	3842	broad.mit.edu	37	5	72189461	72189461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:72189461C>T	uc003kck.3	+	18	2221	c.2074C>T	c.(2074-2076)CGA>TGA	p.R692*	TNPO1_uc011csj.1_Nonsense_Mutation_p.R642*|TNPO1_uc003kch.2_Nonsense_Mutation_p.R684*|TNPO1_uc003kci.3_Nonsense_Mutation_p.R684*|TNPO1_uc003kcg.3_Nonsense_Mutation_p.R684*	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	692	HEAT 8.				interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		GCCAGAAGTTCGACAGAGTTC	0.378													39	56					0	0	0.045515	0	0
RGNEF	64283	broad.mit.edu	37	5	73205660	73205660	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:73205660G>A	uc011csq.1	+	33	4596	c.4585G>A	c.(4585-4587)GGC>AGC	p.G1529S	RGNEF_uc003kcx.2_Missense_Mutation_p.G1529S|RGNEF_uc010izf.2_Missense_Mutation_p.G1529S|RGNEF_uc011csr.1_Missense_Mutation_p.G1216S|RGNEF_uc003kcz.3_Missense_Mutation_p.G493S|RGNEF_uc003kda.3_Missense_Mutation_p.G449S	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	1529	Interaction with microtubules (By similarity).				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GAGCCTGCTGGGCCACTGGAA	0.701													4	7					0	0	0.014758	0	0
GPR98	84059	broad.mit.edu	37	5	89925345	89925345	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:89925345T>G	uc003kju.2	+	9	1924	c.1828T>G	c.(1828-1830)TTT>GTT	p.F610V	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	610	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		tggagctcactttctagtaca	0.214													20	38					0	0	0.062417	0	0
ANKRD32	84250	broad.mit.edu	37	5	94030832	94030832	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:94030832G>A	uc003kkr.3	+	21	3072	c.2992G>A	c.(2992-2994)GAA>AAA	p.E998K	ANKRD32_uc003kks.2_Missense_Mutation_p.E362K	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	998										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		AAGTCATAAAGAAACCACCAG	0.343													7	28					0	0	0.047766	0	0
ACSL6	23305	broad.mit.edu	37	5	131305833	131305833	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:131305833C>T	uc010jdo.1	-	15	1503	c.1420G>A	c.(1420-1422)GAC>AAC	p.D474N	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.D499N|ACSL6_uc003kvy.1_Missense_Mutation_p.D499N|ACSL6_uc003kwb.2_Missense_Mutation_p.D464N|ACSL6_uc003kvz.1_Missense_Mutation_p.D399N|ACSL6_uc003kwa.1_Missense_Mutation_p.D485N|ACSL6_uc003kvw.1_Missense_Mutation_p.D120N|ACSL6_uc010jdn.1_Missense_Mutation_p.D489N	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	474	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GAGGTCCAGTCGCCAGGAGTG	0.498													36	49					0	0	0.045515	0	0
KDM3B	51780	broad.mit.edu	37	5	137727228	137727228	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:137727228C>T	uc003lcy.1	+	8	2107	c.1907C>T	c.(1906-1908)CCT>CTT	p.P636L	KDM3B_uc010jew.1_Missense_Mutation_p.P292L|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	636					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						CCTTCTAATCCTTTCCTGGCA	0.493													13	60					0	0	0.024245	0	0
SIL1	64374	broad.mit.edu	37	5	138456734	138456734	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:138456734G>A	uc003ldm.2	-	2	251	c.234C>T	c.(232-234)GCC>GCT	p.A78A	SIL1_uc003ldn.2_Silent_p.A77A|SIL1_uc003ldo.2_Silent_p.A78A|SIL1_uc003ldp.2_Silent_p.A78A	NM_022464	NP_071909	Q9H173	SIL1_HUMAN	SIL1 protein precursor	78	Interaction with HSPA5 and localization to the endoplasmic reticulum (By similarity).				intracellular protein transport|protein folding|transmembrane transport	endoplasmic reticulum lumen	unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CTGGCTGAAGGGCCTGCCACT	0.552									Marinesco-Sj_gren_syndrome				41	33					0	0	0.048971	0	0
DNAJC18	202052	broad.mit.edu	37	5	138764372	138764372	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:138764372C>T	uc003len.2	-	3	233	c.228G>A	c.(226-228)AGG>AGA	p.R76R	DNAJC18_uc010jff.2_Silent_p.R76R	NM_152686	NP_689899	Q9H819	DJC18_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 18	76					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			ovary(1)|kidney(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ATTTCTTGATCCTAAAAAAAA	0.373													29	21					0	0	0.041601	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139876129	139876130	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:139876129_139876130CC>TT	uc003lfs.1	+	15	2394_2395	c.2270_2271CC>TT	c.(2269-2271)TCC>TTT	p.S757F	ANKHD1_uc003lfq.1_Missense_Mutation_p.S776F|ANKHD1_uc003lfr.2_Missense_Mutation_p.S757F|ANKHD1_uc003lft.1_Intron|ANKHD1_uc003lfu.1_Missense_Mutation_p.S237F|ANKHD1_uc003lfv.1_Intron	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	757						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTCCAGTTCCCTCCAGGTAG	0.386													24	25					0	0	0.004672	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174819	140174819	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140174819C>T	uc003lhd.2	+	1	376	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.I90I|PCDHA2_uc011czy.1_Silent_p.I90I	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	90	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGGGAGG	0.587													19	113					0	0	0.049695	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188116	140188116	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140188116G>A	uc003lhi.2	+	1	1445	c.1344G>A	c.(1342-1344)GTG>GTA	p.V448V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.V448V|PCDHA4_uc011daa.1_Silent_p.V448V	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	448	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCTGATGTGAACGACAACG	0.642													5	52					0	0	0.014758	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222709	140222709	+	Silent	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140222709G>T	uc003lhs.2	+	1	1803	c.1803G>T	c.(1801-1803)TCG>TCT	p.S601S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.S601S	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	601	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCCGACTCGGGCTACAACG	0.687													8	39					7.48243e-07	7.55579e-07	0.058154	1	0
PCDHA11	56138	broad.mit.edu	37	5	140249718	140249718	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140249718G>A	uc003lia.2	+	1	1888	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.D344N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	344	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACACCAACGATAACTCTCC	0.512													11	33					0	0	0.069234	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262444	140262444	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140262444G>A	uc003lif.2	+	1	591	c.591G>A	c.(589-591)AGG>AGA	p.R197R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.R197R|PCDHA13_uc003lid.2_Silent_p.R197R	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	197	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTACTGAGGAAAACACTGG	0.443													19	20					0	0	0.043863	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347907	140347907	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140347907C>T	uc003lii.2	+	1	1796	c.1556C>T	c.(1555-1557)ACC>ATC	p.T519I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.T519I	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	519	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCCAGTCACCTCCTATGTC	0.507													36	18					0	0	0.098360	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348598	140348598	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140348598G>A	uc003lii.2	+	1	2487	c.2247G>A	c.(2245-2247)AGG>AGA	p.R749R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.R749R	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGAGTAAGGGAAAGGTCCC	0.458													7	42					0	0	0.029380	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389344	140389344	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140389344G>A	uc003lii.2	+	4	3086	c.2846G>A	c.(2845-2847)GGA>GAA	p.G949E	PCDHA1_uc003lha.2_Missense_Mutation_p.G628E|PCDHA1_uc003lhb.2_Missense_Mutation_p.G892E|PCDHA2_uc003lhd.2_Missense_Mutation_p.G890E|PCDHA3_uc003lhf.2_Missense_Mutation_p.G892E|PCDHA4_uc003lhi.2_Missense_Mutation_p.G889E|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Missense_Mutation_p.G878E|PCDHA6_uc003lhn.2_Missense_Mutation_p.G628E|PCDHA6_uc003lho.2_Missense_Mutation_p.G892E|PCDHA7_uc003lhq.2_Missense_Mutation_p.G879E|PCDHA8_uc003lhs.2_Missense_Mutation_p.G892E|PCDHA9_uc003lhu.2_Missense_Mutation_p.G892E|PCDHA10_uc003lhw.2_Missense_Mutation_p.G627E|PCDHA10_uc003lhx.2_Missense_Mutation_p.G890E|PCDHA11_uc003lia.2_Missense_Mutation_p.G891E|PCDHA12_uc003lic.2_Missense_Mutation_p.G883E|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Missense_Mutation_p.G892E|PCDHAC1_uc003lih.2_Missense_Mutation_p.G905E	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	949	PXXP 4.|Cytoplasmic (Potential).|4 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTATCCCAGGATCTCCTGCA	0.453													16	20					0	0	0.028581	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431589	140431589	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140431589C>T	uc003lik.1	+	1	611	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	178	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATGGGTATTTCCACCTGCACA	0.567													25	17					0	0	0.037714	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480269	140480269	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140480269G>A	uc003lio.2	+	1	36	c.36G>A	c.(34-36)AGG>AGA	p.R12R	uc003lin.2_RNA	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	12					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAGACAAAGGCAAGTCTTGC	0.507													19	19					0	0	0.055883	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516390	140516390	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140516390C>T	uc003liq.2	+	1	1591	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	458	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGAGAGA	0.617													60	57					0	0	0.048971	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531347	140531347	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140531347C>T	uc003lir.2	+	1	1509	c.1509C>T	c.(1507-1509)TCC>TCT	p.S503S	PCDHB6_uc011dah.1_Silent_p.S367S	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	503	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTGGTCTCCATCAACGCGG	0.667													47	42					0	0	0.048971	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558286	140558286	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140558286C>T	uc011dai.1	+	1	857	c.671C>T	c.(670-672)TCT>TTT	p.S224F	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	224	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGCCCAGATCTGGCACTGCT	0.517													12	163					0	0	0.105934	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558546	140558546	+	Missense_Mutation	SNP	G	A	A	rs148140727		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140558546G>A	uc011dai.1	+	1	1117	c.931G>A	c.(931-933)GAA>AAA	p.E311K	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	311	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.E311K(2)		skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTTGATTTCGAAAAATTTCA	0.383													33	112					0	0	0.050027	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564140	140564140	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140564140C>T	uc003liv.2	+	1	3161	c.2006C>T	c.(2005-2007)CCC>CTC	p.P669L	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	669	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTCCCAGCCCTTCCTGCCG	0.692													27	28					0	0	0.034045	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580900	140580900	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140580900C>T	uc003liy.2	+	1	1553	c.1553C>T	c.(1552-1554)TCG>TTG	p.S518L	PCDHB11_uc011daj.1_Missense_Mutation_p.S153L	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	518	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCTCAGGTCGCTGGACTAC	0.677													16	79					0	0	0.024245	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605035	140605035	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140605035C>T	uc003ljb.2	+	1	1958	c.1958C>T	c.