Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABT1	29777	genome.wustl.edu	37	6	26598798	26598798	+	Silent	SNP	G	A	A	rs3800304	byCluster;byFrequency;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26598798	26598798	G	A	SNP	ABT1	NM_013375	human	genbank	57_37b	+1	reviewed	silent	c.744	p.G248	0.985	NULL	superfamily_SSF54928	-	
ARHGAP11A	9824	genome.wustl.edu	37	15	32929250	32929250	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	32929250	32929250	C	A	SNP	ARHGAP11A	NM_014783	human	genbank	57_37b	+1	validated	missense	c.2276	p.A759D	0.007	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
ARMC5	79798	genome.wustl.edu	37	16	31474228	31474228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31474228	31474228	C	T	SNP	ARMC5	NM_001105247	human	genbank	57_37b	+1	validated	missense	c.1360	p.R454W	0.991	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm	-	no_errors
ASTN2	23245	genome.wustl.edu	37	9	119188282	119188282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	119188282	119188282	C	T	SNP	ASTN2	NM_198187	human	genbank	57_37b	-1	validated	missense	c.3868	p.V1290M	0.996	NULL	superfamily_EGF/Laminin,HMMSmart_SM00457,superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors
BTBD6	90135	genome.wustl.edu	37	14	105716214	105716214	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105716214	105716214	C	T	SNP	BTBD6	NM_033271	human	genbank	57_37b	+1	validated	silent	c.438	p.S146	0.003	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_PHR	-	no_errors
C1orf185	284546	genome.wustl.edu	37	1	51584393	51584393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	51584393	51584393	C	T	SNP	C1orf185	NM_001136508	human	genbank	57_37b	+1	predicted	missense	c.178	p.P60S	0.133	NULL	NULL	-	no_errors
CFHR3	10878	genome.wustl.edu	37	1	196757392	196757392	+	Silent	SNP	C	C	T	rs61735322	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196757392	196757392	C	T	SNP	CFHR3	NM_021023	human	genbank	57_37b	+1	reviewed	silent	c.477	p.S159	0.026	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	
COL1A1	1277	genome.wustl.edu	37	17	48267939	48267939	+	Missense_Mutation	SNP	C	C	T	rs67879854	byCluster	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48267939	48267939	C	T	SNP	COL1A1	NM_000088	human	genbank	57_37b	-1	reviewed	missense	c.2362	p.G788S	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	
DAZAP1	26528	genome.wustl.edu	37	19	1418354	1418354	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1418354	1418354	G	T	SNP	DAZAP1	NM_018959	human	genbank	57_37b	+1	reviewed	silent	c.222	p.T74	0.140	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
DHX32	55760	genome.wustl.edu	37	10	127530353	127530353	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127530353	127530353	T	G	SNP	DHX32	NM_018180	human	genbank	57_37b	-1	reviewed	missense	c.1502	p.D501A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
DMWD	1762	genome.wustl.edu	37	19	46289392	46289392	+	Silent	SNP	G	G	C	rs8110017	byCluster;byHapMap;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46289392	46289392	G	C	SNP	DMWD	NM_004943	human	genbank	57_37b	-1	validated	silent	c.1362	p.P454	0.347	NULL	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	
DULLARD	23399	genome.wustl.edu	37	17	7154582	7154582	+	Missense_Mutation	SNP	T	C	C	rs3744399	byCluster	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7154582	7154582	T	C	SNP	DULLARD	NM_001143775	human	genbank	57_37b	-1	validated	missense	c.34	p.T12A	1.000	NULL	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577	-	
EIF5	1983	genome.wustl.edu	37	14	103802230	103802230	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	103802230	103802230	C	G	SNP	EIF5	NM_001969	human	genbank	57_37b	+1	validated	missense	c.33	p.D11E	1.000	HMMPfam_eIF-5_eIF-2B,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain	HMMPfam_eIF-5_eIF-2B,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain,HMMSmart_SM00653,superfamily_Zinc-binding domain of translation initiation factor 2 beta,superfamily_ARM repeat,HMMSmart_SM00515,HMMPfam_W2	-	no_errors
EMR2	30817	genome.wustl.edu	37	19	14866468	14866468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14866468	14866468	G	A	SNP	EMR2	NM_013447	human	genbank	57_37b	-1	reviewed	missense	c.1414	p.R472C	0.047	NULL	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
ENSG00000220161	0	genome.wustl.edu	37	17	18315107	18315108	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18315107	18315108	-	CT	INS	ENSG00000220161	ENST00000407600	human	ensembl	57_37b	+1	known	frame_shift_ins	c.258_259	p.T87fs	0.946:0.948	NULL	NULL	-	no_errors
ENSG00000231942	0	genome.wustl.edu	37	8	82720513	82720513	+	Silent	SNP	C	C	T	rs61737204	by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	82720513	82720513	C	T	SNP	ENSG00000231942	ENST00000417520	human	ensembl	57_37b	+1	known	silent	c.441	p.T147	0.998	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	
ENSG00000247772	0	genome.wustl.edu	37	11	47377894	47377895	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47377894	47377895	CA	-	DEL	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.007:0.007	-	-	(deletion:rna[47376886,47379300])	no_errors
