Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BRDT	676	broad.mit.edu	37	1	92430277	92430277	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr1:92430277G>C	uc001dok.3	+	3	635	c.286G>C	c.(286-288)GAA>CAA	p.E96Q	BRDT_uc001dol.3_Missense_Mutation_p.E96Q|BRDT_uc010osz.1_Missense_Mutation_p.E96Q|BRDT_uc009wdf.2_Missense_Mutation_p.E23Q|BRDT_uc010ota.1_Intron|BRDT_uc010otb.1_Intron|BRDT_uc001dom.3_Missense_Mutation_p.E96Q	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	96	Bromo 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		AGAATGTATAGAAGACTTCAA	0.289000													4	77	---	---	---	---	0	0	0.009096	0	0
FNDC7	163479	broad.mit.edu	37	1	109268557	109268557	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr1:109268557T>G	uc001dvx.2	+	6	1042	c.1042T>G	c.(1042-1044)TTT>GTT	p.F348V	FNDC7_uc010ova.1_Missense_Mutation_p.F115V	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	349	Fibronectin type-III 4.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		CTTCACTTATTTTATTAGTGT	0.398000													9	198	---	---	---	---	0	0	0.047766	0	0
HKDC1	80201	broad.mit.edu	37	10	71010063	71010063	+	Missense_Mutation	SNP	G	A	A	rs148336562	by1000genomes	TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr10:71010063G>A	uc001jpf.3	+	11	1721	c.1588G>A	c.(1588-1590)GCC>ACC	p.A530T	HKDC1_uc010qje.1_Missense_Mutation_p.A393T	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	530					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						AAAGTTTCTCGCCCTGGATCT	0.547000													10	277	---	---	---	---	0	0	0.058154	0	0
GRID1	2894	broad.mit.edu	37	10	87407024	87407024	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr10:87407024G>A	uc001kdl.1	-	13	2229	c.2128C>T	c.(2128-2130)CGG>TGG	p.R710W	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.R281W|uc001kdm.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	710	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CTGATGGTCCGCCAGAGTTCA	0.572000										Multiple Myeloma(13;0.14)			6	434	---	---	---	---	0	0	0.021553	0	0
TRPC4	7223	broad.mit.edu	37	13	38357319	38357319	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr13:38357319G>T	uc001uws.2	-	2	387	c.152C>A	c.(151-153)TCC>TAC	p.S51Y	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.S51Y|TRPC4_uc010tey.1_Missense_Mutation_p.S51Y|TRPC4_uc010abw.2_Missense_Mutation_p.S51Y|TRPC4_uc010abx.2_Missense_Mutation_p.S51Y|TRPC4_uc010aby.2_Missense_Mutation_p.S51Y	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	51	Cytoplasmic (Potential).|ANK 1.				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TTCCTCTAGGGATTTCTTGAC	0.249000													6	229	---	---	---	---	0.00307968	0.0035764	0.038147	1	0
JUB	84962	broad.mit.edu	37	14	23445885	23445885	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr14:23445885T>C	uc001whz.2	-	3	1521	c.1145A>G	c.(1144-1146)AAT>AGT	p.N382S	JUB_uc001why.2_5'UTR	NM_032876	NP_116265	Q96IF1	JUB_HUMAN	ajuba isoform 1	382	LIM zinc-binding 1.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding				0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0122)		CACAGAGCCATTGACACTGTA	0.512000													3	139	---	---	---	---	0	0	0.115264	0	0
ALKBH1	8846	broad.mit.edu	37	14	78142152	78142152	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr14:78142152A>G	uc001xuc.1	-	5	596	c.587T>C	c.(586-588)CTG>CCG	p.L196P	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	196					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		GAGGAAACCCAGGTCAGAAGG	0.448000													3	91	---	---	---	---	0	0	0.115264	0	0
MYO1E	4643	broad.mit.edu	37	15	59510196	59510196	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr15:59510196C>T	uc002aga.2	-	10	1373	c.1001G>A	c.(1000-1002)GGC>GAC	p.G334D		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	334	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TTCGGATTTGCCTCCCCACTT	0.527000													8	194	---	---	---	---	0	0	0.058154	0	0
