Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SDC3	9672	broad.mit.edu	37	1	31349713	31349713	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr1:31349713C>T	uc001bse.2	-	3	603	c.556G>A	c.(556-558)GCC>ACC	p.A186T	SDC3_uc001bsd.2_Missense_Mutation_p.A128T	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	186	Extracellular (Potential).|Ser/Thr-rich (mucin-like).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGGGGTGGCGGTGGCCACT	0.637000													16	24	---	---	---	---	0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			88	140	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	151991151	151991151	+	RNA	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr1:151991151C>T	uc001ezm.1	+	8		c.2215C>T								Homo sapiens cDNA FLJ43896 fis, clone TESTI4009752.																		GTGGTGTCTGCCAGCCCTTCA	0.488000													3	70	---	---	---	---	0	0	1	0	0
FAM58B	339521	broad.mit.edu	37	1	200183175	200183175	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr1:200183175T>C	uc009wzi.1	+	1	520	c.484T>C	c.(484-486)TGC>CGC	p.C162R		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	162					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CTGGCTGAACTGCCACAGCTG	0.617000													3	94	---	---	---	---	0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1269764	1269764	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr11:1269764G>A	uc009ycr.1	+	50	13364	c.13238G>A	c.(13237-13239)CGC>CAC	p.R4413H	MUC5B_uc001ltb.2_Missense_Mutation_p.R3888H	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3885	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGGACGGCACGCACGCCTCCA	0.652000													4	198	---	---	---	---	0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66191839	66191839	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr11:66191839C>T	uc001ohx.1	+	7	1654	c.1478C>T	c.(1477-1479)TCG>TTG	p.S493L	NPAS4_uc010rpc.1_Missense_Mutation_p.S283L	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	493					transcription, DNA-dependent		DNA binding|signal transducer activity				0						ACTGAAACCTCGGTCAGAAGC	0.577000													16	499	---	---	---	---	0	0	1	0	0
ANKRD13D	338692	broad.mit.edu	37	11	67069034	67069034	+	Missense_Mutation	SNP	G	A	A	rs141392969		TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr11:67069034G>A	uc001okc.1	+	14	1674	c.1163G>A	c.(1162-1164)CGC>CAC	p.R388H	ANKRD13D_uc001okd.1_Missense_Mutation_p.R475H|ANKRD13D_uc001oke.1_Missense_Mutation_p.R388H|ANKRD13D_uc001okg.1_Missense_Mutation_p.R171H|ANKRD13D_uc001okh.1_Missense_Mutation_p.R171H|ANKRD13D_uc001oki.1_Missense_Mutation_p.R125H|SSH3_uc001okj.2_5'Flank|SSH3_uc001okk.2_5'Flank|SSH3_uc001okl.2_5'Flank	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	388										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GGCATGGAGCGCAACGAGCCC	0.662000													3	131	---	---	---	---	0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4873152	4873152	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr12:4873152A>T	uc001qne.1	+	9	1624	c.1532A>T	c.(1531-1533)GAT>GTT	p.D511V		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	511	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GTCTGCTTGGATCAGGGACCC	0.502000													9	109	---	---	---	---	0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57559912	57559912	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr12:57559912G>A	uc001snd.2	+	17	3183	c.2717G>A	c.(2716-2718)CGG>CAG	p.R906Q	LRP1_uc009zph.1_5'Flank|LRP1_uc009zpi.1_5'Flank	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	906	Extracellular (Potential).|LDL-receptor class A 4.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GAGAACAACCGGTGCATCCCC	0.597000													3	118	---	---	---	---	0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72147128	72147128	+	Missense_Mutation	SNP	A	C	C			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr13:72147128A>C	uc010thn.1	-	5	1566	c.1143T>G	c.(1141-1143)TTT>TTG	p.F381L	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	433					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GCATCATCATAAAAGGAAGTT	0.398000													35	31	---	---	---	---	0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65684514	65684514	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr15:65684514G>A	uc002aou.1	-	11	2290	c.2080C>T	c.(2080-2082)CGG>TGG	p.R694W	IGDCC4_uc002aot.1_Missense_Mutation_p.R282W	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	694	Extracellular (Potential).|Fibronectin type-III 3.					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TTCTTGAGCCGGACAGGCCCC	0.627000													3	121	---	---	---	---	0	0	1	0	0
