Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ICMT	23463	broad.mit.edu	37	1	6291980	6291980	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr1:6291980G>T	uc001amk.2	-	4	727	c.654C>A	c.(652-654)TAC>TAA	p.Y218*	ICMT_uc001aml.2_Nonsense_Mutation_p.Y122*	NM_012405	NP_036537	O60725	ICMT_HUMAN	isoprenylcysteine carboxyl methyltransferase	218	Helical; (Potential).				protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane|membrane fraction	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;2.4e-22)|all_lung(118;2.65e-08)|Lung NSC(185;6.45e-07)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000688)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;5.52e-38)|GBM - Glioblastoma multiforme(13;6.51e-32)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;7.08e-08)|COAD - Colon adenocarcinoma(227;8.35e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		CAATACTCCAGTAAAACCACC	0.308000													14	60	---	---	---	---	5.01169e-05	0.00012156	0.004990	1	0
EPRS	2058	broad.mit.edu	37	1	220198558	220198558	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr1:220198558C>G	uc001hly.1	-	7	936	c.666G>C	c.(664-666)CAG>CAC	p.Q222H	EPRS_uc010puf.1_5'UTR|EPRS_uc001hlz.1_Missense_Mutation_p.Q222H|EPRS_uc009xdt.1_Missense_Mutation_p.Q23H	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	222	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	CCTGGTAGTGCTGGTTCAGAA	0.318000													3	45	---	---	---	---	0	0	0.000248	0	0
RYR2	6262	broad.mit.edu	37	1	237758830	237758830	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr1:237758830C>A	uc001hyl.1	+	34	4589	c.4469C>A	c.(4468-4470)GCG>GAG	p.A1490E		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1490	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATGGTATGTGCGGGTGAGAGC	0.463000													8	30	---	---	---	---	1.12685e-05	2.79263e-05	0.004482	1	0
OR14I1	401994	broad.mit.edu	37	1	248845498	248845498	+	Silent	SNP	C	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr1:248845498C>T	uc001ieu.1	-	1	108	c.108G>A	c.(106-108)GTG>GTA	p.V36V		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCCCACCAGCACTGCCAGAT	0.498000													9	41	---	---	---	---	0	0	0.004990	0	0
C10orf28	27291	broad.mit.edu	37	10	99968514	99968514	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr10:99968514G>T	uc001kow.3	+	4	938	c.643G>T	c.(643-645)GAG>TAG	p.E215*	C10orf28_uc001kox.3_Nonsense_Mutation_p.E215*|C10orf28_uc001koy.3_Nonsense_Mutation_p.E215*|C10orf28_uc009xvx.2_Nonsense_Mutation_p.E215*|C10orf28_uc009xvy.2_Intron|C10orf28_uc001koz.3_Intron	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	215							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		CAAGGTTTTGGAGATACTATA	0.358000													23	22	---	---	---	---	5.35356e-11	1.38706e-10	0.002780	1	0
APBB1	322	broad.mit.edu	37	11	6422860	6422860	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr11:6422860G>A	uc001mdb.1	-	9	1547	c.1447C>T	c.(1447-1449)CGC>TGC	p.R483C	APBB1_uc001mcz.1_Missense_Mutation_p.R102C|APBB1_uc001mdd.3_Missense_Mutation_p.R261C|APBB1_uc001mda.2_Missense_Mutation_p.R8C|APBB1_uc001mdc.1_Missense_Mutation_p.R481C|APBB1_uc010rab.1_Missense_Mutation_p.R8C|APBB1_uc010rac.1_RNA|APBB1_uc010rad.1_Missense_Mutation_p.R200C	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	483	PID 1.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		GCCTCACAGCGAAACACGTGG	0.577000													7	84	---	---	---	---	0	0	0.000443	0	0
