Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
C1orf127	148345	genome.wustl.edu	37	1	11024231	11024232	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377008	-1	known	p.S8fs	0.003:0.000	-	-	-	-	-	-	-	-	-	NULL
E2F2	1870	genome.wustl.edu	37	1	23836530	23836530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004091.2	-1	reviewed	p.E386K	0.999	30	0%	26	19.2%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
NUDC	10726	genome.wustl.edu	37	1	27272111	27272112	+	Frame_Shift_Ins	INS	-	-	CCAGCGACAGAAGT	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006600.2	+1	provisional	p.Q297fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
YTHDF2	51441	genome.wustl.edu	37	1	29069119	29069119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016258.2	+1	reviewed	p.S113C	1.000	131	0%	97	14.4%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40751680	40751680	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005857.3	+1	reviewed	p.V346	1.000	80	0%	67	14.9%	-	-	-	-	-	HMMPfam_Peptidase_M48
IFI44L	10964	genome.wustl.edu	37	1	79107236	79107236	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006820.2	+1	validated	p.L422	0.029	100	0%	111	16.2%	-	-	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94548970	94548970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.Q266E	1.000	73	0%	92	17.4%	-	-	benign(0.124)	tolerated(1)	neutral(0.010)	NULL
COL11A1	1301	genome.wustl.edu	37	1	103573654	103573654	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.L27	1.000	86	0%	87	12.6%	-	-	-	-	-	NULL
OAZ3	51686	genome.wustl.edu	37	1	151739764	151739764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016178.2	+1	reviewed	p.E98*	1.000	40	5%	62	21%	-	-	-	-	-	HMMPfam_ODC_AZ
OR10R2	343406	genome.wustl.edu	37	1	158449927	158449927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004472.1	+1	provisional	p.S87L	0.039	121	0%	169	18.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
METTL11B	149281	genome.wustl.edu	37	1	170136764	170136764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136107.1	+1	validated	p.R240G	1.000	37	0%	61	23%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF858,superfamily_SSF53335
C1orf9	51430	genome.wustl.edu	37	1	172579289	172579289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014283.3	+1	validated	p.L1219V	1.000	37	0%	63	28.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NFASC	23114	genome.wustl.edu	37	1	204937395	204937395	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.R253T	0.317	60	0%	45	17.8%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
WDR64	128025	genome.wustl.edu	37	1	241846829	241846830	+	Frame_Shift_Del	DEL	TG	TG	-	rs146648760	by1000genomes	TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000366552	+1	known	p.C215fs	0.992:0.804	-	-	-	-	-	-	-	-	-	superfamily_WD40 repeat-like
ABHD1	84696	genome.wustl.edu	37	2	27353156	27353156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032604.3	+1	reviewed	p.S293C	0.334	47	0%	60	11.7%	-	-	benign(0.015)	deleterious(0)	neutral(0.445)	PatternScan_UPF0017,superfamily_alpha/beta-Hydrolases
CDC42EP3	10602	genome.wustl.edu	37	2	37872990	37872990	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006449.3	-1	reviewed	p.L247	0.988	52	0%	69	39.1%	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39081249	39081249	+	Silent	SNP	T	T	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198963.1	-1	provisional	p.L659	0.010	88	0%	120	27.5%	-	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMEK2	57223	genome.wustl.edu	37	2	55805479	55805479	+	Splice_Site	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122964.1	-1	validated	e10-1	0.000	23	0%	50	16%	-	-	-	-	-	-
XPO1	7514	genome.wustl.edu	37	2	61726916	61726916	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003400.3	-1	reviewed	p.L174	0.997	59	1.7%	89	14.6%	-	-	-	-	-	HMMPfam_Xpo1,superfamily_ARM-type_fold
PCBP1	5093	genome.wustl.edu	37	2	70315518	70315518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006196.3	+1	reviewed	p.E215Q	1.000	22	0%	36	25%	-	-	benign(0.282)	tolerated(0.61)	neutral(0.090)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73829349	73829349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.R4050L	1.000	32	0%	45	24.4%	-	-	benign(0.096)	deleterious(0.02)	neutral(0.390)	NULL
GPAT2	150763	genome.wustl.edu	37	2	96689676	96689676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207328.2	-1	validated	p.E631Q	1.000	40	0%	53	17%	-	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
ACTR1B	10120	genome.wustl.edu	37	2	98275406	98275406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005735.3	-1	reviewed	p.E126K	1.000	30	0%	47	14.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
IL18RAP	8807	genome.wustl.edu	37	2	103063591	103063591	+	Silent	SNP	T	T	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003853.2	+1	reviewed	p.S378	0.000	25	0%	39	23.1%	-	-	-	-	-	NULL
PAX8	7849	genome.wustl.edu	37	2	114002194	114002194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003466.3	-1	reviewed	p.E67K	1.000	31	0%	50	14%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
CERS6	253782	genome.wustl.edu	37	2	169571606	169571606	+	Silent	SNP	T	T	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203463.1	+1	validated	p.L235	1.000	109	0%	132	11.4%	-	-	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
TTN	7273	genome.wustl.edu	37	2	179633488	179633488	+	Silent	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.L3025	1.000	161	0%	155	15.5%	-	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
