Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA1522	57648	broad.mit.edu	37	1	33233411	33233411	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:33233411A>G	uc001bvv.2	+	2	218	c.82A>G	c.(82-84)AAA>GAA	p.K28E	KIAA1522_uc001bvu.1_Missense_Mutation_p.K87E|KIAA1522_uc010ohm.1_Missense_Mutation_p.K39E|KIAA1522_uc010ohn.1_Missense_Mutation_p.K28E	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	28											0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				TGAGAATGACAAACATCTAAG	0.602000													6	167	---	---	---	---	0	0	0.058154	0	0
SPAG17	200162	broad.mit.edu	37	1	118565931	118565931	+	Missense_Mutation	SNP	C	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:118565931C>G	uc001ehk.2	-	28	4133	c.4065G>C	c.(4063-4065)AAG>AAC	p.K1355N		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1355						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TGTTACCTTTCTTTGTGTTGG	0.363000													23	25	---	---	---	---	0	0	0.030593	0	0
ZNF692	55657	broad.mit.edu	37	1	249151529	249151529	+	Missense_Mutation	SNP	T	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:249151529T>G	uc001ifc.1	-	4	546	c.379A>C	c.(379-381)AGC>CGC	p.S127R	ZNF692_uc001iez.1_5'Flank|ZNF692_uc001ifa.1_5'UTR|ZNF692_uc001ifb.1_5'UTR|ZNF692_uc001ifd.1_Missense_Mutation_p.S127R|ZNF692_uc001ife.1_RNA|ZNF692_uc001iff.1_Missense_Mutation_p.S127R|ZNF692_uc010pzr.1_Missense_Mutation_p.S132R	NM_017865	NP_060335	Q9BU19	ZN692_HUMAN	zinc finger protein 692 isoform 2	127					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			GGTGTAGGGCTCAAAGAGGGT	0.637000													54	81	---	---	---	---	0	0	0.048971	0	0
YME1L1	10730	broad.mit.edu	37	10	27420862	27420862	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:27420862G>A	uc001iti.2	-	9	1137	c.955C>T	c.(955-957)CGG>TGG	p.R319W	YME1L1_uc001itj.2_Missense_Mutation_p.R262W|YME1L1_uc010qdl.1_Missense_Mutation_p.R229W|YME1L1_uc009xkv.2_RNA	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	319					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						GTTGTTGTCCGGAAGCGGACT	0.289000													3	85	---	---	---	---	0	0	0.009096	0	0
ZNF33B	7582	broad.mit.edu	37	10	43089114	43089114	+	Silent	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:43089114G>A	uc001jaf.1	-	5	1399	c.1284C>T	c.(1282-1284)CTC>CTT	p.L428L	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Silent_p.L316L|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	428	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GATGTTTAGTGAGGTCAGATT	0.418000													65	96	---	---	---	---	0	0	0.048971	0	0
HRAS	3265	broad.mit.edu	37	11	533875	533875	+	Missense_Mutation	SNP	G	T	T	rs28933406		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr11:533875G>T	uc001lpv.2	-	3	369	c.181C>A	c.(181-183)CAG>AAG	p.Q61K	HRAS_uc010qvw.1_Missense_Mutation_p.Q61K|HRAS_uc010qvx.1_Missense_Mutation_p.Q61K|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(91)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	TACTCCTCCTGGCCGGCGGTA	0.597000		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			73	118	---	---	---	---	9.24773e-40	1.05088e-39	0.048971	1	0
KLHL35	283212	broad.mit.edu	37	11	75134897	75134897	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr11:75134897G>A	uc001owm.1	-	5	961	c.742C>T	c.(742-744)CGG>TGG	p.R248W		NM_001039548	NP_001034637	Q6PF15	KLH35_HUMAN	kelch-like 35	248	Kelch 4.										0						AGGCTCCACCGGTCCTCCTTG	0.612000													3	28	---	---	---	---	0	0	0.004672	0	0
FAM76B	143684	broad.mit.edu	37	11	95522617	95522617	+	Missense_Mutation	SNP	C	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr11:95522617C>G	uc001pfn.2	-	1	338	c.26G>C	c.(25-27)TGC>TCC	p.C9S	CEP57_uc001pfo.1_5'Flank|CEP57_uc010ruh.1_5'Flank|CEP57_uc010rui.1_5'Flank|CEP57_uc009ywn.1_5'Flank|CEP57_uc001pfp.1_5'Flank|CEP57_uc001pfq.1_5'Flank|CEP57_uc001pfr.1_5'Flank|FAM76B_uc001pfm.2_RNA	NM_144664	NP_653265	Q5HYJ3	FA76B_HUMAN	hypothetical protein LOC143684	9											0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ACACTTGGTGCAGGCGTACAG	0.672000													5	24	---	---	---	---	0	0	0.029380	0	0
TRHDE	29953	broad.mit.edu	37	12	72667128	72667128	+	Silent	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr12:72667128G>A	uc001sxa.2	+	1	600	c.570G>A	c.(568-570)GAG>GAA	p.E190E	LOC283392_uc010stv.1_5'UTR	NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	190	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TGGCGGTGGAGAAAGTGCAGC	0.612000													4	105	---	---	---	---	0	0	0.014758	0	0
AKT1	207	broad.mit.edu	37	14	105242100	105242100	+	Silent	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr14:105242100G>A	uc001ypk.2	-	5	878	c.324C>T	c.(322-324)GAC>GAT	p.D108D	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.D108D|AKT1_uc010axa.2_Silent_p.D108D|AKT1_uc001ypm.2_Silent_p.D108D|AKT1_uc001ypn.2_Silent_p.D108D|AKT1_uc010tyk.1_Silent_p.D46D	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	108	PH.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	TCTTGAGGCCGTCAGCCACAG	0.617000		1	Mis		breast|colorectal|ovarian|NSCLC								4	117	---	---	---	---	0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	16	15457676	15457676	+	Silent	SNP	A	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr16:15457676A>G	uc010bvf.1	-	9	837	c.837T>C	c.(835-837)TCT>TCC	p.S279S						RecName: Full=NPIP-like protein 1;																		CGCTGAGGGTAGAGCTGAGGG	0.562000													5	240	---	---	---	---	0	0	0.038147	0	0
KRTAP4-4	84616	broad.mit.edu	37	17	39316834	39316834	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr17:39316834C>T	uc002hwc.2	-	1	150	c.110G>A	c.(109-111)CGC>CAC	p.R37H		NM_032524	NP_115913	Q9BYR3	KRA44_HUMAN	keratin associated protein 4.4	37	26 X 5 AA repeats of C-C-[GRQVCH]-[SPT]- [VSTQR].|4.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GCAGCTGGGGCGGCAGCAGGT	0.652000													5	184	---	---	---	---	0	0	0.021553	0	0
CREB3L3	84699	broad.mit.edu	37	19	4157169	4157169	+	Missense_Mutation	SNP	G	A	A	rs145839480	byFrequency	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:4157169G>A	uc002lzl.2	+	3	450	c.334G>A	c.(334-336)GGC>AGC	p.G112S	CREB3L3_uc002lzm.2_Missense_Mutation_p.G102S|CREB3L3_uc010xib.1_Missense_Mutation_p.G103S|CREB3L3_uc010xic.1_Missense_Mutation_p.G103S	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	112	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCCCCGCCGGCTGCCATCC	0.657000													6	125	---	---	---	---	0	0	0.029380	0	0
CD209	30835	broad.mit.edu	37	19	7810767	7810767	+	Missense_Mutation	SNP	G	A	A	rs146082308		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:7810767G>A	uc002mht.2	-	4	452	c.385C>T	c.(385-387)CGG>TGG	p.R129W	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.R105W|CD209_uc002mhr.2_Missense_Mutation_p.R105W|CD209_uc002mhs.2_Missense_Mutation_p.R105W|CD209_uc002mhu.2_Missense_Mutation_p.R129W|CD209_uc010dvq.2_Missense_Mutation_p.R129W|CD209_uc002mhq.2_Missense_Mutation_p.R129W|CD209_uc002mhv.2_Missense_Mutation_p.R105W|CD209_uc002mhx.2_Missense_Mutation_p.R85W|CD209_uc002mhw.2_Missense_Mutation_p.R85W|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	129	Extracellular (Probable).|2.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GCCTTCAGCCGGGTCAGCTCC	0.567000													7	245	---	---	---	---	0	0	0.069234	0	0
