Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZCCHC17	51538	broad.mit.edu	37	1	31836979	31836979	+	Missense_Mutation	SNP	A	C	C	rs111803813		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr1:31836979A>C	uc001bsp.1	+	8	801	c.665A>C	c.(664-666)GAC>GCC	p.D222A	ZCCHC17_uc001bsq.1_Missense_Mutation_p.D214A|ZCCHC17_uc010ogf.1_Missense_Mutation_p.D224A|ZCCHC17_uc009vtu.1_Missense_Mutation_p.D198A|ZCCHC17_uc001bsr.1_Missense_Mutation_p.D222A|ZCCHC17_uc009vtv.1_Missense_Mutation_p.D198A	NM_016505	NP_057589	Q9NP64	NO40_HUMAN	zinc finger, CCHC domain containing 17	222	Lys-rich.					nucleolus	RNA binding|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)|all_neural(195;0.146)|Medulloblastoma(700;0.151)|Breast(348;0.222)		STAD - Stomach adenocarcinoma(196;0.0215)|READ - Rectum adenocarcinoma(331;0.168)		ACATCAAAAGACAGCAAGGCA	0.358													20	92					0	0	0.000229342	0	0
ADAM30	11085	broad.mit.edu	37	1	120436921	120436921	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr1:120436921C>T	uc001eij.2	-	1	2193	c.2039G>A	c.(2038-2040)GGG>GAG	p.G680E		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	680	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		GGGAATCGCCCCTCTGAGCAG	0.473													27	52					0	0	9.22233e-05	0	0
AIM2	9447	broad.mit.edu	37	1	159033450	159033450	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr1:159033450C>G	uc001ftj.1	-	5	1076	c.831G>C	c.(829-831)AAG>AAC	p.K277N		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	277	HIN-200.				cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					ATATGTTTTTCTTCTTTTCTG	0.398													55	123					0	0	0.000147903	0	0
GLUL	2752	broad.mit.edu	37	1	182356292	182356292	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr1:182356292A>T	uc001gpa.1	-	3	514	c.302T>A	c.(301-303)GTT>GAT	p.V101D	GLUL_uc010pnt.1_5'Flank|GLUL_uc001gpb.1_Missense_Mutation_p.V101D|GLUL_uc001gpc.1_Missense_Mutation_p.V101D|GLUL_uc001gpd.1_Missense_Mutation_p.V101D	NM_001033056	NP_001028228	P15104	GLNA_HUMAN	glutamine synthetase	101					cell proliferation|glutamine biosynthetic process|neurotransmitter uptake	cytosol|Golgi apparatus|mitochondrion	ATP binding|glutamate decarboxylase activity|glutamate-ammonia ligase activity|identical protein binding				0					Asparaginase(DB00023)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)|L-Methionine(DB00134)	GTACTTGAAAACTTCACATAA	0.493													9	78					0	0	2.17888e-05	0	0
PRG4	10216	broad.mit.edu	37	1	186280621	186280622	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr1:186280621_186280622CC>AA	uc001gru.3	+	10	3737_3738	c.3686_3687CC>AA	c.(3685-3687)CCC>CAA	p.P1229Q	PRG4_uc001grt.3_Missense_Mutation_p.P1188Q|PRG4_uc009wyl.2_Missense_Mutation_p.P1136Q|PRG4_uc009wym.2_Missense_Mutation_p.P1095Q|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	1229	Hemopexin-like 2.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GCAGGGTACCCCAAACCAATTT	0.351													9	191					0	0	6.4e-05	0	0
MUC2	4583	broad.mit.edu	37	11	1099777	1099777	+	Silent	SNP	T	C	C			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr11:1099777T>C	uc001lsx.1	+	43	14487	c.14460T>C	c.(14458-14460)CCT>CCC	p.P4820P		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4820	VWFC 1.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GTGTGGGACCTGACAATGTGC	0.572													41	67					0	0	0.000125731	0	0
A2ML1	144568	broad.mit.edu	37	12	9000291	9000291	+	Silent	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr12:9000291C>T	uc001quz.3	+	15	1928	c.1830C>T	c.(1828-1830)CGC>CGT	p.R610R	A2ML1_uc001qva.1_Silent_p.R190R|A2ML1_uc010sgm.1_Silent_p.R110R	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	454						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TGAGCAACCGCTCTGTGAGTA	0.557													11	141					0	0	6.40141e-05	0	0