PMS1	5378	genome.wustl.edu	37	2	190719148	190719148	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000534.4	+1	reviewed	p.D384H	1.000	54	0%	64	18.8%	-	-	benign(0.129)	tolerated(0.19)	neutral(0.060)	NULL
IDH1	3417	genome.wustl.edu	37	2	209113233	209113233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005896.2	-1	reviewed	p.W92R	1.000	93	0%	109	16.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
RAF1	5894	genome.wustl.edu	37	3	12626106	12626106	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002880.3	-1	reviewed	p.R618	1.000	66	0%	70	11.4%	-	-	-	-	-	NULL
RPL15	6138	genome.wustl.edu	37	3	23960716	23960716	+	Silent	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002948.2	+1	reviewed	p.L113	1.000	97	0%	78	19.2%	-	-	-	-	-	HMMPfam_Ribosomal_L15e,superfamily_Ribosomal proteins L23 and L15e
CLASP2	23122	genome.wustl.edu	37	3	33661093	33661093	+	Splice_Site	SNP	A	A	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	e12+2	1.000	52	0%	65	23.1%	-	-	-	-	-	-
ZBTB47	92999	genome.wustl.edu	37	3	42701258	42701258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145166.3	+1	validated	p.R95C	1.000	20	0%	22	18.2%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_ZnF_C2H2
ZNF662	389114	genome.wustl.edu	37	3	42956077	42956077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134656.1	+1	validated	p.G197E	0.211	44	0%	43	14%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
SETD2	29072	genome.wustl.edu	37	3	47158212	47158212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.R1496Q	1.000	63	0%	87	16.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00570,superfamily_SET domain
EPHA3	2042	genome.wustl.edu	37	3	89480425	89480425	+	Silent	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005233.5	+1	reviewed	p.I754	1.000	99	0%	70	18.6%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
MYH15	22989	genome.wustl.edu	37	3	108124234	108124234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.E1583K	0.999	49	0%	65	24.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Myosin_tail_1
PARP14	54625	genome.wustl.edu	37	3	122437230	122437230	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017554.2	+1	validated	p.S1411C	0.004	83	0%	95	12.6%	-	-	possibly_damaging(0.876)	deleterious(0.05)	deleterious(0.686)	NULL
TPRA1	131601	genome.wustl.edu	37	3	127298641	127298641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016372.2	-1	validated	p.S67C	0.003	46	0%	56	10.7%	-	-	possibly_damaging(0.719)	tolerated(0.19)	neutral(0.310)	HMMPfam_Tmemb_40
ATP2C1	27032	genome.wustl.edu	37	3	130673919	130673919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001486.1	+1	reviewed	p.E251*	1.000	77	0%	109	12.8%	-	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
AGTR1	185	genome.wustl.edu	37	3	148459240	148459240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000685.4	+1	reviewed	p.R140C	1.000	33	0%	43	62.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYNN	55892	genome.wustl.edu	37	3	169501296	169501296	+	Silent	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018657.3	+1	provisional	p.G477	1.000	73	0%	131	12.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PHC3	80012	genome.wustl.edu	37	3	169863296	169863296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.P196L	1.000	29	0%	39	64.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E545K	1.000	71	0%	120	20%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
PIK3CA	5290	genome.wustl.edu	37	3	178951920	178951920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R992P	1.000	61	0%	129	10.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
RTP4	64108	genome.wustl.edu	37	3	187088743	187088743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022147.2	+1	validated	p.S108L	0.000	46	0%	92	59.8%	-	-	benign(0.123)	tolerated(0.22)	neutral(0.052)	NULL
LSG1	55341	genome.wustl.edu	37	3	194371889	194371889	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018385.2	-1	reviewed	p.K410N	1.000	116	0%	213	10.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MMR_HSR1,superfamily_SSF52540
TECRL	253017	genome.wustl.edu	37	4	65188424	65188424	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010874.4	-1	validated	p.Q140E	0.884	46	0%	54	11.1%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
ABCG2	9429	genome.wustl.edu	37	4	89028404	89028404	+	Silent	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004827.2	-1	reviewed	p.V403	0.000	91	0%	77	14.3%	-	-	-	-	-	HMMPfam_ABC2_membrane
FAM190A	401145	genome.wustl.edu	37	4	91321244	91321244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145065.1	+1	validated	p.L523V	1.000	195	0%	194	19.6%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
SMARCAD1	56916	genome.wustl.edu	37	4	95201785	95201785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128429.1	+1	validated	p.D823H	1.000	52	0%	65	12.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKRD50	57182	genome.wustl.edu	37	4	125590426	125590426	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.Q1336*	0.919	87	0%	96	15.6%	-	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126412142	126412142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.H4722R	1.000	48	0%	45	20%	-	-	possibly_damaging(0.545)	tolerated(0.32)	neutral(0.209)	NULL