ACSM2A	123876	broad.mit.edu	37	16	20491997	20491997	+	Missense_Mutation	SNP	G	A	A	rs141811117	by1000genomes	TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr16:20491997G>A	uc010bwe.2	+	12	1623	c.1384G>A	c.(1384-1386)GCA>ACA	p.A462T	ACSM2A_uc010vax.1_Missense_Mutation_p.A383T|ACSM2A_uc002dhf.3_Missense_Mutation_p.A462T|ACSM2A_uc002dhg.3_Missense_Mutation_p.A462T|ACSM2A_uc010vay.1_Missense_Mutation_p.A383T|ACSM2A_uc002dhh.3_Missense_Mutation_p.A92T	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	462					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TATGGGACGGGCAAATGATAT	0.498000													4	160	---	---	---	---	0	0	0.009096	0	0
SRCAP	10847	broad.mit.edu	37	16	30715587	30715587	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr16:30715587G>A	uc002dze.1	+	4	642	c.257G>A	c.(256-258)GGC>GAC	p.G86D	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_5'Flank	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	86					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GCTAACAAGGGCCCGAAGTGG	0.537000													9	203	---	---	---	---	0	0	0.069234	0	0
C16orf86	388284	broad.mit.edu	37	16	67701334	67701334	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr16:67701334C>G	uc002ety.2	+	2	395	c.238C>G	c.(238-240)CCC>GCC	p.P80A	C16orf48_uc002etv.1_5'Flank|C16orf48_uc002etw.1_5'Flank|C16orf48_uc010cem.1_5'Flank|C16orf86_uc002etx.1_5'UTR|C16orf86_uc002etz.2_RNA	NM_001012984	NP_001013002	Q6ZW13	CP086_HUMAN	hypothetical protein LOC388284	80											0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGAGGAGCGGCCCAAGCCGCA	0.667000													3	19	---	---	---	---	0	0	0.014758	0	0
NFIC	4782	broad.mit.edu	37	19	3452590	3452590	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr19:3452590C>T	uc010xhi.1	+	8	1257	c.1195C>T	c.(1195-1197)CAT>TAT	p.H399Y	NFIC_uc002lxo.2_Missense_Mutation_p.H390Y|NFIC_uc010xhh.1_Missense_Mutation_p.H390Y|NFIC_uc002lxp.2_Missense_Mutation_p.H399Y|NFIC_uc010xhj.1_Missense_Mutation_p.H399Y	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	399					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		CTACCCACCTCATCTCAACCC	0.657000													6	253	---	---	---	---	0	0	0.029380	0	0
EPOR	2057	broad.mit.edu	37	19	11489201	11489201	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr19:11489201G>A	uc002mrj.1	-	8	1122	c.986C>T	c.(985-987)GCT>GTT	p.A329V	EPOR_uc002mrh.2_5'UTR|EPOR_uc002mri.2_Missense_Mutation_p.A156V|EPOR_uc002mrk.1_Missense_Mutation_p.A156V|EPOR_uc002mrl.1_RNA|EPOR_uc010xlx.1_RNA|EPOR_uc010xly.1_Missense_Mutation_p.A156V	NM_000121	NP_000112	P19235	EPOR_HUMAN	erythropoietin receptor precursor	329	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	erythropoietin receptor activity|identical protein binding			ovary(1)	1					Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	TTCCAGGGAAGCAGGTGGGTC	0.627000													27	40	---	---	---	---	0	0	0.125774	0	0
ZNF83	55769	broad.mit.edu	37	19	53116715	53116715	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr19:53116715G>A	uc002pzu.3	-	2	2347	c.1103C>T	c.(1102-1104)GCC>GTC	p.A368V	ZNF83_uc002pzv.3_Missense_Mutation_p.A368V|ZNF83_uc010eps.2_Missense_Mutation_p.A340V|ZNF83_uc010ept.2_Missense_Mutation_p.A368V|ZNF83_uc010epu.2_Missense_Mutation_p.A368V|ZNF83_uc010epv.2_Missense_Mutation_p.A368V|ZNF83_uc010epw.2_Missense_Mutation_p.A368V|ZNF83_uc010epx.2_Missense_Mutation_p.A340V|ZNF83_uc010epy.2_Missense_Mutation_p.A368V|ZNF83_uc010epz.2_Missense_Mutation_p.A340V	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	368						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TTTCTCACCGGCATGAATTAT	0.403000													4	182	---	---	---	---	0	0	0.009096	0	0
