Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CTSS	1520	broad.mit.edu	37	1	150727538	150727538	+	Missense_Mutation	SNP	C	T	T	rs140031053	by1000genomes	TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr1:150727538C>T	uc001evn.2	-	4	471	c.338G>A	c.(337-339)CGG>CAG	p.R113Q	CTSS_uc010pcj.1_Intron|CTSS_uc001evo.1_Missense_Mutation_p.R113Q	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	113					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			AGGCAATATCCGATTAGGGTT	0.433000													20	215	---	---	---	---	0	0	0.002299	0	0
DUSP5	1847	broad.mit.edu	37	10	112262508	112262508	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:112262508C>G	uc001kzd.2	+	2	664	c.409C>G	c.(409-411)CCT>GCT	p.P137A		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	137	Rhodanese.				endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		CTCGGAATATCCTGAGTGTTG	0.423000													17	74	---	---	---	---	0	0	0.006122	0	0
PHRF1	57661	broad.mit.edu	37	11	587445	587445	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:587445G>A	uc001lqe.2	+	4	532	c.401G>A	c.(400-402)TGC>TAC	p.C134Y	PHRF1_uc010qwc.1_Missense_Mutation_p.C134Y|PHRF1_uc010qwd.1_Missense_Mutation_p.C133Y|PHRF1_uc010qwe.1_Missense_Mutation_p.C130Y	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	134	RING-type; degenerate.						RNA polymerase binding|zinc ion binding				0						TGCCTGGACTGCATTGTCGAA	0.557000													4	89	---	---	---	---	0	0	0.001168	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18633034	18633034	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:18633034C>T	uc001moy.2	-	5	2170	c.1954G>A	c.(1954-1956)GAA>AAA	p.E652K		NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	652	Potential.									breast(1)	1						CTCTTTGCTTCTTCCTTCTGC	0.333000													8	82	---	---	---	---	0	0	0.006214	0	0
OR4C11	219429	broad.mit.edu	37	11	55371297	55371297	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:55371297G>T	uc010rii.1	-	1	553	c.553C>A	c.(553-555)CTT>ATT	p.L185I		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGCAGGCAAGTTTCAACAAG	0.393000													18	77	---	---	---	---	6.33239e-15	7.43367e-15	0.010504	1	0
KDM2A	22992	broad.mit.edu	37	11	67018081	67018081	+	Silent	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:67018081G>A	uc001ojw.2	+	17	3444	c.2580G>A	c.(2578-2580)GAG>GAA	p.E860E	KDM2A_uc001ojx.2_Intron|KDM2A_uc001ojy.2_Silent_p.E554E|KDM2A_uc010rpn.1_Silent_p.E421E|KDM2A_uc001ojz.1_Silent_p.E318E|KDM2A_uc001oka.2_5'Flank	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	860					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						aggaggaagaggaggaggagg	0.473000													3	15	---	---	---	---	0	0	0.004672	0	0
KIF21A	55605	broad.mit.edu	37	12	39716485	39716485	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr12:39716485G>A	uc001rly.2	-	27	3802	c.3656C>T	c.(3655-3657)TCT>TTT	p.S1219F	KIF21A_uc001rlv.2_Missense_Mutation_p.S224F|KIF21A_uc001rlw.2_Missense_Mutation_p.S536F|KIF21A_uc001rlx.2_Missense_Mutation_p.S1206F|KIF21A_uc001rlz.2_Missense_Mutation_p.S1183F|KIF21A_uc010skl.1_Missense_Mutation_p.S1199F	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1219					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				GCCTATCTTAGAAGGTAAGCC	0.403000													8	84	---	---	---	---	0	0	0.008291	0	0
TBX3	6926	broad.mit.edu	37	12	115120663	115120663	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr12:115120663G>A	uc001tvt.1	-	1	1307	c.343C>T	c.(343-345)CAG>TAG	p.Q115*	TBX3_uc001tvu.1_Nonsense_Mutation_p.Q115*|TBX3_uc010syw.1_Nonsense_Mutation_p.Q115*	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	115	T-box; first part.				anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		TTGTGAAACTGATCCCAAAGT	0.572000													7	64	---	---	---	---	0	0	0.001984	0	0
POLE	5426	broad.mit.edu	37	12	133220461	133220461	+	Silent	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr12:133220461G>A	uc001uks.1	-	33	4296	c.4252C>T	c.(4252-4254)CTG>TTG	p.L1418L	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Silent_p.L222L|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Silent_p.L1391L	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1418					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GGCGCTGACAGCTCAGCGTTG	0.542000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					3	41	---	---	---	---	0	0	0.004672	0	0