EDNRA	1909	genome.wustl.edu	37	4	148461072	148461072	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001957.3	+1	reviewed	p.E335V	1.000	91	0%	129	18.6%	-	-	possibly_damaging(0.913)	tolerated(0.05)	deleterious(0.710)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FBXW7	55294	genome.wustl.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	C	rs149680468		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R505G	1.000	69	0%	65	27.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
IPO11	51194	genome.wustl.edu	37	5	61789870	61789870	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134779.1	+1	validated	p.W543C	1.000	86	0%	90	24.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
BDP1	55814	genome.wustl.edu	37	5	70805967	70805968	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.S1018fs	0.055:0.005	-	-	-	-	-	-	-	-	-	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102537275	102537275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015216.2	+1	provisional	p.K1203N	0.737	80	0%	101	18.8%	-	-	benign(0.378)	tolerated(0.32)	neutral(0.144)	NULL
CCDC112	153733	genome.wustl.edu	37	5	114610960	114610960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040440.2	-1	validated	p.E291Q	1.000	58	0%	65	15.4%	-	-	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130771870	130771870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308008	-1	known	p.R1317T	1.000	129	0%	162	13%	-	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140736934	140736934	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.R723G	0.068	59	0%	71	25.4%	-	-	-	-	-	NULL
PDLIM7	9260	genome.wustl.edu	37	5	176910898	176910898	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005451.3	-1	reviewed	p.F419	1.000	18	0%	42	21.4%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HIST1H4L	8368	genome.wustl.edu	37	6	27841160	27841160	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003546.2	-1	reviewed	p.G43	0.499	75	0%	58	17.2%	-	-	-	-	-	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
HIST1H4L	8368	genome.wustl.edu	37	6	27841161	27841161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003546.2	-1	reviewed	p.G43D	0.999	79	0%	61	18%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
ZNF165	7718	genome.wustl.edu	37	6	28056946	28056946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003447.3	+1	reviewed	p.D386H	0.002	36	0%	28	17.9%	-	-	probably_damaging(1)	tolerated(0.61)	deleterious(0.504)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VWA7	80737	genome.wustl.edu	37	6	31740763	31740764	+	Frame_Shift_Ins	INS	-	-	CAGGCTCCATGGGG	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025258.2	-1	validated	p.V352fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMSmart_VWA,superfamily_SSF53300
VPS52	6293	genome.wustl.edu	37	6	33235094	33235094	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022553.4	-1	reviewed	p.F332	1.000	36	0%	60	40%	-	-	-	-	-	HMMPfam_Vps52
TINAG	27283	genome.wustl.edu	37	6	54214694	54214694	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014464.3	+1	validated	p.N360	0.996	44	0%	56	37.5%	-	-	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
EYS	346007	genome.wustl.edu	37	6	65655790	65655791	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.L760fs	0.420:0.766	-	-	-	-	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
KIAA1009	22832	genome.wustl.edu	37	6	84884529	84884529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014895.2	-1	validated	p.E648Q	0.967	90	0%	153	14.4%	-	-	probably_damaging(0.991)	tolerated(0.19)	deleterious(0.493)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969854	87969854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.L2169F	0.758	41	0%	68	10.3%	-	-	benign(0.03)	deleterious(0.03)	neutral(0.366)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128718779	128718779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135648.1	-1	validated	p.Y52F	1.000	73	0%	88	20.5%	-	-	benign(0.132)	tolerated(0.68)	neutral(0.013)	HMMPfam_MAM,HMMSmart_MAM
THSD7A	221981	genome.wustl.edu	37	7	11452406	11452406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.R1187W	0.995	80	0%	53	20.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NEUROD6	63974	genome.wustl.edu	37	7	31378675	31378675	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022728.2	-1	provisional	p.E70*	1.000	253	0.4%	195	17.4%	-	-	-	-	-	NULL
C7orf72	100130988	genome.wustl.edu	37	7	50135754	50135754	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000297001	+1	known	p.E25Q	0.005	34	0%	40	27.5%	-	-	benign(0.143)	deleterious(0)	neutral(0.457)	NULL
SEPT14	346288	genome.wustl.edu	37	7	55874797	55874797	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207366.2	-1	validated	p.N324fs	0.980	-	-	-	-	-	-	-	-	-	NULL
ENSG00000230583	0	genome.wustl.edu	37	7	66296274	66296275	+	Splice_Site	DEL	TG	TG	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457166	-1	known	NULL	0.784	-	-	-	-	-	-	-	-	-	-
PCLO	27445	genome.wustl.edu	37	7	82578863	82578863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.D3681H	1.000	48	0%	45	20%	-	-	probably_damaging(1)	-	-	NULL
LMTK2	22853	genome.wustl.edu	37	7	97823757	97823757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014916.3	+1	reviewed	p.G1327V	0.898	24	0%	19	36.8%	-	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
MUC12	10071	genome.wustl.edu	37	7	100634368	100634368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.T318M	0.001	114	0%	73	16.4%	-	-	probably_damaging(0.995)	-	-	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100841996	100841996	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178176.2	-1	provisional	p.S135C	1.000	37	0%	33	15.2%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_DAGAT
