Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABP1	26	genome.wustl.edu	37	7	150556992	150556992	+	Missense_Mutation	SNP	C	C	T	rs10952294	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150556992	150556992	C	T	SNP	ABP1	ENST00000480582	human	ensembl	57_37b	+1	known	missense	c.490	p.R164C	0.002	NULL	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain	-	
ACTN4	81	genome.wustl.edu	37	19	39216514	39216514	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39216514	39216514	G	T	SNP	ACTN4	NM_004924	human	genbank	57_37b	+1	reviewed	missense	c.2161	p.D721Y	1.000	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen	-	no_errors
ATRN	8455	genome.wustl.edu	37	20	3452041	3452041	+	Missense_Mutation	SNP	C	C	T	rs75653676	by1000genomes	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3452041	3452041	C	T	SNP	ATRN	NM_139321	human	genbank	57_37b	+1	reviewed	missense	c.287	p.A96V	1.000	superfamily_EGF/Laminin	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMPfam_PSI,HMMSmart_SM00423,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1	-	
C7orf50	84310	genome.wustl.edu	37	7	1037383	1037383	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1037383	1037383	C	A	SNP	C7orf50	NM_001134395	human	genbank	57_37b	-1	validated	missense	c.463	p.A155S	0.969	HMMPfam_DUF2373	HMMPfam_DUF2373	-	no_errors
CBX2	84733	genome.wustl.edu	37	17	77758484	77758484	+	Silent	SNP	G	G	A	rs3751956	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	77758484	77758484	G	A	SNP	CBX2	NM_005189	human	genbank	57_37b	+1	reviewed	silent	c.1242	p.L414	0.305	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1	-	
COL1A1	1277	genome.wustl.edu	37	17	48274595	48274595	+	Splice_Site	SNP	C	C	T	rs67163049	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48274595	48274595	C	T	SNP	COL1A1	NM_000088	human	genbank	57_37b	-1	reviewed	splice_site	c.697-1	e10-1	1.000	-	-	-	
DAO	1610	genome.wustl.edu	37	12	109288095	109288095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109288095	109288095	G	A	SNP	DAO	NM_001917	human	genbank	57_37b	+1	reviewed	silent	c.564	p.A188	0.107	superfamily_Nucleotide-binding domain,HMMPfam_DAO	superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,PatternScan_AA_TRNA_LIGASE_I,PatternScan_DAO	-	no_errors
DIP2B	57609	genome.wustl.edu	37	12	51128870	51128870	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51128870	51128870	A	G	SNP	DIP2B	NM_173602	human	genbank	57_37b	+1	validated	missense	c.4058	p.E1353G	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	-	no_errors
DIS3	22894	genome.wustl.edu	37	13	73349502	73349502	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	73349502	73349502	C	T	SNP	DIS3	NM_014953	human	genbank	57_37b	-1	validated	silent	c.834	p.Q278	1.000	NULL	superfamily_PIN domain-like,HMMSmart_SM00670,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors
ENSG00000236623	0	genome.wustl.edu	37	10	42391839	42391839	+	RNA	DEL	G	G	-	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42391839	42391839	G	-	DEL	ENSG00000236623	ENST00000423802	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	(deletion:rna[42391286,42391866])	no_errors
ENSG00000245620	0	genome.wustl.edu	37	17	56382662	56382662	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56382662	56382662	G	A	SNP	ENSG00000245620	ENST00000500524	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ESR1	2099	genome.wustl.edu	37	6	152129128	152129131	+	Frame_Shift_Del	DEL	CCGT	CCGT	-	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	CCGT	CCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152129128	152129131	CCGT	-	DEL	ESR1	NM_000125	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.81_84	p.P29fs	0.656:0.976:0.987:0.995	HMMPfam_Oest_recep	HMMPfam_Oest_recep,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	(deletion:cds_exon[152129048,152129499])	no_errors
FLJ45983	399717	genome.wustl.edu	37	10	8093034	8093034	+	RNA	SNP	G	G	T	rs501764	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8093034	8093034	G	T	SNP	FLJ45983	NR_024256	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
GATA3	2625	genome.wustl.edu	37	10	8115922	8115923	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115922	8115923	-	C	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1271_1272	p.P426fs	1.000:1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GDPD1	284161	genome.wustl.edu	37	17	57326133	57326133	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57326133	57326133	C	T	SNP	GDPD1	NM_182569	human	genbank	57_37b	+1	validated	silent	c.354	p.V118	0.997	superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD	superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD	-	no_errors