(1957-1959)TCG>TTG	p.S653L	PCDHB14_uc011dal.1_Missense_Mutation_p.S500L	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	653	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTCCTCGCTCGGCCACCGCC	0.721													10	56					0	0	0.093190	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731312	140731312	+	Silent	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140731312G>T	uc003ljo.1	+	1	1485	c.1485G>T	c.(1483-1485)CGG>CGT	p.R495R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.R495R	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	495	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGCCGCGGGAGCTGTTGT	0.652													8	28					0.00448238	0.00450425	0.047766	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140731925	140731925	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140731925C>T	uc003ljo.1	+	1	2098	c.2098C>T	c.(2098-2100)CTC>TTC	p.L700F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.L700F|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	700	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGCTCTTTCTCCTCGCGGT	0.607													68	67					0	0	0.048971	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744239	140744239	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140744239G>A	uc003lju.1	+	1	342	c.342G>A	c.(340-342)ATG>ATA	p.M114I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.M114I	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	114	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAACAAAATGAAAATTTATG	0.448													14	13					0	0	0.105934	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745897	140745897	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140745897G>A	uc003lju.1	+	1	2000	c.2000G>A	c.(1999-2001)AGG>AAG	p.R667K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.R667K	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	667	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGCCGACAGGATCCCTGAC	0.612													27	167					0	0	0.108266	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764612	140764612	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:140764612C>T	uc003lka.1	+	1	2146	c.2146C>T	c.(2146-2148)CTG>TTG	p.L716L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGB4_uc003lkc.1_5'Flank|PCDHGA7_uc003ljz.1_Silent_p.L716L|PCDHGB4_uc011dav.1_5'Flank	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	716	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGCTCAGGCTGCGGCGCTG	0.622													9	31					0	0	0.058154	0	0
LARS	51520	broad.mit.edu	37	5	145493815	145493815	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:145493815G>A	uc003lnx.1	-	32	3623	c.3385C>T	c.(3385-3387)CCT>TCT	p.P1129S	LARS_uc003lnw.1_Missense_Mutation_p.P287S|LARS_uc011dbq.1_Missense_Mutation_p.P1083S|LARS_uc011dbr.1_Missense_Mutation_p.P1075S|LARS_uc011dbs.1_Missense_Mutation_p.P1102S	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	1129					leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	CCCAGGACAGGAACTCGTCGA	0.413													4	31					0	0	0.014758	0	0
PDGFRB	5159	broad.mit.edu	37	5	149497276	149497276	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:149497276G>A	uc003lro.2	-	22	3511	c.3042C>T	c.(3040-3042)CCC>CCT	p.P1014P	PDGFRB_uc010jhd.2_Silent_p.P853P	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1014	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CACCCTCATTGGGCTGCACGG	0.632			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								30	31					0	0	0.041601	0	0
SLC36A2	153201	broad.mit.edu	37	5	150718687	150718687	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:150718687G>A	uc003lty.2	-	5	589	c.459C>T	c.(457-459)TTC>TTT	p.F153F	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_Intron|SLC36A2_uc003lua.2_Intron|SLC36A2_uc010jhv.2_Silent_p.F153F|SLC36A2_uc011dct.1_Silent_p.F153F	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	153	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGATAATAAGGAAGAAGCTCA	0.403													31	43					0	0	0.045705	0	0
FAT2	2196	broad.mit.edu	37	5	150946321	150946321	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:150946321G>A	uc003lue.3	-	1	2185	c.2172C>T	c.(2170-2172)GTC>GTT	p.V724V	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.V724V	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	724	Extracellular (Potential).|Cadherin 6.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACTCTCAAGGACATCAATGG	0.483													59	57					0	0	0.048971	0	0
GRIA1	2890	broad.mit.edu	37	5	153029987	153029987	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:153029987G>A	uc003lva.3	+	4	923	c.558G>A	c.(556-558)CGG>CGA	p.R186R	GRIA1_uc003luy.3_Silent_p.R186R|GRIA1_uc003luz.3_Silent_p.R91R|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.R106R|GRIA1_uc011dcx.1_Silent_p.R117R|GRIA1_uc011dcy.1_Silent_p.R196R|GRIA1_uc011dcz.1_Silent_p.R196R|GRIA1_uc010jia.1_Silent_p.R166R	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	186	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGGGATACCGGATGCTCTTTC	0.517													29	33					0	0	0.037714	0	0
SGCD	6444	broad.mit.edu	37	5	156074493	156074493	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:156074493C>T	uc003lwd.3	+	6	995	c.519C>T	c.(517-519)TTC>TTT	p.F173F	SGCD_uc003lwb.2_Silent_p.F174F|SGCD_uc003lwc.3_Silent_p.F174F	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	173	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCACAGTGTTCCCTAAATCTA	0.438													87	108					0	0	0.048971	0	0
C5orf40	408263	broad.mit.edu	37	5	156770005	156770005	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:156770005C>T	uc003lwu.2	-	2	728	c.540G>A	c.(538-540)CTG>CTA	p.L180L	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	180						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCATTTCCACCAGGGGGAGCC	0.627											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	86					0	0	0.062417	0	0
NIPAL4	348938	broad.mit.edu	37	5	156899470	156899470	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:156899470G>A	uc003lwx.3	+	6	1019	c.903G>A	c.(901-903)GTG>GTA	p.V301V	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Silent_p.V282V	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	301	Helical; (Potential).					integral to membrane	receptor activity				0						CCTTCTCTGTGGCTGCTGTCA	0.557											OREG0016979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	74	65					0	0	0.048971	0	0
RNF145	153830	broad.mit.edu	37	5	158585993	158585993	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:158585993G>A	uc003lxp.2	-	11	1990	c.1677C>T	c.(1675-1677)GGC>GGT	p.G559G	RNF145_uc011ddy.1_Silent_p.G573G|RNF145_uc003lxo.1_Silent_p.G587G|RNF145_uc011ddz.1_Silent_p.G576G|RNF145_uc010jiq.1_Silent_p.G589G	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	559	RING-type; atypical.					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCTTAAGACAGCCTGCATGGA	0.453													4	24					0	0	0.009096	0	0
CCNJL	79616	broad.mit.edu	37	5	159682681	159682681	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:159682681G>A	uc003lyb.1	-	6	1014	c.762C>T	c.(760-762)GTC>GTT	p.V254V	CCNJL_uc011dee.1_Silent_p.V206V|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Silent_p.V206V	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	254						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGCCGCAGCGACCACAGAAG	0.552													7	48					0	0	0.029380	0	0
GABRB2	2561	broad.mit.edu	37	5	160758022	160758022	+	Silent	SNP	G	A	A	rs79319310		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:160758022G>A	uc003lys.1	-	9	1163	c.945C>T	c.(943-945)TTC>TTT	p.F315F	GABRB2_uc011deh.1_Silent_p.F154F|GABRB2_uc003lyr.1_Silent_p.F315F|GABRB2_uc003lyt.1_Silent_p.F315F|GABRB2_uc010jiu.1_Silent_p.F252F	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	315	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCATGAAAACGAAGACAAAGC	0.512													28	47					0	0	0.037714	0	0
WWC1	23286	broad.mit.edu	37	5	167850831	167850831	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:167850831C>T	uc003lzu.2	+	11	1661	c.1568C>T	c.(1567-1569)TCC>TTC	p.S523F	WWC1_uc003lzv.2_Missense_Mutation_p.S523F|WWC1_uc011den.1_Missense_Mutation_p.S523F|WWC1_uc003lzw.2_Missense_Mutation_p.S322F	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	523					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GCTCTGCGTTCCCTGTCTGGC	0.652													12	19					0	0	0.105934	0	0
GPRIN1	114787	broad.mit.edu	37	5	176025273	176025273	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr5:176025273G>A	uc003meo.1	-	2	1738	c.1563C>T	c.(1561-1563)CCC>CCT	p.P521P		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	521						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCGAGGACAGGGGATCTCCTT	0.652													26	34					0	0	0.099896	0	0
DUSP22	56940	broad.mit.edu	37	6	311939	311939	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:311939G>A	uc003msx.2	+	3	554	c.115G>A	c.(115-117)GAT>AAT	p.D39N	DUSP22_uc011dhn.1_Missense_Mutation_p.D39N|DUSP22_uc003msy.1_5'UTR	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	39					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GTCTGTCCACGATAGTGCCAG	0.493													10	58					0	0	0.080935	0	0
DSP	1832	broad.mit.edu	37	6	7580141	7580141	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:7580141G>A	uc003mxp.1	+	23	3997	c.3718G>A	c.(3718-3720)GAT>AAT	p.D1240N	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1240	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAACCAGCTTGATAGACTTTC	0.413													18	29					0	0	0.038395	0	0
BTN2A3	54718	broad.mit.edu	37	6	26426749	26426749	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:26426749C>T	uc011dkl.1	+	3	734	c.704C>T	c.(703-705)CCA>CTA	p.P235L	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						ATTTTTATTCCAGGTTAGTTC	0.522													26	42					0	0	0.030593	0	0
BTN1A1	696	broad.mit.edu	37	6	26506938	26506938	+	Nonsense_Mutation	SNP	G	A	A	rs144262313		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:26506938G>A	uc003nif.3	+	4	757	c.737G>A	c.(736-738)TGG>TAG	p.W246*		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	246	Helical; (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						CTGACTCCCTGGATAGTGGCT	0.463													71	133					0	0	0.048971	0	0
ABT1	29777	broad.mit.edu	37	6	26597288	26597288	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:26597288G>A	uc003nii.2	+	1	109	c.78G>A	c.(76-78)GAG>GAA	p.E26E		NM_013375	NP_037507	Q9ULW3	ABT1_HUMAN	activator of basal transcription 1	26					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleolus	DNA binding|nucleotide binding|protein binding|RNA binding|transcription coactivator activity			ovary(1)	1						TAGATGCGGAGGAGGAGCAGG	0.612													12	15					0	0	0.080935	0	0
OR12D3	81797	broad.mit.edu	37	6	29342287	29342287	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:29342287G>A	uc003nme.2	-	1	782	c.778C>T	c.(778-780)CGT>TGT	p.R260C		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						GAAGCAGGACGAATATATGTG	0.488													8	20					0	0	0.047766	0	0
PRR3	80742	broad.mit.edu	37	6	30525980	30525980	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:30525980C>T	uc003nqi.1	+	2	526	c.160C>T	c.(160-162)CCT>TCT	p.P54S	GNL1_uc011dmi.1_5'Flank|GNL1_uc011dmj.1_5'Flank|GNL1_uc011dmk.1_5'Flank|GNL1_uc003nqh.2_5'Flank|PRR3_uc003nqj.1_Intron	NM_025263	NP_079539	P79522	PRR3_HUMAN	proline-rich protein 3 isoform a	54	Pro-rich.						nucleic acid binding|zinc ion binding				0						ACCTGGCGACCCTAAGTCAGG	0.498													29	38					0	0	0.050027	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928311	31928311	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:31928311C>T	uc003nyn.1	+	5	846	c.457C>T	c.(457-459)CCC>TCC	p.P153S	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_5'UTR|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	153						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						AACTCAGTATCCCTTCTGGCC	0.542													147	271					0	0	0.048971	0	0
SKIV2L	6499	broad.mit.edu	37	6	31929110	31929110	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:31929110C>T	uc003nyn.1	+	8	1125	c.736C>T	c.(736-738)CCC>TCC	p.P246S	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.P88S|SKIV2L_uc011dov.1_Missense_Mutation_p.P53S	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	246						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TTCAGCCTCTCCCTGCAGTGC	0.582													167	271					0	0	0.048971	0	0