LAMB1	3912	genome.wustl.edu	37	7	107566780	107566780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.E1638K	1.000	83	0%	60	18.3%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_Prefoldin
GRM8	2918	genome.wustl.edu	37	7	126542725	126542725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000845.2	-1	reviewed	p.R343G	1.000	100	0%	83	16.9%	-	-	possibly_damaging(0.624)	tolerated(0.06)	deleterious(0.540)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
MTMR9	66036	genome.wustl.edu	37	8	11174379	11174379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015458.3	+1	reviewed	p.F437L	1.000	36	0%	51	19.6%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_SSF52799
LGI3	203190	genome.wustl.edu	37	8	22009122	22009122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139278.2	-1	validated	p.E237*	1.000	22	0%	33	27.3%	-	-	-	-	-	HMMPfam_EPTP
DOCK5	80005	genome.wustl.edu	37	8	25158158	25158158	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.L277	0.504	100	0%	87	11.5%	-	-	-	-	-	NULL
DOCK5	80005	genome.wustl.edu	37	8	25234932	25234932	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.K1310*	1.000	72	0%	81	19.8%	-	-	-	-	-	NULL
FNTA	2339	genome.wustl.edu	37	8	42927374	42927374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002027.2	+1	reviewed	p.L186R	1.000	92	0%	120	10%	-	-	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	HMMPfam_PPTA,superfamily_Protein prenylyltransferase
DECR1	1666	genome.wustl.edu	37	8	91054966	91054966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001359.1	+1	reviewed	p.A226S	1.000	191	0%	190	12.1%	-	-	unknown(0)	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
RIMS2	9699	genome.wustl.edu	37	8	104943608	104943608	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.L788V	1.000	44	0%	56	21.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TNFRSF11B	4982	genome.wustl.edu	37	8	119941044	119941044	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002546.3	-1	reviewed	p.Q175H	0.316	133	0%	135	11.9%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00208
KIAA0196	9897	genome.wustl.edu	37	8	126075826	126075826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014846.3	-1	reviewed	p.R449Q	1.000	98	0%	110	16.4%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Strumpellin
PTPRD	5789	genome.wustl.edu	37	9	8341902	8341902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.D1580H	1.000	82	0%	101	14.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
C9orf93	203238	genome.wustl.edu	37	9	15874670	15874670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432954	+1	known	p.S257C	1.000	47	0%	49	14.3%	-	-	-	-	-	NULL
FAM154A	158297	genome.wustl.edu	37	9	18928772	18928772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153707.1	-1	predicted	p.E235K	1.000	81	0%	57	21.1%	-	-	possibly_damaging(0.833)	tolerated(0.06)	deleterious(0.640)	NULL
ANP32B	10541	genome.wustl.edu	37	9	100773561	100773578	+	In_Frame_Del	DEL	GATGAGGAAGACGAGGAC	GATGAGGAAGACGAGGAC	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	GATGAGGAAGACGAGGAC	GATGAGGAAGACGAGGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006401.2	+1	validated	p.EDEDDE178in_frame_del	1.000:1.000:1.000:1.000:0.996:0.944:0.946:0.888:0.122:0.147:0.144:0.049:0.551:0.579:0.564:0.900:0.919:0.913	-	-	-	-	-	-	-	-	-	NULL
RNF20	56254	genome.wustl.edu	37	9	104319831	104319831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.E779*	1.000	58	0%	41	29.3%	-	-	-	-	-	NULL
KIF12	113220	genome.wustl.edu	37	9	116861260	116861261	+	Frame_Shift_Ins	INS	-	-	CGACGCAGCTCGGCCGCGCTCATGGGACGTACCCTGGGGTA	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000259410	-1	known	p.G43fs	0.948:0.926	-	-	-	-	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
TUBB8	347688	genome.wustl.edu	37	10	94052	94052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177987.2	-1	validated	p.Q94E	1.000	73	0%	54	13%	-	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
ITGA8	8516	genome.wustl.edu	37	10	15646326	15646326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.E667Q	1.000	125	0%	92	15.2%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ENSG00000230425	0	genome.wustl.edu	37	10	43232152	43232152	+	Missense_Mutation	SNP	T	T	A	rs188536361	by1000genomes	TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453416	+1	known	p.S86T	1.000	43	0%	64	18.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CSGALNACT2	55454	genome.wustl.edu	37	10	43654302	43654302	+	Silent	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018590.3	+1	provisional	p.I267	0.307	53	0%	68	11.8%	-	-	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
FRMPD2	143162	genome.wustl.edu	37	10	49440297	49440297	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018071.3	-1	reviewed	p.D343	0.960	52	0%	47	27.7%	-	-	-	-	-	HMMSmart_SM00295,superfamily_Ubiquitin-like
PCDH15	65217	genome.wustl.edu	37	10	55582601	55582601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.E1636*	0.006	109	0%	127	23.6%	-	-	-	-	-	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64957238	64957238	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327520	-1	known	p.S406F	0.999	94	0%	99	14.1%	-	-	-	-	-	NULL
USP54	159195	genome.wustl.edu	37	10	75296056	75296056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.S372I	1.000	54	0%	43	18.6%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	superfamily_Cysteine proteinases
POLR3A	11128	genome.wustl.edu	37	10	79781631	79781631	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007055.3	-1	validated	p.L345	0.999	41	0%	52	23.1%	-	-	-	-	-	HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