TMEM5	10329	broad.mit.edu	37	12	64174892	64174892	+	Nonsense_Mutation	SNP	T	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr12:64174892T>G	uc001srq.1	+	2	367	c.263T>G	c.(262-264)TTA>TGA	p.L88*	TMEM5_uc001srr.1_Translation_Start_Site|TMEM5_uc001srs.1_Translation_Start_Site	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	88	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		CTTCAAATATTAGATAAATCC	0.363													75	132					0	0	0.000147903	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80203769	80203769	+	Missense_Mutation	SNP	T	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr12:80203769T>G	uc001syz.2	-	10	1528	c.1261A>C	c.(1261-1263)ATT>CTT	p.I421L	PPP1R12A_uc010suc.1_Missense_Mutation_p.I334L|PPP1R12A_uc001sza.2_Missense_Mutation_p.I421L|PPP1R12A_uc010sud.1_Missense_Mutation_p.I421L|PPP1R12A_uc001szb.2_Missense_Mutation_p.I421L|PPP1R12A_uc001szc.2_Missense_Mutation_p.I421L	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	421						contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						TTGGGAGAAATTTTTGTAGCT	0.363													16	38					0	0	9.7654e-05	0	0
PCDH8	5100	broad.mit.edu	37	13	53422307	53422307	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr13:53422307C>T	uc001vhi.2	-	1	468	c.265G>A	c.(265-267)GGC>AGC	p.G89S	PCDH8_uc001vhj.2_Missense_Mutation_p.G89S	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	89	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CGGTCCAGGCCGGCGTCCCCG	0.657													30	50					0	0	0.000339439	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890238	23890238	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr15:23890238C>G	uc001ywj.3	-	1	938	c.843G>C	c.(841-843)AAG>AAC	p.K281N		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TCCGGGTGGCCTTGCCGGAGC	0.637													10	76					0	0	3.86212e-05	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393													7	17					0	0	3.86212e-05	0	0
MGRN1	23295	broad.mit.edu	37	16	4700468	4700468	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr16:4700468G>T	uc002cwz.2	+	2	327	c.191G>T	c.(190-192)GGC>GTC	p.G64V	MGRN1_uc002cxa.2_Missense_Mutation_p.G64V|MGRN1_uc010btx.2_Missense_Mutation_p.G64V|MGRN1_uc010btw.2_Missense_Mutation_p.G64V|MGRN1_uc002cxb.2_Missense_Mutation_p.G64V|MGRN1_uc010uxo.1_Missense_Mutation_p.G64V|MGRN1_uc010uxp.1_Missense_Mutation_p.G64V|MGRN1_uc010uxq.1_RNA	NM_001142290	NP_001135762	O60291	MGRN1_HUMAN	mahogunin, ring finger 1 isoform 3	64					endosome to lysosome transport|negative regulation of cAMP-mediated signaling|negative regulation of G-protein coupled receptor protein signaling pathway|protein monoubiquitination	cytosol|early endosome|nucleus|plasma membrane|plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						AACTTCCTGGGCAGCCGCCCG	0.597													34	74					4.14481e-20	3.07856e-18	0.000228196	1	0
CMTM1	113540	broad.mit.edu	37	16	66612903	66612903	+	Silent	SNP	G	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr16:66612903G>A	uc002epi.3	+	4	632	c.509G>A	c.(508-510)TGA>TAA	p.*170*	CMTM1_uc002epb.3_RNA|CMTM1_uc002epc.3_RNA|CMTM1_uc002epd.3_RNA|CMTM1_uc002epe.3_RNA|CMTM1_uc002epf.3_RNA|CMTM1_uc002epg.3_RNA|CMTM1_uc002eph.3_3'UTR|CMTM1_uc002epl.3_Silent_p.*123*|CMTM1_uc002epj.3_3'UTR|CMTM1_uc002epk.3_Silent_p.*117*|CMTM1_uc002epa.3_3'UTR|CMTM1_uc002epn.3_3'UTR|CMTM1_uc002epo.3_RNA|CMTM1_uc002epp.3_RNA|CMTM1_uc002epq.3_RNA|CMTM1_uc010cds.2_RNA|CMTM1_uc002epr.3_Silent_p.*287*|CMTM1_uc002epm.3_RNA|CMTM1_uc002eps.2_RNA|CMTM2_uc002ept.2_5'Flank|CMTM2_uc010cdu.2_5'Flank	NM_181269	NP_851786	Q8IZ96	CKLF1_HUMAN	chemokine-like factor superfamily 1 isoform 1	170					chemotaxis	extracellular space|integral to membrane	cytokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0702)|Epithelial(162;0.222)		AGGCCCGCCTGAAGCCAGCCC	0.627													34	50					0	0	0.000409698	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904069	21904069	+	RNA	SNP	C	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr17:21904069C>G	uc002gza.2	+	1		c.8C>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						tccgaggctccggcctgacct	0													4	8					0	0	0.00024832	0	0