C4A	720	broad.mit.edu	37	6	31996608	31996608	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:31996608G>A	uc011dpd.1	+	26	3420	c.3369G>A	c.(3367-3369)GTG>GTA	p.V1123V	C4A_uc011dpe.1_Silent_p.V1123V	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	1123					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						TCTCTCCAGTGATACATAGGA	0.592													47	62					0	0	0.048971	0	0
CYP21A2	1589	broad.mit.edu	37	6	32007175	32007175	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:32007175G>A	uc003nze.1	+	4	608	c.490G>A	c.(490-492)GAA>AAA	p.E164K	CYP21A2_uc003nzf.1_Missense_Mutation_p.E134K	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	163					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						CATTGAGGAGGAATTCTCTCT	0.632													89	334					0	0	0.048971	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188644	32188644	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:32188644G>A	uc003obb.2	-	5	950	c.811C>T	c.(811-813)CCA>TCA	p.P271S	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.P271S	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	271	EGF-like 6.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TCACAGTCTGGGCCTATGAAA	0.612													79	77					0	0	0.048971	0	0
TAP2	6891	broad.mit.edu	37	6	32803453	32803454	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:32803453_32803454GG>AA	uc003occ.2	-	3	736_737	c.705_706CC>TT	c.(703-708)CGCCAG>CGTTAG	p.Q236*	TAP2_uc011dqf.1_Nonsense_Mutation_p.Q236*|TAP2_uc003ocb.1_Nonsense_Mutation_p.Q236*|TAP2_uc003ocd.2_Nonsense_Mutation_p.Q236*	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	236	Cytoplasmic (Potential).|ABC transmembrane type-1.				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						CCGAGGTCCTGGCGCAGCAGGG	0.589													21	54					0	0	0.004672	0	0
COL11A2	1302	broad.mit.edu	37	6	33156166	33156166	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:33156166G>A	uc003ocx.1	-	4	807	c.579C>T	c.(577-579)GCC>GCT	p.A193A	COL11A2_uc003ocy.1_Silent_p.A193A|COL11A2_uc003ocz.1_Silent_p.A193A|COL11A2_uc003oda.2_Silent_p.A193A	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	193	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAGAATACGGGCACCAAAGA	0.542													26	68					0	0	0.091800	0	0
FKBP5	2289	broad.mit.edu	37	6	35547853	35547853	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:35547853T>C	uc011dte.1	-	9	1189	c.986A>G	c.(985-987)AAG>AGG	p.K329R	FKBP5_uc003okx.2_Missense_Mutation_p.K329R|FKBP5_uc011dtf.1_Missense_Mutation_p.K150R|FKBP5_uc003oky.2_Missense_Mutation_p.K329R	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	329	TPR 2.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						TTCTCTAAGCTTCAGGTAGCA	0.428													34	58					0	0	0.080422	0	0
DNAH8	1769	broad.mit.edu	37	6	38885838	38885838	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:38885838G>A	uc003ooe.1	+	68	10395	c.9795G>A	c.(9793-9795)GGG>GGA	p.G3265G	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAGTCTGTGGGAATGTGGCTG	0.388													16	43					0	0	0.028581	0	0
TSPO2	222642	broad.mit.edu	37	6	41010893	41010893	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:41010893G>T	uc003opj.2	+	2	470	c.169G>T	c.(169-171)GTG>TTG	p.V57L	UNC5CL_uc010jxe.1_Intron|TSPO2_uc003opk.2_Silent_p.S66S|TSPO2_uc011dub.1_Missense_Mutation_p.V57L	NM_001010873	NP_001010873	Q5TGU0	TSPO2_HUMAN	benzodiazapine receptor (peripheral)-like 1	57	Helical; (Potential).				transport	endoplasmic reticulum membrane|integral to membrane	cholesterol binding|receptor activity				0						CTACTCTGTCGTGGGGTGAGT	0.498													29	68					2.42023e-17	2.46085e-17	0.059317	1	0
TREML3	340206	broad.mit.edu	37	6	41185457	41185457	+	RNA	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:41185457C>T	uc003oqb.2	-	1		c.229G>A				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						TTGTAGATTTCACACCAGTAG	0.448													4	1					0	0	0.021553	0	0
GPR110	266977	broad.mit.edu	37	6	46977077	46977077	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:46977077C>T	uc003oyt.2	-	11	2293	c.2094G>A	c.(2092-2094)ATG>ATA	p.M698I	GPR110_uc011dwl.1_Missense_Mutation_p.M386I	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	698	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						CAACAGCCATCATCAAATGCT	0.468													17	12					0	0	0.028581	0	0
CRISP1	167	broad.mit.edu	37	6	49803098	49803098	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:49803098C>T	uc003ozw.2	-	8	760	c.681G>A	c.(679-681)CTG>CTA	p.L227L	CRISP1_uc003ozx.2_3'UTR	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	227					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					GGTTGCATCCCAGATAATGGA	0.363													27	19					0	0	0.108266	0	0
PKHD1	5314	broad.mit.edu	37	6	51524127	51524128	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:51524127_51524128GT>AA	uc003pah.1	-	61	11072_11073	c.10796_10797AC>TT	c.(10795-10797)CAC>CTT	p.H3599L		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3599	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CAGGCATCTCGTGAATAAACCT	0.406													29	12					0	0	0.004672	0	0
PKHD1	5314	broad.mit.edu	37	6	51890235	51890235	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:51890235G>A	uc003pah.1	-	32	4649	c.4373C>T	c.(4372-4374)TCC>TTC	p.S1458F	PKHD1_uc003pai.2_Missense_Mutation_p.S1458F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1458	IPT/TIG 9.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GACGTTCAGGGAGAAGGAAGC	0.527													18	10					0	0	0.038395	0	0
PKHD1	5314	broad.mit.edu	37	6	51890237	51890237	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:51890237G>A	uc003pah.1	-	32	4647	c.4371C>T	c.(4369-4371)TTC>TTT	p.F1457F	PKHD1_uc003pai.2_Silent_p.F1457F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1457	IPT/TIG 9.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CGTTCAGGGAGAAGGAAGCTC	0.527													18	10					0	0	0.038395	0	0
ICK	22858	broad.mit.edu	37	6	52878705	52878705	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:52878705G>A	uc003pbh.2	-	10	1397	c.907C>T	c.(907-909)CCA>TCA	p.P303S	ICK_uc003pbi.2_Missense_Mutation_p.P303S	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	303					intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					CCTTTCTGTGGTTTTTCTGAA	0.498													19	10					0	0	0.055883	0	0
PRIM2	5558	broad.mit.edu	37	6	57398298	57398298	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:57398298G>A	uc003pdx.2	+	10	1088	c.1001G>A	c.(1000-1002)GGA>GAA	p.G334E		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	334					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TTTATCAAAGGAAAGATGGAT	0.343													11	87					0	0	0.028581	0	0
GJA10	84694	broad.mit.edu	37	6	90605621	90605621	+	Silent	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:90605621A>C	uc011eaa.1	+	1	1434	c.1434A>C	c.(1432-1434)ACA>ACC	p.T478T		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	478	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		GGCACAGAACATCAATGGTAA	0.493													42	18					0	0	0.042209	0	0
LIN28B	389421	broad.mit.edu	37	6	105474282	105474282	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:105474282G>C	uc003pqv.1	+	3	511	c.308G>C	c.(307-309)GGT>GCT	p.G103A	LIN28B_uc010kda.1_Missense_Mutation_p.G63A	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	103					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				ACAGGACCTGGTGGGAGCCCC	0.393													41	37					0	0	0.045515	0	0
COL10A1	1300	broad.mit.edu	37	6	116442961	116442961	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:116442961C>T	uc003pwm.2	-	3	414	c.318G>A	c.(316-318)GGG>GGA	p.G106G	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	106	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CACCTGGTTTCCCTACAGCTG	0.602													24	17					0	0	0.099896	0	0
C6orf174	387104	broad.mit.edu	37	6	127797362	127797362	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:127797362C>T	uc003qbd.2	-	6	2674	c.1809G>A	c.(1807-1809)AGG>AGA	p.R603R	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	603	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CGACGATTTTCCTGCCCAGGA	0.607													43	30					0	0	0.111260	0	0
MOXD1	26002	broad.mit.edu	37	6	132641792	132641792	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:132641792C>T	uc003qdf.2	-	9	1440	c.1341G>A	c.(1339-1341)ACG>ACA	p.T447T	MOXD1_uc003qde.2_Silent_p.T379T	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	447	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		CTCTATCTTTCGTGTTGTAGC	0.299													9	9					0	0	0.069234	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599747	136599747	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:136599747C>T	uc003qgx.1	-	4	525	c.272G>A	c.(271-273)GGT>GAT	p.G91D	BCLAF1_uc003qgw.1_Missense_Mutation_p.G91D|BCLAF1_uc003qgy.1_Missense_Mutation_p.G89D|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.G89D	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	91					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTATAACCACCTCGATGATA	0.463													28	79					0	0	0.037714	0	0
HIVEP2	3097	broad.mit.edu	37	6	143091221	143091222	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:143091221_143091222GG>AA	uc003qjd.2	-	5	5397_5398	c.4654_4655CC>TT	c.(4654-4656)CCG>TTG	p.P1552L		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1552	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CTTCTGCCCCGGAAGTGGTGCC	0.54													22	10					0	0	0.004672	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151161517	151161517	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:151161517A>G	uc003qny.1	+	17	3955	c.3643A>G	c.(3643-3645)AGG>GGG	p.R1215G	PLEKHG1_uc011eem.1_Missense_Mutation_p.R1274G	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	1215					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		CAGAAGTTCAAGGTGTGAGAG	0.468													33	19					0	0	0.064281	0	0
IPCEF1	26034	broad.mit.edu	37	6	154587079	154587079	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:154587079C>T	uc003qpx.2	-	3	159	c.3G>A	c.(1-3)ATG>ATA	p.M1I	IPCEF1_uc003qpw.2_Missense_Mutation_p.M1I|IPCEF1_uc010kjh.2_Missense_Mutation_p.M1I	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	1					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						TGTATGATGTCATCTTAGTAG	0.333													50	22					0	0	0.048971	0	0
SLC22A1	6580	broad.mit.edu	37	6	160579578	160579578	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:160579578C>T	uc003qtc.2	+	11	1734	c.1629C>T	c.(1627-1629)TAC>TAT	p.Y543Y	SLC22A1_uc003qtd.2_Missense_Mutation_p.P506S	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	543	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		ACACGATTTACCTTAAGGTCC	0.393													21	17					0	0	0.083992	0	0
CCR6	1235	broad.mit.edu	37	6	167549877	167549877	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr6:167549877C>T	uc003qvl.2	+	13	2635	c.159C>T	c.(157-159)TAC>TAT	p.Y53Y	CCR6_uc010kkm.2_Silent_p.Y53Y|CCR6_uc003qvn.3_Silent_p.Y53Y|CCR6_uc003qvm.3_Silent_p.Y53Y	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	53	Helical; Name=1; (Potential).				cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		CGATTGCCTACTCCTTGATCT	0.448													52	21					0	0	0.048971	0	0
COL28A1	340267	broad.mit.edu	37	7	7491972	7491972	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:7491972C>T	uc003src.1	-	18	1604	c.1487G>A	c.(1486-1488)GGA>GAA	p.G496E	COL28A1_uc011jxe.1_Missense_Mutation_p.G179E|COL28A1_uc003srd.2_Missense_Mutation_p.G51E	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	496					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TACTCCAATTCCCACTGGTCC	0.398													22	71					0	0	0.099896	0	0
NXPH1	30010	broad.mit.edu	37	7	8791266	8791266	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:8791266C>T	uc003srv.2	+	3	1594	c.683C>T	c.(682-684)TCC>TTC	p.S228F	NXPH1_uc011jxh.1_Missense_Mutation_p.S111F	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	228	V (Cys-rich).					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		AGTCATGTATCCTGGCTCTGC	0.413													20	22					0	0	0.062417	0	0
ABCB5	340273	broad.mit.edu	37	7	20739546	20739546	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:20739546C>T	uc003suw.3	+	9	1464	c.918C>T	c.(916-918)TTC>TTT	p.F306F	ABCB5_uc010kuh.2_Silent_p.F751F	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	306	Helical; (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TCAGTTATTTCATGCAGGTAA	0.294													25	16					0	0	0.083992	0	0