PTGR2	145482	broad.mit.edu	37	14	74340912	74340912	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr14:74340912G>A	uc001xow.2	+	4	503	c.343G>A	c.(343-345)GAA>AAA	p.E115K	PTGR2_uc010tue.1_Missense_Mutation_p.E115K|PTGR2_uc001xox.2_Missense_Mutation_p.E115K|ZNF410_uc001xoy.1_RNA	NM_001146154	NP_001139626	Q8N8N7	PTGR2_HUMAN	prostaglandin reductase 2	115					prostaglandin metabolic process		15-oxoprostaglandin 13-oxidase activity|zinc ion binding				0						AAATAGCCTTGAAAAGGTGAT	0.328000													9	77	---	---	---	---	0	0	0.010729	0	0
AHNAK2	113146	broad.mit.edu	37	14	105416999	105416999	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr14:105416999C>G	uc010axc.1	-	7	4909	c.4789G>C	c.(4789-4791)GAT>CAT	p.D1597H	AHNAK2_uc001ypx.2_Missense_Mutation_p.D1497H	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1597						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCTTAACATCTATCTGGGGC	0.607000													7	89	---	---	---	---	0	0	0.004482	0	0
C15orf63	25764	broad.mit.edu	37	15	44093955	44093955	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr15:44093955G>A	uc001ztf.2	+	4	517	c.341G>A	c.(340-342)CGG>CAG	p.R114Q	ELL3_uc001zsx.1_5'Flank|C15orf63_uc001ztb.2_Missense_Mutation_p.R160Q|SERINC4_uc001ztc.1_5'Flank|SERINC4_uc001ztd.1_5'Flank|SERINC4_uc010bds.1_5'Flank|SERINC4_uc001zte.1_5'Flank|C15orf63_uc001ztg.1_3'UTR	NM_016400	NP_057484	Q9NX55	HYPK_HUMAN	chromosome 15 open reading frame 63	114	Potential.										0						CGCAGTTTGCGGGAACACATG	0.428000													11	61	---	---	---	---	0	0	0.001368	0	0
WDR76	79968	broad.mit.edu	37	15	44120432	44120432	+	Silent	SNP	A	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr15:44120432A>G	uc001zti.1	+	2	353	c.330A>G	c.(328-330)CAA>CAG	p.Q110Q		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	110											0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		CCACGCTGCAAAATTCATCCT	0.408000													24	69	---	---	---	---	0	0	0.004656	0	0
SPATA5L1	79029	broad.mit.edu	37	15	45695663	45695663	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr15:45695663C>T	uc001zve.2	+	1	1145	c.1036C>T	c.(1036-1038)CGG>TGG	p.R346W	uc001zvd.2_5'Flank|SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	346						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		AGCCACTAACCGGCCGGACGC	0.682000													3	66	---	---	---	---	0	0	0.004672	0	0
FBN1	2200	broad.mit.edu	37	15	48802244	48802244	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr15:48802244C>T	uc001zwx.1	-	14	2039	c.1711G>A	c.(1711-1713)GAA>AAA	p.E571K		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	571	EGF-like 8; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTATTACCTTCACAGTTCTTC	0.408000													6	56	---	---	---	---	0	0	0.001168	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49320810	49320810	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr15:49320810C>T	uc001zxe.1	-	5	868	c.734G>A	c.(733-735)GGC>GAC	p.G245D	SECISBP2L_uc001zxd.1_Missense_Mutation_p.G245D|SECISBP2L_uc010bep.1_Missense_Mutation_p.G7D|SECISBP2L_uc010beq.1_Intron	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	245										breast(1)|skin(1)	2						TCTTCTCCTGCCCTTGGACTT	0.473000													7	93	---	---	---	---	0	0	0.003080	0	0
HSD3B7	80270	broad.mit.edu	37	16	30997755	30997755	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:30997755G>A	uc002eaf.2	+	4	440	c.334G>A	c.(334-336)GTG>ATG	p.V112M	HSD3B7_uc010cac.2_Missense_Mutation_p.V112M|HSD3B7_uc002eag.2_Missense_Mutation_p.V112M|HSD3B7_uc002eah.2_Missense_Mutation_p.V112M	NM_025193	NP_079469	Q9H2F3	3BHS7_HUMAN	hydroxy-delta-5-steroid dehydrogenase, 3 beta-	112					bile acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity				0						TACCCGGAACGTGATCGAGGC	0.577000													10	30	---	---	---	---	0	0	0.008291	0	0
WDR45L	56270	broad.mit.edu	37	17	80583323	80583323	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr17:80583323G>C	uc002kfq.2	-	5	564	c.369C>G	c.(367-369)TTC>TTG	p.F123L	WDR45L_uc002kfr.2_RNA	NM_019613	NP_062559	Q5MNZ6	WIPI3_HUMAN	WDR45-like	123					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1	Breast(20;0.00106)|all_neural(118;0.0952)	all_cancers(8;0.101)|all_epithelial(8;0.198)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.0835)			GTGTGAATGTGAACACCTTAA	0.453000													6	62	---	---	---	---	0	0	0.001168	0	0
