Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KCNT2	343450	broad.mit.edu	37	1	196577366	196577366	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr1:196577366T>C	uc001gtd.1	-	1	134	c.74A>G	c.(73-75)CAA>CGA	p.Q25R	KCNT2_uc001gte.1_Missense_Mutation_p.Q25R|KCNT2_uc001gtf.1_Missense_Mutation_p.Q25R|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.Q25R|KCNT2_uc009wyv.1_Missense_Mutation_p.Q25R	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	25	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTGCCATCCTTGGTCCCCTAG	0.512000													3	148	---	---	---	---	0	0	0.150653	0	0
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	C	C	rs121913233		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr11:533874T>C	uc001lpv.2	-	3	370	c.182A>G	c.(181-183)CAG>CGG	p.Q61R	HRAS_uc010qvw.1_Missense_Mutation_p.Q61R|HRAS_uc010qvx.1_Missense_Mutation_p.Q61R|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(93)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	GTACTCCTCCTGGCCGGCGGT	0.597000	Q61L(KNS62_LUNG)|Q61L(NCIH1915_LUNG)|Q61L(KYSE30_OESOPHAGUS)	6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			62	79	---	---	---	---	0	0	0.870114	0	0
MALAT1	378938	broad.mit.edu	37	11	65273305	65273305	+	RNA	SNP	C	G	G			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr11:65273305C>G	uc010roh.1	+	1		c.8073C>G			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						ATAACATGTTCAAGAACTGTA	0.388000													53	55	---	---	---	---	0	0	0.870114	0	0
COL4A1	1282	broad.mit.edu	37	13	110830543	110830543	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr13:110830543C>T	uc001vqw.3	-	32	2616	c.2494G>A	c.(2494-2496)GGA>AGA	p.G832R	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	832	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCAGGGAATCCGGGGAAACCC	0.517000													6	155	---	---	---	---	0	0	0.217242	0	0
SLC5A2	6524	broad.mit.edu	37	16	31499763	31499763	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr16:31499763T>G	uc002ecf.3	+	9	1100	c.1081T>G	c.(1081-1083)TGC>GGC	p.C361G	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	361	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						GGAGGTGGGCTGCTCCAACAT	0.711000													12	5	---	---	---	---	0	0	0.411799	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													2	10	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	17	19349506	19349506	+	RNA	SNP	T	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr17:19349506T>A	uc002gvw.2	-	1		c.673A>T								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		GTAGCAGTCATCGATACCAGC	0.597000													7	16	---	---	---	---	0	0	0.387290	0	0
ENGASE	64772	broad.mit.edu	37	17	77073871	77073871	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr17:77073871G>A	uc002jwv.2	+	3	349	c.341G>A	c.(340-342)CGC>CAC	p.R114H	ENGASE_uc002jwu.1_Missense_Mutation_p.R114H|ENGASE_uc010wtz.1_5'UTR|ENGASE_uc002jww.2_5'Flank	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	114						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CTGGCGTGTCGCCAGCCCCCT	0.582000													27	46	---	---	---	---	0	0	0.667858	0	0
ZNF626	199777	broad.mit.edu	37	19	20807184	20807184	+	Missense_Mutation	SNP	T	C	C	rs71332197		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr19:20807184T>C	uc002npb.1	-	4	1649	c.1499A>G	c.(1498-1500)GAG>GGG	p.E500G	ZNF626_uc002npc.1_Missense_Mutation_p.E424G	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	500	C2H2-type 12; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TATGATTCTCTCATGTGTAGT	0.398000													3	117	---	---	---	---	0	0	0.115264	0	0
WDR62	284403	broad.mit.edu	37	19	36558892	36558892	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr19:36558892G>T	uc002odc.2	+	7	953	c.862G>T	c.(862-864)GAG>TAG	p.E288*	WDR62_uc002odd.2_Nonsense_Mutation_p.E288*|WDR62_uc002odb.2_Nonsense_Mutation_p.E288*	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	288					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GAGGGTGCTGGAGAAGTGGAT	0.577000													7	39	---	---	---	---	5.18039e-06	5.38761e-06	0.278610	1	0
KIR2DS4	3809	broad.mit.edu	37	19	55354367	55354367	+	Missense_Mutation	SNP	A	G	G	rs1130508		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr19:55354367A>G	uc002qhm.1	+	6	755	c.709A>G	c.(709-711)AAA>GAA	p.K237E	KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Intron|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	237	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		ACCAAGCTCCAAAACCGGTGA	0.507000													4	135	---	---	---	---	0	0	0.150653	0	0
PCIF1	63935	broad.mit.edu	37	20	44574405	44574405	+	Silent	SNP	G	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr20:44574405G>A	uc002xqs.2	+	12	1538	c.1224G>A	c.(1222-1224)CGG>CGA	p.R408R	PCIF1_uc002xqt.2_5'UTR|PCIF1_uc002xqu.2_5'Flank	NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	408						nucleus				skin(1)	1						ACCCAGTCCGGCTGGCTGTGT	0.617000													3	101	---	---	---	---	0	0	0.115264	0	0
ANP32C	23520	broad.mit.edu	37	4	165118489	165118489	+	Silent	SNP	G	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr4:165118489G>A	uc011cjk.1	-	1	375	c.375C>T	c.(373-375)AAC>AAT	p.N125N	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	125	LRR 4.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		CTCCGTAGTCGTTCAGGTTGG	0.458000													66	117	---	---	---	---	0	0	0.870114	0	0
TBX20	57057	broad.mit.edu	37	7	35280519	35280519	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr7:35280519G>A	uc011kas.1	-	5	796	c.785C>T	c.(784-786)ACG>ATG	p.T262M		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	262	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						AGTGACTGCCGTAAAAACTGT	0.403000													28	42	---	---	---	---	0	0	0.740014	0	0