TTLL6	284076	broad.mit.edu	37	17	46862380	46862380	+	Missense_Mutation	SNP	T	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr17:46862380T>G	uc010wlo.1	-	14	1980	c.1945A>C	c.(1945-1947)AAT>CAT	p.N649H	TTLL6_uc002iob.2_Missense_Mutation_p.N342H|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Missense_Mutation_p.N402H|TTLL6_uc002iod.2_Missense_Mutation_p.N496H	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	601						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						CTGCTGAGATTGATATTCCTC	0.502													80	111					0	0	0.000147903	0	0
EPX	8288	broad.mit.edu	37	17	56274480	56274480	+	Missense_Mutation	SNP	C	T	T	rs143329228		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr17:56274480C>T	uc002ivq.2	+	7	1068	c.982C>T	c.(982-984)CGG>TGG	p.R328W		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	328					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						GCTCCGCAACCGGACCAACTA	0.617													9	177					0	0	3.86212e-05	0	0
MTIF2	4528	broad.mit.edu	37	2	55473595	55473595	+	Silent	SNP	G	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr2:55473595G>A	uc002ryn.2	-	11	1721	c.984C>T	c.(982-984)GGC>GGT	p.G328G	MTIF2_uc010yox.1_5'UTR|MTIF2_uc002ryo.2_Silent_p.G328G	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	328	G-domain.				regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						TCAGATTATCGCCCTTTAACA	0.353													9	66					0	0	2.17888e-05	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171574	207171574	+	Silent	SNP	G	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr2:207171574G>A	uc002vbp.2	+	5	2572	c.2322G>A	c.(2320-2322)CGG>CGA	p.R774R		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	774							nucleic acid binding|zinc ion binding			ovary(3)	3						GAAAAGAACGGCACATTGACC	0.428													49	259					0	0	0.000147903	0	0
ABCA12	26154	broad.mit.edu	37	2	215865517	215865517	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr2:215865517C>G	uc002vew.2	-	22	3311	c.3091G>C	c.(3091-3093)GCA>CCA	p.A1031P	ABCA12_uc002vev.2_Missense_Mutation_p.A713P|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1031					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TCAATGATTGCTCTTTCAATA	0.428													71	131					0	0	0.000147903	0	0
ATRN	8455	broad.mit.edu	37	20	3564728	3564729	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr20:3564728_3564729CC>AA	uc002wim.2	+	17	3038_3039	c.2948_2949CC>AA	c.(2947-2949)CCC>CAA	p.P983Q	ATRN_uc002wil.2_Missense_Mutation_p.P983Q	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	983	Extracellular (Potential).|PSI 3.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						AGCACCTGCCCCCGTAAGTGAA	0.51													8	241					0	0	6.4e-05	0	0
GART	2618	broad.mit.edu	37	21	34877874	34877874	+	Missense_Mutation	SNP	A	C	C			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr21:34877874A>C	uc002yrx.2	-	20	2854	c.2719T>G	c.(2719-2721)TGG>GGG	p.W907G	GART_uc002yrz.2_Missense_Mutation_p.W907G|GART_uc010gmd.2_Missense_Mutation_p.W569G|GART_uc002yry.2_Missense_Mutation_p.W907G	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	907	GART.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	TTACCATTCCACTTTTGGACA	0.398													4	76					0	0	0.00024832	0	0