OR7A5	26659	broad.mit.edu	37	19	14938639	14938639	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr19:14938639G>T	uc002mzw.2	-	1	638	c.415C>A	c.(415-417)CAC>AAC	p.H139N	OR7A5_uc010xoa.1_Missense_Mutation_p.H139N	NM_017506	NP_059976	Q15622	OR7A5_HUMAN	olfactory receptor, family 7, subfamily A,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(2)	2						CCACAGAGGTGAGGGTTCATA	0.498000													11	54	---	---	---	---	9.70103e-10	1.11459e-09	0.008291	1	0
RYR1	6261	broad.mit.edu	37	19	38958277	38958277	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr19:38958277A>T	uc002oit.2	+	25	3336	c.3206A>T	c.(3205-3207)GAC>GTC	p.D1069V	RYR1_uc002oiu.2_Missense_Mutation_p.D1069V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1069	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCTCGTTGTGACCGGGTGCGC	0.557000													23	109	---	---	---	---	0	0	0.004656	0	0
CACNG7	59284	broad.mit.edu	37	19	54418665	54418665	+	Silent	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr19:54418665C>T	uc002qcr.1	+	3	345	c.330C>T	c.(328-330)CTC>CTT	p.L110L	CACNG7_uc010era.1_Silent_p.L110L	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	110	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		GCCTCTTCCTCGTGTTCACGG	0.607000													7	81	---	---	---	---	0	0	0.003080	0	0
STAM2	10254	broad.mit.edu	37	2	153003678	153003678	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr2:153003678G>C	uc002tyc.3	-	5	795	c.445C>G	c.(445-447)CAG>GAG	p.Q149E	STAM2_uc010foa.1_Missense_Mutation_p.Q149E|STAM2_uc002tyd.2_Missense_Mutation_p.Q149E	NM_005843	NP_005834	O75886	STAM2_HUMAN	signal transducing adaptor molecule 2	149					cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.22)		TCTCTCACCTGAGAACCTGCT	0.363000													8	122	---	---	---	---	0	0	0.008291	0	0
FERMT1	55612	broad.mit.edu	37	20	6068514	6068514	+	Silent	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr20:6068514G>A	uc002wmr.2	-	11	2070	c.1281C>T	c.(1279-1281)CCC>CCT	p.P427P	FERMT1_uc002wmq.2_5'UTR|FERMT1_uc010gbt.2_Silent_p.P170P|FERMT1_uc002wms.2_Silent_p.P427P	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	427	PH.|FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						CATTTACATCGGGCACAACTT	0.383000													26	100	---	---	---	---	0	0	0.006320	0	0
ANKRD5	63926	broad.mit.edu	37	20	10025162	10025162	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr20:10025162C>G	uc002wno.2	+	5	1060	c.667C>G	c.(667-669)CAT>GAT	p.H223D	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.H223D|ANKRD5_uc010gbz.2_Missense_Mutation_p.H34D	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	223	ANK 3.						calcium ion binding			ovary(1)|breast(1)	2						TCACGCTGCTCATTTTGCTGC	0.368000													14	140	---	---	---	---	0	0	0.008871	0	0
EEF1A2	1917	broad.mit.edu	37	20	62121972	62121972	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr20:62121972C>T	uc002yfd.1	-	5	990	c.889G>A	c.(889-891)GAG>AAG	p.E297K	EEF1A2_uc002yfe.1_Missense_Mutation_p.E297K|EEF1A2_uc010gkg.1_Missense_Mutation_p.E297K	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	297						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			CTCAGAGCCTCGTGGTGCATC	0.627000													23	91	---	---	---	---	0	0	0.003330	0	0
EIF4ENIF1	56478	broad.mit.edu	37	22	31851280	31851280	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr22:31851280G>C	uc003akz.1	-	9	1285	c.1121C>G	c.(1120-1122)TCT>TGT	p.S374C	EIF4ENIF1_uc003akx.1_Missense_Mutation_p.S53C|EIF4ENIF1_uc003aky.1_Missense_Mutation_p.S53C|EIF4ENIF1_uc003ala.1_Missense_Mutation_p.S374C|EIF4ENIF1_uc003alb.1_Missense_Mutation_p.S211C	NM_019843	NP_062817	Q9NRA8	4ET_HUMAN	eukaryotic translation initiation factor 4E	374						nucleus	protein binding|protein transporter activity			ovary(1)	1						CTGTCCAGGAGAGAGGATGGC	0.373000													6	46	---	---	---	---	0	0	0.001984	0	0
SBF1	6305	broad.mit.edu	37	22	50894771	50894771	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr22:50894771G>C	uc003blh.2	-	31	4335	c.4140C>G	c.(4138-4140)TTC>TTG	p.F1380L	SBF1_uc003ble.2_5'Flank|SBF1_uc003blf.2_5'Flank|SBF1_uc011arx.1_Missense_Mutation_p.F1018L	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1354	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCCGTGCCTCGAATACCTCAA	0.617000													5	43	---	---	---	---	0	0	0.000602	0	0