ZNHIT1	10467	broad.mit.edu	37	7	100865924	100865924	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr7:100865924G>A	uc003uye.2	+	2	554	c.62G>A	c.(61-63)CGG>CAG	p.R21Q	ZNHIT1_uc003uyf.2_RNA	NM_006349	NP_006340	O43257	ZNHI1_HUMAN	zinc finger, HIT domain containing 1	21							metal ion binding|protein binding			large_intestine(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					GTGCTGGACCGGGCTGCCCGG	0.667000													3	97	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	9	68414225	68414225	+	RNA	SNP	C	T	T	rs36153972		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr9:68414225C>T	uc004aex.2	+	1		c.780C>T								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		GAGGGTGACACCCACCAGGGG	0.378000													3	3	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	1	222641941	222641942	+	IGR	INS	-	C	C			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr1:222641941_222641942insC								DUSP10 (726480 upstream) : HHIPL2 (53660 downstream)																							GTCCCTCAGTGCCTGCGCAAGG	0.545													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	6690338	6690338	+	IGR	DEL	A	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr10:6690338delA								PRKCQ (68100 upstream) : SFMBT2 (513911 downstream)																							GGGTTTGGGGAAAAGGGAAAG	0.398													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	90028075	90028075	+	IGR	DEL	G	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr11:90028075delG								CHORDC1 (71543 upstream) : MIR1261 (574214 downstream)																							ggagtgcagtggctgatctca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	10392081	10392082	+	IGR	INS	-	TTA	TTA	rs143361134		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr12:10392081_10392082insTTA								GABARAPL1 (16359 upstream) : KLRD1 (64968 downstream)																							tccttccttccttcttccttcc	0.045													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	7629377	7629384	+	IGR	DEL	AAGGAAGG	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr2:7629377_7629384delAAGGAAGG								RNF144A (445070 upstream) : LOC339788 (433174 downstream)																							aggaaggagaaaggaaggaaggaaggaa	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	215593261	215593262	+	IGR	INS	-	T	T	rs33960630		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr2:215593261_215593262insT								VWC2L (152608 upstream) : BARD1 (13 downstream)																							TGGCATTAGACTTTTTTTTTTT	0.292													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	220549300	220549300	+	IGR	DEL	T	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr2:220549300delT								SLC4A3 (42599 upstream) : None (None downstream)																							TAATTGTCACTTTTTTTTTTT	0.388													7	21	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551272	42551272	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr21:42551272delC	uc002yyz.2	-	1	5895	c.284delG	c.(283-285)GGAfs	p.G95fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	95											0		Prostate(19;2.29e-06)				gtgagggtatccagggtgagt	0.030													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44756755	44756755	+	IGR	DEL	A	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr21:44756755delA								CRYAA (163842 upstream) : SIK1 (77643 downstream)																							caccatcaccaccaccatcac	0.000													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	32677110	32677111	+	IGR	INS	-	G	G	rs148064913	by1000genomes	TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr3:32677110_32677111insG								DYNC1LI1 (64760 upstream) : CNOT10 (49587 downstream)																							CCAGGACGCGAGAAAAAAAAAA	0.292													4	5	---	---	---	---					
HGFAC	3083	broad.mit.edu	37	4	3443798	3443800	+	In_Frame_Del	DEL	CTG	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr4:3443798_3443800delCTG	uc003ghc.2	+	1	73_75	c.70_72delCTG	c.(70-72)CTGdel	p.L29del	HGFAC_uc010icw.2_In_Frame_Del_p.L29del	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	29					proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CCTCCTCCTCCTGCTGCTGCTGC	0.714													7	37	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	12637717	12637717	+	IGR	DEL	T	-	-	rs142332040		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr4:12637717delT								None (None upstream) : HSP90AB2P (697320 downstream)																							ATAGGCTAGCTTTTTTTTTTT	0.209													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	6571881	6571888	+	IGR	DEL	GAAGGAAG	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr5:6571881_6571888delGAAGGAAG								UBE2QL1 (79176 upstream) : LOC255167 (10399 downstream)																							agggaggagagaaggaaggaaggaagga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	27179719	27179720	+	IGR	INS	-	A	A			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr6:27179719_27179720insA								HIST1H2AH (64374 upstream) : PRSS16 (35788 downstream)																							ACTTCCTGTCcaaaaaaaaaag	0.391													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	134714448	134714448	+	IGR	DEL	G	-	-			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr6:134714448delG								SGK1 (75252 upstream) : ALDH8A1 (524081 downstream)																							GGTGATGTCAGGACTTGCAGG	0.567													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	155028499	155028499	+	IGR	DEL	A	-	-	rs147940473		TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr6:155028499delA								CNKSR3 (196746 upstream) : RBM16 (26013 downstream)																							gactccatctaaaaaaaaaaa	0.169													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	79646029	79646030	+	IGR	INS	-	TTCC	TTCC			TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr9:79646029_79646030insTTCC								FOXB2 (10160 upstream) : VPS13A (146331 downstream)																							AGCCtccttctttccttccttc	0.178													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	99258675	99258676	+	IGR	INS	-	ACC	ACC	rs142356622	by1000genomes	TCGA-DJ-A13M-01A-11D-A10S-08	TCGA-DJ-A13M-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f90e2ec-b98e-463d-bf42-c4ec3ad0dc12	f91253d1-45d5-43b4-8cc7-de0ffa145b46	g.chr9:99258675_99258676insACC								HABP4 (5058 upstream) : CDC14B (3721 downstream)																							GCGCTGTACTTaccaccaccac	0.515													3	6	---	---	---	---					