NLRP5	126206	broad.mit.edu	37	19	56561809	56561809	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr19:56561809G>A	uc002qmj.2	+	12	2983	c.2983G>A	c.(2983-2985)GCT>ACT	p.A995T	NLRP5_uc002qmi.2_Missense_Mutation_p.A976T	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	995	LRR 9.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCTGGACACGGCTGGCTGTGG	0.547000													3	48	---	---	---	---	0	0	0.115264	0	0
FAM110C	642273	broad.mit.edu	37	2	45588	45589	+	Missense_Mutation	DNP	GC	CA	CA			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr2:45588_45589GC>CA	uc010yim.1	-	1	797_798	c.797_798GC>TG	c.(796-798)GGC>GTG	p.G266V		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	266						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		CCTCGTCGTCGCCGCCGCTGTG	0.663000													3	7	---	---	---	---	0	0	0.115264	0	0
BPIL1	80341	broad.mit.edu	37	20	31600702	31600702	+	Silent	SNP	C	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr20:31600702C>T	uc002wyj.2	+	4	491	c.297C>T	c.(295-297)TTC>TTT	p.F99F		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	99						extracellular region	lipid binding	p.F99L(1)		skin(2)|large_intestine(1)|ovary(1)	4						ATTTTACTTTCAAGGTCTTTC	0.557000													6	178	---	---	---	---	0	0	0.021553	0	0
FAM83D	81610	broad.mit.edu	37	20	37576551	37576551	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr20:37576551C>G	uc002xjg.2	+	3	815	c.774C>G	c.(772-774)ATC>ATG	p.I258M		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	228					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				CAGGAAATATCTACTATGCAA	0.428000													5	161	---	---	---	---	0	0	0.014758	0	0
MUC4	4585	broad.mit.edu	37	3	195505813	195505814	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr3:195505813_195505814TC>CT	uc011bto.1	-	3	12713_12714	c.12253_12254GA>AG	c.(12253-12255)GAC>AGC	p.D4085S	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGAGGAAGTGTCGGTGACAGGA	0.594000													2	2	---	---	---	---	0	0	0.115264	0	0
AMZ1	155185	broad.mit.edu	37	7	2740235	2740235	+	Silent	SNP	G	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr7:2740235G>A	uc003smr.1	+	2	511	c.150G>A	c.(148-150)CCG>CCA	p.P50P	AMZ1_uc003sms.1_Silent_p.P50P|AMZ1_uc011jwa.1_5'Flank	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	50							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		CCTACAACCCGCAGAGGACGC	0.662000													7	253	---	---	---	---	0	0	0.058154	0	0
RASA4P	401331	broad.mit.edu	37	7	44080367	44080367	+	5'Flank	SNP	A	G	G			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr7:44080367A>G	uc011kbk.1	-						RASA4P_uc003tji.2_5'Flank|RASA4P_uc010kxx.2_5'Flank|FLJ35390_uc003tjk.2_RNA|FLJ35390_uc003tjl.3_RNA|FLJ35390_uc011kbl.1_RNA	NM_006989	NP_008920			RAS p21 protein activator 4 isoform 1												0						GCAGCCCGGAACACCTGCGTG	0.721000													3	7	---	---	---	---	0	0	0.009096	0	0
RASA4P	401331	broad.mit.edu	37	7	44080405	44080405	+	5'Flank	SNP	A	G	G			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr7:44080405A>G	uc011kbk.1	-						RASA4P_uc003tji.2_5'Flank|RASA4P_uc010kxx.2_5'Flank|FLJ35390_uc003tjk.2_RNA|FLJ35390_uc003tjl.3_RNA|FLJ35390_uc011kbl.1_RNA	NM_006989	NP_008920			RAS p21 protein activator 4 isoform 1												0						AGAGGAGGTCACGGTCAGCGC	0.672000													3	4	---	---	---	---	0	0	0.115264	0	0
SRRT	51593	broad.mit.edu	37	7	100482086	100482086	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr7:100482086G>C	uc003uwy.2	+	8	1123	c.855G>C	c.(853-855)AAG>AAC	p.K285N	SRRT_uc010lhl.1_Missense_Mutation_p.K285N|SRRT_uc003uxa.2_Missense_Mutation_p.K285N|SRRT_uc003uwz.2_Missense_Mutation_p.K285N	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	285	Glu-rich.				cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						AGCCCAGCAAGAAAGAAGAAG	0.592000													3	32	---	---	---	---	0	0	0.115264	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				34	54	---	---	---	---	0	0	0.069456	0	0