C3orf58	205428	broad.mit.edu	37	3	143691563	143691563	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr3:143691563C>G	uc003evo.2	+	1	924	c.389C>G	c.(388-390)ACC>AGC	p.T130S	C3orf58_uc011bnl.1_5'Flank	NM_173552	NP_775823	Q8NDZ4	CC058_HUMAN	hypothetical protein LOC205428 isoform a	130						COPI vesicle coat|extracellular region				ovary(1)	1						AAGCGGGCCACCGGCCGGCCC	0.766000													3	11	---	---	---	---	0	0	0.004672	0	0
DVL3	1857	broad.mit.edu	37	3	183882940	183882940	+	Silent	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr3:183882940G>A	uc003fms.2	+	6	779	c.639G>A	c.(637-639)CTG>CTA	p.L213L	DVL3_uc011bqw.1_Silent_p.L213L|DVL3_uc003fmt.2_5'UTR|DVL3_uc003fmu.2_Silent_p.L45L	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	213					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CCTCACGCCTGATGAGAAGAC	0.642000													5	59	---	---	---	---	0	0	0.001168	0	0
TBC1D9	23158	broad.mit.edu	37	4	141543797	141543797	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr4:141543797G>C	uc010ioj.2	-	21	3625	c.3353C>G	c.(3352-3354)GCC>GGC	p.A1118G		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1118						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GCTGTCGGGGGCCAGGCTGGC	0.657000													12	41	---	---	---	---	0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	5	33162388	33162388	+	RNA	SNP	A	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr5:33162388A>C	uc003jhx.2	+	1		c.123A>C								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		CCAGCTGCCAACACCAAGATT	0.597000													5	28	---	---	---	---	0	0	0.001168	0	0
GFRA3	2676	broad.mit.edu	37	5	137595283	137595283	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr5:137595283C>G	uc003lcn.2	-	3	575	c.435G>C	c.(433-435)TGG>TGC	p.W145C	GFRA3_uc003lco.2_Intron	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	145					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GATTCATTTTCCAGGGTTTGC	0.557000													14	74	---	---	---	---	0	0	0.004990	0	0
HIVEP1	3096	broad.mit.edu	37	6	12161971	12161971	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr6:12161971G>A	uc003nac.2	+	8	6966	c.6787G>A	c.(6787-6789)GCA>ACA	p.A2263T	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2263					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CCTGAGCACAGCACAGTCTGA	0.552000													3	70	---	---	---	---	0	0	0.004672	0	0
CUL9	23113	broad.mit.edu	37	6	43173160	43173160	+	Nonsense_Mutation	SNP	C	T	T	rs148718257	byFrequency	TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr6:43173160C>T	uc003ouk.2	+	24	4867	c.4792C>T	c.(4792-4794)CAG>TAG	p.Q1598*	CUL9_uc003oul.2_Nonsense_Mutation_p.Q1598*|CUL9_uc010jyk.2_Nonsense_Mutation_p.Q750*	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1598					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						GCACTTCTATCAGTGAGTGCA	0.517000													14	141	---	---	---	---	0	0	0.007413	0	0
STK31	56164	broad.mit.edu	37	7	23775294	23775294	+	Silent	SNP	A	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr7:23775294A>T	uc003sws.3	+	7	688	c.621A>T	c.(619-621)GGA>GGT	p.G207G	STK31_uc003swt.3_Silent_p.G184G|STK31_uc011jze.1_Silent_p.G207G|STK31_uc010kuq.2_Silent_p.G184G	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	207							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTAAGAAAGGATTTGCAGAGA	0.413000													27	71	---	---	---	---	0	0	0.005443	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				10	57	---	---	---	---	0	0	0.008291	0	0
SGK223	157285	broad.mit.edu	37	8	8185788	8185788	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr8:8185788G>A	uc003wsh.3	-	4	2504	c.2504C>T	c.(2503-2505)TCC>TTC	p.S835F		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	835							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGGCTTGGGGGAGCCTTGGGT	0.607000													35	132	---	---	---	---	0	0	0.003755	0	0
PRKDC	5591	broad.mit.edu	37	8	48798637	48798638	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr8:48798637_48798638GC>AA	uc003xqi.2	-	37	4700_4701	c.4643_4644GC>TT	c.(4642-4644)GGC>GTT	p.G1548V	PRKDC_uc003xqj.2_Missense_Mutation_p.G1548V|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1548					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GGATGACGCTGCCCTGTGAGCT	0.495000								NHEJ					14	41	---	---	---	---	0	0	0.004672	0	0