DNMT1	1786	broad.mit.edu	37	19	10249155	10249155	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:10249155C>T	uc002mng.2	-	34	4207	c.4027G>A	c.(4027-4029)GTG>ATG	p.V1343M	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Missense_Mutation_p.V267M|DNMT1_uc010xlc.1_Missense_Mutation_p.V1359M|DNMT1_uc002mnh.2_Missense_Mutation_p.V1238M|DNMT1_uc010xld.1_Missense_Mutation_p.V1343M	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1343	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	TCCACCACCACGCTCAGCTGG	0.642000													5	175	---	---	---	---	0	0	0.021553	0	0
ZNF443	10224	broad.mit.edu	37	19	12542199	12542199	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:12542199G>A	uc002mtu.2	-	4	985	c.787C>T	c.(787-789)CCT>TCT	p.P263S		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	263	C2H2-type 5.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGGAAAGGCTTTA	0.373000													5	251	---	---	---	---	0	0	0.021553	0	0
ZNF507	22847	broad.mit.edu	37	19	32844893	32844893	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:32844893G>A	uc002nte.2	+	3	1429	c.1157G>A	c.(1156-1158)AGC>AAC	p.S386N	ZNF507_uc002ntc.2_Missense_Mutation_p.S386N|ZNF507_uc010xrn.1_Missense_Mutation_p.S386N|ZNF507_uc002ntd.2_Missense_Mutation_p.S386N	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					AAAATCATCAGCAGCAGCCCC	0.458000													3	46	---	---	---	---	0	0	0.004672	0	0
ZNF211	10520	broad.mit.edu	37	19	58153415	58153415	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:58153415A>G	uc002qpq.2	+	3	1741	c.1561A>G	c.(1561-1563)AGT>GGT	p.S521G	ZNF211_uc010yhb.1_Missense_Mutation_p.S525G|ZNF211_uc002qpp.2_Missense_Mutation_p.S534G|ZNF211_uc002qpr.2_Missense_Mutation_p.S585G|ZNF211_uc002qps.2_Missense_Mutation_p.S586G|ZNF211_uc002qpt.2_Missense_Mutation_p.S533G|ZNF211_uc010yhc.1_Missense_Mutation_p.S533G|ZNF211_uc010yhd.1_Missense_Mutation_p.S460G|ZNF211_uc010yhe.1_Missense_Mutation_p.S512G	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	521	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTTTAGCCAAAGTTCTAGCCT	0.438000													6	156	---	---	---	---	0	0	0.029380	0	0
RGPD1	400966	broad.mit.edu	37	2	88125234	88125234	+	Silent	SNP	T	C	C			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr2:88125234T>C	uc010fhc.1	-	1	82	c.15A>G	c.(13-15)AAA>AAG	p.K5K		NM_001024457	NP_001019628	Q68DN6	RGPD1_HUMAN	RANBP2-like and GRIP domain containing 1	Error:Variant_position_missing_in_Q68DN6_after_alignment					intracellular transport		binding				0						CCCCGTAGGCTTTGCTGCGCC	0.592000													3	32	---	---	---	---	0	0	0.014758	0	0
GCC2	9648	broad.mit.edu	37	2	109087511	109087511	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr2:109087511A>T	uc002tec.2	+	6	1880	c.1726A>T	c.(1726-1728)AGT>TGT	p.S576C	GCC2_uc002ted.2_Missense_Mutation_p.S475C	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	576	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ACTTAGTCTCAGTCAAAGAGA	0.239000													14	15	---	---	---	---	0	0	0.024245	0	0
PI4KAP2	375133	broad.mit.edu	37	22	21829507	21829507	+	Missense_Mutation	SNP	G	A	A	rs140118179	by1000genomes	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr22:21829507G>A	uc002zuv.3	-	14	3895	c.1636C>T	c.(1636-1638)CTC>TTC	p.L546F	PI4KAP2_uc002zuw.2_Intron|PI4KAP2_uc011aid.1_Intron					SubName: Full=Putative uncharacterized protein PI4KA;												0						TACTTCAAGAGCTTGATTGTC	0.542000													8	5	---	---	---	---	0	0	0.047766	0	0
LOC220729	220729	broad.mit.edu	37	3	197348646	197348646	+	RNA	SNP	T	C	C	rs138265355	by1000genomes	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr3:197348646T>C	uc011bug.1	-	4		c.445A>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TGGGCCTGCCTGCCCTTTCCA	0.532000													6	107	---	---	---	---	0	0	0.038147	0	0
AMBN	258	broad.mit.edu	37	4	71465351	71465351	+	Missense_Mutation	SNP	T	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr4:71465351T>A	uc003hfl.2	+	5	357	c.282T>A	c.(280-282)CAT>CAA	p.H94Q		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	94					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			CAAGAGAACATGAAACTCAAC	0.383000													5	79	---	---	---	---	0	0	0.014758	0	0
FAM13A	10144	broad.mit.edu	37	4	89702434	89702434	+	Missense_Mutation	SNP	T	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr4:89702434T>A	uc003hse.1	-	11	1548	c.1340A>T	c.(1339-1341)CAG>CTG	p.Q447L	FAM13A_uc003hsb.1_Missense_Mutation_p.Q121L|FAM13A_uc003hsd.1_Missense_Mutation_p.Q121L|FAM13A_uc003hsc.1_Missense_Mutation_p.Q107L|FAM13A_uc011cdq.1_Missense_Mutation_p.Q93L|FAM13A_uc003hsf.1_Intron|FAM13A_uc003hsg.1_5'UTR|FAM13A_uc003hsh.1_Missense_Mutation_p.Q261L|FAM13A_uc010ikr.1_5'UTR	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	447					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TTCGACTTCCTGAGTATTCAA	0.358000													38	78	---	---	---	---	0	0	0.086207	0	0
MARCH1	55016	broad.mit.edu	37	4	164506962	164506962	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr4:164506962C>T	uc003iqs.1	-	6	1339	c.362G>A	c.(361-363)CGC>CAC	p.R121H	MARCH1_uc003iqr.1_Missense_Mutation_p.R104H	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	121	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CTCACAGCAGCGTGTATCTGA	0.527000													40	118	---	---	---	---	0	0	0.042209	0	0
NSD1	64324	broad.mit.edu	37	5	176636938	176636938	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr5:176636938A>G	uc003mfr.3	+	5	1676	c.1538A>G	c.(1537-1539)AAG>AGG	p.K513R	NSD1_uc003mft.3_Missense_Mutation_p.K244R|NSD1_uc003mfs.1_Missense_Mutation_p.K410R|NSD1_uc011dfx.1_Missense_Mutation_p.K161R	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	513					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		AGTGTGAAAAAGGGCCACATA	0.423000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			3	87	---	---	---	---	0	0	0.004672	0	0
PDLIM7	9260	broad.mit.edu	37	5	176919616	176919616	+	Silent	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr5:176919616G>A	uc003mhc.1	-	3	244	c.159C>T	c.(157-159)ATC>ATT	p.I53I	PDLIM7_uc003mha.1_5'Flank|PDLIM7_uc003mhb.1_Silent_p.I53I|PDLIM7_uc003mhd.1_5'UTR|PDLIM7_uc003mhe.1_RNA|PDLIM7_uc003mhf.2_Silent_p.I53I|PDLIM7_uc003mhg.1_Silent_p.I53I	NM_005451	NP_005442	Q9NR12	PDLI7_HUMAN	PDZ and LIM domain 7 isoform 1	53	PDZ.				cell differentiation|multicellular organismal development|ossification|receptor-mediated endocytosis	cytoplasm|focal adhesion	protein binding|zinc ion binding			breast(1)	1	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCTCGCCATCGATGCTCAGCA	0.652000													4	141	---	---	---	---	0	0	0.021553	0	0
COBL	23242	broad.mit.edu	37	7	51092971	51092971	+	Silent	SNP	C	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr7:51092971C>T	uc003tpr.3	-	12	3788	c.3603G>A	c.(3601-3603)CTG>CTA	p.L1201L	COBL_uc003tps.2_Intron|COBL_uc011kcl.1_Intron|COBL_uc003tpp.3_Silent_p.L987L|COBL_uc003tpq.3_Intron|COBL_uc003tpo.3_Silent_p.L743L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1201										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTGGTGGGGACAGAAGACCAA	0.627000													25	48	---	---	---	---	0	0	0.059317	0	0
DCAF13	25879	broad.mit.edu	37	8	104444914	104444914	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr8:104444914A>G	uc003yln.2	+	7	1463	c.1186A>G	c.(1186-1188)ATC>GTC	p.I396V	DCAF13_uc003ylm.1_Missense_Mutation_p.I129V|DCAF13_uc003ylo.2_Missense_Mutation_p.I107V	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	244	WD 5.				rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						AACAAATACAATCTGTTGGAA	0.299000													27	34	---	---	---	---	0	0	0.074837	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112705375	112705375	+	Silent	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr9:112705375G>A	uc004bei.2	+	7	1098	c.906G>A	c.(904-906)CCG>CCA	p.P302P	PALM2_uc004bef.2_Silent_p.P304P|PALM2_uc004beg.2_Silent_p.P270P|PALM2_uc004beh.3_Silent_p.P302P|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CTGCAGGGCCGGAGGCAAACT	0.502000													3	58	---	---	---	---	0	0	0.004672	0	0
OTUD6A	139562	broad.mit.edu	37	X	69283005	69283005	+	Missense_Mutation	SNP	G	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chrX:69283005G>T	uc004dxu.1	+	1	665	c.631G>T	c.(631-633)GTG>TTG	p.V211L		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	211	OTU.									lung(1)|skin(1)	2						CGACAACATCGTGCGCACCAC	0.612000													37	55	---	---	---	---	4.16155e-14	4.62394e-14	0.104719	1	0
MID2	11043	broad.mit.edu	37	X	107167660	107167660	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chrX:107167660G>A	uc004enl.2	+	8	2096	c.1523G>A	c.(1522-1524)CGC>CAC	p.R508H	MID2_uc004enk.2_Missense_Mutation_p.R478H	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	508	Fibronectin type-III.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						AGCGGGACTCGCTACATCTTC	0.458000													6	112	---	---	---	---	0	0	0.021553	0	0
ATP1B4	23439	broad.mit.edu	37	X	119500552	119500552	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chrX:119500552G>A	uc004esr.2	+	2	320	c.236G>A	c.(235-237)GGC>GAC	p.G79D	ATP1B4_uc004esq.2_Missense_Mutation_p.G79D|ATP1B4_uc011mtx.1_Intron|ATP1B4_uc011mty.1_Missense_Mutation_p.G79D	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	79	Nuclear (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						CAGCCAACAGGCAATGCCTGG	0.353000													42	48	---	---	---	---	0	0	0.048971	0	0
TMEM52	339456	broad.mit.edu	37	1	1850628	1850636	+	In_Frame_Del	DEL	AGCGGCAGG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:1850628_1850636delAGCGGCAGG	uc001aij.2	-	1	105_113	c.69_77delCCTGCCGCT	c.(67-78)CTCCTGCCGCTG>CTG	p.23_26LLPL>L	TMEM52_uc001aii.2_5'Flank	NM_178545	NP_848640	Q8NDY8	TMM52_HUMAN	transmembrane protein 52 precursor	23_26						integral to membrane					0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.82e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.75e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CACCTgcggcagcggcaggagcggcagga	0.569													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	4204666	4204667	+	IGR	DEL	CA	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:4204666_4204667delCA								LOC100133612 (370789 upstream) : LOC284661 (267444 downstream)																							ccaccaccatcacaccattatc	0.025													3	4	---	---	---	---					
NEXN	91624	broad.mit.edu	37	1	78390884	78390887	+	Frame_Shift_Del	DEL	AAAC	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:78390884_78390887delAAAC	uc001dic.3	+	6	756_759	c.459_462delAAAC	c.(457-462)ATAAACfs	p.I153fs	NEXN_uc001dia.3_Intron|NEXN_uc009wcb.1_Intron|NEXN_uc001dib.3_Frame_Shift_Del_p.I89fs|NEXN_uc001did.1_Intron|NEXN_uc001dif.1_Frame_Shift_Del_p.I45fs	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	153_154	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		TTGAGGACATAAACAATACGGGAA	0.289													8	142	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484633	121484633	+	IGR	DEL	T	-	-	rs4898120		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:121484633delT								LOC647121 (170947 upstream) : None (None downstream)																							agagtttaacttttcttttca	0.000													11	1400	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484805	121484805	+	IGR	DEL	C	-	-	rs1842867		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:121484805delC								LOC647121 (171119 upstream) : None (None downstream)																							gttgaacgttcccttagacag	0.000													9	1224	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121485007	121485007	+	IGR	DEL	T	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr1:121485007delT								LOC647121 (171321 