MGAM	8972	broad.mit.edu	37	7	141759688	141759688	+	Silent	SNP	T	C	C			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr7:141759688T>C	uc003vwy.2	+	33	4035	c.3981T>C	c.(3979-3981)CCT>CCC	p.P1327P		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1327	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGACACAGCCTTATCCTGCCT	0.463000													3	19	---	---	---	---	0	0	0.115264	0	0
OR13F1	138805	broad.mit.edu	37	9	107267379	107267379	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr9:107267379C>T	uc011lvm.1	+	1	836	c.836C>T	c.(835-837)GCC>GTC	p.A279V		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TTGGTGTATGCCGGACAAACC	0.418000													4	93	---	---	---	---	0	0	0.009096	0	0
FAM21C	253725	broad.mit.edu	37	10	46221019	46221022	+	5'Flank	DEL	AAAC	-	-	rs113880906		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr10:46221019_46221022delAAAC	uc001jcu.2	+						FAM21C_uc001jcs.1_5'Flank|FAM21C_uc001jct.2_5'Flank|FAM21C_uc010qfi.1_5'Flank	NM_015262	NP_056077	A8K5W5	A8K5W5_HUMAN	hypothetical protein LOC253725											ovary(1)	1						tccgtctcaaaaacaaacaaacaa	0.127													4	7	---	---	---	---					
C10orf71	118461	broad.mit.edu	37	10	50534969	50534970	+	In_Frame_Ins	INS	-	ACACACACACAC	ACACACACACAC	rs66701434		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr10:50534969_50534970insACACACACACAC	uc010qgp.1	+	4	2407_2408	c.2068_2069insACACACACACAC	c.(2068-2070)AAC>AACACACACACACAC	p.702_703insTHTH		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	Error:Variant_position_missing_in_Q711Q0_after_alignment											0						CAAAACAAGCAacacacacaca	0.406													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	99823423	99823430	+	IGR	DEL	TCTTTCTT	-	-			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr10:99823423_99823430delTCTTTCTT								CRTAC1 (32838 upstream) : C10orf28 (70951 downstream)																							cctccctccctctttctttctttctttc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	61263464	61263487	+	IGR	DEL	TTCCTTCCTTCCTTCCTTCCTTCC	-	-	rs72204013	by1000genomes	TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr12:61263464_61263487delTTCCTTCCTTCCTTCCTTCCTTCC								None (None upstream) : FAM19A2 (838556 downstream)																							TTGATtttctttccttccttccttccttccttccttccttcctt	0.138													3	5	---	---	---	---					
TBC1D29	26083	broad.mit.edu	37	17	28885450	28885451	+	5'Flank	INS	-	T	T			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr17:28885450_28885451insT	uc002hfh.2	+						uc002hfg.1_5'Flank|TBC1D29_uc002hfi.2_5'Flank	NM_015594	NP_056409	Q9UFV1	TBC29_HUMAN	TBC1 domain family, member 29							intracellular	Rab GTPase activator activity				0		Myeloproliferative disorder(56;0.0255)				TGGCATAAACCTCCAGCAAGGG	0.540													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	231033635	231033636	+	IGR	INS	-	AA	AA	rs3856527		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr2:231033635_231033636insAA								FBXO36 (85619 upstream) : SP110 (9 downstream)																							aagtattaatttttttTTTTTT	0.163													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9766012	9766013	+	RNA	INS	-	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr21:9766012_9766013insA	uc011abu.1	+	8		c.509_510insA								Homo sapiens, clone IMAGE:4720764, mRNA.																		ACAACTATCAGAAAATGTATGT	0.262													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	11144773	11144774	+	IGR	DEL	TG	-	-	rs72428671		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr21:11144773_11144774delTG								BAGE (45836 upstream) : None (None downstream)																							TGGAtgtgtctgtgtgtgtgtg	0.371													2	4	---	---	---	---					