EED	8726	broad.mit.edu	37	11	85977149	85977149	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr11:85977149A>G	uc001pbp.2	+	8	1208	c.751A>G	c.(751-753)ATA>GTA	p.I251V	EED_uc010rtm.1_Missense_Mutation_p.I251V|EED_uc001pbq.2_Missense_Mutation_p.I251V|EED_uc001pbr.2_Missense_Mutation_p.I251V|EED_uc001pbs.2_Intron|EED_uc010rtn.1_RNA	NM_003797	NP_003788	O75530	EED_HUMAN	embryonic ectoderm development isoform a	251	Interaction with EZH2 (By similarity).|WD 4.|Required for interaction with the matrix protein MA of HIV-1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|identical protein binding			skin(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;7.24e-07)|all_hematologic(158;0.00092)				GGGTGAAAAAATAATGTCCTG	0.284000													5	86	---	---	---	---	0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr12:92018T>C	uc010sdi.1	-	2	320	c.292A>G	c.(292-294)AGT>GGT	p.S98G	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		GACTCCACACTCTCCTGGGTT	0.592000													4	8	---	---	---	---	0	0	0.000248	0	0
ST8SIA1	6489	broad.mit.edu	37	12	22487009	22487009	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr12:22487009T>C	uc001rfo.3	-	1	640	c.158A>G	c.(157-159)AAC>AGC	p.N53S	ST8SIA1_uc009zix.2_5'UTR|uc001rfp.1_Intron	NM_003034	NP_003025	Q92185	SIA8A_HUMAN	alpha-2,8-sialyltransferase 1	53	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(3)	3						CTCTTTCTCGTTGGGCAGCCG	0.662000													4	130	---	---	---	---	0	0	0.001168	0	0
AQP6	363	broad.mit.edu	37	12	50367285	50367285	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr12:50367285G>A	uc001rvr.1	+	1	666	c.329G>A	c.(328-330)GGG>GAG	p.G110E	AQP6_uc001rvp.1_Intron|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	110	Helical; (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						CAGCTGGTGGGGGCCACGGTG	0.677000													7	29	---	---	---	---	0	0	0.003080	0	0
FSCB	84075	broad.mit.edu	37	14	44973729	44973729	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr14:44973729C>T	uc001wvn.2	-	1	2771	c.2462G>A	c.(2461-2463)CGT>CAT	p.R821H		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	821						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TTCAGGAGGACGTTGTTTTAA	0.388000													4	52	---	---	---	---	0	0	0.000602	0	0
CASC4	113201	broad.mit.edu	37	15	44581275	44581275	+	Silent	SNP	C	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr15:44581275C>T	uc001zto.1	+	1	347	c.48C>T	c.(46-48)CTC>CTT	p.L16L	CASC4_uc001ztp.2_Silent_p.L16L|CASC4_uc001ztq.2_Silent_p.L16L|CASC4_uc010bdu.1_RNA	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	16	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		TGCCCTCTCTCGTGCTGGTGG	0.677000													42	58	---	---	---	---	0	0	0.003214	0	0
CES7	221223	broad.mit.edu	37	16	55886942	55886942	+	Splice_Site	SNP	T	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr16:55886942T>A	uc002eip.2	-	10	1275	c.1126_splice	c.e10-1	p.H376_splice	CES7_uc002eio.2_Splice_Site_p.H376_splice|CES7_uc002eiq.2_Splice_Site_p.H137_splice|CES7_uc002eir.2_Splice_Site_p.H270_splice	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1							extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		CGGGATGTGCTGTAAAAATAT	0.363000													5	78	---	---	---	---	0	0	0.001168	0	0
AP1G1	164	broad.mit.edu	37	16	71768593	71768593	+	Silent	SNP	G	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr16:71768593G>C	uc010cgg.2	-	22	2600	c.2286C>G	c.(2284-2286)CTC>CTG	p.L762L	AP1G1_uc002fba.2_Silent_p.L765L|AP1G1_uc002fbb.2_Silent_p.L785L|AP1G1_uc002faz.2_Silent_p.L179L	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	762	GAE.				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				TAGGAGACAAGAGCTGCAGCT	0.463000													15	316	---	---	---	---	0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	17	39296167	39296167	+	RNA	SNP	A	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr17:39296167A>G	uc010cxk.1	-	1		c.537T>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		GGCAGGTGGAAATGACACAGG	0.478000													3	15	---	---	---	---	0	0	0.004672	0	0
OTOP2	92736	broad.mit.edu	37	17	72926756	72926756	+	Silent	SNP	C	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr17:72926756C>A	uc010wrp.1	+	7	1115	c.1026C>A	c.(1024-1026)GTC>GTA	p.V342V		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	342	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					CCACCTTGGTCAGCCTGAGCG	0.612000													15	55	---	---	---	---	1.5739e-10	3.98721e-10	0.004007	1	0