upstream) : None (None downstream)																							aaacgctctgtttgtaaagtc	0.000													10	1001	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													11	74	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529391	42529391	+	IGR	DEL	G	-	-	rs71210893		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:42529391delG								None (None upstream) : LOC441666 (297924 downstream)																							attatatgaagaaatcccgtt	0.000													9	103	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599640	42599640	+	IGR	DEL	A	-	-	rs145203825		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:42599640delA								None (None upstream) : LOC441666 (227675 downstream)																							aatggaaatgaaaggagtcat	0.000													10	1308	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	91621153	91621155	+	IGR	DEL	CTC	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:91621153_91621155delCTC								KIF20B (86453 upstream) : HTR7 (879423 downstream)																							tcctcttccactcctcctcctcc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	91670639	91670641	+	IGR	DEL	CAG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:91670639_91670641delCAG								KIF20B (135939 upstream) : HTR7 (829937 downstream)																							ttccacgtgtcagcagcagcagc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	102483741	102483741	+	IGR	DEL	G	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr10:102483741delG								HIF1AN (170061 upstream) : PAX2 (21727 downstream)																							cccgcgaggtggggggcgggg	0.274													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	8172274	8172275	+	IGR	INS	-	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr12:8172274_8172275insG								SLC2A3 (83382 upstream) : FOXJ2 (13084 downstream)																							aaaggtggggcggggtgggggg	0.000													2	4	---	---	---	---					
PPTC7	160760	broad.mit.edu	37	12	111020740	111020742	+	In_Frame_Del	DEL	CGC	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr12:111020740_111020742delCGC	uc001trh.1	-	1	323_325	c.95_97delGCG	c.(94-99)GGCGAC>GAC	p.G32del		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	32	Gly-rich.						metal ion binding|phosphoprotein phosphatase activity				0						AGTCCGTAGTcgccgccgccgcc	0.611													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	114921168	114921168	+	IGR	DEL	A	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr13:114921168delA								RASA3 (23073 upstream) : CDC16 (79194 downstream)																							gtgggggtggagggtggggag	0.070													3	3	---	---	---	---					
ZNF839	55778	broad.mit.edu	37	14	102807889	102807890	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr14:102807889_102807890delGG	uc001ylo.2	+	8	2159_2160	c.1809_1810delGG	c.(1807-1812)CAGGTGfs	p.Q603fs	ZNF839_uc010awk.1_Frame_Shift_Del_p.Q719fs|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Intron|ZNF839_uc001ylr.2_Frame_Shift_Del_p.Q528fs|ZNF839_uc001yls.2_Frame_Shift_Del_p.Q220fs|ZNF839_uc001ylt.2_Frame_Shift_Del_p.Q193fs	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	603_604						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCCAGGCACAGGTGGCAGCGTT	0.589													7	11	---	---	---	---					
TMEM62	80021	broad.mit.edu	37	15	43446993	43446995	+	In_Frame_Del	DEL	CAG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr15:43446993_43446995delCAG	uc001zqr.2	+	9	1425_1427	c.1146_1148delCAG	c.(1144-1149)TACAGT>TAT	p.S384del	TMEM62_uc010bda.2_In_Frame_Del_p.S254del	NM_024956	NP_079232	Q0P6H9	TMM62_HUMAN	transmembrane protein 62	384						integral to membrane				ovary(1)|breast(1)	2		all_cancers(109;1.16e-10)|all_epithelial(112;2.01e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;4.23e-07)		CTAGAAACTACAGTAGTGGGACA	0.379													15	29	---	---	---	---					
