Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AMACR	23600	genome.wustl.edu	37	5	34008100	34008100	+	Missense_Mutation	SNP	C	C	T	rs3195676	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34008100	34008100	C	T	SNP	AMACR	NM_014324	human	genbank	57_37b	-1	reviewed	missense	c.25	p.V9M	0.000	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_CoA_transf_3	-	
ANKRD34C	390616	genome.wustl.edu	37	15	79586581	79586581	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79586581	79586581	A	-	DEL	ANKRD34C	XM_002343327	human	genbank	57_37b	+1	model	frame_shift_del	c.955	p.K319fs	0.811	NULL	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	(deletion:cds_exon[79585627,79587234])	no_errors
ANKRD52	0	genome.wustl.edu	37	12	56651611	56651611	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56651611	56651611	C	-	DEL	ANKRD52	NM_173595	human	genbank	57_37b	-1	validated	splice_site_del	c.111+1	e2+1	1.000	-	-	(deletion:intron[56651146,56651611])	no_errors
BCL9L	283149	genome.wustl.edu	37	11	118769652	118769652	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118769652	118769652	G	-	DEL	BCL9L	NM_182557	human	genbank	57_37b	-1	validated	frame_shift_del	c.3972	p.F1324fs	0.993	NULL	PatternScan_RIBOSOMAL_S6E	(deletion:cds_exon[118769124,118770217])	no_errors
C12orf51	283450	genome.wustl.edu	37	12	112657218	112657218	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112657218	112657218	G	-	DEL	C12orf51	NM_001109662	human	genbank	57_37b	-1	provisional	frame_shift_del	c.5780	p.P1927fs	1.000	NULL	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	(deletion:cds_exon[112657190,112657293])	no_errors
C17orf68	80169	genome.wustl.edu	37	17	8138378	8138378	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8138378	8138378	C	-	DEL	C17orf68	NM_025099	human	genbank	57_37b	-1	validated	frame_shift_del	c.1432	p.A478fs	0.871	NULL	NULL	(deletion:cds_exon[8138371,8138603])	no_errors
COL5A1	1289	genome.wustl.edu	37	9	137687132	137687132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	137687132	137687132	C	T	SNP	COL5A1	NM_000093	human	genbank	57_37b	+1	reviewed	missense	c.2770	p.R924W	0.985	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67670628	67670628	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67670628	67670628	G	T	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	nonsense	c.1873	p.E625*	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DAB2IP	153090	genome.wustl.edu	37	9	124522318	124522318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124522318	124522318	G	A	SNP	DAB2IP	NM_032552	human	genbank	57_37b	+1	validated	missense	c.686	p.G229D	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
DRD3	1814	genome.wustl.edu	37	3	113890710	113890710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113890710	113890710	C	T	SNP	DRD3	NM_000796	human	genbank	57_37b	-1	reviewed	missense	c.130	p.V44I	0.481	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
EFHA2	286097	genome.wustl.edu	37	8	16944521	16944521	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	16944521	16944521	G	C	SNP	EFHA2	NM_181723	human	genbank	57_37b	+1	validated	missense	c.826	p.D276H	1.000	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
EIF2C1	26523	genome.wustl.edu	37	1	36359982	36359982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36359982	36359982	G	A	SNP	EIF2C1	NM_012199	human	genbank	57_37b	+1	reviewed	missense	c.851	p.R284H	1.000	superfamily_PAZ domain,HMMPfam_PAZ	superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
ENSG00000186921	0	genome.wustl.edu	37	7	158415438	158415438	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	158415438	158415438	A	C	SNP	ENSG00000186921	ENST00000335132	human	ensembl	57_37b	-1	known	missense	c.234	p.N78K	0.837	NULL	NULL	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2658	2658	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	2658	2658	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000247765	0	genome.wustl.edu	37	15	21941476	21941476	+	RNA	SNP	T	T	A	rs4603520	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941476	21941476	T	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.002	-	-	-	
EXTL3	2137	genome.wustl.edu	37	8	28595139	28595139	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28595139	28595139	G	C	SNP	EXTL3	NM_001440	human	genbank	57_37b	+1	provisional	missense	c.2380	p.E794Q	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	-	no_errors
FAM83G	644815	genome.wustl.edu	37	17	18891586	18891586	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18891586	18891586	C	-	DEL	FAM83G	NM_001039999	human	genbank	57_37b	-1	validated	frame_shift_del	c.664	p.A222fs	1.000	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	(deletion:cds_exon[18891560,18891727])	no_errors
FANCD2	2177	genome.wustl.edu	37	3	10106486	10106486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10106486	10106486	C	T	SNP	FANCD2	NM_033084	human	genbank	57_37b	+1	reviewed	missense	c.2095	p.L699F	1.000	NULL	NULL	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240374531	240374531	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240374531	240374531	A	G	SNP	FMN2	NM_020066	human	genbank	57_37b	+1	validated	missense	c.4061	p.K1354R	1.000	HMMSmart_FH2,superfamily_FH2_actin_bd,HMMPfam_FH2	HMMSmart_FH2,HMMPfam_Drf_FH1,superfamily_FH2_actin_bd,HMMPfam_FH2	-	no_errors
FRY	10129	genome.wustl.edu	37	13	32869412	32869412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32869412	32869412	C	T	SNP	FRY	NM_023037	human	genbank	57_37b	+1	validated	missense	c.8857	p.R2953C	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
GALNT11	63917	genome.wustl.edu	37	7	151807732	151807732	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151807732	151807732	T	A	SNP	GALNT11	NM_022087	human	genbank	57_37b	+1	validated	splice_site	c.1080+2	e6+2	1.000	-	-	-	no_errors
GUCY2F	2986	genome.wustl.edu	37	X	108718516	108718516	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	108718516	108718516	C	A	SNP	GUCY2F	NM_001522	human	genbank	57_37b	-1	reviewed	missense	c.650	p.G217V	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
HAS3	3038	genome.wustl.edu	37	16	69148464	69148464	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69148464	69148464	C	-	DEL	HAS3	NM_005329	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.957	p.L320fs	1.000	superfamily_SSF53448	superfamily_SSF53448,HMMPfam_Glycos_transf_2	(deletion:cds_exon[69148246,69149169])	no_errors
HYOU1	10525	genome.wustl.edu	37	11	118925916	118925916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118925916	118925916	C	A	SNP	HYOU1	NM_001130991	human	genbank	57_37b	-1	reviewed	missense	c.400	p.V134L	0.999	superfamily_Actin-like ATPase domain,HMMPfam_HSP70	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	-	no_errors
INPP4B	8821	genome.wustl.edu	37	4	143226676	143226676	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	143226676	143226676	G	A	SNP	INPP4B	NM_001101669	human	genbank	57_37b	-1	reviewed	silent	c.438	p.G146	0.998	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
KIAA0922	23240	genome.wustl.edu	37	4	154471282	154471282	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	154471282	154471282	T	C	SNP	KIAA0922	NM_015196	human	genbank	57_37b	+1	validated	silent	c.297	p.D99	1.000	NULL	NULL	-	no_errors
LIF	3976	genome.wustl.edu	37	22	30639826	30639826	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30639826	30639826	G	A	SNP	LIF	ENST00000403987	human	ensembl	57_37b	-1	known	nonsense	c.244	p.R82*	0.000	NULL	NULL	-	no_errors
MADD	8567	genome.wustl.edu	37	11	47303974	47303974	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47303974	47303974	G	-	DEL	MADD	NM_003682	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1512	p.G505fs	1.000	HMMSmart_SM00801,HMMPfam_dDENN	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN	(deletion:cds_exon[47303932,47304167])	no_errors
MUC17	140453	genome.wustl.edu	37	7	100696339	100696339	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100696339	100696339	C	T	SNP	MUC17	NM_001040105	human	genbank	57_37b	+1	provisional	silent	c.13176	p.Y4392	0.038	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
NEB	4703	genome.wustl.edu	37	2	152394755	152394755	+	Missense_Mutation	SNP	G	G	A	rs115623365	by1000genomes	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152394755	152394755	G	A	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.15793	p.R5265C	1.000	HMMSmart_SM00227,HMMPfam_Nebulin	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	
NFATC2	4773	genome.wustl.edu	37	20	50048860	50048860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50048860	50048860	G	A	SNP	NFATC2	NM_173091	human	genbank	57_37b	-1	reviewed	silent	c.2466	p.C822	0.944	NULL	superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors
NTM	50863	genome.wustl.edu	37	11	132180029	132180029	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	132180029	132180029	A	-	DEL	NTM	NM_001144058	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.685	p.K229fs	0.998	superfamily_SSF48726	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig	(deletion:cds_exon[132180006,132180126])	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228444554	228444554	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228444554	228444554	G	A	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	silent	c.4512	p.A1504	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PALMD	54873	genome.wustl.edu	37	1	100154698	100154698	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	100154698	100154698	G	A	SNP	PALMD	NM_017734	human	genbank	57_37b	+1	validated	silent	c.882	p.L294	0.002	NULL	HMMPfam_Paralemmin	-	no_errors
PARD3	56288	genome.wustl.edu	37	10	34620061	34620061	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	34620061	34620061	A	T	SNP	PARD3	NM_019619	human	genbank	57_37b	-1	provisional	missense	c.2826	p.D942E	0.316	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors
PDCD1	5133	genome.wustl.edu	37	2	242793270	242793270	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242793270	242793270	G	A	SNP	PDCD1	NM_005018	human	genbank	57_37b	-1	reviewed	silent	c.807	p.D269	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_errors
PRPF39	55015	genome.wustl.edu	37	14	45566145	45566145	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	45566145	45566145	A	G	SNP	PRPF39	NM_017922	human	genbank	57_37b	+1	validated	missense	c.506	p.Y169C	1.000	superfamily_TPR-like,HMMSmart_SM00386	superfamily_TPR-like,HMMSmart_SM00386	-	no_errors
PSD2	84249	genome.wustl.edu	37	5	139202313	139202313	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	139202313	139202313	G	-	DEL	PSD2	NM_032289	human	genbank	57_37b	+1	provisional	frame_shift_del	c.1213	p.I406fs	1.000	HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain	HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	(deletion:cds_exon[139202311,139202369])	no_errors
PTPN5	84867	genome.wustl.edu	37	11	18765723	18765723	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18765723	18765723	C	-	DEL	PTPN5	NM_006906	human	genbank	57_37b	-1	validated	frame_shift_del	c.121	p.E41fs	0.975	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	(deletion:cds_exon[18765553,18765746])	no_errors
RETNLB	84666	genome.wustl.edu	37	3	108474726	108474726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108474726	108474726	C	T	SNP	RETNLB	NM_032579	human	genbank	57_37b	-1	validated	missense	c.235	p.G79S	1.000	HMMPfam_Resistin,superfamily_Resistin	HMMPfam_Resistin,superfamily_Resistin	-	no_errors
RGPD8	727851	genome.wustl.edu	37	2	113161599	113161599	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113161599	113161599	A	T	SNP	RGPD8	ENST00000302558	human	ensembl	57_37b	-1	known	missense	c.1220	p.I407N	0.992	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
SCN11A	11280	genome.wustl.edu	37	3	38938447	38938447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38938447	38938447	G	A	SNP	SCN11A	NM_014139	human	genbank	57_37b	-1	validated	silent	c.2292	p.I764	0.999	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50377366	50377366	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50377366	50377366	C	T	SNP	SHROOM4	NM_020717	human	genbank	57_37b	-1	reviewed	silent	c.1707	p.R569	0.000	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors
SYNE1	23345	genome.wustl.edu	37	6	152652696	152652696	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152652696	152652696	G	-	DEL	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.13124	p.P4375fs	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	(deletion:cds_exon[152650865,152653025])	no_errors
SYNM	23336	genome.wustl.edu	37	15	99672941	99672941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	99672941	99672941	C	T	SNP	SYNM	ENST00000336292	human	ensembl	57_37b	+1	known	missense	c.4373	p.S1458L	0.834	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
TBC1D10C	374403	genome.wustl.edu	37	11	67173127	67173127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67173127	67173127	G	A	SNP	TBC1D10C	NM_198517	human	genbank	57_37b	+1	provisional	missense	c.422	p.R141H	0.998	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	no_errors
THBS2	7058	genome.wustl.edu	37	6	169626380	169626380	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	169626380	169626380	T	C	SNP	THBS2	NM_003247	human	genbank	57_37b	-1	reviewed	silent	c.2433	p.E811	0.895	superfamily_SSF103647,HMMPfam_TSP_3	PatternScan_EGF_1,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_CA,HMMPfam_EGF,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,HMMPfam_TSP_C	-	no_errors
TMEM90A	646658	genome.wustl.edu	37	14	74876345	74876345	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74876345	74876345	G	-	DEL	TMEM90A	NM_001105579	human	genbank	57_37b	-1	validated	frame_shift_del	c.103	p.Q35fs	1.000	NULL	HMMPfam_CD225	(deletion:cds_exon[74876031,74876447])	no_errors
TNFAIP3	7128	genome.wustl.edu	37	6	138197170	138197170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	138197170	138197170	C	T	SNP	TNFAIP3	NM_006290	human	genbank	57_37b	+1	reviewed	silent	c.672	p.F224	0.655	HMMPfam_OTU	HMMPfam_OTU,HMMPfam_zf-A20,HMMSmart_ZnF_A20	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	17	7578203	7578203	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.646	p.V216M	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-
TRIP10	9322	genome.wustl.edu	37	19	6751229	6751229	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6751229	6751229	C	-	DEL	TRIP10	ENST00000420690	human	ensembl	57_37b	+1	known	frame_shift_del	c.1674	p.Q559fs	0.128	NULL	HMMPfam_FCH,HMMSmart_FCH	(deletion:cds_exon[6751045,6751337])	no_errors
UBR4	23352	genome.wustl.edu	37	1	19491831	19491831	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19491831	19491831	T	C	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	silent	c.4224	p.V1408	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
UGT1A6	54578	genome.wustl.edu	37	2	234601744	234601744	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234601744	234601744	G	T	SNP	UGT1A6	NM_001072	human	genbank	57_37b	+1	reviewed	missense	c.94	p.V32F	0.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