DUS2L	54920	broad.mit.edu	37	16	68100529	68100529	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr16:68100529G>A	uc002evi.2	+	10	693	c.544G>A	c.(544-546)GTT>ATT	p.V182I	DUS2L_uc002evj.2_Missense_Mutation_p.V182I|DUS2L_uc010vkk.1_Missense_Mutation_p.V147I|DUS2L_uc010cez.2_Missense_Mutation_p.V95I	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	182					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		TGCCATCGCAGTTCATGGGAG	0.522000													8	272	---	---	---	---	0	0	1	0	0
CYTSB	92521	broad.mit.edu	37	17	20107857	20107857	+	Silent	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr17:20107857G>A	uc002gwq.2	+	4	640	c.495G>A	c.(493-495)GCG>GCA	p.A165A	CYTSB_uc010cqx.2_Silent_p.A165A|CYTSB_uc002gwr.2_Silent_p.A165A|CYTSB_uc002gws.2_Silent_p.A165A|CYTSB_uc002gwv.2_Silent_p.A84A|CYTSB_uc010vzf.1_Intron|CYTSB_uc002gww.2_5'UTR|CYTSB_uc002gwt.2_Silent_p.A84A|CYTSB_uc002gwu.2_Silent_p.A84A	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	165				AALESQV -> VRLSPKF (in Ref. 1; BAB16440).		nucleus					0						AAAAGGCTGCGCTTGAGTCCC	0.458000													3	101	---	---	---	---	0	0	1	0	0
MPP2	4355	broad.mit.edu	37	17	41960323	41960323	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr17:41960323G>A	uc010wip.1	-	5	593	c.536C>T	c.(535-537)CCT>CTT	p.P179L	MPP2_uc002ien.1_Missense_Mutation_p.P151L|MPP2_uc010wim.1_Missense_Mutation_p.P123L|MPP2_uc002ieo.1_Missense_Mutation_p.P134L|MPP2_uc010win.1_5'UTR|MPP2_uc010wio.1_Missense_Mutation_p.P123L|MPP2_uc010czm.1_Missense_Mutation_p.P117L	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	158					signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		AGCATCGGGAGGTACAGGCTG	0.632000													4	278	---	---	---	---	0	0	1	0	0
ELAVL1	1994	broad.mit.edu	37	19	8028430	8028430	+	Silent	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr19:8028430G>A	uc002mjb.2	-	6	1085	c.918C>T	c.(916-918)AAC>AAT	p.N306N		NM_001419	NP_001410	Q15717	ELAV1_HUMAN	ELAV-like 1	306	RRM 3.				3'-UTR-mediated mRNA stabilization|multicellular organismal development	cytoplasm|nucleoplasm	identical protein binding|mRNA binding|nucleotide binding				0						GGCGGTAGCCGTTCAGGCTGG	0.453000													3	106	---	---	---	---	0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18870826	18870826	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr19:18870826C>T	uc002nkb.3	+	8	762	c.674C>T	c.(673-675)CCG>CTG	p.P225L	CRTC1_uc010ebv.2_Missense_Mutation_p.P241L|CRTC1_uc010ebw.2_Missense_Mutation_p.P90L|CRTC1_uc002nkc.3_Missense_Mutation_p.P90L	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	225					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						AGCATCTTCCCGTCTGCCGAC	0.672000													5	291	---	---	---	---	0	0	1	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580552	40580552	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr19:40580552T>G	uc002omy.2	-	6	2022	c.1797A>C	c.(1795-1797)CAA>CAC	p.Q599H	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.Q599H|ZNF780A_uc010xvh.1_Missense_Mutation_p.Q600H	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	599	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTCGAATAAGTTGCATATGAA	0.403000													4	147	---	---	---	---	0	0	1	0	0
PRMT1	3276	broad.mit.edu	37	19	50180555	50180555	+	Silent	SNP	C	G	G			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr19:50180555C>G	uc010enf.1	+	1	60	c.18C>G	c.(16-18)GCC>GCG	p.A6A	PRMT1_uc002ppc.1_Intron|PRMT1_uc002ppd.2_5'UTR|PRMT1_uc002ppe.2_Silent_p.A6A|PRMT1_uc002ppf.2_RNA|PRMT1_uc002ppg.2_Silent_p.A6A|PRMT1_uc010yba.1_5'Flank	NM_001536	NP_001527	Q8WUW5	Q8WUW5_HUMAN	HMT1 hnRNP methyltransferase-like 2 isoform 1	5						cytoplasm	protein methyltransferase activity			ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00103)|GBM - Glioblastoma multiforme(134;0.012)		CAGCCGAGGCCGCGAACTGCA	0.667000													23	37	---	---	---	---	0	0	1	0	0