HERC1	8925	broad.mit.edu	37	15	63901361	63901361	+	Frame_Shift_Del	DEL	G	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr15:63901361delG	uc002amp.2	-	78	14653	c.14505delC	c.(14503-14505)AACfs	p.N4835fs	HERC1_uc002amo.2_RNA	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4835	HECT.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						AGCGGCAGTTGTTGATGGCAT	0.602													20	24	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	77868705	77868707	+	IGR	DEL	AGG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr15:77868705_77868707delAGG								HMG20A (90762 upstream) : LINGO1 (36662 downstream)																							ggggaggagaaggaggaggaggg	0.379													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	92292623	92292624	+	IGR	INS	-	GTA	GTA			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr15:92292623_92292624insGTA								SV2B (453975 upstream) : SLCO3A1 (104314 downstream)																							aggtggagatggaggtggaggt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	98629747	98629749	+	IGR	DEL	GAG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr15:98629747_98629749delGAG								ARRDC4 (112680 upstream) : FAM169B (350642 downstream)																							ggaggaggaagaggaggaggagg	0.118													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	67518133	67518134	+	IGR	INS	-	CT	CT	rs147662438	by1000genomes	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr18:67518133_67518134insCT								DOK6 (2308 upstream) : CD226 (12061 downstream)																							tttctcttccCCGCCCCGGCCA	0.347													7	0	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732021	27732021	+	IGR	DEL	T	-	-	rs4115062		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:27732021delT								None (None upstream) : LOC148189 (549381 downstream)																							ttcagacctctttgaggcctt	0.000													8	1091	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732215	27732216	+	IGR	INS	-	C	C	rs74197760		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:27732215_27732216insC								None (None upstream) : LOC148189 (549186 downstream)																							agaaaaggaaatatcttcgtat	0.000													12	734	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736362	27736362	+	IGR	DEL	T	-	-	rs4395191		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:27736362delT								None (None upstream) : LOC148189 (545040 downstream)																							agagtttaacttttcttttca	0.000													9	56	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr19:27738491delT								None (None upstream) : LOC148189 (542911 downstream)																							tggaaacgggtttttttcatg	0.000													16	380	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	62737087	62737087	+	IGR	DEL	T	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr20:62737087delT								OPRL1 (5096 upstream) : NPBWR2 (97 downstream)																							tgggggggggtgggCCTGATG	0.119													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44756289	44756291	+	IGR	DEL	CAC	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr21:44756289_44756291delCAC								CRYAA (163376 upstream) : SIK1 (78107 downstream)																							ccaccaccatcaccaccaccaac	0.000													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	108842185	108842191	+	IGR	DEL	CCCTCTC	-	-	rs149969366	by1000genomes	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr3:108842185_108842191delCCCTCTC								MORC1 (5192 upstream) : C3orf66 (54821 downstream)																							cttccctcttccctctcccctctcccc	0.077													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49149330	49149339	+	IGR	DEL	ACTCGGGTTG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr4:49149330_49149339delACTCGGGTTG								