DNAH11	8701	broad.mit.edu	37	7	21747425	21747425	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:21747425C>T	uc003svc.2	+	41	6707	c.6676C>T	c.(6676-6678)CAT>TAT	p.H2226Y		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2226	AAA 2 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTTCATACATCATGCTACCCG	0.383									Kartagener_syndrome				9	39					0	0	0.058154	0	0
CCDC129	223075	broad.mit.edu	37	7	31622797	31622797	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:31622797G>A	uc003tcj.1	+	9	2213	c.1220G>A	c.(1219-1221)GGA>GAA	p.G407E	CCDC129_uc011kad.1_Missense_Mutation_p.G417E|CCDC129_uc003tci.1_Missense_Mutation_p.G258E|CCDC129_uc011kae.1_Missense_Mutation_p.G433E|CCDC129_uc003tck.1_Missense_Mutation_p.G315E	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	407											0						ATGACTTCAGGAACTGTAGGT	0.318													36	161					0	0	0.042209	0	0
PDE1C	5137	broad.mit.edu	37	7	31855568	31855568	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:31855568C>T	uc003tcm.1	-	15	2252	c.1783G>A	c.(1783-1785)GAG>AAG	p.E595K	PDE1C_uc003tcn.1_Missense_Mutation_p.E595K|PDE1C_uc003tco.1_Missense_Mutation_p.E655K|PDE1C_uc003tcr.2_Missense_Mutation_p.E595K|PDE1C_uc003tcs.2_Missense_Mutation_p.E595K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	595					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GATGACTTCTCGGCTTTGGAG	0.443													150	119					0	0	0.048971	0	0
PDE1C	5137	broad.mit.edu	37	7	32209506	32209506	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:32209506C>T	uc003tco.1	-	3	793	c.199G>A	c.(199-201)GAG>AAG	p.E67K		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	Error:Variant_position_missing_in_Q14123_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTTGGCTTCTCCTTGACATTC	0.517													46	132					0	0	0.048971	0	0
NPSR1	387129	broad.mit.edu	37	7	34851472	34851472	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:34851472G>A	uc003teg.1	+	4	603	c.475G>A	c.(475-477)GGA>AGA	p.G159R	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.G159R|NPSR1_uc010kwt.1_Missense_Mutation_p.G6R|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Missense_Mutation_p.G159R|NPSR1_uc010kww.1_Missense_Mutation_p.G148R|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	159	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GTTCCTTCAAGGAGGTGAGCT	0.443													31	103					0	0	0.045705	0	0
NPSR1	387129	broad.mit.edu	37	7	34884512	34884512	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:34884512G>A	uc003teg.1	+	7	890	c.762G>A	c.(760-762)GGG>GGA	p.G254G	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.G254G|NPSR1_uc010kwt.1_Silent_p.G101G|NPSR1_uc010kwu.1_Silent_p.G44G|NPSR1_uc010kwv.1_Silent_p.G188G|NPSR1_uc003tei.1_Silent_p.G254G|NPSR1_uc010kww.1_Silent_p.G243G|NPSR1_uc011kar.1_Silent_p.G188G	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	254	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CTACAGATGGGAAACTGTGCA	0.403													38	37					0	0	0.104719	0	0
EEPD1	80820	broad.mit.edu	37	7	36194646	36194646	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:36194646C>T	uc003tfa.2	+	2	1353	c.713C>T	c.(712-714)CCC>CTC	p.P238L		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	238					DNA repair		DNA binding				0						CCAGGGGGGCCCACCCAGATT	0.662													13	50					0	0	0.024245	0	0
POU6F2	11281	broad.mit.edu	37	7	39125506	39125506	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:39125506G>A	uc003thb.1	+	2	107	c.65G>A	c.(64-66)CGG>CAG	p.R22Q	POU6F2_uc010kxo.2_Missense_Mutation_p.R14Q	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	22					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CTGTCAGTGCGGAGTGAAATG	0.502													25	17					0	0	0.037714	0	0
INHBA	3624	broad.mit.edu	37	7	41729272	41729272	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:41729272G>A	uc003thq.2	-	2	1492	c.1257C>T	c.(1255-1257)ATC>ATT	p.I419I	INHBA_uc003thr.2_Silent_p.I419I	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	419					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ACTCCTCCACGATCATGTTCT	0.468										TSP Lung(11;0.080)			47	44					0	0	0.048971	0	0
PKD1L1	168507	broad.mit.edu	37	7	47947754	47947754	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:47947754G>A	uc003tny.1	-	9	1322	c.1322C>T	c.(1321-1323)GCC>GTC	p.A441V		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	441	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CGCAGACACGGCCTCATGGCC	0.453													30	28					0	0	0.030593	0	0
TYW1B	441250	broad.mit.edu	37	7	72286026	72286026	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:72286026G>A	uc011kej.1	-	3	329	c.170C>T	c.(169-171)TCC>TTC	p.S57F	TYW1B_uc011keh.1_Missense_Mutation_p.S57F|TYW1B_uc011kek.1_RNA	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	57	Flavodoxin-like.				tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						CAGATCCAGGGACGTAACTGC	0.368													32	32					0	0	0.054565	0	0
PTPN12	5782	broad.mit.edu	37	7	77212886	77212886	+	Silent	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:77212886A>C	uc003ugh.2	+	4	391	c.300A>C	c.(298-300)CCA>CCC	p.P100P	PTPN12_uc011kgp.1_5'UTR|PTPN12_uc011kgq.1_Intron|PTPN12_uc010ldq.1_RNA|PTPN12_uc010ldr.1_Intron	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	100	Tyrosine-protein phosphatase.					soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						TCTATGGGCCAAAAGCATATG	0.299													25	17					0	0	0.091800	0	0
PCLO	27445	broad.mit.edu	37	7	82453632	82453632	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:82453632G>A	uc003uhx.2	-	19	14805	c.14516C>T	c.(14515-14517)TCC>TTC	p.S4839F	PCLO_uc003uhv.2_Missense_Mutation_p.S4839F|PCLO_uc003uht.1_Missense_Mutation_p.S281F|PCLO_uc003uhu.1_Missense_Mutation_p.S260F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4701	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTCTGACTGGAATGAGACTT	0.428													33	23					0	0	0.050027	0	0
PCLO	27445	broad.mit.edu	37	7	82584171	82584171	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:82584171G>A	uc003uhx.2	-	5	6387	c.6098C>T	c.(6097-6099)TCT>TTT	p.S2033F	PCLO_uc003uhv.2_Missense_Mutation_p.S2033F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1964					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATGATAAAAGAGCTTGAAAC	0.388													43	37					0	0	0.092188	0	0
ABCB4	5244	broad.mit.edu	37	7	87041264	87041264	+	Nonsense_Mutation	SNP	G	A	A	rs121918440		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:87041264G>A	uc003uiv.1	-	23	2945	c.2869C>T	c.(2869-2871)CGA>TGA	p.R957*	ABCB4_uc003uiw.1_Nonsense_Mutation_p.R957*|ABCB4_uc003uix.1_Intron	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	957	Extracellular (By similarity).|ABC transmembrane type-1 2.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GCACCAAATCGAAAACAACCG	0.328													24	13					0	0	0.091800	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87407231	87407231	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:87407231G>A	uc003ujb.2	+	9	1378	c.967G>A	c.(967-969)GAA>AAA	p.E323K	RUNDC3B_uc011khd.1_Missense_Mutation_p.E306K|RUNDC3B_uc011khe.1_Missense_Mutation_p.E306K|RUNDC3B_uc003ujc.2_Missense_Mutation_p.E306K|RUNDC3B_uc003ujd.2_Missense_Mutation_p.E228K	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	323	Potential.									skin(1)	1	Esophageal squamous(14;0.00164)					ACTGGAGAAGGAACAATTAGA	0.358													12	54					0	0	0.024245	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764785	92764785	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:92764785G>T	uc003umh.1	-	5	1716	c.500C>A	c.(499-501)CCT>CAT	p.P167H	SAMD9L_uc003umj.1_Missense_Mutation_p.P167H|SAMD9L_uc003umi.1_Missense_Mutation_p.P167H|SAMD9L_uc010lfb.1_Missense_Mutation_p.P167H|SAMD9L_uc003umk.1_Missense_Mutation_p.P167H|SAMD9L_uc010lfc.1_Missense_Mutation_p.P167H|SAMD9L_uc010lfd.1_Missense_Mutation_p.P167H|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	167										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGATCAAAAGGATATGGCAT	0.353													91	58					5.84261e-33	5.95831e-33	0.048971	1	0
TMEM130	222865	broad.mit.edu	37	7	98457810	98457810	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:98457810G>A	uc003upo.2	-	3	732	c.543C>T	c.(541-543)TTC>TTT	p.F181F	TMEM130_uc011kiq.1_Silent_p.F162F|TMEM130_uc011kir.1_Silent_p.F181F|TMEM130_uc003upn.2_Silent_p.F79F	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	181	Extracellular (Potential).|PKD.					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCCGTCCCCGAAGTCCCAGC	0.582													25	23					0	0	0.091800	0	0
TRRAP	8295	broad.mit.edu	37	7	98567828	98567828	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:98567828G>A	uc003upp.2	+	51	7794	c.7585G>A	c.(7585-7587)GAT>AAT	p.D2529N	TRRAP_uc011kis.1_Missense_Mutation_p.D2511N|TRRAP_uc003upr.2_Missense_Mutation_p.D2228N	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2529					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CAACCTGGCCGATAGCCACGA	0.627													28	88					0	0	0.041601	0	0
TRRAP	8295	broad.mit.edu	37	7	98609786	98609786	+	Silent	SNP	C	T	T	rs149548740		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:98609786C>T	uc003upp.2	+	72	11597	c.11388C>T	c.(11386-11388)GCC>GCT	p.A3796A	TRRAP_uc011kis.1_Silent_p.A3767A|TRRAP_uc003upr.2_Silent_p.A3502A|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3796	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCTCGGCCGCCGGGCAGCCAG	0.577													29	26					0	0	0.037714	0	0
MUC17	140453	broad.mit.edu	37	7	100684337	100684337	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:100684337A>G	uc003uxp.1	+	3	9693	c.9640A>G	c.(9640-9642)ACC>GCC	p.T3214A	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3214	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|52.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGCATTCCAACCTCAACTCC	0.498													220	169					0	0	0.048971	0	0
TRIM56	81844	broad.mit.edu	37	7	100731662	100731662	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:100731662G>A	uc003uxq.2	+	3	1300	c.1069G>A	c.(1069-1071)GGG>AGG	p.G357R	TRIM56_uc003uxr.2_Intron	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	357					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					GCTCCATCCTGGGCTCCTGGA	0.667													8	26					0	0	0.058154	0	0
CUX1	1523	broad.mit.edu	37	7	101847763	101847763	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:101847763C>T	uc003uyx.3	+	19	3038	c.3000C>T	c.(2998-3000)ATC>ATT	p.I1000I	CUX1_uc003uys.3_Silent_p.I1011I|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1000	CUT 2.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						AACCCTTCATCCGGATGCAGC	0.647													34	115					0	0	0.080422	0	0
CUX1	1523	broad.mit.edu	37	7	101870745	101870745	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:101870745C>T	uc003uyx.3	+	21	3267	c.3229C>T	c.(3229-3231)CCC>TCC	p.P1077S	CUX1_uc003uys.3_Missense_Mutation_p.P1088S|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1077					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GGTCCAGCAGCCCTGTCCCCC	0.657													24	107					0	0	0.076483	0	0
ALKBH4	54784	broad.mit.edu	37	7	102097854	102097854	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:102097854C>T	uc003uzl.2	-	3	901	c.896G>A	c.(895-897)GGA>GAA	p.G299E	ALKBH4_uc003uzm.2_Missense_Mutation_p.G226E	NM_017621	NP_060091	Q9NXW9	ALKB4_HUMAN	alkB, alkylation repair homolog 4	299						cytoplasm|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CACGGGTCTTCCCTGGAAGGA	0.607													66	27					0	0	0.048971	0	0
LRRC17	10234	broad.mit.edu	37	7	102574540	102574540	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:102574540C>T	uc003vau.2	+	2	569	c.180C>T	c.(178-180)CTC>CTT	p.L60L	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Silent_p.L60L	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	60					bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						ACACATATCTCCATGAGAAAT	0.522													34	28					0	0	0.054565	0	0