PUM2	23369	broad.mit.edu	37	2	20478389	20478389	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr2:20478389G>A	uc002rds.1	-	12	1935	c.1912C>T	c.(1912-1914)CCG>TCG	p.P638S	PUM2_uc002rdq.1_Missense_Mutation_p.P15S|PUM2_uc002rdt.1_Missense_Mutation_p.P638S|PUM2_uc002rdr.2_Intron|PUM2_uc010yjy.1_Intron|PUM2_uc002rdu.1_Missense_Mutation_p.P638S|PUM2_uc010yjz.1_Missense_Mutation_p.P577S	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	638	Ser-rich.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGTGATGGCGGTGGCGTAAGT	0.373000													3	75	---	---	---	---	0	0	1	0	0
BAZ2B	29994	broad.mit.edu	37	2	160240182	160240182	+	Silent	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr2:160240182G>A	uc002uao.2	-	24	4048	c.3696C>T	c.(3694-3696)GAC>GAT	p.D1232D	BAZ2B_uc002uap.2_Silent_p.D1196D	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1232					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						CAATGTTCTTGTCGATTTCAC	0.289000													13	16	---	---	---	---	0	0	1	0	0
XRCC5	7520	broad.mit.edu	37	2	216990723	216990723	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr2:216990723A>G	uc002vfy.2	+	7	907	c.767A>G	c.(766-768)AAT>AGT	p.N256S	XRCC5_uc002vfz.2_Missense_Mutation_p.N142S	NM_021141	NP_066964	P13010	XRCC5_HUMAN	ATP-dependent DNA helicase II	256	Ku.				double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|provirus integration|telomere maintenance|transcription, DNA-dependent	Ku70:Ku80 complex|nonhomologous end joining complex|nuclear telomere cap complex|nucleoplasm	ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|telomeric DNA binding|transcription regulatory region DNA binding			lung(1)|kidney(1)	2		Renal(323;0.0328)		Epithelial(149;9.78e-06)|all cancers(144;0.000632)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.0117)		ATTGGCTCCAATTTGTCTATA	0.388000								Direct_reversal_of_damage|NHEJ					4	111	---	---	---	---	0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16287731	16287731	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr22:16287731G>A	uc010gqp.2	-	1	207	c.155C>T	c.(154-156)TCT>TTT	p.S52F	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	52										skin(1)	1						CTTCATAGCAGAATCGTCGTG	0.612000													41	549	---	---	---	---	0	0	1	0	0
GGT1	2678	broad.mit.edu	37	22	25024063	25024063	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr22:25024063C>T	uc003aan.1	+	14	1839	c.1352C>T	c.(1351-1353)TCG>TTG	p.S451L	GGT1_uc003aas.1_Missense_Mutation_p.S451L|GGT1_uc003aat.1_Missense_Mutation_p.S451L|GGT1_uc003aau.1_Missense_Mutation_p.S451L|GGT1_uc003aav.1_Missense_Mutation_p.S451L|GGT1_uc003aaw.1_Missense_Mutation_p.S451L|GGT1_uc003aax.1_Missense_Mutation_p.S451L|GGT1_uc003aay.1_Missense_Mutation_p.S107L	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	451	Extracellular (Potential).			S->A: Reduces enzyme activity by 99%. Abolishes activity; when associated with A-452.	glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	CAGCCGCTCTCGTCCATGTGC	0.692000													3	127	---	---	---	---	0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133667435	133667435	+	Silent	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr3:133667435G>A	uc003eqa.3	-	8	1324	c.1050C>T	c.(1048-1050)AAC>AAT	p.N350N	SLCO2A1_uc003eqb.3_Silent_p.N274N|SLCO2A1_uc011blv.1_Silent_p.N169N	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	350	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CCAGGAACTTGTTGAGGAAGG	0.587000													6	225	---	---	---	---	0	0	1	0	0