PLCE1	51196	genome.wustl.edu	37	10	95993911	95993911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.E686*	1.000	95	0%	96	17.7%	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
C11orf16	56673	genome.wustl.edu	37	11	8948496	8948496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020643.2	-1	validated	p.P184T	0.000	43	0%	37	21.6%	-	-	benign(0.244)	tolerated(0.47)	neutral(0.036)	NULL
IPO7	10527	genome.wustl.edu	37	11	9451265	9451265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006391.2	+1	reviewed	p.L546V	1.000	42	0%	26	15.4%	-	-	possibly_damaging(0.683)	deleterious(0.03)	deleterious(0.608)	superfamily_ARM-type_fold
SBF2	81846	genome.wustl.edu	37	11	9871668	9871668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.G903A	1.000	56	0%	45	15.6%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
SOX6	55553	genome.wustl.edu	37	11	16077328	16077328	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033326.3	-1	reviewed	p.K407N	1.000	140	0%	106	21.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC1A2	6506	genome.wustl.edu	37	11	35323077	35323077	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004171.3	-1	reviewed	p.I282	1.000	75	0%	64	18.8%	-	-	-	-	-	HMMPfam_SDF
MYBPC3	4607	genome.wustl.edu	37	11	47364404	47364404	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000256.3	-1	reviewed	p.S478	0.002	96	0%	65	27.7%	-	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
LOC100289572	100289572	genome.wustl.edu	37	11	47470388	47470388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343082.1	+1	model	p.E165K	1.000	53	0%	51	17.6%	-	-	-	-	-	NULL
LOC283116	283116	genome.wustl.edu	37	11	49055899	49055899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_208043.4	+1	model	p.C237G	0.014	197	0%	202	11.4%	-	-	benign(0.086)	deleterious(0.05)	neutral(0.352)	NULL
SLC25A45	283130	genome.wustl.edu	37	11	65143859	65143859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000332723	-1	known	p.A270V	0.000	38	0%	54	42.6%	-	-	-	-	-	NULL
SLC25A45	283130	genome.wustl.edu	37	11	65146963	65146963	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182556.2	-1	validated	p.G75R	1.000	59	0%	64	29.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
CATSPER1	117144	genome.wustl.edu	37	11	65793355	65793355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.V166M	0.001	58	1.7%	54	40.7%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70176387	70176387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003626.2	+1	reviewed	p.E347Q	1.000	40	0%	34	11.8%	-	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
SHANK2	22941	genome.wustl.edu	37	11	70331887	70331888	+	In_Frame_Ins	INS	-	-	GGTGGT	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012309.3	-1	reviewed	p.909in_frame_insHH	1.000:0.989	-	-	-	-	-	-	-	-	-	NULL
ARHGEF17	9828	genome.wustl.edu	37	11	73020375	73020376	+	In_Frame_Ins	INS	-	-	CTC	rs79815384		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014786.3	+1	validated	p.235in_frame_insS	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
CCDC83	220047	genome.wustl.edu	37	11	85630449	85630449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173556.3	+1	provisional	p.M411L	1.000	64	0%	92	18.5%	-	-	benign(0.055)	tolerated(0.1)	neutral(0.290)	NULL
APOA5	116519	genome.wustl.edu	37	11	116660888	116660888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052968.4	-1	reviewed	p.H353D	0.017	69	0%	43	16.3%	-	-	benign(0.062)	tolerated(0.83)	neutral(0.005)	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126870373	126870373	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032531.3	-1	reviewed	p.V11	0.898	36	0%	37	16.2%	-	-	-	-	-	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128842887	128842890	+	Frame_Shift_Del	DEL	ATAA	ATAA	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	ATAA	ATAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.S1158fs	0.233:0.004:0.004:0.000	-	-	-	-	-	-	-	-	-	NULL
CD9	928	genome.wustl.edu	37	12	6346943	6346943	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001769.2	+1	reviewed	p.I212	1.000	93	0%	132	12.1%	-	-	-	-	-	HMMPfam_Tetraspannin
TAS2R46	259292	genome.wustl.edu	37	12	11214482	11214482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176887.2	-1	validated	p.L138I	0.000	79	0%	92	26.1%	-	-	benign(0.193)	tolerated(0.26)	neutral(0.052)	HMMPfam_TAS2R,superfamily_SSF81321
MLL2	8085	genome.wustl.edu	37	12	49427116	49427116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.S3791Y	1.000	30	0%	71	11.3%	-	-	unknown(0)	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50744365	50744365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145475.1	-1	provisional	p.D2084H	0.001	111	0%	167	10.2%	-	-	benign(0.139)	tolerated(0.16)	neutral(0.071)	NULL
C12orf51	283450	genome.wustl.edu	37	12	112613637	112613637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.E3411Q	1.000	30	0%	38	23.7%	-	-	benign(0.304)	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120196453	120196453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.E783K	1.000	67	0%	57	12.3%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
LRRC43	254050	genome.wustl.edu	37	12	122676112	122676112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098519.1	+1	validated	p.E363K	0.991	36	0%	35	40%	-	-	possibly_damaging(0.478)	tolerated(0.37)	neutral(0.177)	NULL