ZNF295	49854	broad.mit.edu	37	21	43413770	43413770	+	Silent	SNP	T	C	C			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr21:43413770T>C	uc002zab.3	-	3	649	c.435A>G	c.(433-435)CAA>CAG	p.Q145Q	ZNF295_uc002yzz.3_Silent_p.Q145Q|ZNF295_uc002yzy.3_Silent_p.Q145Q|ZNF295_uc002zaa.3_Silent_p.Q145Q|ZNF295_uc010gov.1_Silent_p.Q145Q|ZNF295_uc002zac.2_Silent_p.Q145Q	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	145					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CACTTCTCTTTTGAGAACTGT	0.403													50	68					0	0	0.000147903	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46057373	46057373	+	Silent	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr21:46057373C>T	uc002zfq.2	+	1	101	c.39C>T	c.(37-39)TGC>TGT	p.C13C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	13						keratin filament					0						CCAGCGCCTGCACTGACTCTT	0.572													31	115					0	0	0.000409698	0	0
PTPN13	5783	broad.mit.edu	37	4	87691259	87691259	+	Silent	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr4:87691259C>T	uc003hpz.2	+	30	5190	c.4710C>T	c.(4708-4710)GTC>GTT	p.V1570V	PTPN13_uc003hpy.2_Silent_p.V1575V|PTPN13_uc003hqa.2_Silent_p.V1551V|PTPN13_uc003hqb.2_Silent_p.V1379V|PTPN13_uc003hqc.1_5'UTR	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1570	PDZ 3.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		CCCAGGAAGTCATATCTGCTC	0.443													9	23					0	0	0.000274275	0	0
DAPP1	27071	broad.mit.edu	37	4	100787246	100787246	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr4:100787246G>C	uc003hvf.3	+	8	832	c.742G>C	c.(742-744)GAT>CAT	p.D248H	DAPP1_uc010ilh.2_Missense_Mutation_p.D248H	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	248	PH.				signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		AGTAGAAGCTGATGAGTGGAT	0.343													11	34					0	0	0.00010058	0	0
GALNT7	51809	broad.mit.edu	37	4	174225146	174225146	+	Splice_Site	SNP	G	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr4:174225146G>A	uc003isz.3	+	8	1350	c.1267_splice	c.e8-1	p.I423_splice	GALNT7_uc011ckb.1_Splice_Site_p.I200_splice	NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7						protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		TTCCTTCATAGATATGGCAGT	0.343													45	94					0	0	0.000147903	0	0
ARSK	153642	broad.mit.edu	37	5	94922371	94922371	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr5:94922371A>G	uc003kld.2	+	5	963	c.805A>G	c.(805-807)AAA>GAA	p.K269E	ARSK_uc010jbg.2_Missense_Mutation_p.K110E|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	269						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		AAGATTTACAAAAAAAGAAAT	0.338													18	58					0	0	7.07596e-05	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607													4	16					0	0	1.23904e-05	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159781881	159781881	+	Silent	SNP	G	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr5:159781881G>A	uc003lyd.2	-	2	277	c.273C>T	c.(271-273)GGC>GGT	p.G91G		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	46	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTCCTGGGGGGCCGGGTGGGC	0.682													9	12					0	0	2.17888e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152546984	152546984	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr6:152546984C>A	uc010kiw.2	-	116	21825	c.21223G>T	c.(21223-21225)GAA>TAA	p.E7075*	SYNE1_uc010kiv.2_Nonsense_Mutation_p.E1599*|SYNE1_uc003qos.3_Nonsense_Mutation_p.E1599*|SYNE1_uc003qot.3_Nonsense_Mutation_p.E7004*|SYNE1_uc003qou.3_Nonsense_Mutation_p.E7075*|SYNE1_uc003qor.3_5'UTR	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7075	Cytoplasmic (Potential).|Spectrin 22.			E -> D (in Ref. 1; AAL33798, 2; AAN60442 and 4; AAO27774).	cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACTTCTTTTTCTTTTGCTTTA	0.378										HNSCC(10;0.0054)			12	90					1.5842e-08	1.12063e-06	0.000151284	1	0