RELN	5649	broad.mit.edu	37	7	103216072	103216072	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:103216072G>A	uc003vca.2	-	29	4386	c.4226C>T	c.(4225-4227)TCC>TTC	p.S1409F	RELN_uc010liz.2_Missense_Mutation_p.S1409F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1409	EGF-like 3.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACAAGGCTCGGATATGTACAC	0.478													16	62					0	0	0.024245	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509723	106509723	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:106509723G>A	uc003vdv.3	+	2	1802	c.1717G>A	c.(1717-1719)GAA>AAA	p.E573K	PIK3CG_uc003vdu.2_Missense_Mutation_p.E573K|PIK3CG_uc003vdw.2_Missense_Mutation_p.E573K	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	573					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AGAGGACAAAGAATTGCTCTG	0.473													15	47					0	0	0.020292	0	0
HYAL4	23553	broad.mit.edu	37	7	123517118	123517118	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:123517118C>T	uc003vlc.2	+	5	1993	c.1355C>T	c.(1354-1356)GCT>GTT	p.A452V	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	452	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						ATAAAGACGGCTGATGGCTGC	0.433													28	112					0	0	0.108266	0	0
GRM8	2918	broad.mit.edu	37	7	126544666	126544666	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:126544666T>G	uc003vlr.2	-	3	1110	c.799A>C	c.(799-801)AAA>CAA	p.K267Q	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.K267Q|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_5'UTR	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	267	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGCAGGCGTTTGATAATTTTT	0.408										HNSCC(24;0.065)			15	64					0	0	0.020292	0	0
FLNC	2318	broad.mit.edu	37	7	128480651	128480651	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:128480651C>T	uc003vnz.3	+	10	1808	c.1599C>T	c.(1597-1599)TTC>TTT	p.F533F	FLNC_uc003voa.3_Silent_p.F533F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	533	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						ATGGTGTGTTCGAGTGCGAGT	0.617													43	144					0	0	0.048971	0	0
AHCYL2	23382	broad.mit.edu	37	7	129064740	129064740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:129064740C>T	uc011kov.1	+	14	1640	c.1586C>T	c.(1585-1587)TCC>TTC	p.S529F	AHCYL2_uc003vot.2_Missense_Mutation_p.S528F|AHCYL2_uc003vov.2_Missense_Mutation_p.S426F|AHCYL2_uc011kow.1_Missense_Mutation_p.S427F|AHCYL2_uc011kox.1_Missense_Mutation_p.S426F	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	529					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						CTTAGCTGCTCCACAGTGCCT	0.512													40	114					0	0	0.045515	0	0
KLHDC10	23008	broad.mit.edu	37	7	129756408	129756408	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:129756408C>T	uc003vpj.1	+	3	512	c.377C>T	c.(376-378)CCT>CTT	p.P126L	KLHDC10_uc003vpk.1_Missense_Mutation_p.P97L|KLHDC10_uc010lmb.1_Intron	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	126	Kelch 1.										0						GAAGACTATCCTCTCTTCAGG	0.468													33	114					0	0	0.050027	0	0
CPA1	1357	broad.mit.edu	37	7	130025022	130025022	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:130025022T>C	uc003vpx.2	+	8	895	c.823T>C	c.(823-825)TAC>CAC	p.Y275H	CPA1_uc003vpw.2_Missense_Mutation_p.Y109H	NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	275					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CTCGGAGACTTACCACGGCAA	0.552													43	37					0	0	0.045515	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192482	132192482	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:132192482C>T	uc003vra.3	-	2	1200	c.971G>A	c.(970-972)AGG>AAG	p.R324K	PLXNA4_uc003vrc.2_Missense_Mutation_p.R324K|PLXNA4_uc003vrb.2_Missense_Mutation_p.R324K	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	324	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCCAAGGGTCCTGCCAAGCAC	0.592													18	55					0	0	0.062417	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138433924	138433924	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:138433924C>T	uc003vuf.2	-	11	1406	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K	ATP6V0A4_uc003vug.2_Missense_Mutation_p.E390K|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.E390K	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	390	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GGGTTTATCTCCCGGTAGCTG	0.478													96	73					0	0	0.048971	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				32	35					0	0	0.059317	0	0
WEE2	494551	broad.mit.edu	37	7	141408769	141408769	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:141408769G>A	uc003vwn.2	+	1	617	c.211G>A	c.(211-213)GAA>AAA	p.E71K	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	71					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CACATCTTCGGAAAAAGACAA	0.517													112	107					0	0	0.048971	0	0
MGAM	8972	broad.mit.edu	37	7	141750058	141750058	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:141750058C>T	uc003vwy.2	+	23	2665	c.2611C>T	c.(2611-2613)CTT>TTT	p.L871F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	871	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TAAAGTGTATCTTTTATGTGA	0.413													53	167					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	7	142001079	142001079	+	Silent	SNP	C	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:142001079C>A	uc011kro.1	+	2	216	c.171C>A	c.(169-171)ATC>ATA	p.I57I						SubName: Full=V_segment translation product; Flags: Fragment;																		ACAGACAAATCTTGGGGCAGA	0.423													6	23					3.59834e-05	3.62296e-05	0.021553	1	0
OR2A25	392138	broad.mit.edu	37	7	143771362	143771362	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:143771362C>T	uc011ktx.1	+	1	50	c.50C>T	c.(49-51)CCC>CTC	p.P17L		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTGGGATTTCCCATTGGCCCA	0.493													30	102					0	0	0.041601	0	0
ZNF425	155054	broad.mit.edu	37	7	148801946	148801946	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:148801946G>A	uc003wfj.2	-	4	1090	c.1017C>T	c.(1015-1017)TTC>TTT	p.F339F		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	339	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TCTTCAGGCGGAAGCACCGGT	0.662													17	81					0	0	0.033300	0	0
KRBA1	84626	broad.mit.edu	37	7	149419937	149419937	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:149419937C>T	uc003wfz.2	+	7	1061	c.662C>T	c.(661-663)CCT>CTT	p.P221L	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_5'Flank	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	221										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ATCCTTGTGCCTGGGCCCCGG	0.622													25	68					0	0	0.099896	0	0
ZNF862	643641	broad.mit.edu	37	7	149558490	149558490	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:149558490C>T	uc010lpn.2	+	7	2433	c.2241C>T	c.(2239-2241)GAC>GAT	p.D747D	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	747					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						AGAAGTGTGACCGGCACATCC	0.617													18	58					0	0	0.049695	0	0
PRKAG2	51422	broad.mit.edu	37	7	151372516	151372516	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:151372516G>A	uc003wkk.2	-	4	1285	c.674C>T	c.(673-675)CCC>CTC	p.P225L	PRKAG2_uc011kvl.1_Missense_Mutation_p.P101L|PRKAG2_uc003wkj.2_Missense_Mutation_p.P181L|PRKAG2_uc010lqe.1_RNA|PRKAG2_uc003wkm.1_Missense_Mutation_p.P225L	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	225					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		GGCTTTGGAGGGAGCATAGTG	0.627													26	25					0	0	0.034045	0	0
GALNTL5	168391	broad.mit.edu	37	7	151716805	151716805	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr7:151716805G>A	uc003wkp.2	+	9	1474	c.1251G>A	c.(1249-1251)AGG>AGA	p.R417R	GALNTL5_uc003wkq.2_Silent_p.R168R|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Silent_p.R306R	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	417	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		TTGAGTTAAGGAAACGACTGG	0.413													43	30					0	0	0.048971	0	0
CSMD1	64478	broad.mit.edu	37	8	2832061	2832061	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:2832061G>A	uc011kwk.1	-	56	9045	c.8655C>T	c.(8653-8655)TCC>TCT	p.S2885S	CSMD1_uc011kwj.1_Silent_p.S2214S|CSMD1_uc010lrg.2_Silent_p.S895S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2885	Sushi 21.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCCCTCTGCAGGAGTAGTGCA	0.587													8	11					0	0	0.047766	0	0
PCM1	5108	broad.mit.edu	37	8	17823906	17823907	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:17823906_17823907CC>TT	uc003wyi.3	+	20	3567_3568	c.3145_3146CC>TT	c.(3145-3147)CCT>TTT	p.P1049F	PCM1_uc011kyh.1_Missense_Mutation_p.P1049F|PCM1_uc003wyj.3_Missense_Mutation_p.P1050F	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1049					centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		TGTTGCATCTCCTCAAGTACAC	0.381			T	RET|JAK2	papillary thyroid|CML|MPD								29	67					0	0	0.004672	0	0
PEBP4	157310	broad.mit.edu	37	8	22777733	22777733	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:22777733C>T	uc003xcn.1	-	3	314	c.222G>A	c.(220-222)TGG>TGA	p.W74*		NM_144962	NP_659399	Q96S96	PEBP4_HUMAN	phosphatidylethanolamine-binding protein 4	74						lysosome				ovary(1)|large_intestine(1)|breast(1)|skin(1)	4		Prostate(55;0.0453)|Breast(100;0.103)		Colorectal(74;0.0434)|COAD - Colon adenocarcinoma(73;0.124)		TCGGCTCCATCCAGGAGGTGA	0.537													10	31					0	0	0.093190	0	0
ADAM7	8756	broad.mit.edu	37	8	24339714	24339714	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:24339714A>G	uc003xeb.2	+	9	878	c.765A>G	c.(763-765)GAA>GAG	p.E255E	ADAM7_uc003xec.2_Silent_p.E27E	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	255	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GGACACATGAAGATAAAATAG	0.308													18	8					0	0	0.038395	0	0
NEFM	4741	broad.mit.edu	37	8	24773136	24773136	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:24773136G>A	uc003xed.3	+	2	1132	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	NEFM_uc011lac.1_Missense_Mutation_p.E367K|NEFM_uc010lue.2_5'UTR	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	367	Rod.|Coil 2B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CCAGCAGCTGGAAAATGAGCT	0.517													22	48					0	0	0.062417	0	0
CDCA2	157313	broad.mit.edu	37	8	25364179	25364179	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:25364179C>T	uc003xep.1	+	15	2476	c.1997C>T	c.(1996-1998)TCC>TTC	p.S666F	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_3'UTR|CDCA2_uc003xeq.1_Missense_Mutation_p.S651F|CDCA2_uc003xer.1_Missense_Mutation_p.S329F	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	666					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		ATAAAAAGTTCCTCATCGCTT	0.313													26	43					0	0	0.034045	0	0
SCARA5	286133	broad.mit.edu	37	8	27737091	27737091	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:27737091C>T	uc003xgj.2	-	8	1786	c.1346G>A	c.(1345-1347)GGG>GAG	p.G449E	SCARA5_uc010luz.2_Missense_Mutation_p.G224E	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	449	SRCR.|Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		CTTACCTTGCCCGAATCGAGC	0.502													21	54					0	0	0.062417	0	0
EXTL3	2137	broad.mit.edu	37	8	28575056	28575056	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:28575056C>T	uc003xgz.1	+	3	2073	c.1480C>T	c.(1480-1482)CAT>TAT	p.H494Y		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	494	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TACCGAGGTTCATTTCCTGCT	0.587													18	45					0	0	0.049695	0	0
GTF2E2	2961	broad.mit.edu	37	8	30464574	30464574	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:30464574C>T	uc003xig.2	-	6	896	c.643G>A	c.(643-645)GAA>AAA	p.E215K		NM_002095	NP_002086	P29084	T2EB_HUMAN	general transcription factor IIE, polypeptide 2,	215					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription factor TFIIE complex	DNA binding|protein binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.113)|Kidney(114;0.135)		AAAAGCTCACCTTCATCCACA	0.279													23	34					0	0	0.108266	0	0
KCNU1	157855	broad.mit.edu	37	8	36780013	36780013	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:36780013C>T	uc010lvw.2	+	24	2689	c.2602C>T	c.(2602-2604)CCT>TCT	p.P868S	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	868	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TGCAGAAAATCCTTCCAACAT	0.458													17	45					0	0	0.062417	0	0