INTS6	26512	genome.wustl.edu	37	13	51957486	51957486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012141.2	-1	reviewed	p.P387A	1.000	69	0%	78	12.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77641765	77641765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.V4098M	1.000	82	0%	84	15.5%	-	-	benign(0.044)	tolerated(0.13)	neutral(0.255)	NULL
RBM26	64062	genome.wustl.edu	37	13	79940204	79940204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022118.3	-1	validated	p.S421C	1.000	62	0%	77	11.7%	-	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
OR11G2	390439	genome.wustl.edu	37	14	20665670	20665670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005503.1	+1	provisional	p.R59T	0.016	54	0%	48	14.6%	-	-	benign(0.258)	tolerated(0.1)	neutral(0.314)	superfamily_SSF81321
NFATC4	4776	genome.wustl.edu	37	14	24843125	24843126	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424781	+1	known	p.C575fs	0.091:0.104	-	-	-	-	-	-	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71576242	71576242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.G2273E	0.291	55	0%	59	18.6%	-	-	possibly_damaging(0.824)	tolerated(0.95)	neutral(0.312)	NULL
ACOT6	641372	genome.wustl.edu	37	14	74085983	74085983	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037162.1	+1	validated	p.D22H	1.000	58	0%	61	14.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_BAAT_C,superfamily_SSF53474
FOXN3	1112	genome.wustl.edu	37	14	89817038	89817038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085471.1	-1	reviewed	p.T220A	1.000	123	0%	113	13.3%	-	-	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92600399	92600399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017437.1	+1	validated	p.P65L	0.999	88	0%	97	19.6%	-	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_Lactamase_B,superfamily_Metallo-hydrolase/oxidoreductase
AHNAK2	113146	genome.wustl.edu	37	14	105419296	105419296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.S831T	0.894	92	0%	104	17.3%	-	-	benign(0.187)	tolerated(0.41)	neutral(0.033)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105420164	105420164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.E542Q	0.000	75	0%	83	12%	-	-	possibly_damaging(0.741)	-	-	NULL
IGHV4-34	28395	genome.wustl.edu	37	14	106829867	106829867	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390616	-1	known	p.Q32	0.997	77	0%	79	16.5%	-	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
RYR3	6263	genome.wustl.edu	37	15	33954714	33954714	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.L1661	0.949	50	0%	48	22.9%	-	-	-	-	-	NULL
AQR	9716	genome.wustl.edu	37	15	35222539	35222539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.E312K	1.000	84	0%	67	14.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUSAP1	51203	genome.wustl.edu	37	15	41643291	41643291	+	Missense_Mutation	SNP	G	G	C	rs189325557	by1000genomes	TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016359.3	+1	validated	p.D138H	0.000	53	0%	50	20%	-	-	possibly_damaging(0.819)	tolerated(0.13)	deleterious(0.562)	NULL
SPG11	80208	genome.wustl.edu	37	15	44925826	44925826	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.E538*	1.000	48	0%	42	11.9%	-	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54792332	54792332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.E1706K	1.000	77	0%	80	33.8%	-	-	benign(0.271)	tolerated(0.09)	neutral(0.326)	NULL
ANKRD34C	390616	genome.wustl.edu	37	15	79587012	79587012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343327.1	+1	model	p.F462L	1.000	51	0%	44	22.7%	-	-	benign(0.242)	deleterious(0.04)	neutral(0.373)	NULL
WHAMM	123720	genome.wustl.edu	37	15	83499382	83499382	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080435.1	+1	provisional	p.S558C	0.001	20	0%	19	21.1%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
SLC28A1	9154	genome.wustl.edu	37	15	85461778	85461778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004213.3	+1	validated	p.F273L	1.000	104	0%	65	10.8%	-	-	benign(0.308)	deleterious(0)	deleterious(0.540)	HMMPfam_Gate
IQGAP1	8826	genome.wustl.edu	37	15	91017725	91017725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.E862Q	1.000	35	0%	31	19.4%	-	-	benign(0.01)	tolerated(0.4)	neutral(0.017)	NULL
TTC23	64927	genome.wustl.edu	37	15	99679551	99679551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434594	-1	known	p.P210R	1.000	28	0%	37	18.9%	-	-	unknown(0)	-	-	NULL
LMF1	64788	genome.wustl.edu	37	16	919904	919904	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022773.2	-1	reviewed	p.L465	0.956	44	0%	44	25%	-	-	-	-	-	HMMPfam_DUF1222
DNAH3	55567	genome.wustl.edu	37	16	21110065	21110065	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.E798Q	1.000	77	0%	86	11.6%	-	-	benign(0.014)	tolerated(0.44)	neutral(0.013)	NULL
ERN2	10595	genome.wustl.edu	37	16	23711909	23711909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033266.3	-1	validated	p.K540N	0.017	32	0%	44	20.5%	-	-	benign(0.141)	tolerated(0.12)	neutral(0.273)	NULL
ZNF423	23090	genome.wustl.edu	37	16	49670876	49670876	+	Silent	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015069.2	-1	reviewed	p.F729	1.000	49	0%	59	16.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
KCTD19	146212	genome.wustl.edu	37	16	67335725	67335725	+	Silent	SNP	A	A	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100915.1	-1	provisional	p.T248	0.058	60	0%	53	15.1%	-	-	-	-	-	superfamily_BTB/POZ_fold
PKD1L3	342372	genome.wustl.edu	37	16	72015959	72015959	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335106	-1	known	p.P381R	0.746	69	0%	45	15.6%	-	-	-	-	-	NULL