STEAP4	79689	broad.mit.edu	37	7	87910314	87910314	+	Silent	SNP	C	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr7:87910314C>A	uc003ujs.2	-	4	1170	c.1065G>T	c.(1063-1065)GGG>GGT	p.G355G	STEAP4_uc010lek.2_Silent_p.G179G	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	355	Ferric oxidoreductase.|Helical; (Potential).				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ACAGAAAAAACCCAAGTATTC	0.408													16	66					2.32078e-09	1.68172e-07	0.000308642	1	0
DOCK4	9732	broad.mit.edu	37	7	111368620	111368620	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr7:111368620C>T	uc003vfx.2	-	52	5880	c.5611G>A	c.(5611-5613)GAA>AAA	p.E1871K	DOCK4_uc011kml.1_Missense_Mutation_p.E752K|DOCK4_uc011kmm.1_Missense_Mutation_p.E740K|DOCK4_uc003vfw.2_Missense_Mutation_p.E1283K|DOCK4_uc003vfy.2_Missense_Mutation_p.E1916K|DOCK4_uc003vfv.2_Missense_Mutation_p.E184K	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1871					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GCCGACTGTTCATTCACCTGA	0.632													8	92					0	0	3.86212e-05	0	0
TEX15	56154	broad.mit.edu	37	8	30694449	30694449	+	Silent	SNP	T	C	C			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr8:30694449T>C	uc003xil.2	-	3	8202	c.8202A>G	c.(8200-8202)CAA>CAG	p.Q2734Q		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2734										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GTATTTGAGATTGAAAATACC	0.408													31	50					0	0	7.24521e-05	0	0
ZFAT	57623	broad.mit.edu	37	8	135524765	135524765	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr8:135524765T>C	uc003yup.2	-	14	3489	c.3314A>G	c.(3313-3315)CAG>CGG	p.Q1105R	ZFAT_uc011ljj.1_Missense_Mutation_p.Q224R|ZFAT_uc003yun.2_Missense_Mutation_p.Q1093R|ZFAT_uc003yuo.2_Missense_Mutation_p.Q1093R|ZFAT_uc010meh.2_Intron|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.Q1093R|ZFAT_uc010mej.2_Missense_Mutation_p.Q1043R	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	1105					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CACCGCTGCCTGTGTCCCTTG	0.532													5	271					0	0	3.59834e-05	0	0
FAM47B	170062	broad.mit.edu	37	X	34961454	34961454	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chrX:34961454G>A	uc004ddi.1	+	1	524	c.506G>A	c.(505-507)CGG>CAG	p.R169Q		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	169										ovary(3)|breast(1)	4						TGTGAGGCCCGGGAGAAGACA	0.592													28	5					0	0	0.000147802	0	0
IQSEC2	23096	broad.mit.edu	37	X	53268433	53268433	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chrX:53268433C>G	uc004dsd.2	-	11	3260	c.3059G>C	c.(3058-3060)AGT>ACT	p.S1020T	IQSEC2_uc004dsc.2_Missense_Mutation_p.S815T	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	1010	PH.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						CTGACGGAAACTGTACGTCAC	0.502											OREG0019800	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	7					0	0	0.000227799	0	0
Unknown	0	broad.mit.edu	37	1	243251423	243251423	+	RNA	DEL	A	-	-			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr1:243251423delA	uc001hzq.1	-	8		c.1209delT								Homo sapiens cDNA FLJ52610 complete cds.																		actccatctcaaaaaaaaaaa	0.179													3	4	---	---	---	---					
C9orf84	158401	broad.mit.edu	37	9	114454268	114454270	+	In_Frame_Del	DEL	CTC	-	-			TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	g.chr9:114454268_114454270delCTC	uc004bfr.2	-	25	3930_3932	c.3795_3797delGAG	c.(3793-3798)AGGAGA>AGA	p.1265_1266RR>R	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_In_Frame_Del_p.1226_1227RR>R|C9orf84_uc010mug.2_In_Frame_Del_p.1176_1177RR>R	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1265_1266										ovary(2)	2						TTCATGTGTTCTCCTTTTCTGAG	0.369													10	46	---	---	---	---					