OPA1	4976	broad.mit.edu	37	3	193375008	193375008	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr3:193375008C>T	uc003ftm.2	+	21	2387	c.2153C>T	c.(2152-2154)GCG>GTG	p.A718V	OPA1_uc003ftg.2_Missense_Mutation_p.A773V|OPA1_uc003fth.2_Missense_Mutation_p.A737V|OPA1_uc003fti.2_Missense_Mutation_p.A755V|OPA1_uc003ftj.2_Missense_Mutation_p.A736V|OPA1_uc003ftk.2_Missense_Mutation_p.A719V|OPA1_uc003ftl.2_Missense_Mutation_p.A700V|OPA1_uc003ftn.2_Missense_Mutation_p.A682V	NM_015560	NP_056375	O60313	OPA1_HUMAN	optic atrophy 1 isoform 1	718	Mitochondrial intermembrane (By similarity).				apoptosis|axon transport of mitochondrion|inner mitochondrial membrane organization|mitochondrial fission|mitochondrial fusion|positive regulation of anti-apoptosis|response to stimulus|visual perception	dendrite|integral to membrane|mitochondrial crista|mitochondrial intermembrane space|mitochondrial outer membrane	GTP binding|GTPase activity|magnesium ion binding|protein binding				0	all_cancers(143;9.56e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;9.19e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000162)		AATGACTTTGCGGAGGACAGC	0.353000													3	124	---	---	---	---	0	0	1	0	0
MFSD7	84179	broad.mit.edu	37	4	675823	675823	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr4:675823C>T	uc003gay.2	-	10	1664	c.1607G>A	c.(1606-1608)GGC>GAC	p.G536D	MFSD7_uc003gaw.2_Missense_Mutation_p.G278D|MFSD7_uc003gax.2_Missense_Mutation_p.G535D|MFSD7_uc003gaz.2_Missense_Mutation_p.G417D|MFSD7_uc003gba.2_Missense_Mutation_p.G439D|MFSD7_uc003gbb.1_3'UTR	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	536					transmembrane transport	integral to membrane					0						TTGGACCCTGCCTGCGAGTCT	0.692000													3	27	---	---	---	---	0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3230369	3230369	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr4:3230369A>G	uc011bvq.1	+	59	8027	c.7882A>G	c.(7882-7884)AAC>GAC	p.N2628D		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2626					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GTGGCTGGGGAACAGCATCAC	0.532000													3	60	---	---	---	---	0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23833344	23833345	+	Missense_Mutation	DNP	GC	TG	TG			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr4:23833344_23833345GC>TG	uc003gqs.2	-	3	384_385	c.264_265GC>CA	c.(262-267)TTGCTA>TTCATA	p.88_89LL>FI	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	88_89					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				AGGACTGCTAGCAAGTTTGCCT	0.465000													14	343	---	---	---	---	0	0	1	0	0
GIGYF1	64599	broad.mit.edu	37	7	100284337	100284337	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr7:100284337T>C	uc003uwg.1	-	7	1638	c.629A>G	c.(628-630)GAG>GGG	p.E210G		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	210	Poly-Glu.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CCAGCTGCcctcctcctcctc	0.617000													3	63	---	---	---	---	0	0	1	0	0
VIPR2	7434	broad.mit.edu	37	7	158935229	158935229	+	Silent	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr7:158935229G>A	uc003woh.2	-	2	246	c.60C>T	c.(58-60)AGC>AGT	p.S20S	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	20					cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		CTGGGTGAATGCTGTTCACCT	0.373000													8	123	---	---	---	---	0	0	1	0	0
DERL1	79139	broad.mit.edu	37	8	124033740	124033740	+	Splice_Site	SNP	C	T	T			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr8:124033740C>T	uc003ypl.2	-	6	740	c.454_splice	c.e6-1	p.A152_splice	DERL1_uc003ypm.2_Splice_Site_p.A152_splice|DERL1_uc011lif.1_Splice_Site_p.A52_splice|DERL1_uc003ypn.2_Splice_Site_p.A152_splice	NM_024295	NP_077271	Q9BUN8	DERL1_HUMAN	Der1-like domain family, member 1 isoform a						endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|intracellular transport of viral proteins in host cell|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane	MHC class I protein binding|receptor activity				0	Lung NSC(37;1.06e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AATAGCAGGCCTAGGATGGAA	0.413000													3	142	---	---	---	---	0	0	1	0	0