ZCCHC14	23174	genome.wustl.edu	37	16	87446542	87446542	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015144.2	-1	validated	p.P458	0.266	31	0%	32	15.6%	-	-	-	-	-	NULL
USP6	9098	genome.wustl.edu	37	17	5050477	5050477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004505.2	+1	validated	p.P807A	1.000	126	0%	112	23.2%	-	-	probably_damaging(0.977)	tolerated(0.16)	deleterious(0.478)	HMMPfam_UCH,superfamily_Cysteine proteinases
TP53	7157	genome.wustl.edu	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R249S	0.977	43	0%	32	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
ATAD5	79915	genome.wustl.edu	37	17	29203442	29203442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.P1220A	1.000	58	0%	52	15.4%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000226049	0	genome.wustl.edu	37	17	32365212	32365212	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430493	-1	known	p.E503*	1.000	88	0%	90	18.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KRT39	390792	genome.wustl.edu	37	17	39116675	39116675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213656.3	-1	reviewed	p.D359H	0.000	48	0%	55	12.7%	-	-	benign(0.009)	tolerated(0.21)	neutral(0.044)	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39118419	39118419	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213656.3	-1	reviewed	p.R331*	1.000	96	0%	84	13.1%	-	-	-	-	-	HMMPfam_Filament
KPNB1	3837	genome.wustl.edu	37	17	45727622	45727623	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	p.T5fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
ABCC3	8714	genome.wustl.edu	37	17	48745191	48745192	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144070.1	+1	reviewed	p.P572fs	0.002:0.001	-	-	-	-	-	-	-	-	-	NULL
ZACN	353174	genome.wustl.edu	37	17	74076480	74076480	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_180990.3	+1	validated	p.L173	0.650	32	0%	43	18.6%	-	-	-	-	-	superfamily_Nicotinic receptor ligand binding domain-like
JMJD6	23210	genome.wustl.edu	37	17	74720111	74720111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081461.1	-1	reviewed	p.G183E	1.000	64	0%	62	14.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
PGS1	9489	genome.wustl.edu	37	17	76410964	76410964	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024419.3	+1	provisional	p.L469	1.000	40	0%	42	11.9%	-	-	-	-	-	HMMPfam_PLDc
PPP1R27	116729	genome.wustl.edu	37	17	79792663	79792663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007533.3	-1	validated	p.S56F	0.359	31	0%	52	19.2%	-	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	superfamily_ANK
EMILIN2	84034	genome.wustl.edu	37	18	2891297	2891297	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.S391*	0.006	33	0%	51	15.7%	-	-	-	-	-	NULL
DCC	1630	genome.wustl.edu	37	18	50589734	50589734	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.E349Q	1.000	117	0%	105	17.1%	-	-	probably_damaging(0.968)	tolerated(0.06)	deleterious(0.732)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
COL5A3	50509	genome.wustl.edu	37	19	10087235	10087235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015719.3	-1	reviewed	p.P1114L	0.955	22	0%	12	58.3%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_Collagen
AP1M2	10053	genome.wustl.edu	37	19	10694609	10694609	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005498.4	-1	reviewed	p.I60M	1.000	47	0%	35	22.9%	-	-	possibly_damaging(0.44)	tolerated(0.16)	neutral(0.203)	superfamily_SNARE-like
C19orf43	79002	genome.wustl.edu	37	19	12841801	12841801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024038.2	-1	predicted	p.D169N	1.000	73	0%	93	17.2%	-	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	NULL
LIPE	3991	genome.wustl.edu	37	19	42930599	42930599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.E235Q	0.025	82	0%	84	11.9%	-	-	benign(0.076)	deleterious(0)	neutral(0.450)	NULL
PSG2	5670	genome.wustl.edu	37	19	43570726	43570726	+	Missense_Mutation	SNP	G	G	C	rs1058470	byCluster	TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031246.2	-1	validated	p.L331V	0.000	130	0%	150	12%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
ZNF234	10780	genome.wustl.edu	37	19	44661232	44661232	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144824.1	+1	validated	p.Q355*	0.000	68	0%	89	18%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PNMAL2	57469	genome.wustl.edu	37	19	46997286	46997286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020709.1	-1	validated	p.Y479*	0.000	25	0%	34	20.6%	-	-	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47422158	47422158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.W76R	1.000	55	0%	55	32.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF613	79898	genome.wustl.edu	37	19	52448643	52448643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031721.3	+1	validated	p.R503W	0.998	39	0%	48	14.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52505093	52505093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198480.2	-1	provisional	p.D71H	0.000	137	0%	155	12.3%	-	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
ZNF160	90338	genome.wustl.edu	37	19	53572019	53572019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102603.1	-1	reviewed	p.E590Q	1.000	31	0%	61	16.4%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57326167	57326167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.E1215Q	0.007	54	0%	66	21.2%	-	-	benign(0.048)	tolerated(0.55)	neutral(0.010)	NULL
ZNF264	9422	genome.wustl.edu	37	19	57724305	57724305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003417.4	+1	reviewed	p.D614N	0.138	25	0%	31	19.4%	-	-	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