ERVWE1	30816	genome.wustl.edu	37	7	92098206	92098206	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92098206	92098206	A	T	SNP	ERVWE1	NM_014590	human	genbank	57_37b	-1	reviewed	missense	c.1490	p.I497N	0.371	NULL	HMMPfam_TLV_coat	-	no_errors
FAM133A	286499	genome.wustl.edu	37	X	92964617	92964617	+	Missense_Mutation	SNP	G	G	A	rs34123774	byCluster;byFrequency	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	92964617	92964617	G	A	SNP	FAM133A	NM_173698	human	genbank	57_37b	+1	validated	missense	c.199	p.E67K	0.792	NULL	NULL	-	
FLII	2314	genome.wustl.edu	37	17	18149307	18149307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18149307	18149307	C	T	SNP	FLII	NM_002018	human	genbank	57_37b	-1	reviewed	missense	c.3337	p.E1113K	1.000	superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	superfamily_SSF52047,HMMPfam_LRR_1,superfamily_SSF52058,HMMSmart_LRR_TYP,superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	-	no_errors
FSCB	84075	genome.wustl.edu	37	14	44974922	44974922	+	Missense_Mutation	SNP	A	A	T	rs3825632	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	44974922	44974922	A	T	SNP	FSCB	NM_032135	human	genbank	57_37b	-1	validated	missense	c.1269	p.D423E	0.002	NULL	NULL	-	
FXYD8	0	genome.wustl.edu	37	X	73094954	73094954	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73094954	73094954	G	T	SNP	FXYD8	ENST00000373495	human	ensembl	57_37b	+1	known	missense	c.52	p.A18S	0.106	NULL	HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD	-	no_errors
GLYR1	84656	genome.wustl.edu	37	16	4862120	4862122	+	In_Frame_Del	DEL	AGC	AGC	-	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4862120	4862122	AGC	-	DEL	GLYR1	NM_032569	human	genbank	57_37b	-1	validated	in_frame_del	c.1249_1247	p.C416in_frame_del	1.000:1.000:1.000	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_AT_hook,HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like	(deletion:cds_exon[4862087,4862249])	no_errors
IRAK1	3654	genome.wustl.edu	37	X	153284685	153284685	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153284685	153284685	C	A	SNP	IRAK1	NM_001569	human	genbank	57_37b	-1	reviewed	silent	c.399	p.R133	0.037	NULL	superfamily_DEATH domain,HMMPfam_Death,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
KRT24	192666	genome.wustl.edu	37	17	38859928	38859928	+	Silent	SNP	G	G	A	rs75145537	byFrequency;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38859928	38859928	G	A	SNP	KRT24	NM_019016	human	genbank	57_37b	-1	reviewed	silent	c.18	p.R6	0.000	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	
LATS1	9113	genome.wustl.edu	37	6	150001395	150001395	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	150001395	150001395	G	A	SNP	LATS1	NM_004690	human	genbank	57_37b	-1	reviewed	nonsense	c.2209	p.R737*	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_UBA-like,HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C	-	no_errors
LOC100287829	0	genome.wustl.edu	37	17	15332770	15332770	+	Missense_Mutation	SNP	A	C	C	rs3109780	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15332770	15332770	A	C	SNP	LOC100287829	XM_002343491	human	genbank	57_37b	+1	model	missense	c.110	p.Q37P	0.000	NULL	NULL	-	
LOC100287986	0	genome.wustl.edu	37	19	15695617	15695617	+	Missense_Mutation	SNP	T	T	C	rs667386	byCluster;byFrequency;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15695617	15695617	T	C	SNP	LOC100287986	XM_002343618	human	genbank	57_37b	-1	model	missense	c.1294	p.I432V	0.003	NULL	NULL	-	
MLLT10	8028	genome.wustl.edu	37	10	21959565	21959565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21959565	21959565	G	A	SNP	MLLT10	NM_004641	human	genbank	57_37b	+1	validated	missense	c.983	p.R328K	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
NKTR	4820	genome.wustl.edu	37	3	42659115	42659115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42659115	42659115	A	G	SNP	NKTR	NM_005385	human	genbank	57_37b	+1	reviewed	missense	c.112	p.N38D	1.000	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
OR2T2	401992	genome.wustl.edu	37	1	248616513	248616513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248616513	248616513	C	T	SNP	OR2T2	NM_001004136	human	genbank	57_37b	+1	provisional	missense	c.415	p.R139C	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCDH7	5099	genome.wustl.edu	37	4	30725334	30725334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	30725334	30725334	G	T	SNP	PCDH7	NM_032457	human	genbank	57_37b	+1	reviewed	missense	c.2149	p.A717S	1.000	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMPfam_Protocadherin	-	no_errors
PITPNM1	9600	genome.wustl.edu	37	11	67269453	67269453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67269453	67269453	C	T	SNP	PITPNM1	NM_004910	human	genbank	57_37b	-1	validated	missense	c.520	p.D174N	1.000	HMMPfam_IP_trans,superfamily_Bet v1-like	HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors
PJA1	64219	genome.wustl.edu	37	X	68382547	68382547	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	68382547	68382547	G	A	SNP	PJA1	NM_145119	human	genbank	57_37b	-1	validated	nonsense	c.535	p.R179*	0.001	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
PLA2G4A	5321	genome.wustl.edu	37	1	186839861	186839861	+	Missense_Mutation	SNP	G	G	A	rs7547993	byCluster;byFrequency;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186839861	186839861	G	A	SNP	PLA2G4A	ENST00000419192	human	ensembl	57_37b	+1	known	missense	c.133	p.A45T	0.988	NULL	NULL	-	
PLXNA4	91584	genome.wustl.edu	37	7	131908302	131908302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	131908302	131908302	C	T	SNP	PLXNA4	NM_020911	human	genbank	57_37b	-1	validated	missense	c.2081	p.R694Q	1.000	HMMPfam_PSI,HMMSmart_SM00423	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
PLXND1	23129	genome.wustl.edu	37	3	129289712	129289712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129289712	129289712	C	T	SNP	PLXND1	NM_015103	human	genbank	57_37b	-1	validated	missense	c.3667	p.D1223N	0.998	superfamily_E set domains	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
RASAL3	64926	genome.wustl.edu	37	19	15565621	15565621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15565621	15565621	C	T	SNP	RASAL3	NM_022904	human	genbank	57_37b	-1	validated	missense	c.1805	p.R602Q	0.992	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	superfamily_PH domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
RFX2	5990	genome.wustl.edu	37	19	6040046	6040046	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6040046	6040046	C	A	SNP	RFX2	NM_000635	human	genbank	57_37b	-1	reviewed	missense	c.467	p.G156V	0.975	HMMPfam_RFX1_trans_act	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
SDK1	221935	genome.wustl.edu	37	7	4008969	4008969	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4008969	4008969	G	A	SNP	SDK1	NM_152744	human	genbank	57_37b	+1	validated	missense	c.1627	p.V543I	0.039	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
SEMA4G	57715	genome.wustl.edu	37	10	102732993	102732993	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102732993	102732993	T	G	SNP	SEMA4G	NM_017893	human	genbank	57_37b	+1	reviewed	missense	c.232	p.S78A	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG	-	no_errors
SGSM1	129049	genome.wustl.edu	37	22	25315810	25315810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25315810	25315810	G	A	SNP	SGSM1	NM_001039948	human	genbank	57_37b	+1	validated	missense	c.3208	p.V1070I	1.000	HMMSmart_SM00164,HMMPfam_TBC,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_RUN,HMMSmart_SM00593,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC	-	no_errors
SLC39A3	29985	genome.wustl.edu	37	19	2732986	2732986	+	Silent	SNP	T	T	C	rs759073	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2732986	2732986	T	C	SNP	SLC39A3	NM_144564	human	genbank	57_37b	-1	validated	silent	c.708	p.V236	1.000	HMMPfam_Zip	HMMPfam_Zip	-	
SPRYD4	283377	genome.wustl.edu	37	12	56862936	56862936	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56862936	56862936	A	C	SNP	SPRYD4	NM_207344	human	genbank	57_37b	+1	validated	missense	c.199	p.N67H	1.000	NULL	HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
STMN4	81551	genome.wustl.edu	37	8	27098633	27098633	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27098633	27098633	G	A	SNP	STMN4	NM_030795	human	genbank	57_37b	-1	provisional	missense	c.337	p.R113W	1.000	superfamily_Stathmin,HMMPfam_Stathmin,PatternScan_STATHMIN_1	superfamily_Stathmin,HMMPfam_Stathmin,PatternScan_STATHMIN_1,PatternScan_STATHMIN_2	-	no_errors
SYT12	91683	genome.wustl.edu	37	11	66811295	66811295	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66811295	66811295	G	T	SNP	SYT12	NM_177963	human	genbank	57_37b	+1	provisional	missense	c.808	p.G270C	0.998	superfamily_C2_CaLB,HMMSmart_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
TANC2	26115	genome.wustl.edu	37	17	61498828	61498828	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61498828	61498828	A	G	SNP	TANC2	NM_025185	human	genbank	57_37b	+1	validated	missense	c.5485	p.T1829A	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
TBL3	10607	genome.wustl.edu	37	16	2027601	2027601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2027601	2027601	G	A	SNP	TBL3	NM_006453	human	genbank	57_37b	+1	reviewed	missense	c.1829	p.G610E	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_Utp13	-	no_errors
TRIP10	9322	genome.wustl.edu	37	19	6750615	6750615	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6750615	6750615	G	T	SNP	TRIP10	NM_004240	human	genbank	57_37b	+1	validated	missense	c.1460	p.G487V	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
ZNF705G	100131980	genome.wustl.edu	37	8	7217792	7217792	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14O-01A-31D-A10Y-09	TCGA-E2-A14O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	7217792	7217792	C	A	SNP	ZNF705G	ENST00000400156	human	ensembl	57_37b	-1	known	nonsense	c.202	p.E68*	0.514	NULL	HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