KIAA1432	57589	broad.mit.edu	37	9	5754856	5754856	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr9:5754856G>A	uc003zji.2	+	14	1474	c.1381G>A	c.(1381-1383)GTG>ATG	p.V461M	KIAA1432_uc003zjh.2_Missense_Mutation_p.V461M|KIAA1432_uc003zjl.3_Missense_Mutation_p.V424M|KIAA1432_uc003zjj.1_Missense_Mutation_p.V3M	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	540						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		AAATATGATCGTGACAGGTGG	0.299000													3	84	---	---	---	---	0	0	1	0	0
CTR9	9646	broad.mit.edu	37	11	10789616	10789620	+	Splice_Site	DEL	TATAG	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr11:10789616_10789620delTATAG	uc001mja.2	+	15	2022	c.1873_splice	c.e15-1	p.E625_splice		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1						histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		CACTTGTTTCTATAGGAAAAGCGTC	0.380													27	59	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	78202278	78202278	+	IGR	DEL	C	-	-	rs71145877		TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr15:78202278delC								LINGO1 (213803 upstream) : LOC645752 (4281 downstream)																							TTGACAGTGGCTCCCCCAGCC	0.577													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33413054	33413054	+	IGR	DEL	T	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr16:33413054delT								SLC6A10P (516591 upstream) : MIR1826 (552454 downstream)																							TTTTACTGTCTTTTTTTTGTT	0.328													2	4	---	---	---	---					
IRX3	79191	broad.mit.edu	37	16	54318498	54318498	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr16:54318498delG	uc002eht.1	-	2	1711	c.1295delC	c.(1294-1296)CCTfs	p.P432fs		NM_024336	NP_077312	P78415	IRX3_HUMAN	iroquois homeobox 3	432	Pro-rich.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGGTGCGGAGGGGCAGAGCC	0.751													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	6361174	6361174	+	IGR	DEL	C	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr5:6361174delC								FLJ33360 (23769 upstream) : MED10 (10866 downstream)																							ctgttctctgcccctgcctgc	0.159													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	170403046	170403046	+	IGR	DEL	G	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr6:170403046delG								C6orf208 (200077 upstream) : LOC154449 (160376 downstream)																							agcatggtgtggggggggacc	0.075													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57659470	57659471	+	IGR	DEL	TA	-	-	rs79867563	by1000genomes	TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr7:57659470_57659471delTA								ZNF716 (126205 upstream) : None (None downstream)																							GCGTTGATCTTACAGTCTGGTG	0.371													3	6	---	---	---	---					
TNPO3	23534	broad.mit.edu	37	7	128610259	128610259	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr7:128610259delG	uc003vol.1	-	20	2915	c.2541delC	c.(2539-2541)CCCfs	p.P847fs	TNPO3_uc010llx.1_Frame_Shift_Del_p.P258fs|TNPO3_uc003vom.1_Frame_Shift_Del_p.P781fs|TNPO3_uc010lly.1_Frame_Shift_Del_p.P881fs|TNPO3_uc010llz.1_Frame_Shift_Del_p.P783fs	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	847					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						GTAGGGTATAGGGGGGGAGGC	0.483													7	434	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	131772762	131772762	+	IGR	DEL	C	-	-	rs80305522	byFrequency	TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr7:131772762delC								PODXL (531386 upstream) : PLXNA4 (35330 downstream)																							AACCTTCCATCCCAGAGTCCC	0.567													6	4	---	---	---	---					
NR4A3	8013	broad.mit.edu	37	9	102590616	102590618	+	In_Frame_Del	DEL	CAC	-	-			TCGA-DJ-A3UP-01A-11D-A22D-08	TCGA-DJ-A3UP-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	43f8d30b-1ca7-40a7-b0ae-e3c275446c14	dde10b76-a9b4-4d88-99ff-40daf388ee30	g.chr9:102590616_102590618delCAC	uc004baf.1	+	3	1021_1023	c.292_294delCAC	c.(292-294)CACdel	p.H108del	NR4A3_uc004bae.2_In_Frame_Del_p.H108del|NR4A3_uc004bag.1_In_Frame_Del_p.H108del|NR4A3_uc004bai.2_In_Frame_Del_p.H119del	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	108	Poly-His.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				ccatcaccatcaccaccaccacc	0.483			T	EWSR1	extraskeletal myxoid chondrosarcoma								10	64	---	---	---	---					