FOXK2	3607	broad.mit.edu	37	17	80544992	80544992	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr17:80544992C>T	uc002kfn.2	+	8	1801	c.1630C>T	c.(1630-1632)CGG>TGG	p.R544W	FOXK2_uc002kfm.1_Missense_Mutation_p.R544W|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	544					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			CACTGCCAGCCGGATCATTCA	0.488000													43	82	---	---	---	---	0	0	0.003610	0	0
GNAL	2774	broad.mit.edu	37	18	11752905	11752905	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr18:11752905G>A	uc010dkz.2	+	3	445	c.199G>A	c.(199-201)GTC>ATC	p.V67I	GNAL_uc002kqc.2_Missense_Mutation_p.V144I|GNAL_uc002kqd.2_Missense_Mutation_p.V67I	NM_001142339	NP_001135811	P38405	GNAL_HUMAN	guanine nucleotide binding protein (G protein),	67					activation of adenylate cyclase activity by dopamine receptor signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception of smell|synaptic transmission	heterotrimeric G-protein complex	adenylate cyclase activity|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						GATCCTGCACGTCAATGGGTT	0.468000													14	22	---	---	---	---	0	0	0.002450	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594528	41594528	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr19:41594528C>G	uc002opt.2	+	1	161	c.152C>G	c.(151-153)ACA>AGA	p.T51R		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	51					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CAGCTGAACACAGAGCAGATG	0.602000													11	121	---	---	---	---	0	0	0.000673	0	0
IGFL4	444882	broad.mit.edu	37	19	46543657	46543657	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr19:46543657A>G	uc002pdy.1	-	3	142	c.88T>C	c.(88-90)TGC>CGC	p.C30R		NM_001002923	NP_001002923	Q6B9Z1	IGFL4_HUMAN	IGF-like family member 4 precursor	30						extracellular region					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		GCTGGCTGGCATAGCCACAGT	0.602000													4	91	---	---	---	---	0	0	0.000602	0	0
DDX11L2	84771	broad.mit.edu	37	2	114357557	114357557	+	Nonstop_Mutation	SNP	A	G	G	rs115341812	by1000genomes	TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr2:114357557A>G	uc010yxx.1	-	3	709	c.382T>C	c.(382-384)TAG>CAG	p.*128Q						SubName: Full=DEAD/H box polypeptide 11 like 2;												0						GCCTACTTCTAGTGAAACTGG	0.567000													4	21	---	---	---	---	0	0	0.000248	0	0
WDR33	55339	broad.mit.edu	37	2	128477839	128477839	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr2:128477839G>C	uc002tpg.1	-	16	1943	c.1760C>G	c.(1759-1761)CCT>CGT	p.P587R		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	587					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TCCTGGAAAAGGCTGGGGTCC	0.493000													5	115	---	---	---	---	0	0	0.001168	0	0
DEFB118	117285	broad.mit.edu	37	20	29960791	29960791	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr20:29960791C>T	uc002wvr.2	+	2	216	c.190C>T	c.(190-192)CGA>TGA	p.R64*		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	64					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			AGACCACAGGCGAGTTCCTGC	0.438000													9	110	---	---	---	---	0	0	0.000673	0	0
LAMA5	3911	broad.mit.edu	37	20	60887079	60887079	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr20:60887079G>C	uc002ycq.2	-	70	9599	c.9532C>G	c.(9532-9534)CAG>GAG	p.Q3178E		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3178	Laminin G-like 3.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACACGGCCCTGCTGCAGGGAC	0.637000													20	51	---	---	---	---	0	0	0.001216	0	0
MIR133A2	406923	broad.mit.edu	37	20	61162163	61162163	+	RNA	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr20:61162163G>A	hsa-mir-133a-2|MI0000451	+			c.45G>A			C20orf166_uc011aaj.1_Intron|C20orf166_uc011aal.1_RNA																	0						GAACCAAATCGACTGTCCAAT	0.597000													4	19	---	---	---	---	0	0	0.000602	0	0