MYST3	7994	broad.mit.edu	37	8	41791730	41791730	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:41791730G>A	uc010lxb.2	-	18	4552	c.4008C>T	c.(4006-4008)CCC>CCT	p.P1336P	MYST3_uc010lxc.2_Silent_p.P1336P|MYST3_uc003xon.3_Silent_p.P1336P	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1336					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CTTCCCTCGTGGGCTGTTCCT	0.483													45	96					0	0	0.048971	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587513	42587513	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:42587513C>T	uc003xpi.1	+	5	1191	c.1063C>T	c.(1063-1065)CGC>TGC	p.R355C		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	355	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TCATGTGGATCGCTACTCATC	0.448													19	43					0	0	0.038395	0	0
PRKDC	5591	broad.mit.edu	37	8	48749885	48749885	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:48749885A>G	uc003xqi.2	-	58	7706	c.7649T>C	c.(7648-7650)ATA>ACA	p.I2550T	PRKDC_uc003xqj.2_Missense_Mutation_p.I2550T|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2550	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GTGCACTTCTATCTTAGGAGA	0.393								NHEJ					11	22					0	0	0.069234	0	0
PXDNL	137902	broad.mit.edu	37	8	52320904	52320904	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:52320904C>T	uc003xqu.3	-	17	3381	c.3280G>A	c.(3280-3282)GAA>AAA	p.E1094K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1094					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ATCCCACCTTCCTTGATTATT	0.532													43	41					0	0	0.048971	0	0
RP1	6101	broad.mit.edu	37	8	55533703	55533703	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:55533703C>T	uc003xsd.1	+	2	325	c.177C>T	c.(175-177)TCC>TCT	p.S59S	RP1_uc011ldy.1_Silent_p.S59S	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	59	Doublecortin 1.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACCCTCGCTCCTTTAAGTCCT	0.557													41	45					0	0	0.098360	0	0
PLAG1	5324	broad.mit.edu	37	8	57079507	57079507	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:57079507G>A	uc003xsq.3	-	3	1249	c.798C>T	c.(796-798)CTC>CTT	p.L266L	PLAG1_uc003xsr.3_Silent_p.L266L|PLAG1_uc010lyi.2_Silent_p.L266L|PLAG1_uc010lyj.2_Silent_p.L184L	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	266	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Repression domain; contains 3 sumoylation motifs and massively decrease transcription activity.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			TCACCGGAAGGAGCTCGTCTT	0.433			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								87	105					0	0	0.048971	0	0
UBXN2B	137886	broad.mit.edu	37	8	59329508	59329508	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:59329508C>T	uc003xtl.2	+	2	306	c.184C>T	c.(184-186)CAA>TAA	p.Q62*		NM_001077619	NP_001071087	Q14CS0	UBX2B_HUMAN	UBX domain protein 2B	62						cytosol|endoplasmic reticulum|Golgi apparatus|nucleus				ovary(2)	2						GACACCACCTCAACGGTAAGT	0.348													12	13					0	0	0.093190	0	0
PREX2	80243	broad.mit.edu	37	8	69012065	69012065	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:69012065C>T	uc003xxv.1	+	23	2729	c.2702C>T	c.(2701-2703)TCC>TTC	p.S901F	PREX2_uc003xxu.1_Missense_Mutation_p.S901F|PREX2_uc011lez.1_Missense_Mutation_p.S836F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	901					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CAGAGAATATCCAGTTATAAA	0.284													18	30					0	0	0.038395	0	0
C8orf34	116328	broad.mit.edu	37	8	69552622	69552622	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:69552622G>A	uc010lyz.2	+	8	908	c.859G>A	c.(859-861)GAT>AAT	p.D287N	C8orf34_uc003xyb.2_Missense_Mutation_p.D262N	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	287					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			GGATCTTAATGATTTAAGAAT	0.398													10	30					0	0	0.080935	0	0
PRDM14	63978	broad.mit.edu	37	8	70981529	70981529	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:70981529C>T	uc003xym.2	-	2	769	c.567G>A	c.(565-567)GGG>GGA	p.G189G		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	189					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CAGGGGACTTCCCTTCTTGGT	0.587													35	29					0	0	0.069456	0	0
LY96	23643	broad.mit.edu	37	8	74917094	74917094	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:74917094G>A	uc003yad.2	+	2	267	c.176G>A	c.(175-177)GGA>GAA	p.G59E		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	59					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			AGATCCAAAGGATTATTGCAC	0.269													21	52					0	0	0.083992	0	0
CHMP4C	92421	broad.mit.edu	37	8	82644926	82644926	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:82644926C>T	uc003ycl.2	+	1	239	c.65C>T	c.(64-66)CCC>CTC	p.P22L		NM_152284	NP_689497	Q96CF2	CHM4C_HUMAN	chromatin modifying protein 4C	22	Intramolecular interaction with C- terminus (By similarity).				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(2)	2						GCTCCCAGTCCCCAGGAGGCC	0.592													7	6					0	0	0.038147	0	0
RALYL	138046	broad.mit.edu	37	8	85774560	85774560	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:85774560C>T	uc003ycq.3	+	7	859	c.443C>T	c.(442-444)CCA>CTA	p.P148L	RALYL_uc003ycr.3_Missense_Mutation_p.P148L|RALYL_uc003ycs.3_Missense_Mutation_p.P148L|RALYL_uc010lzy.2_Missense_Mutation_p.P137L|RALYL_uc003yct.3_Missense_Mutation_p.P161L|RALYL_uc003ycu.3_Missense_Mutation_p.P75L|RALYL_uc003ycv.3_Missense_Mutation_p.P60L	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	148							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						CGTGTGCCTCCACCTCCCCGT	0.488													8	24					0	0	0.047766	0	0
CA3	761	broad.mit.edu	37	8	86354352	86354352	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:86354352C>T	uc003ydj.2	+	3	366	c.283C>T	c.(283-285)CTT>TTT	p.L95F	CA3_uc011lfv.1_Intron	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	95					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						CCAGTTTCATCTTCACTGGGG	0.512													48	62					0	0	0.048971	0	0
MMP16	4325	broad.mit.edu	37	8	89128840	89128840	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:89128840G>A	uc003yeb.3	-	6	1261	c.979C>T	c.(979-981)CGG>TGG	p.R327W	MMP16_uc003yec.2_Missense_Mutation_p.R327W	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	327	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GTTGGAGGCCGAGGAGGTTTT	0.522													41	111					0	0	0.104719	0	0
C8orf38	137682	broad.mit.edu	37	8	96070152	96070152	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:96070152G>A	uc003yhj.2	+	9	1005	c.989G>A	c.(988-990)AGA>AAA	p.R330K	C8orf38_uc003yhf.2_Missense_Mutation_p.R238K|C8orf38_uc011lgs.1_Intron|C8orf38_uc003yhi.2_Missense_Mutation_p.R278K|C8orf38_uc003yhk.2_RNA|C8orf38_uc003yhl.2_Missense_Mutation_p.R238K	NM_152416	NP_689629	Q330K2	CH038_HUMAN	hypothetical protein LOC137682 precursor	330					biosynthetic process	mitochondrion	transferase activity				0	Breast(36;3.32e-06)					CAGTCATGGAGAAAAACATAT	0.214													92	117					0	0	0.048971	0	0
UBR5	51366	broad.mit.edu	37	8	103307739	103307739	+	Silent	SNP	G	A	A	rs139159922	byFrequency	TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:103307739G>A	uc003ykr.1	-	30	3867	c.3834C>T	c.(3832-3834)TTC>TTT	p.F1278F	UBR5_uc003yks.1_Silent_p.F1278F	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1278					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TCTGTACTAAGAATAGTAAGA	0.488													39	42					0	0	0.092188	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815026	106815026	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:106815026G>A	uc003ymd.2	+	8	2739	c.2716G>A	c.(2716-2718)GAT>AAT	p.D906N	ZFPM2_uc011lhs.1_Missense_Mutation_p.D637N	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	906					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAACAGCCCTGATGTCAGCTA	0.458													18	12					0	0	0.043863	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815087	106815087	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:106815087C>T	uc003ymd.2	+	8	2800	c.2777C>T	c.(2776-2778)TCC>TTC	p.S926F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S657F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	926					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAGCAGCCTTCCCCCAATGGA	0.423													12	22					0	0	0.093190	0	0
OXR1	55074	broad.mit.edu	37	8	107718959	107718959	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:107718959G>A	uc011lht.1	+	8	1312	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K	OXR1_uc003ymf.2_Missense_Mutation_p.E404K|OXR1_uc011lhu.1_Missense_Mutation_p.E397K|OXR1_uc010mcg.2_Intron|OXR1_uc010mch.2_Missense_Mutation_p.E102K|OXR1_uc003ymg.1_Missense_Mutation_p.E337K|OXR1_uc003ymi.1_Missense_Mutation_p.E316K	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	405					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			TTCTACAAATGAAGTTGGGAC	0.358													17	55					0	0	0.028581	0	0
TRHR	7201	broad.mit.edu	37	8	110099909	110099909	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:110099909G>A	uc003ymz.3	+	1	184	c.168G>A	c.(166-168)ATG>ATA	p.M56I		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	56	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			CCAAGCACATGAGGACCCCCA	0.507													60	50					0	0	0.048971	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457655	110457655	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:110457655G>A	uc003yne.2	+	38	5661	c.5557G>A	c.(5557-5559)GGA>AGA	p.G1853R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1853	Extracellular (Potential).|IPT/TIG 11.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGTGATCACAGGAAATGGCTT	0.502										HNSCC(38;0.096)			24	28					0	0	0.091800	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110535604	110535604	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:110535604C>T	uc003yne.2	+	76	12577	c.12473C>T	c.(12472-12474)CCC>CTC	p.P4158L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	4158	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GACCTTACTCCCCTTAGAACA	0.393										HNSCC(38;0.096)			33	90					0	0	0.069456	0	0
SAMD12	401474	broad.mit.edu	37	8	119592994	119592994	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:119592994C>T	uc003yom.2	-	2	281	c.152G>A	c.(151-153)GGA>GAA	p.G51E	SAMD12_uc010mda.1_Missense_Mutation_p.G51E|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	51										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			CTTGGGAGTTCCTTTCTGGTC	0.428													50	40					0	0	0.048971	0	0
COL14A1	7373	broad.mit.edu	37	8	121228683	121228683	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:121228683G>A	uc003yox.2	+	14	1956	c.1691G>A	c.(1690-1692)GGT>GAT	p.G564D	COL14A1_uc003yoy.2_Missense_Mutation_p.G242D|COL14A1_uc010mde.1_Missense_Mutation_p.G242D	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	564	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAGATCAATGGTTATCGAATT	0.383													38	41					0	0	0.080422	0	0
COL14A1	7373	broad.mit.edu	37	8	121298143	121298143	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:121298143G>A	uc003yox.2	+	33	4276	c.4011G>A	c.(4009-4011)GGG>GGA	p.G1337G	COL14A1_uc003yoz.2_Silent_p.G302G	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1337	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACCAGAGTGGGGATTTTCAAA	0.274													27	34					0	0	0.059317	0	0
NSMCE2	286053	broad.mit.edu	37	8	126379036	126379036	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:126379036C>T	uc003yrw.2	+	8	881	c.653C>T	c.(652-654)ACG>ATG	p.T218M		NM_173685	NP_775956	Q96MF7	NSE2_HUMAN	non-SMC element 2, MMS21 homolog	218	SP-RING-type.				DNA recombination|DNA repair	nucleus	ligase activity|zinc ion binding			breast(1)	1	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			TGTAGCCACACGGATATAAGA	0.408													78	176					0	0	0.048971	0	0
ADCY8	114	broad.mit.edu	37	8	131797658	131797658	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:131797658C>T	uc003ytd.3	-	16	3380	c.3124G>A	c.(3124-3126)GCC>ACC	p.A1042T	ADCY8_uc010mds.2_Missense_Mutation_p.A911T	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1042	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCTGACACGGCCATGTAGGTG	0.502										HNSCC(32;0.087)			32	34					0	0	0.050027	0	0