TYRP1	7306	broad.mit.edu	37	9	12695656	12695656	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr9:12695656C>T	uc003zkv.3	+	3	705	c.527C>T	c.(526-528)ACG>ATG	p.T176M		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	176	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		GATGGCAACACGCCACAATTT	0.448000									Oculocutaneous_Albinism				24	79	---	---	---	---	0	0	0.002780	0	0
DOLK	22845	broad.mit.edu	37	9	131709562	131709562	+	Silent	SNP	A	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr9:131709562A>G	uc004bwr.2	-	1	451	c.21T>C	c.(19-21)TCT>TCC	p.S7S	NUP188_uc004bws.1_5'Flank|NUP188_uc004bwq.1_Intron	NM_014908	NP_055723	Q9UPQ8	DOLK_HUMAN	dolichol kinase	7	Lumenal (Potential).				dolichyl diphosphate biosynthetic process|dolichyl monophosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane|membrane fraction	dolichol kinase activity				0						CCGGGGCCGGAGATGGGCACT	0.667000													11	27	---	---	---	---	0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	MT	13243	13243	+	RNA	SNP	G	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chrM:13243G>C	uc004cox.3	+	1		c.907G>C			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		AAAAAATCGTAGCCTTCTCCA	0.453000													576	27	---	---	---	---	0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	MT	14868	14868	+	Silent	SNP	T	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chrM:14868T>C	uc004coy.2	+	1	108	c.33T>C	c.(31-33)CCT>CCC	p.P11P	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		TGGCGCCTGCCTGATCCTCCA	0.493000													580	35	---	---	---	---	0	0	0.003610	0	0
MTHFR	4524	broad.mit.edu	37	1	11854415	11854415	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr1:11854415delT	uc001atc.1	-	8	1531	c.1347delA	c.(1345-1347)AAAfs	p.K449fs	MTHFR_uc001atb.1_Frame_Shift_Del_p.K472fs	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	449					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	CATCACTCACTTTGTGACCAT	0.587													8	117	---	---	---	---					
RPS6KA1	6195	broad.mit.edu	37	1	26885311	26885311	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr1:26885311delC	uc001bmr.1	+	14	1261	c.1098delC	c.(1096-1098)ATCfs	p.I366fs	RPS6KA1_uc010ofe.1_Frame_Shift_Del_p.I274fs|RPS6KA1_uc010off.1_Frame_Shift_Del_p.I350fs|RPS6KA1_uc001bms.1_Frame_Shift_Del_p.I375fs|RPS6KA1_uc009vsl.1_Frame_Shift_Del_p.I209fs	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	366	AGC-kinase C-terminal.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		CCCCAGGCATCCCCCCCAGCG	0.672													7	144	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	94871899	94871900	+	IGR	INS	-	G	G			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr1:94871899_94871900insG								ARHGAP29 (131275 upstream) : ABCD3 (12033 downstream)																							TTGTTTTGTTTTTTTTTTTTTT	0.193													5	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	8495201	8495201	+	IGR	DEL	G	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:8495201delG								GATA3 (378039 upstream) : None (None downstream)																							CCTTTTTTTTGTTTCCTCCTC	0.428													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	39143272	39143272	+	IGR	DEL	A	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:39143272delA								LOC399744 (402192 upstream) : None (None downstream)																							aatggattttattcaaataga	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42357918	42357918	+	IGR	DEL	T	-	-	rs79279953		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:42357918delT								None (None upstream) : LOC441666 (469397 downstream)																							tgtccattcgtgttgattcct	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42391470	42391470	+	IGR	DEL	T	-	-	rs28839468		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:42391470delT								None (None upstream) : LOC441666 (435845 downstream)																							tcaaacggaatcaaacggaat	0.000													7	1142	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42394388	42394397	+	IGR	DEL	TCAAACGGAG	-	-	rs74200664		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:42394388_42394397delTCAAACGGAG								None (None upstream) : LOC441666 (432918 downstream)																							ggaatcaacatcaaacggagtcaaacggaa	0.038													7	95	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42614713	42614714	+	IGR	INS	-	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:42614713_42614714insC								None (None upstream) : LOC441666 (212601 downstream)																							atattattcagccttaaacatg	0.000													2	4	---	---	---	---					