C21orf99	149992	broad.mit.edu	37	21	14439185	14439185	+	RNA	SNP	C	A	A	rs112098339		TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr21:14439185C>A	uc002yja.3	+	10		c.2703C>A				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TGACTTTAAACCAAGAAGAAG	0.269000													5	19	---	---	---	---	0.00116845	0.00271842	0.001168	1	0
ZNF385D	79750	broad.mit.edu	37	3	21478657	21478657	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr3:21478657T>C	uc003cce.2	-	5	886	c.478A>G	c.(478-480)ACT>GCT	p.T160A	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	160	Thr-rich.					nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						ATTTCCACAGTTGTCGTCGTT	0.428000													14	65	---	---	---	---	0	0	0.002450	0	0
TNNC1	7134	broad.mit.edu	37	3	52485804	52485804	+	Silent	SNP	C	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr3:52485804C>G	uc003deb.2	-	4	299	c.273G>C	c.(271-273)GGG>GGC	p.G91G		NM_003280	NP_003271	P63316	TNNC1_HUMAN	troponin C, slow	91					cardiac muscle contraction|muscle filament sliding|regulation of ATPase activity|regulation of muscle filament sliding speed|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin filament binding|calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|troponin I binding|troponin T binding				0				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00175)|KIRC - Kidney renal clear cell carcinoma(197;0.00198)|OV - Ovarian serous cystadenocarcinoma(275;0.0525)	Bepridil(DB01244)|Dihydroxyaluminium(DB01375)|Levosimendan(DB00922)	CCTCAGATTTCCCTTTGCTGT	0.567000													4	98	---	---	---	---	0	0	0.000248	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906055	164906055	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr3:164906055C>T	uc003fej.3	-	2	3008	c.2564G>A	c.(2563-2565)GGA>GAA	p.G855E	SLITRK3_uc003fek.2_Missense_Mutation_p.G855E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	855	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TGCCAAGTCTCCCCCAGTTCC	0.567000										HNSCC(40;0.11)			48	69	---	---	---	---	0	0	0.003610	0	0
NSUN7	79730	broad.mit.edu	37	4	40776343	40776343	+	Missense_Mutation	SNP	A	G	G	rs148671827		TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr4:40776343A>G	uc003gvj.3	+	5	1045	c.550A>G	c.(550-552)ATT>GTT	p.I184V	NSUN7_uc003gvh.2_Missense_Mutation_p.I184V|NSUN7_uc003gvi.3_Missense_Mutation_p.I184V	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						TGCCCTTTCAATTTACCACAT	0.373000													4	82	---	---	---	---	0	0	0.000248	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147051354	147051354	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr5:147051354G>A	uc003loq.1	-	2	398	c.16C>T	c.(16-18)CGA>TGA	p.R6*	JAKMIP2_uc011dbx.1_Intron|JAKMIP2_uc003lor.1_Nonsense_Mutation_p.R6*|JAKMIP2_uc010jgo.1_Nonsense_Mutation_p.R6*	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	6						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTTATTTCGCCCTTTCTTG	0.458000													11	47	---	---	---	---	0	0	0.000978	0	0
MCM3	4172	broad.mit.edu	37	6	52129524	52129524	+	Silent	SNP	G	A	A	rs111523955		TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr6:52129524G>A	uc003pan.1	-	17	2399	c.2289C>T	c.(2287-2289)ATC>ATT	p.I763I	MCM3_uc011dwu.1_Silent_p.I717I	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	763					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					GATTCATGCCGATTGACTGCG	0.527000													70	128	---	---	---	---	0	0	0.003610	0	0
LAMA4	3910	broad.mit.edu	37	6	112508668	112508668	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr6:112508668G>C	uc003pvu.2	-	8	1259	c.950C>G	c.(949-951)ACC>AGC	p.T317S	LAMA4_uc003pvv.2_Missense_Mutation_p.T310S|LAMA4_uc003pvt.2_Missense_Mutation_p.T310S	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	317	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		GAGGTAGATGGTGGCGTTGAT	0.537000													3	83	---	---	---	---	0	0	0.000248	0	0