FBXL2	25827	broad.mit.edu	37	3	33317558	33317558	+	5'Flank	DEL	T	-	-	rs34582904		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr3:33317558delT	uc003cfp.2	+						FBXL2_uc011axm.1_5'Flank|FBXL2_uc011axn.1_5'Flank|FBXL2_uc011axo.1_5'Flank|FBXL2_uc011axp.1_5'Flank|FBXL2_uc011axq.1_5'Flank|FBXL2_uc011axr.1_5'Flank	NM_012157	NP_036289	Q9UKC9	FBXL2_HUMAN	F-box and leucine-rich repeat protein 2						interspecies interaction between organisms|proteolysis	cytoplasm|membrane	protein binding|ubiquitin-protein ligase activity			large_intestine(1)	1						TAtttctttcttttttttttt	0.055													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	72742023	72742039	+	IGR	DEL	TTCCTTCCTTGCCTTCG	-	-	rs77638707		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr4:72742023_72742039delTTCCTTCCTTGCCTTCG								GC (72265 upstream) : NPFFR2 (155482 downstream)																							cttccttgttttccttccttgccttcgttccttcctt	0.000													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	118075111	118075112	+	IGR	INS	-	A	A			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr4:118075111_118075112insA								TRAM1L1 (68375 upstream) : NDST3 (879661 downstream)																							aggaaggaaggaaagaaggaag	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	25261990	25261990	+	5'Flank	DEL	A	-	-	rs150117437		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr6:25261990delA	uc003nex.3	-											Homo sapiens cDNA clone IMAGE:5297808.																		TGGACtatttaaaaaaaaaaa	0.179													3	6	---	---	---	---					
NCR2	9436	broad.mit.edu	37	6	41301865	41301868	+	5'Flank	DEL	ACAC	-	-	rs71745323		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr6:41301865_41301868delACAC	uc003oqh.2	+						NCR2_uc003oqi.2_5'Flank|NCR2_uc003oqj.2_5'Flank	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2						cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					ACAGTTGCTGacacacacacacac	0.475													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	9732116	9732117	+	IGR	INS	-	GAAGGAAG	GAAGGAAG	rs145244640	by1000genomes	TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr8:9732116_9732117insGAAGGAAG								TNKS (92261 upstream) : LOC157627 (25457 downstream)																							aaaaaaaGTGAGaaggaaggaa	0.015													2	4	---	---	---	---					
C9orf7	11094	broad.mit.edu	37	9	136333684	136333684	+	Splice_Site	DEL	G	-	-			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chr9:136333684delG	uc011mdg.1	+	5	531	c.429_splice	c.e5-1	p.K143_splice	C9orf7_uc004cec.2_Splice_Site_p.K101_splice|C9orf7_uc011mdh.1_Splice_Site_p.G185_splice|C9orf7_uc011mdi.1_Splice_Site_p.G143_splice|C9orf7_uc010nan.2_Splice_Site	NM_017586	NP_060056	Q9UGQ2	FLOWR_HUMAN	hypothetical protein LOC11094 isoform a							integral to membrane					0				GBM - Glioblastoma multiforme(294;5.7e-39)|all cancers(34;1.83e-23)|OV - Ovarian serous cystadenocarcinoma(145;8.94e-08)|Epithelial(140;1.01e-06)		TCTCTCCCCAGGGGCGATGCG	0.667													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	80866920	80866921	+	IGR	DEL	GT	-	-			TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chrX:80866920_80866921delGT								SH3BGRL (312878 upstream) : None (None downstream)																							ttcatgatgcgtgtgtgtgtgt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	106866801	106866802	+	IGR	INS	-	TC	TC	rs75158112		TCGA-DJ-A13X-01A-11D-A10S-08	TCGA-DJ-A13X-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	95a61a26-f8f9-49b6-8964-4fb915243cb9	1612cb7e-0dfa-41f7-90f8-1ce300ff100a	g.chrX:106866801_106866802insTC								CXorf41 (379329 upstream) : PRPS1 (4852 downstream)																							ttttctttctttttctttcttt	0.000													3	4	---	---	---	---					