ANXA8	653145	broad.mit.edu	37	10	47012115	47012116	+	RNA	DEL	GT	-	-	rs12774400		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr10:47012115_47012116delGT	uc001jed.3	-	4		c.1441_1442delAC						P13928	ANXA8_HUMAN	Homo sapiens cDNA FLJ58071 complete cds, highly similar to Annexin A8.						blood coagulation		calcium ion binding|calcium-dependent phospholipid binding			central_nervous_system(3)	3						atgtgtgtgagtgtgtgtgtgt	0.391													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	20238003	20238005	+	IGR	DEL	AAC	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:20238003_20238005delAAC								DBX1 (56133 upstream) : HTATIP2 (147226 downstream)																							tgccatgttaaacaacaacaaca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	49893326	49893329	+	IGR	DEL	TACT	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:49893326_49893329delTACT								LOC440040 (61359 upstream) : OR4C13 (80646 downstream)																							ATGAGGAAAATACTTACACATGTG	0.382													28	138	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	124366845	124366845	+	IGR	DEL	T	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr11:124366845delT								OR8B8 (55864 upstream) : OR8B12 (45775 downstream)																							gcctggccTATTTTACTTTAA	0.124													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	131962110	131962111	+	IGR	INS	-	ATA	ATA	rs141746341		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr12:131962110_131962111insATA								LOC116437 (264635 upstream) : SFRS8 (233524 downstream)																							tggtaatggtggtgatgatggt	0.079													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	19742940	19742940	+	IGR	DEL	G	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr13:19742940delG								DKFZp686A1627 (50517 upstream) : TUBA3C (4980 downstream)																							agctgggtgtgggggtgcagc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	23154909	23154909	+	IGR	DEL	A	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr14:23154909delA								ABHD4 (73652 upstream) : OXA1L (80822 downstream)																							TCTTCTTGGGAAAAAAAAAAA	0.264													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	71787420	71787421	+	IGR	INS	-	C	C	rs140256891	by1000genomes	TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr14:71787420_71787421insC								PCNX (205321 upstream) : SNORD56B (77633 downstream)																							CACCTCCTCATCCCCCCCCCGG	0.703													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	1136181	1136182	+	IGR	DEL	TG	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:1136181_1136182delTG								SSTR5 (6039 upstream) : C1QTNF8 (2044 downstream)																							TGGTGGTGGTTGTGTGTGTGTG	0.124													2	4	---	---	---	---					
TIGD7	91151	broad.mit.edu	37	16	3349586	3349587	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:3349586_3349587insC	uc002cus.2	-	1	1814_1815	c.1028_1029insG	c.(1027-1029)AGAfs	p.R343fs	ZNF263_uc002cur.2_3'UTR	NM_033208	NP_149985	Q6NT04	TIGD7_HUMAN	tigger transposable element derived 7	343	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						GTTGCTTCCATCTATACAGCCG	0.257													9	72	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	21393228	21393230	+	IGR	DEL	TTT	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:21393228_21393230delTTT								NCRNA00169 (63316 upstream) : NPIPL3 (20221 downstream)																							TGGGAGGttgttttttttttttt	0.256													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32549821	32549822	+	IGR	INS	-	TG	TG	rs145785960		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:32549821_32549822insTG								HERC2P4 (385947 upstream) : TP53TG3B (135019 downstream)																							tttggaaacactgtctgtccat	