RINT1	60561	broad.mit.edu	37	7	105190850	105190850	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr7:105190850G>A	uc003vda.1	+	9	1481	c.1250G>A	c.(1249-1251)GGC>GAC	p.G417D	RINT1_uc010ljj.1_5'UTR	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	417	RINT1/TIP20.				cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						AGTGTTCATGGCTATCCTGGC	0.418000													12	242	---	---	---	---	0	0	0.002450	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121668634	121668634	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr7:121668634T>G	uc003vjy.2	+	14	5412	c.5017T>G	c.(5017-5019)TTA>GTA	p.L1673V	PTPRZ1_uc003vjz.2_Missense_Mutation_p.L813V|PTPRZ1_uc011knt.1_Missense_Mutation_p.L263V	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1673	Cytoplasmic (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ACACTTTTACTTAGAGGACAG	0.383000													7	79	---	---	---	---	0	0	0.004482	0	0
FASTK	10922	broad.mit.edu	37	7	150775088	150775088	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr7:150775088C>A	uc003wix.1	-	5	1015	c.917G>T	c.(916-918)CGG>CTG	p.R306L	uc011kvf.1_5'Flank|FASTK_uc003wiw.1_Missense_Mutation_p.R67L|FASTK_uc003wiy.1_Missense_Mutation_p.R165L|FASTK_uc003wiz.1_Missense_Mutation_p.R279L|FASTK_uc003wja.1_3'UTR	NM_006712	NP_006703	Q14296	FASTK_HUMAN	Fas-activated serine/threonine kinase isoform 1	306					apoptosis|induction of apoptosis by extracellular signals|regulation of RNA splicing		ATP binding|Fas-activated serine/threonine kinase activity|protein binding			lung(2)|stomach(2)	4			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.0718)|Lung(243;0.138)		CCCTGCTTCCCGAGCCAGGAT	0.577000													4	181	---	---	---	---	0.00116845	0.00271842	0.001168	1	0
ADCY8	114	broad.mit.edu	37	8	131848585	131848585	+	Silent	SNP	C	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr8:131848585C>A	uc003ytd.3	-	12	2869	c.2613G>T	c.(2611-2613)CTG>CTT	p.L871L	ADCY8_uc010mds.2_Silent_p.L740L	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	871	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCTCAGTGAGCAGGGCATAGA	0.557000										HNSCC(32;0.087)			26	25	---	---	---	---	7.92952e-12	2.10225e-11	0.003954	1	0
Unknown	0	broad.mit.edu	37	9	69067929	69067929	+	Splice_Site	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr9:69067929G>A	uc004afe.1	+	3		c.744_splice	c.e3+1		uc010mnq.1_Splice_Site					Homo sapiens cDNA, FLJ18209.																		TGATATGTTGGTGAGTCAGTT	0.209000													7	15	---	---	---	---	0	0	0.004007	0	0
LCN1	3933	broad.mit.edu	37	9	138413373	138413373	+	Silent	SNP	T	C	C			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr9:138413373T>C	uc004cfz.1	+	1	88	c.30T>C	c.(28-30)CTT>CTC	p.L10L	LCN1_uc004cga.1_Silent_p.L10L	NM_002297	NP_002288	P31025	LCN1_HUMAN	lipocalin 1 precursor	10					proteolysis|response to stimulus|sensory perception of taste	extracellular region	cysteine-type endopeptidase inhibitor activity|transporter activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.54e-08)|Epithelial(140;5.25e-08)|all cancers(34;9.27e-07)|READ - Rectum adenocarcinoma(205;0.155)		CCGTCAGCCTTGGCCTCATTG	0.667000													3	32	---	---	---	---	0	0	0.000248	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130217771	130217771	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chrX:130217771G>A	uc004evz.2	+	4	728	c.383G>A	c.(382-384)CGC>CAC	p.R128H	ARHGAP36_uc004ewa.2_Missense_Mutation_p.R116H|ARHGAP36_uc004ewb.2_Missense_Mutation_p.R97H|ARHGAP36_uc004ewc.2_5'UTR	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	128					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TTTACCCGCCGCAAGCATCTT	0.562000													36	168	---	---	---	---	0	0	0.003610	0	0