KCNQ3	3786	broad.mit.edu	37	8	133142140	133142140	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:133142140G>A	uc003ytj.2	-	15	2213	c.1988C>T	c.(1987-1989)ACC>ATC	p.T663I	KCNQ3_uc010mdt.2_Missense_Mutation_p.T651I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	663					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGGCGAGGAGGTGCCCTTGGT	0.537													45	86					0	0	0.048971	0	0
FAM135B	51059	broad.mit.edu	37	8	139144923	139144923	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:139144923G>A	uc003yuy.2	-	20	4305	c.4134C>T	c.(4132-4134)ATC>ATT	p.I1378I	FAM135B_uc003yux.2_Silent_p.I1279I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1378										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CGGCTCGGCCGATCAGGGTGT	0.537										HNSCC(54;0.14)			107	205					0	0	0.048971	0	0
TSNARE1	203062	broad.mit.edu	37	8	143425608	143425608	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:143425608G>A	uc003ywk.2	-	4	582	c.464C>T	c.(463-465)GCC>GTC	p.A155V	TSNARE1_uc011lju.1_Missense_Mutation_p.A155V|TSNARE1_uc003ywj.2_Missense_Mutation_p.A155V|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	155					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					AGTGGGCTCGGCCTTCAGCAG	0.637													22	27					0	0	0.062417	0	0
CYP11B2	1585	broad.mit.edu	37	8	143996221	143996221	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:143996221G>A	uc003yxk.1	-	4	702	c.699C>T	c.(697-699)TCC>TCT	p.S233S		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	233					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GCTGGACGGTGGATTTGAACA	0.582									Familial_Hyperaldosteronism_type_I				30	20					0	0	0.054565	0	0
PPP1R16A	84988	broad.mit.edu	37	8	145722742	145722742	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:145722742G>A	uc003zdd.2	+	2	1078	c.165G>A	c.(163-165)CGG>CGA	p.R55R	uc003zde.1_Silent_p.F124F|PPP1R16A_uc003zdf.2_Silent_p.R55R	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	55				Missing (in Ref. 1; BAC03452).		plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			AGCGTCCCCGGAAGGAGGCAG	0.647													14	24					0	0	0.024245	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971116	21971116	+	Missense_Mutation	SNP	G	A	A	rs11552823		TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:21971116G>A	uc003zpk.2	-	2	454	c.242C>T	c.(241-243)CCC>CTC	p.P81L	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.T136T	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	81	ANK 3.		P -> T (in CMM2; loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.P81L(8)|p.P81H(2)|p.T79fs*37(1)|p.L65fs*38(1)|p.A76fs*64(1)|p.P81T(1)|p.E61_L94del(1)|p.A68fs*3(1)|p.P81_A85del(1)|p.R80fs*34(1)|p.P81fs*38(1)|p.P81S(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GTCGTGCACGGGTCGGGTGAG	0.741		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			55	31					0	0	0.048971	0	0
ELAVL2	1993	broad.mit.edu	37	9	23731111	23731111	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:23731111C>T	uc003zpu.2	-	3	517	c.242G>A	c.(241-243)GGA>GAA	p.G81E	ELAVL2_uc003zps.2_Missense_Mutation_p.G81E|ELAVL2_uc003zpt.2_Missense_Mutation_p.G81E|ELAVL2_uc003zpv.2_Missense_Mutation_p.G81E|ELAVL2_uc003zpw.2_Missense_Mutation_p.G81E	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	81	RRM 1.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		AAAGCCATATCCCAAGCTCTG	0.378													7	11					0	0	0.029380	0	0
SMU1	55234	broad.mit.edu	37	9	33062139	33062139	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:33062139G>A	uc003zsf.1	-	5	646	c.538C>T	c.(538-540)CCT>TCT	p.P180S	SMU1_uc010mjo.1_Missense_Mutation_p.P180S|SMU1_uc010mjp.1_Missense_Mutation_p.P180S|SMU1_uc011lnu.1_Missense_Mutation_p.P19S	NM_018225	NP_060695	Q2TAY7	SMU1_HUMAN	smu-1 suppressor of mec-8 and unc-52 homolog	180						cytoplasm|nucleus				ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.11)		GTCATACCAGGAGGAAGCAAT	0.423													22	50					0	0	0.083992	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624805	33624805	+	Silent	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:33624805A>G	uc010mjx.2	+	1	583	c.534A>G	c.(532-534)AGA>AGG	p.R178R		NM_004039	NP_004030			annexin A2 isoform 2												0						CAAAGGGTAGAAGAGCAGAGG	0.473											OREG0019140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	25					0	0	0.062417	0	0
KIAA1161	57462	broad.mit.edu	37	9	34371962	34371962	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:34371962G>A	uc003zue.3	-	3	1147	c.980C>T	c.(979-981)GCC>GTC	p.A327V		NM_020702	NP_065753	Q6NSJ0	K1161_HUMAN	hypothetical protein LOC57462	327	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|breast(1)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		CTGGTCCACGGCGCGCCCGTA	0.587													17	46					0	0	0.028581	0	0
GBA2	57704	broad.mit.edu	37	9	35741007	35741007	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:35741007C>T	uc003zxw.2	-	5	1365	c.841G>A	c.(841-843)GAA>AAA	p.E281K	GBA2_uc003zxx.1_5'Flank|GBA2_uc011lpb.1_Missense_Mutation_p.E281K|GBA2_uc011lpc.1_Missense_Mutation_p.E281K|GBA2_uc011lpd.1_Missense_Mutation_p.E287K|GBA2_uc003zxy.1_5'UTR	NM_020944	NP_065995	Q9HCG7	GBA2_HUMAN	bile acid beta-glucosidase	281	Extracellular (Potential).				bile acid metabolic process|glucosylceramide catabolic process|O-glycoside catabolic process	integral to membrane|microsome|plasma membrane|smooth endoplasmic reticulum	beta-glucosidase activity|glucosylceramidase activity			ovary(3)|skin(1)	4	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCTAGAGCTTCGTCCCCTTCA	0.567													17	23					0	0	0.038395	0	0
OR2S2	56656	broad.mit.edu	37	9	35957626	35957626	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:35957626G>A	uc011lpi.1	-	1	526	c.470C>T	c.(469-471)TCC>TTC	p.S157F		NM_019897	NP_063950	Q9NQN1	OR2S1_HUMAN	olfactory receptor, family 2, subfamily S,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00613)|STAD - Stomach adenocarcinoma(86;0.194)			GTGTACCACGGAAGCAGCACC	0.532													35	64					0	0	0.069456	0	0
RORB	6096	broad.mit.edu	37	9	77282779	77282779	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:77282779A>C	uc004aji.2	+	8	1155	c.1106A>C	c.(1105-1107)GAG>GCG	p.E369A	RORB_uc004ajh.2_Missense_Mutation_p.E358A	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	369	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						ACCGAGGAGGAGATCGCTTTG	0.373													31	43					0	0	0.054565	0	0
GABBR2	9568	broad.mit.edu	37	9	101068621	101068621	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:101068621C>G	uc004ays.2	-	15	2167	c.2011G>C	c.(2011-2013)GGT>CGT	p.G671R		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	671	Helical; Name=5; (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	AAGAAACAACCGAACAACTGA	0.527													8	15					0	0	0.038147	0	0
BAAT	570	broad.mit.edu	37	9	104130542	104130542	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:104130542G>A	uc010mtd.2	-	3	638	c.529C>T	c.(529-531)CGG>TGG	p.R177W	BAAT_uc004bbd.3_Missense_Mutation_p.R177W	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	177					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	AGGCTGGCCCGAAATTCAAGC	0.478													8	26					0	0	0.058154	0	0
SVEP1	79987	broad.mit.edu	37	9	113197561	113197561	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:113197561C>T	uc010mtz.2	-	29	5185	c.4848G>A	c.(4846-4848)GTG>GTA	p.V1616V		NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1616	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCACTTTCCCCACAATTCCTG	0.438													38	41					0	0	0.069456	0	0
LPAR1	1902	broad.mit.edu	37	9	113704254	113704254	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:113704254G>A	uc004bfa.2	-	4	495	c.240C>T	c.(238-240)TTC>TTT	p.F80F	LPAR1_uc011lwm.1_Silent_p.F81F|LPAR1_uc004bfb.2_Silent_p.F80F|LPAR1_uc004bfc.2_Silent_p.F80F|LPAR1_uc011lwn.1_Silent_p.F62F|LPAR1_uc011lwo.1_Silent_p.F81F|LPAR1_uc010mub.2_Silent_p.F80F	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	80	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						TAGGAAAATGGAAGCGGCGGT	0.458													37	62					0	0	0.059317	0	0
ZFP37	7539	broad.mit.edu	37	9	115805766	115805766	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:115805766C>A	uc004bgm.1	-	4	1160	c.1132G>T	c.(1132-1134)GAA>TAA	p.E378*	ZFP37_uc011lwz.1_Nonsense_Mutation_p.E393*|ZFP37_uc011lxa.1_Nonsense_Mutation_p.E379*	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	378	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCAGCACATTCATAGGGCTTT	0.418													26	48					2.61193e-14	2.65053e-14	0.041601	1	0
BSPRY	54836	broad.mit.edu	37	9	116132216	116132216	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:116132216C>T	uc004bhg.3	+	6	1051	c.1003C>T	c.(1003-1005)CGT>TGT	p.R335C	BSPRY_uc010muw.2_3'UTR	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	335	B30.2/SPRY.				calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						TCAGGAGTTTCGTTTCTCACA	0.617													19	39					0	0	0.049695	0	0
C9orf43	257169	broad.mit.edu	37	9	116186556	116186556	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:116186556C>T	uc004bho.3	+	8	1163	c.767C>T	c.(766-768)TCT>TTT	p.S256F	C9orf43_uc004bhp.2_Missense_Mutation_p.S256F	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	256											0						AGTGTGATTTCTTCTAAGATG	0.433													72	105					0	0	0.048971	0	0
PAPPA	5069	broad.mit.edu	37	9	119109456	119109456	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:119109456C>T	uc004bjn.2	+	15	4313	c.3932C>T	c.(3931-3933)TCC>TTC	p.S1311F	PAPPA_uc011lxq.1_Missense_Mutation_p.S686F	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1311	Sushi 2.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGTCAATGTTCCTTCCAGTGC	0.552													21	33					0	0	0.076483	0	0
ASTN2	23245	broad.mit.edu	37	9	119568061	119568061	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:119568061G>A	uc004bjs.1	-	13	2347	c.2246C>T	c.(2245-2247)TCC>TTC	p.S749F	ASTN2_uc004bjr.1_Missense_Mutation_p.S745F|ASTN2_uc004bjt.1_Missense_Mutation_p.S698F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	749	Extracellular (Potential).|EGF-like 3.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CATTAAGCAGGATTTTCCATC	0.478													43	91					0	0	0.048971	0	0
ASTN2	23245	broad.mit.edu	37	9	119903704	119903704	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:119903704C>T	uc004bjs.1	-	4	1170	c.1069G>A	c.(1069-1071)GAG>AAG	p.E357K	ASTN2_uc004bjr.1_Missense_Mutation_p.E357K|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	357	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGGAAACTCTCCTTGAACTTC	0.592													26	37					0	0	0.108266	0	0
DBC1	1620	broad.mit.edu	37	9	121976406	121976406	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:121976406A>G	uc004bkc.2	-	6	1169	c.713T>C	c.(712-714)CTG>CCG	p.L238P	DBC1_uc004bkd.2_Missense_Mutation_p.L238P	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	238	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CTTCTCTTGCAGATACTGAGG	0.453													17	24					0	0	0.043863	0	0
OR1J2	26740	broad.mit.edu	37	9	125273492	125273492	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:125273492G>A	uc004bmj.1	+	4	1267	c.412G>A	c.(412-414)GAA>AAA	p.E138K	OR1J2_uc011lyv.1_Missense_Mutation_p.E138K	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						CATCATGAGGGAAGAGCTCTG	0.473													26	36					0	0	0.108266	0	0
OR1N2	138882	broad.mit.edu	37	9	125315812	125315812	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:125315812C>T	uc011lyx.1	+	1	364	c.364C>T	c.(364-366)CTT>TTT	p.L122F		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	122	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						ATATTTCCTCCTTATGTTTGG	0.493													61	92					0	0	0.048971	0	0
OR1L8	138881	broad.mit.edu	37	9	125330436	125330436	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:125330436G>A	uc004bmp.1	-	1	321	c.321C>T	c.(319-321)GCC>GCT	p.A107A		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						TGTTGCCCAAGGCATAGAGAA	0.507													19	39					0	0	0.055883	0	0
COL5A1	1289	broad.mit.edu	37	9	137644476	137644476	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr9:137644476G>A	uc004cfe.2	+	14	2086	c.1704G>A	c.(1702-1704)GGG>GGA	p.G568G		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	568	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GTCTCACAGGGAGACCTGGCC	0.622													10	5					0	0	0.058154	0	0