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33944572	33944572	+	IGR	DEL	T	-	-	rs111472633		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:33944572delT								None (None upstream) : MIR1826 (20936 downstream)																							atgattaagcttactgaagat	0.030													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33958660	33958661	+	IGR	DEL	TC	-	-	rs62027944		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:33958660_33958661delTC								None (None upstream) : MIR1826 (6847 downstream)																							tctgtctttgtctctctctctc	0.054													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33972958	33972958	+	IGR	DEL	A	-	-	rs146319188		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:33972958delA								MIR1826 (7366 upstream) : UBE2MP1 (430844 downstream)																							aaacagtcctattgtagaatc	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	47081196	47081197	+	IGR	DEL	AG	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr16:47081196_47081197delAG								DNAJA2 (73571 upstream) : NETO2 (34245 downstream)																							GAAATAGAGCAGAGAGAGAGAA	0.411													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21223391	21223391	+	IGR	DEL	C	-	-	rs67148773		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr17:21223391delC								MAP2K3 (4842 upstream) : KCNJ12 (56308 downstream)																							GAAATTCTTTCCTTGTCTGCC	0.552													4	4	---	---	---	---					
FLT3LG	2323	broad.mit.edu	37	19	49982166	49982166	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr19:49982166delC	uc010yau.1	+	6	433	c.343delC	c.(343-345)CCCfs	p.P115fs	FLT3LG_uc002pnv.2_Frame_Shift_Del_p.P33fs|FLT3LG_uc002pnw.2_Frame_Shift_Del_p.P33fs|FLT3LG_uc002pnu.2_Frame_Shift_Del_p.P115fs|FLT3LG_uc002pnx.2_Frame_Shift_Del_p.P115fs|FLT3LG_uc010yav.1_Frame_Shift_Del_p.P33fs	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	115	Extracellular (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTGCTCCCAGCCCCCCCCCAG	0.687													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	132773799	132773799	+	IGR	DEL	A	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr2:132773799delA								C2orf27B (214565 upstream) : NCRNA00164 (131365 downstream)																							aacatgagggaaatattctga	0.000													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133021900	133021900	+	IGR	DEL	C	-	-	rs75477623	by1000genomes	TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr2:133021900delC								NCRNA00164 (6358 upstream) : GPR39 (152247 downstream)																							ATAGTGCTAGCTTCTGCTGAC	0.318													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	26204484	26204485	+	IGR	INS	-	T	T	rs145826095		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr20:26204484_26204485insT								MIR663 (15570 upstream) : None (None downstream)																							AAGGTGCCAGGTTTTTTTTTTA	0.342													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	26206917	26206917	+	IGR	DEL	A	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr20:26206917delA								MIR663 (18003 upstream) : None (None downstream)																							TTCAGCTGTCAAAAGAATTAC	0.323													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	29608472	29608472	+	IGR	DEL	G	-	-	rs113600748		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr20:29608472delG								None (None upstream) : FRG1B (3407 downstream)																							ttgctattgtgaatagtgctg	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10705685	10705685	+	IGR	DEL	C	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr21:10705685delC								None (None upstream) : TPTE (201058 downstream)																							cacaaaaaaactagacagaag	0.000													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10715466	10715466	+	IGR	DEL	A	-	-	rs145593257		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr21:10715466delA								None (None upstream) : TPTE (191277 downstream)																							tgcagatcctaaaaaaagact	0.000													12	15	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	14353155	14353155	+	IGR	DEL	A	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr21:14353155delA								None (None upstream) : C21orf99 (57332 downstream)																							