TACC2	10579	broad.mit.edu	37	10	123843326	123843327	+	In_Frame_Ins	INS	-	GGATCA	GGATCA			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr10:123843326_123843327insGGATCA	uc001lfv.2	+	4	1671_1672	c.1311_1312insGGATCA	c.(1309-1314)insGGATCA	p.439_440insGS	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_In_Frame_Ins_p.439_440insGS|TACC2_uc010qtv.1_In_Frame_Ins_p.439_440insGS	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	439_440						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TAGAAGAACCTGGATCATCATC	0.545													42	113	---	---	---	---					
MALAT1	378938	broad.mit.edu	37	11	65267849	65267852	+	RNA	DEL	ATTA	-	-			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr11:65267849_65267852delATTA	uc010roh.1	+	1		c.2617_2620delATTA			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GAGGACTAGCATTAATTGACAGCT	0.387													13	41	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	9391908	9391909	+	5'Flank	INS	-	T	T			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr12:9391908_9391909insT	uc001qvm.1	+											Homo sapiens cDNA FLJ44260 fis, clone TLIVE2000979.																		ttttttttttcttttttttttt	0.248													6	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	96991295	96991295	+	IGR	DEL	A	-	-	rs111722607		TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr15:96991295delA								NR2F2 (107805 upstream) : SPATA8 (335384 downstream)																							GACATCATGGAAAAAAAATAT	0.363													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	102313925	102313925	+	5'Flank	DEL	T	-	-			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr15:102313925delT	uc010uto.1	+						uc002cct.1_5'Flank|uc002ccu.2_5'Flank|uc002ccv.1_5'Flank|uc002ccw.2_5'Flank|uc010utp.1_5'Flank|uc002ccx.2_5'Flank|uc002ccz.2_5'Flank					DQ601694																		CTCCTGCAACTTTTGGCGGGC	0.607													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	25289395	25289395	+	IGR	DEL	T	-	-	rs113949263		TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr17:25289395delT								None (None upstream) : WSB1 (331711 downstream)																							TATTTACATCTTTTTTTGTCT	0.433													8	58	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133020743	133020744	+	IGR	INS	-	T	T	rs137914230		TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr2:133020743_133020744insT								NCRNA00164 (5201 upstream) : GPR39 (153403 downstream)																							TTAGATAGCTCTTTATTGTCAT	0.327													4	4	---	---	---	---					
SGK223	157285	broad.mit.edu	37	8	8234868	8234869	+	In_Frame_Ins	INS	-	GCCGCT	GCCGCT	rs150979349	by1000genomes	TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chr8:8234868_8234869insGCCGCT	uc003wsh.3	-	2	1050_1051	c.1050_1051insAGCGGC	c.(1048-1053)insAGCGGC	p.350_351insSG		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	350_351							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGGCTACTGGCGCCGCTGCCGC	0.653													9	15	---	---	---	---					
SLITRK2	84631	broad.mit.edu	37	X	144905417	144905417	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A2Q0-01A-11D-A202-08	TCGA-DJ-A2Q0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	dc53f3d7-7da8-44ad-aee6-b62d4ed382d2	676014d2-8fb4-4ae6-8b7e-9c2585117050	g.chrX:144905417delG	uc004fcd.2	+	5	2464	c.1474delG	c.(1474-1476)GGGfs	p.G492fs	SLITRK2_uc010nsp.2_Frame_Shift_Del_p.G492fs|SLITRK2_uc010nso.2_Frame_Shift_Del_p.G492fs|SLITRK2_uc011mwq.1_Frame_Shift_Del_p.G492fs|SLITRK2_uc011mwr.1_Frame_Shift_Del_p.G492fs|SLITRK2_uc011mws.1_Frame_Shift_Del_p.G492fs|SLITRK2_uc004fcg.2_Frame_Shift_Del_p.G492fs|SLITRK2_uc011mwt.1_Frame_Shift_Del_p.G492fs	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	492	Extracellular (Potential).|LRR 11.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TAATATATTTGGGGGGACGGC	0.453													8	229	---	---	---	---					