CWH43 (85237 upstream) : None (None downstream)																							attccattccactcgggttgattccattcc	0.000													10	75	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	90516654	90516655	+	IGR	DEL	TG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr4:90516654_90516655delTG								GPRIN3 (287493 upstream) : SNCA (128596 downstream)																							cgtgtgtgtctgtgtgtgtgtg	0.272													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	105907920	105907922	+	IGR	DEL	GGA	-	-	rs138844228	by1000genomes	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr5:105907920_105907922delGGA								None (None upstream) : EFNA5 (804669 downstream)																							ggaggtggggggaggaggaggag	0.148													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	167920531	167920532	+	IGR	INS	-	G	G			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr6:167920531_167920532insG								TCP10 (122533 upstream) : C6orf123 (264689 downstream)																							tcccttctcctccctgtcccct	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	167920877	167920878	+	IGR	INS	-	T	T			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr6:167920877_167920878insT								TCP10 (122879 upstream) : C6orf123 (264343 downstream)																							ctcccttccccgtcccctctcc	0.000													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	22082224	22082225	+	IGR	DEL	AC	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr7:22082224_22082225delAC								CDCA7L (96682 upstream) : RAPGEF5 (75684 downstream)																							acacacacatacacacacacac	0.064													6	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61968823	61968824	+	IGR	DEL	AA	-	-	rs59062931		TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr7:61968823_61968824delAA								None (None upstream) : LOC643955 (782848 downstream)																							ccaacagtagaaagggaaatat	0.000													7	424	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	37416780	37416782	+	IGR	DEL	GGA	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr8:37416780_37416782delGGA								KCNU1 (623139 upstream) : ZNF703 (136519 downstream)																							aggctgaggtggaggaggaggag	0.030													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	111630559	111630560	+	IGR	INS	-	A	A	rs13258806	by1000genomes	TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr8:111630559_111630560insA								KCNV1 (642483 upstream) : None (None downstream)																							cctcctcccccactcctctttc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	122142745	122142747	+	IGR	DEL	CAC	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr8:122142745_122142747delCAC								SNTB1 (318436 upstream) : HAS2 (482524 downstream)																							TGGCAATTAAcaccaccaccacc	0.281													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	66486940	66486940	+	IGR	DEL	A	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chr9:66486940delA								FAM74A4 (992554 upstream) : LOC442421 (9530 downstream)																							CCCGCCCCCCAATACCTGCCC	0.731													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	6532851	6532853	+	IGR	DEL	TGG	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chrX:6532851_6532853delTGG								VCX3A (79692 upstream) : HDHD1A (434108 downstream)																							GGTGATAAGAtggtggtggtggt	0.365													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-E3-A3DZ-01A-11D-A20C-08	TCGA-E3-A3DZ-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6984bfc-843f-455c-8ac6-2a07a54ec978	881caa69-f9c1-409d-aed1-2f1646c6828e	g.chrY:13483364delT								None (None upstream) : None (None downstream)																							tctgtcacaattcccctttag	0.000													10	20	---	---	---	---					