IGFALS	3483	genome.wustl.edu	37	16	1842209	1842209	+	Silent	SNP	A	A	G	rs3751893	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1842209	1842209	A	G	SNP	IGFALS	NM_004970	human	genbank	57_37b	-1	reviewed	silent	c.210	p.D70	0.000	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,HMMSmart_LRRCT	-	
LILRB2	10288	genome.wustl.edu	37	19	54784374	54784374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54784374	54784374	C	T	SNP	LILRB2	ENST00000391747	human	ensembl	57_37b	-1	known	missense	c.29	p.S10N	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
LTBP4	8425	genome.wustl.edu	37	19	41125311	41125311	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41125311	41125311	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	57_37b	+1	known	nonsense	c.3328	p.E1110*	0.996	superfamily_SSF57196,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF,PatternScan_ASX_HYDROXYL	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Grow_fac_recept	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56152454	56152455	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56152454	56152455	-	A	INS	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_ins	c.510_511	p.G171fs	0.997:1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MGAM	8972	genome.wustl.edu	37	7	141752647	141752647	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141752647	141752647	G	T	SNP	MGAM	NM_004668	human	genbank	57_37b	+1	reviewed	missense	c.3022	p.V1008F	0.014	NULL	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-	no_errors
MMP15	4324	genome.wustl.edu	37	16	58075625	58075625	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58075625	58075625	C	A	SNP	MMP15	NM_002428	human	genbank	57_37b	+1	reviewed	missense	c.1015	p.P339T	1.000	NULL	HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
MYO7A	4647	genome.wustl.edu	37	11	76872024	76872024	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76872024	76872024	C	T	SNP	MYO7A	NM_000260	human	genbank	57_37b	+1	reviewed	silent	c.1206	p.I402	0.996	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_FERM_M	-	no_errors
NUDT22	84304	genome.wustl.edu	37	11	63994510	63994510	+	Missense_Mutation	SNP	C	C	G	rs34448455	byCluster;byFrequency	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63994510	63994510	C	G	SNP	NUDT22	NM_001128612	human	genbank	57_37b	+1	validated	missense	c.386	p.T129R	0.988	NULL	NULL	-	
OR10Z1	128368	genome.wustl.edu	37	1	158577134	158577134	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158577134	158577134	G	C	SNP	OR10Z1	NM_001004478	human	genbank	57_37b	+1	provisional	missense	c.906	p.R302S	0.032	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
RALGAPA1	253959	genome.wustl.edu	37	14	36155819	36155819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	36155819	36155819	C	T	SNP	RALGAPA1	NM_194301	human	genbank	57_37b	-1	provisional	missense	c.2488	p.G830S	1.000	NULL	superfamily_SSF111347,HMMPfam_Rap_GAP	-	no_errors
SLC12A5	57468	genome.wustl.edu	37	20	44665941	44665941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44665941	44665941	G	T	SNP	SLC12A5	NM_001134771	human	genbank	57_37b	+1	reviewed	missense	c.598	p.G200W	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC38A8	146167	genome.wustl.edu	37	16	84050323	84050323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84050323	84050323	C	T	SNP	SLC38A8	NM_001080442	human	genbank	57_37b	-1	provisional	missense	c.963	p.M321I	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SNX20	124460	genome.wustl.edu	37	16	50709816	50709816	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50709816	50709816	C	T	SNP	SNX20	NM_182854	human	genbank	57_37b	-1	validated	silent	c.147	p.L49	0.046	NULL	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	-	no_errors
USP11	8237	genome.wustl.edu	37	X	47101513	47101513	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47101513	47101513	A	G	SNP	USP11	NM_004651	human	genbank	57_37b	+1	reviewed	silent	c.1341	p.K447	1.000	superfamily_SSF54001,HMMPfam_UCH	HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
WRNIP1	56897	genome.wustl.edu	37	6	2785389	2785389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	2785389	2785389	G	A	SNP	WRNIP1	NM_020135	human	genbank	57_37b	+1	reviewed	missense	c.1871	p.R624K	1.000	NULL	HMMSmart_SM00734,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors
