Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
C20orf114	92747	genome.wustl.edu	37	20	31876681	31876681	+	Missense_Mutation	SNP	A	A	G	rs1078761	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31876681	31876681	A	G	SNP	C20orf114	NM_033197	human	genbank	57_37b	+1	reviewed	missense	c.250	p.I84V	0.002	HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI	HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI	-	
C6orf118	168090	genome.wustl.edu	37	6	165715615	165715615	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	165715615	165715615	G	T	SNP	C6orf118	NM_144980	human	genbank	57_37b	-1	validated	missense	c.196	p.P66T	0.953	NULL	NULL	-	no_errors
C7orf27	221927	genome.wustl.edu	37	7	2581594	2581594	+	Silent	SNP	G	G	A	rs34947605	byCluster;byFrequency;by1000genomes	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2581594	2581594	G	A	SNP	C7orf27	ENST00000396970	human	ensembl	57_37b	-1	known	silent	c.190	p.L64	0.000	NULL	NULL	-	
CASP8	841	genome.wustl.edu	37	2	202149683	202149683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	202149683	202149683	C	T	SNP	CASP8	NM_001080125	human	genbank	57_37b	+1	reviewed	missense	c.1124	p.S375F	0.897	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS	superfamily_DEATH domain,HMMSmart_SM00031,HMMPfam_DED,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors
CHD4	1108	genome.wustl.edu	37	12	6690307	6690307	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6690307	6690307	A	G	SNP	CHD4	NM_001273	human	genbank	57_37b	-1	reviewed	silent	c.4812	p.D1604	0.677	NULL	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
DHCR24	1718	genome.wustl.edu	37	1	55331007	55331007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55331007	55331007	C	T	SNP	DHCR24	NM_014762	human	genbank	57_37b	-1	reviewed	missense	c.989	p.R330H	1.000	NULL	superfamily_FAD-binding_2,HMMPfam_FAD_binding_4	-	no_errors
KIAA1688	80728	genome.wustl.edu	37	8	145806262	145806262	+	Silent	SNP	C	C	T	rs117042905	by1000genomes	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145806262	145806262	C	T	SNP	KIAA1688	NM_025251	human	genbank	57_37b	-1	validated	silent	c.480	p.A160	0.000	NULL	HMMSmart_SM00456,HMMPfam_WW,superfamily_WW domain,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	
LINGO1	84894	genome.wustl.edu	37	15	77907402	77907402	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77907402	77907402	C	T	SNP	LINGO1	NM_032808	human	genbank	57_37b	-1	validated	missense	c.847	p.V283I	0.996	superfamily_L domain-like,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
LOC442421	442421	genome.wustl.edu	37	9	66499856	66499856	+	RNA	SNP	G	G	T	rs112527673	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	66499856	66499856	G	T	SNP	LOC442421	NR_024496	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-	
PDE4A	5141	genome.wustl.edu	37	19	10570300	10570300	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10570300	10570300	C	G	SNP	PDE4A	NM_001111307	human	genbank	57_37b	+1	validated	missense	c.1230	p.I410M	1.000	superfamily_HD-domain/PDEase-like	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PHF21B	112885	genome.wustl.edu	37	22	45279150	45279150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45279150	45279150	C	T	SNP	PHF21B	NM_138415	human	genbank	57_37b	-1	validated	missense	c.1412	p.R471H	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237796915	237796915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237796915	237796915	G	A	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.6593	p.R2198H	1.000	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SPTBN5	51332	genome.wustl.edu	37	15	42158373	42158373	+	Missense_Mutation	SNP	G	G	A	rs56198158	byCluster;byFrequency;by1000genomes	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42158373	42158373	G	A	SNP	SPTBN5	NM_016642	human	genbank	57_37b	-1	validated	missense	c.6580	p.R2194W	0.054	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7574003	7574003	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.1024	p.R342*	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ZNF618	114991	genome.wustl.edu	37	9	116811102	116811102	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116811102	116811102	G	T	SNP	ZNF618	NM_133374	human	genbank	57_37b	+1	validated	missense	c.1241	p.G414V	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_hATC	-	no_errors
