Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACY1	95	genome.wustl.edu	37	3	52019910	52019910	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52019910	52019910	G	C	SNP	ACY1	NM_000666	human	genbank	57_37b	+1	reviewed	missense	c.307	p.E103Q	0.543	superfamily_SSF53187,HMMPfam_Peptidase_M20	superfamily_SSF53187,PatternScan_ARGE_DAPE_CPG2_1,HMMPfam_Peptidase_M20,PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors
AMPD1	270	genome.wustl.edu	37	1	115226908	115226908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115226908	115226908	C	G	SNP	AMPD1	NM_000036	human	genbank	57_37b	-1	reviewed	missense	c.459	p.K153N	0.999	NULL	superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-	no_errors
ANKRD31	256006	genome.wustl.edu	37	5	74364415	74364415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74364415	74364415	C	T	SNP	ANKRD31	ENST00000274361	human	ensembl	57_37b	-1	known	missense	c.5551	p.E1851K	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
ARFGEF1	10565	genome.wustl.edu	37	8	68178346	68178346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	68178346	68178346	G	A	SNP	ARFGEF1	NM_006421	human	genbank	57_37b	-1	reviewed	missense	c.2018	p.S673L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160059363	160059363	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160059363	160059363	C	G	SNP	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	missense	c.1393	p.E465Q	1.000	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
BMP2	650	genome.wustl.edu	37	20	6751034	6751034	+	Silent	SNP	A	A	G	rs1049007	byCluster;byFrequency;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	6751034	6751034	A	G	SNP	BMP2	NM_001200	human	genbank	57_37b	+1	reviewed	silent	c.261	p.S87	0.895	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	
CARD6	84674	genome.wustl.edu	37	5	40843622	40843622	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	40843622	40843622	G	C	SNP	CARD6	NM_032587	human	genbank	57_37b	+1	reviewed	missense	c.652	p.V218L	0.001	NULL	superfamily_DEATH_like,HMMPfam_CARD	-	no_errors
CCNB3	85417	genome.wustl.edu	37	X	50089661	50089662	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50089661	50089662	-	A	INS	CCNB3	NM_033031	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.3665_3666	p.P1223fs	0.933:0.937	superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385	superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385,HMMPfam_Cyclin_C	-	no_errors
CCT8L2	150160	genome.wustl.edu	37	22	17072619	17072619	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17072619	17072619	G	A	SNP	CCT8L2	NM_014406	human	genbank	57_37b	-1	validated	silent	c.822	p.S274	0.013	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-	no_errors
CD33	945	genome.wustl.edu	37	19	51738413	51738413	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51738413	51738413	G	T	SNP	CD33	NM_001772	human	genbank	57_37b	+1	validated	silent	c.747	p.G249	0.008	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
CIRBP	1153	genome.wustl.edu	37	19	1272339	1272339	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1272339	1272339	G	A	SNP	CIRBP	ENST00000413636	human	ensembl	57_37b	+1	known	missense	c.689	p.R230H	0.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
CSF2RA	1438	genome.wustl.edu	37	X	1407467	1407467	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1407467	1407467	T	A	SNP	CSF2RA	NM_006140	human	genbank	57_37b	+1	reviewed	missense	c.275	p.V92D	0.044	NULL	superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
CYP2C19	1557	genome.wustl.edu	37	10	96580363	96580363	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96580363	96580363	C	A	SNP	CYP2C19	NM_000769	human	genbank	57_37b	+1	reviewed	silent	c.930	p.L310	0.001	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DDX41	51428	genome.wustl.edu	37	5	176943429	176943429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176943429	176943429	C	T	SNP	DDX41	NM_016222	human	genbank	57_37b	-1	reviewed	missense	c.158	p.R53Q	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_zf-CCHC	-	no_errors
DTX1	1840	genome.wustl.edu	37	12	113532664	113532664	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113532664	113532664	T	A	SNP	DTX1	NM_004416	human	genbank	57_37b	+1	reviewed	missense	c.1298	p.V433E	1.000	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
ENSG00000222301	0	genome.wustl.edu	37	13	103472394	103472394	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103472394	103472394	C	T	SNP	ENSG00000222301	ENST00000410369	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.011	-	-	-	no_errors
ENSG00000245306	0	genome.wustl.edu	37	3	20212139	20212139	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	20212139	20212139	C	T	SNP	ENSG00000245306	ENST00000500379	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
EPHA7	2045	genome.wustl.edu	37	6	94068126	94068126	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	94068126	94068126	C	A	SNP	EPHA7	NM_004440	human	genbank	57_37b	-1	reviewed	missense	c.836	p.C279F	1.000	superfamily_Growth factor receptor domain	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Growth factor receptor domain,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
F2RL2	2151	genome.wustl.edu	37	5	75914384	75914384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	75914384	75914384	C	T	SNP	F2RL2	NM_004101	human	genbank	57_37b	-1	reviewed	missense	c.148	p.E50K	0.038	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FRMPD4	9758	genome.wustl.edu	37	X	12736883	12736883	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	12736883	12736883	G	T	SNP	FRMPD4	NM_014728	human	genbank	57_37b	+1	reviewed	missense	c.3938	p.R1313L	1.000	NULL	PatternScan_WW_DOMAIN_1,PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
GGT3P	2679	genome.wustl.edu	37	22	18769145	18769145	+	RNA	SNP	G	G	A	rs4532044	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18769145	18769145	G	A	SNP	GGT3P	NR_003267	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.858	-	-	-	
GMEB1	10691	genome.wustl.edu	37	1	29023445	29023445	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29023445	29023445	G	A	SNP	GMEB1	NM_006582	human	genbank	57_37b	+1	reviewed	missense	c.477	p.M159I	1.000	HMMPfam_SAND,superfamily_SAND domain-like,HMMSmart_SM00258	HMMPfam_SAND,superfamily_SAND domain-like,HMMSmart_SM00258	-	no_errors
GPR98	84059	genome.wustl.edu	37	5	90024745	90024745	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	90024745	90024745	T	G	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	missense	c.10421	p.F3474C	0.111	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors
GRIK2	2898	genome.wustl.edu	37	6	102074363	102074363	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	102074363	102074363	A	C	SNP	GRIK2	NM_021956	human	genbank	57_37b	+1	reviewed	missense	c.392	p.Q131P	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
GSTA4	2941	genome.wustl.edu	37	6	52849324	52849324	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	52849324	52849324	G	A	SNP	GSTA4	NM_001512	human	genbank	57_37b	-1	reviewed	nonsense	c.352	p.Q118*	0.080	superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors
GUCY1B3	2983	genome.wustl.edu	37	4	156721140	156721140	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	156721140	156721140	C	T	SNP	GUCY1B3	NM_000857	human	genbank	57_37b	+1	validated	silent	c.1089	p.Y363	1.000	HMMPfam_HNOBA	HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
HAUS4	54930	genome.wustl.edu	37	14	23421871	23421871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23421871	23421871	G	A	SNP	HAUS4	NM_017815	human	genbank	57_37b	-1	reviewed	missense	c.77	p.P26L	1.000	NULL	NULL	-	no_errors
HOXA5	3202	genome.wustl.edu	37	7	27181585	27181585	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27181585	27181585	T	C	SNP	HOXA5	NM_019102	human	genbank	57_37b	-1	reviewed	missense	c.682	p.I228V	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
IL13RA2	3598	genome.wustl.edu	37	X	114244201	114244201	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114244201	114244201	A	C	SNP	IL13RA2	NM_000640	human	genbank	57_37b	-1	reviewed	silent	c.735	p.T245	0.000	superfamily_FN_III-like	superfamily_FN_III-like,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
IL17RD	54756	genome.wustl.edu	37	3	57132384	57132384	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57132384	57132384	G	A	SNP	IL17RD	NM_017563	human	genbank	57_37b	-1	validated	silent	c.1347	p.L449	1.000	HMMPfam_SEFIR	HMMPfam_SEFIR	-	no_errors
ILF3	3609	genome.wustl.edu	37	19	10781755	10781755	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10781755	10781755	C	G	SNP	ILF3	NM_017620	human	genbank	57_37b	+1	reviewed	missense	c.109	p.H37D	1.000	NULL	HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
ITGAE	3682	genome.wustl.edu	37	17	3620003	3620003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3620003	3620003	C	T	SNP	ITGAE	NM_002208	human	genbank	57_37b	-1	reviewed	silent	c.3423	p.V1141	0.192	NULL	superfamily_SSF69318,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
KIAA0564	23078	genome.wustl.edu	37	13	42149921	42149921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	42149921	42149921	C	T	SNP	KIAA0564	NM_015058	human	genbank	57_37b	-1	validated	missense	c.5325	p.M1775I	0.000	superfamily_vWA-like,HMMSmart_SM00327	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors
KIRREL3	84623	genome.wustl.edu	37	11	126396533	126396533	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	126396533	126396533	C	T	SNP	KIRREL3	NM_032531	human	genbank	57_37b	-1	reviewed	silent	c.183	p.S61	0.003	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set	-	no_errors
L2HGDH	79944	genome.wustl.edu	37	14	50778816	50778816	+	Missense_Mutation	SNP	A	A	C	rs2275591	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	50778816	50778816	A	C	SNP	L2HGDH	NM_024884	human	genbank	57_37b	-1	reviewed	missense	c.53	p.L18R	0.000	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO	-	
LOC100132672	0	genome.wustl.edu	37	9	69501032	69501032	+	RNA	SNP	T	T	C	rs79662748	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69501032	69501032	T	C	SNP	LOC100132672	XR_038504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.960	-	-	-	
LOC100289661	0	genome.wustl.edu	37	19	40704346	40704346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40704346	40704346	C	T	SNP	LOC100289661	XM_002343682	human	genbank	57_37b	-1	model	missense	c.1735	p.E579K	0.968	NULL	NULL	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23686673	23686673	+	Missense_Mutation	SNP	G	G	A	rs59122400	byCluster;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23686673	23686673	G	A	SNP	LOC283685	XM_002343322	human	genbank	57_37b	-1	model	missense	c.835	p.R279W	0.011	NULL	NULL	-	
LOC440300	440300	genome.wustl.edu	37	15	84860930	84860930	+	RNA	SNP	G	G	A	rs4273011	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84860930	84860930	G	A	SNP	LOC440300	XR_078504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.981	-	-	-	
MED25	81857	genome.wustl.edu	37	19	50322461	50322461	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50322461	50322461	C	G	SNP	MED25	NM_030973	human	genbank	57_37b	+1	validated	missense	c.213	p.F71L	1.000	NULL	NULL	-	no_errors
MPP6	51678	genome.wustl.edu	37	7	24718895	24718895	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	24718895	24718895	T	C	SNP	MPP6	NM_016447	human	genbank	57_37b	+1	provisional	silent	c.1260	p.D420	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,HMMPfam_Guanylate_kin	HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors
MSH5	4439	genome.wustl.edu	37	6	31727737	31727737	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31727737	31727737	G	A	SNP	MSH5	NM_025259	human	genbank	57_37b	+1	reviewed	missense	c.1721	p.R574Q	0.977	HMMSmart_MUTSd,HMMPfam_MutS_V,superfamily_SSF52540	HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors
MTHFD1L	25902	genome.wustl.edu	37	6	151334924	151334924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151334924	151334924	G	A	SNP	MTHFD1L	NM_015440	human	genbank	57_37b	+1	validated	missense	c.2275	p.G759S	1.000	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Aminoacid dehydrogenase-like N-terminal domain,HMMPfam_THF_DHG_CYH,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C,HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_FTHFS_1,PatternScan_FTHFS_2	-	no_errors
MYO1C	4641	genome.wustl.edu	37	17	1373518	1373518	+	Missense_Mutation	SNP	T	C	C	rs9905106	byCluster;byHapMap;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1373518	1373518	T	C	SNP	MYO1C	NM_001080779	human	genbank	57_37b	-1	reviewed	missense	c.2477	p.Q826R	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	
NBEA	26960	genome.wustl.edu	37	13	35517230	35517230	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	35517230	35517230	C	T	SNP	NBEA	NM_015678	human	genbank	57_37b	+1	reviewed	silent	c.273	p.I91	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
NCOA5	57727	genome.wustl.edu	37	20	44692114	44692114	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44692114	44692114	G	A	SNP	NCOA5	NM_020967	human	genbank	57_37b	-1	reviewed	silent	c.1035	p.L345	1.000	NULL	superfamily_Anticodon-binding domain of Class II aaRS	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228486404	228486404	+	Missense_Mutation	SNP	C	C	T	rs56021350	byCluster;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228486404	228486404	C	T	SNP	OBSCN	ENST00000366707	human	ensembl	57_37b	+1	known	missense	c.3266	p.T1089M	0.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,HMMPfam_V-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	
OR51Q1	390061	genome.wustl.edu	37	11	5444328	5444328	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5444328	5444328	C	G	SNP	OR51Q1	NM_001004757	human	genbank	57_37b	+1	validated	missense	c.898	p.Q300E	1.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR5R1	219479	genome.wustl.edu	37	11	56185676	56185676	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56185676	56185676	T	C	SNP	OR5R1	NM_001004744	human	genbank	57_37b	-1	provisional	silent	c.33	p.V11	0.353	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PCDHB14	56122	genome.wustl.edu	37	5	140604455	140604455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140604455	140604455	G	A	SNP	PCDHB14	NM_018934	human	genbank	57_37b	+1	reviewed	missense	c.1378	p.V460I	0.000	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
PKD2L1	9033	genome.wustl.edu	37	10	102054793	102054793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102054793	102054793	C	T	SNP	PKD2L1	NM_016112	human	genbank	57_37b	-1	reviewed	missense	c.1444	p.V482I	0.495	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	-	no_errors
PKNOX2	63876	genome.wustl.edu	37	11	125280153	125280153	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125280153	125280153	T	C	SNP	PKNOX2	NM_022062	human	genbank	57_37b	+1	validated	missense	c.650	p.V217A	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
PRPF6	24148	genome.wustl.edu	37	20	62658961	62658961	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62658961	62658961	G	A	SNP	PRPF6	NM_012469	human	genbank	57_37b	+1	reviewed	silent	c.2211	p.K737	1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_HAT	HMMPfam_PRP1_N,HMMSmart_HAT,superfamily_SSF48452,HMMPfam_TPR_1	-	no_errors
PSG6	5675	genome.wustl.edu	37	19	43411997	43411997	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43411997	43411997	G	T	SNP	PSG6	NM_002782	human	genbank	57_37b	-1	provisional	missense	c.716	p.P239H	0.002	superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89717727	89717737	+	Frame_Shift_Del	DEL	GTGATATCAAA	GTGATATCAAA	-	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	GTGATATCAAA	GTGATATCAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89717727	89717737	GTGATATCAAA	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	frame_shift_del	c.752_762	p.D252fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89717610,89717776])	no_errors
RASA2	5922	genome.wustl.edu	37	3	141277776	141277776	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	141277776	141277776	G	T	SNP	RASA2	NM_006506	human	genbank	57_37b	+1	reviewed	nonsense	c.733	p.E245*	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK	-	no_errors
RBM6	10180	genome.wustl.edu	37	3	50005657	50005657	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50005657	50005657	C	A	SNP	RBM6	NM_005777	human	genbank	57_37b	+1	validated	missense	c.799	p.Q267K	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMSmart_ZnF_C2H2,HMMSmart_G_patch,HMMPfam_G-patch	-	no_errors
ROM1	6094	genome.wustl.edu	37	11	62381062	62381062	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62381062	62381062	G	T	SNP	ROM1	NM_000327	human	genbank	57_37b	+1	reviewed	silent	c.309	p.L103	0.931	NULL	HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1	-	no_errors
SLC22A3	6581	genome.wustl.edu	37	6	160858113	160858113	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160858113	160858113	G	A	SNP	SLC22A3	NM_021977	human	genbank	57_37b	+1	reviewed	silent	c.1158	p.S386	0.984	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
SLC4A7	9497	genome.wustl.edu	37	3	27418337	27418337	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	27418337	27418337	C	T	SNP	SLC4A7	NM_003615	human	genbank	57_37b	-1	validated	splice_site	c.3564-1	e25-1	1.000	-	-	-	no_errors
SNTG2	54221	genome.wustl.edu	37	2	1161295	1161295	+	Missense_Mutation	SNP	C	C	T	rs61744692	byCluster;byFrequency;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1161295	1161295	C	T	SNP	SNTG2	NM_018968	human	genbank	57_37b	+1	reviewed	missense	c.473	p.A158V	0.998	superfamily_PDZ domain-like	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	
SPANXD	64648	genome.wustl.edu	37	X	140786506	140786506	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	140786506	140786506	G	A	SNP	SPANXD	NM_032417	human	genbank	57_37b	-1	reviewed	silent	c.57	p.N19	0.016	HMMPfam_SPAN-X	HMMPfam_SPAN-X	-	no_errors
SPATA9	83890	genome.wustl.edu	37	5	95011246	95011246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	95011246	95011246	G	A	SNP	SPATA9	NM_031952	human	genbank	57_37b	-1	validated	missense	c.248	p.S83F	0.629	NULL	NULL	-	no_errors
TATDN3	128387	genome.wustl.edu	37	1	212985604	212985604	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	212985604	212985604	G	A	SNP	TATDN3	NM_001042552	human	genbank	57_37b	+1	validated	silent	c.615	p.V205	1.000	superfamily_Metallo-dependent hydrolases,HMMPfam_TatD_DNase	superfamily_Metallo-dependent hydrolases,HMMPfam_TatD_DNase	-	no_errors
TGFBRAP1	9392	genome.wustl.edu	37	2	105897089	105897089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	105897089	105897089	G	A	SNP	TGFBRAP1	NM_001142621	human	genbank	57_37b	-1	validated	missense	c.1213	p.H405Y	1.000	NULL	HMMPfam_Vps39_1,HMMPfam_Vps39_2	-	no_errors
TMCO6	55374	genome.wustl.edu	37	5	140022500	140022500	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140022500	140022500	C	T	SNP	TMCO6	ENST00000252100	human	ensembl	57_37b	+1	known	missense	c.698	p.S233F	0.990	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMSmart_ARM	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	rs28934574	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577094	7577094	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.844	p.R282W	0.997	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	
TST	7263	genome.wustl.edu	37	22	37407109	37407109	+	Missense_Mutation	SNP	G	G	C	rs11554714	byCluster;byFrequency;by1000genomes	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37407109	37407109	G	C	SNP	TST	NM_003312	human	genbank	57_37b	-1	reviewed	missense	c.853	p.P285A	0.997	HMMSmart_SM00450	superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese,PatternScan_RHODANESE_1,PatternScan_RHODANESE_2	-	
WDR70	55100	genome.wustl.edu	37	5	37605229	37605229	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	37605229	37605229	G	A	SNP	WDR70	NM_018034	human	genbank	57_37b	+1	provisional	silent	c.981	p.T327	0.185	superfamily_WD40_like,HMMSmart_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
XIRP1	165904	genome.wustl.edu	37	3	39226889	39226889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39226889	39226889	G	A	SNP	XIRP1	NM_194293	human	genbank	57_37b	-1	provisional	missense	c.4048	p.P1350S	0.000	NULL	HMMPfam_Xin	-	no_errors
ZFHX3	463	genome.wustl.edu	37	16	72984482	72984482	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72984482	72984482	G	A	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	silent	c.3102	p.I1034	0.985	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ZKSCAN2	342357	genome.wustl.edu	37	16	25266659	25266659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	25266659	25266659	C	T	SNP	ZKSCAN2	NM_001012981	human	genbank	57_37b	-1	validated	missense	c.454	p.V152M	0.013	HMMSmart_SM00431	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF780B	163131	genome.wustl.edu	37	19	40541078	40541078	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Z-01A-11D-A10Y-09	TCGA-E2-A14Z-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40541078	40541078	C	T	SNP	ZNF780B	NM_001005851	human	genbank	57_37b	-1	validated	missense	c.1688	p.G563E	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