SHOX	6473	broad.mit.edu	37	X	591839	591839	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:591839T>A	uc004cph.1	+	2	898	c.207T>A	c.(205-207)CAT>CAA	p.H69Q	SHOX_uc004cpi.2_Missense_Mutation_p.H69Q	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	69					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCCCGGTGCATTTGTTCAAGG	0.612													41	85					0	0	0.042209	0	0
MXRA5	25878	broad.mit.edu	37	X	3229592	3229592	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:3229592C>T	uc004crg.3	-	7	6809	c.6652G>A	c.(6652-6654)GAT>AAT	p.D2218N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2218	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACAGGTAATCTCCGGCATCT	0.453													24	7					0	0	0.108266	0	0
MXRA5	25878	broad.mit.edu	37	X	3238348	3238348	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:3238348G>A	uc004crg.3	-	5	5535	c.5378C>T	c.(5377-5379)CCG>CTG	p.P1793L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1793						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CGTGGTCTGCGGAGTGTGCAA	0.483													15	5					0	0	0.020292	0	0
MXRA5	25878	broad.mit.edu	37	X	3240517	3240517	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:3240517C>T	uc004crg.3	-	5	3366	c.3209G>A	c.(3208-3210)GGA>GAA	p.G1070E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1070						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TAGCATATTTCCTCCCTGTAG	0.458													37	10					0	0	0.074837	0	0
SHROOM2	357	broad.mit.edu	37	X	9905572	9905572	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:9905572C>T	uc004csu.1	+	7	4076	c.3986C>T	c.(3985-3987)TCC>TTC	p.S1329F	SHROOM2_uc004csv.2_Missense_Mutation_p.S164F|SHROOM2_uc011mic.1_Missense_Mutation_p.S164F|SHROOM2_uc004csw.1_Missense_Mutation_p.S164F	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1329	ASD2.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AAGGATAAGTCCCTGGCCGAC	0.557													27	9					0	0	0.030593	0	0
SHROOM2	357	broad.mit.edu	37	X	9914760	9914760	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:9914760C>T	uc004csu.1	+	10	4724	c.4634C>T	c.(4633-4635)GCC>GTC	p.A1545V	SHROOM2_uc004csv.2_Missense_Mutation_p.A379V|SHROOM2_uc011mic.1_Missense_Mutation_p.A380V|SHROOM2_uc004csw.1_Missense_Mutation_p.A380V	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1545	ASD2.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CACGAGGACGCCAAGGAGCTC	0.557													3	2					0	0	0.004672	0	0
CXorf22	170063	broad.mit.edu	37	X	35969374	35969374	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:35969374C>T	uc004ddj.2	+	5	842	c.783C>T	c.(781-783)TTC>TTT	p.F261F	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	261										large_intestine(1)|lung(1)|ovary(1)	3						GTCCTGTTTTCTTCGGATCAT	0.403													13	2					0	0	0.105934	0	0
WDR45	11152	broad.mit.edu	37	X	48934105	48934105	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:48934105G>A	uc004dmk.1	-	6	592	c.420C>T	c.(418-420)ACC>ACT	p.T140T	PRAF2_uc004dmi.2_5'Flank|PRAF2_uc011mmt.1_Intron|WDR45_uc004dmj.1_Silent_p.T90T|WDR45_uc004dml.1_Silent_p.T141T|WDR45_uc004dmm.1_Silent_p.T105T|WDR45_uc010nim.1_Silent_p.T140T|WDR45_uc004dmn.1_Silent_p.T31T|WDR45_uc004dmo.1_Silent_p.T163T|WDR45_uc004dmp.1_Silent_p.T141T	NM_001029896	NP_001025067	Q9Y484	WIPI4_HUMAN	WD repeat domain 45 isoform 2	140					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1						GGTTGTCCCGGGTATCAAACT	0.532													40	16					0	0	0.045515	0	0
WNK3	65267	broad.mit.edu	37	X	54264844	54264844	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:54264844G>A	uc004dtd.1	-	19	4243	c.3804C>T	c.(3802-3804)TCC>TCT	p.S1268S	WNK3_uc004dtc.1_Silent_p.S1315S	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1268					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						TATCAGCTGTGGACTCCCGTG	0.423													16	5					0	0	0.024245	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69424192	69424192	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:69424192G>A	uc004dxx.1	+	6	782	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	229					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						TGGTGAGAACGAAGTTTTCAA	0.468													17	2					0	0	0.033300	0	0
MAGT1	84061	broad.mit.edu	37	X	77130979	77130979	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:77130979G>A	uc004fof.2	-	2	376	c.314C>T	c.(313-315)TCC>TTC	p.S105F	MAGT1_uc004fog.3_RNA|MAGT1_uc004ect.3_Missense_Mutation_p.S105F	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	73					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						GACGATAACGGAGTAATTTCT	0.408													77	39					0	0	0.048971	0	0
PCDH19	57526	broad.mit.edu	37	X	99597063	99597063	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:99597063A>G	uc010nmz.2	-	5	4362	c.2686T>C	c.(2686-2688)TTC>CTC	p.F896L	PCDH19_uc004efw.3_Missense_Mutation_p.F848L|PCDH19_uc004efx.3_Missense_Mutation_p.F849L	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	896	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						AAGTCCTTGAAGGTGGAGCTG	0.463													37	5					0	0	0.098360	0	0
TNMD	64102	broad.mit.edu	37	X	99849347	99849347	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:99849347G>A	uc004efy.3	+	4	637	c.411G>A	c.(409-411)GAG>GAA	p.E137E	TNMD_uc004efz.2_Silent_p.E137E	NM_022144	NP_071427	Q9H2S6	TNMD_HUMAN	tenomodulin	137	Extracellular (Potential).|BRICHOS.					integral to membrane				central_nervous_system(1)	1						AACCAGAAGAGGAAATAGATG	0.254													16	3					0	0	0.043863	0	0
BTK	695	broad.mit.edu	37	X	100608315	100608315	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:100608315G>A	uc004ehg.2	-	18	1968	c.1775C>T	c.(1774-1776)TCC>TTC	p.S592F	BTK_uc004ehf.2_Missense_Mutation_p.S92F|BTK_uc010nnh.2_RNA|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_RNA|BTK_uc010nnl.2_Missense_Mutation_p.S68F|BTK_uc010nnm.2_Missense_Mutation_p.S162F|BTK_uc010nnn.2_Missense_Mutation_p.S416F|BTK_uc010nno.2_Missense_Mutation_p.S626F	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	592	Protein kinase.		S -> P (in XLA).		calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding	p.S592F(1)		lung(3)|central_nervous_system(2)|ovary(1)	6						CTTCCCCAGGGAGTAAATTTC	0.438									Agammaglobulinemia_X-linked				63	21					0	0	0.048971	0	0
RGAG1	57529	broad.mit.edu	37	X	109696356	109696356	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:109696356G>A	uc004eor.1	+	3	2757	c.2511G>A	c.(2509-2511)GTG>GTA	p.V837V	RGAG1_uc011msr.1_Silent_p.V837V	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	837										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TGCCACAAGTGAAGGCTCCCA	0.537													80	25					0	0	0.048971	0	0
DOCK11	139818	broad.mit.edu	37	X	117744240	117744240	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:117744240C>T	uc004eqp.2	+	28	3018	c.2955C>T	c.(2953-2955)CCC>CCT	p.P985P	DOCK11_uc004eqq.2_Silent_p.P751P	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	985					blood coagulation	cytosol	GTP binding			ovary(3)	3						TTCAGCTTCCCCGAGGCCAGA	0.383													15	6					0	0	0.028581	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685242	125685242	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:125685242G>A	uc004eul.2	-	1	1601	c.1350C>T	c.(1348-1350)CTC>CTT	p.L450L		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	450										skin(3)|ovary(1)	4						GGCCTGCAGGGAGAGGCCCCC	0.557													34	7					0	0	0.074837	0	0
GPR112	139378	broad.mit.edu	37	X	135477634	135477634	+	Silent	SNP	C	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:135477634C>T	uc004ezu.1	+	19	8457	c.8166C>T	c.(8164-8166)ACC>ACT	p.T2722T	GPR112_uc010nsb.1_Silent_p.T2517T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2722	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ACCACCTCACCCATTTTGGAG	0.388													13	3					0	0	0.105934	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798422	148798422	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:148798422G>A	uc004fdq.2	+	5	1378	c.1276G>A	c.(1276-1278)GGA>AGA	p.G426R	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.G397R	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	426						cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GAGAGAGGAGGGAGAGGGAGT	0.537													25	10					0	0	0.083992	0	0
IL9R	3581	broad.mit.edu	37	X	155237263	155237263	+	Silent	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:155237263G>A	uc004fnv.1	+	8	1142	c.963G>A	c.(961-963)GGG>GGA	p.G321G	IL9R_uc010nvn.2_Silent_p.G300G|IL9R_uc004fnu.1_Intron	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	321	Cytoplasmic (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TACACAATGGGAACTTCCAGG	0.572													25	41					0	0	0.054565	0	0
KDM5D	8284	broad.mit.edu	37	Y	21871433	21871433	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrY:21871433G>A	uc004fug.2	-	20	3134	c.2846C>T	c.(2845-2847)TCC>TTC	p.S949F	KDM5D_uc011naz.1_Missense_Mutation_p.S980F|KDM5D_uc010nwy.2_Missense_Mutation_p.S892F|KDM5D_uc011nba.1_3'UTR|KDM5D_uc004fuf.2_Missense_Mutation_p.S124F	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	949					chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	AGAAGGGCTGGAGGCTATCTT	0.577													18	4					0	0	0.049695	0	0
ARMC4	55130	broad.mit.edu	37	10	28151489	28151489	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr10:28151489delT	uc009xky.2	-	18	2771	c.2673delA	c.(2671-2673)AAAfs	p.K891fs	ARMC4_uc010qds.1_Frame_Shift_Del_p.K416fs|ARMC4_uc010qdt.1_Frame_Shift_Del_p.K583fs|ARMC4_uc001itz.2_Frame_Shift_Del_p.K891fs	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	891	ARM 7.						binding			ovary(4)|skin(2)	6						TGTTATCTGATTTCAGTAAAT	0.353													14	27	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	43283606	43283606	+	RNA	DEL	A	-	-			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr11:43283606delA	uc001mxe.1	-	2		c.1330delT								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		AAGCAAATGTAAAAAAAAAAA	0.388													2	4	---	---	---	---					
SBK1	388228	broad.mit.edu	37	16	28328743	28328743	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr16:28328743delC	uc002dpd.2	+	2	820	c.31delC	c.(31-33)CCCfs	p.P11fs		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	11						cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						GCCTGAGCCGCCCCGCTCCCT	0.667											OREG0023701	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	34	---	---	---	---					
EXOSC7	23016	broad.mit.edu	37	3	45048959	45048959	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr3:45048959delC	uc003coi.2	+	7	692	c.663delC	c.(661-663)TGCfs	p.C221fs	EXOSC7_uc003coh.1_Frame_Shift_Del_p.C156fs|EXOSC7_uc010his.1_Frame_Shift_Del_p.C140fs|EXOSC7_uc003coj.2_Frame_Shift_Del_p.C221fs	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	221					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		AGGAGGCCTGCTCGCTGGCCA	0.617													20	48	---	---	---	---					
ARC	23237	broad.mit.edu	37	8	143695114	143695114	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chr8:143695114delG	uc003ywn.1	-	1	720	c.519delC	c.(517-519)GCCfs	p.A173fs		NM_015193	NP_056008	Q7LC44	ARC_HUMAN	activity-regulated cytoskeleton-associated	173					endocytosis	acrosomal vesicle|cell junction|dendritic spine|endosome|postsynaptic density|postsynaptic membrane				breast(1)	1	all_cancers(97;3.55e-12)|all_epithelial(106;1.03e-08)|Lung NSC(106;0.000353)|all_lung(105;0.00092)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.0279)				GCGGGGTGATGGCGTAGGGGC	0.741													2	4	---	---	---	---					
RBMX	27316	broad.mit.edu	37	X	135961585	135961586	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DA-A1HY-06A-11D-A19A-08	TCGA-DA-A1HY-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	88f2c496-3eb4-4c03-b3a5-8d5a55803aaf	567a575c-97b9-475c-8954-5f4e868f0a83	g.chrX:135961585_135961586insT	uc004fae.1	-	2	211_212	c.1_2insA	c.(1-3)ATGfs	p.M1fs	RBMX_uc011mwf.1_Frame_Shift_Ins_p.M1fs|RBMX_uc004fad.1_Frame_Shift_Ins_p.M1fs|RBMX_uc011mwg.1_Translation_Start_Site|RBMX_uc004faf.1_Translation_Start_Site|RBMX_uc010nsf.1_Intron|RBMX_uc004fag.1_Intron|SNORD61_uc004fah.1_5'Flank	NM_002139	NP_002130	P38159	HNRPG_HUMAN	RNA binding motif protein, X-linked isoform 1	1						catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TGCTTCAACCATGTTTTTTTTT	0.391													7	44	---	---	---	---					