tgcacacctcacaaagaagtt	0.000													9	15	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	14362019	14362020	+	IGR	INS	-	C	C			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr21:14362019_14362020insC								None (None upstream) : C21orf99 (48467 downstream)																							gtgtttccaaactggtcaatca	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	18662229	18662229	+	IGR	DEL	C	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr21:18662229delC								C21orf34 (680135 upstream) : CXADR (223101 downstream)																							attgccaacaccccaccacag	0.070													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	180044222	180044222	+	IGR	DEL	T	-	-	rs77900723		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr3:180044222delT								PEX5L (289705 upstream) : TTC14 (275696 downstream)																							CAGCATACCATTTTTTTTTAA	0.348													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	16767	16768	+	IGR	INS	-	T	T	rs141189818		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr4:16767_16768insT								None (None upstream) : ZNF595 (36459 downstream)																							actctgtctcctttgttcggtg	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	31572297	31572298	+	IGR	DEL	TC	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr6:31572297_31572298delTC								NCR3 (11535 upstream) : AIF1 (10696 downstream)																							tctccgtctttctctctctctg	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	47242652	47242652	+	IGR	DEL	A	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr7:47242652delA								None (None upstream) : TNS3 (72101 downstream)																							GTGATTTAACAATTACATAAT	0.289													2	4	---	---	---	---					
ANGPT2	285	broad.mit.edu	37	8	6378718	6378721	+	Frame_Shift_Del	DEL	AGTC	-	-	rs78729465	byFrequency	TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr8:6378718_6378721delAGTC	uc003wqj.3	-	4	1106_1109	c.777_780delGACT	c.(775-780)CTGACTfs	p.L259fs	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Frame_Shift_Del_p.L259fs|ANGPT2_uc010lri.2_Frame_Shift_Del_p.L207fs|ANGPT2_uc003wql.3_Frame_Shift_Del_p.L259fs	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	259_260					angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		TGGACATCATAGTCAGTAAGTTAT	0.338													12	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	143094451	143094451	+	IGR	DEL	C	-	-	rs113650348		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr8:143094451delC								MIR1302-7 (226777 upstream) : NCRNA00051 (185266 downstream)																							accatcagcacccccatcatt	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68418170	68418171	+	IGR	INS	-	AA	AA	rs113647845		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr9:68418170_68418171insAA								FAM27B (623981 upstream) : MIR1299 (584068 downstream)																							GTATTAAATGTAAAAAAAAAAG	0.262													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68429586	68429587	+	IGR	INS	-	A	A	rs147846105		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chr9:68429586_68429587insA								FAM27B (635397 upstream) : MIR1299 (572652 downstream)																							tcttgggggagaaaaaaaaaaG	0.178													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	118207449	118207451	+	IGR	DEL	GGA	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chrX:118207449_118207451delGGA								LONRF3 (55502 upstream) : KIAA1210 (5148 downstream)																							TGGAGATGGTggaggaggaggag	0.468													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	58973298	58973307	+	IGR	DEL	CAATTCCATT	-	-			TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chrY:58973298_58973307delCAATTCCATT								None (None upstream) : None (None downstream)																							ccattccatccaattccattccattggatt	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	58997118	58997119	+	IGR	DEL	CT	-	-	rs144028708		TCGA-DJ-A13L-01A-11D-A21Z-08	TCGA-DJ-A13L-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1924d200-6929-4eef-8a7f-317f8fbab915	d2657b4b-d086-43dd-a2f5-0bd9c7d4e4ba	g.chrY:58997118_58997119delCT								None (None upstream) : None (None downstream)																							tgtgacataactctgcactgat	0.000													7	6	---	---	---	---					