TRIM28	10155	genome.wustl.edu	37	19	59061211	59061211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005762.2	+1	reviewed	p.S697*	0.993	56	0%	74	23%	-	-	-	-	-	HMMSmart_SM00297
ENTPD6	955	genome.wustl.edu	37	20	25205883	25205883	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001247.2	+1	reviewed	p.S429*	0.000	60	0%	55	14.5%	-	-	-	-	-	HMMPfam_GDA1_CD39
NCOA5	57727	genome.wustl.edu	37	20	44692112	44692112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020967.2	-1	reviewed	p.I346T	1.000	82	0%	78	16.7%	-	-	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	NULL
MORC3	23515	genome.wustl.edu	37	21	37747461	37747461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015358.2	+1	reviewed	p.R896P	0.993	76	0%	83	13.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TTC3	7267	genome.wustl.edu	37	21	38529195	38529195	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.F993L	1.000	64	0%	72	11.1%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	superfamily_Spectrin,superfamily_SSF48452
ADRBK2	157	genome.wustl.edu	37	22	26070482	26070482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005160.3	+1	reviewed	p.D212H	1.000	99	0%	104	15.4%	-	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
C22orf42	150297	genome.wustl.edu	37	22	32545576	32545576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010859.1	-1	provisional	p.R236Q	0.088	29	0%	33	18.2%	-	-	unknown(0)	-	-	NULL
C22orf23	84645	genome.wustl.edu	37	22	38349088	38349088	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032561.2	-1	predicted	p.I23M	0.004	45	0%	61	16.4%	-	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_UPF0193
PLA2G6	8398	genome.wustl.edu	37	22	38522395	38522395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003560.2	-1	reviewed	p.M470I	0.999	44	0%	48	22.9%	-	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
SAMM50	25813	genome.wustl.edu	37	22	44372665	44372665	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015380.4	+1	validated	p.I271M	0.461	99	0%	86	18.6%	-	-	possibly_damaging(0.935)	deleterious(0.03)	deleterious(0.745)	HMMPfam_Bac_surface_Ag
MID1	4281	genome.wustl.edu	37	X	10535109	10535109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000381.2	-1	reviewed	p.R160P	1.000	60	0%	55	27.3%	-	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMSmart_SM00336
PDK3	5165	genome.wustl.edu	37	X	24521541	24521541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142386.2	+1	reviewed	p.D140H	1.000	88	0%	65	16.9%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_BCDHK_Adom3,superfamily_SSF69012
MAGEB6	158809	genome.wustl.edu	37	X	26212150	26212150	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173523.2	+1	reviewed	p.E63*	0.004	57	0%	89	18%	-	-	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32486647	32486647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.E1044Q	1.000	68	0%	71	16.9%	-	-	benign(0.324)	tolerated(0.41)	neutral(0.117)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYTL5	94122	genome.wustl.edu	37	X	37913533	37913533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138780.2	+1	reviewed	p.V63I	1.000	67	0%	95	11.6%	-	-	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF
SYP	6855	genome.wustl.edu	37	X	49049855	49049855	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000472598	-1	known	p.G53D	0.918	57	0%	49	14.3%	-	-	-	-	-	HMMPfam_MARVEL
CACNA1F	778	genome.wustl.edu	37	X	49075397	49075397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.L904V	1.000	24	0%	32	28.1%	-	-	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49076224	49076225	+	In_Frame_Ins	INS	-	-	TCC	rs112450928		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.819in_frame_insE	0.885:0.912	-	-	-	-	-	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54950196	54950196	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.R411*	0.998	34	0%	29	31%	-	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54955610	54955610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039705.1	+1	reviewed	p.C818F	0.000	33	0%	54	14.8%	-	-	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64708988	64708988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.D92H	0.157	38	0%	40	15%	-	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
RAB41	347517	genome.wustl.edu	37	X	69504463	69504463	+	Silent	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032726.2	+1	reviewed	p.F213	0.000	57	0%	56	12.5%	-	-	-	-	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
HDX	139324	genome.wustl.edu	37	X	83599446	83599446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144657.4	-1	validated	p.R491K	1.000	33	0%	67	17.9%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
POF1B	79983	genome.wustl.edu	37	X	84622743	84622743	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	p.S104C	1.000	132	0%	123	15.4%	-	-	possibly_damaging(0.858)	deleterious(0.04)	deleterious(0.680)	NULL
GLRA4	441509	genome.wustl.edu	37	X	102977164	102977164	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024452.2	-1	validated	p.Q212*	1.000	71	0%	57	19.3%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
COL4A6	1288	genome.wustl.edu	37	X	107420129	107420129	+	Silent	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	p.L877	0.000	80	0%	76	10.5%	-	-	-	-	-	HMMPfam_Collagen
STAG2	10735	genome.wustl.edu	37	X	123171402	123171402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.S105L	1.000	109	0%	165	13.9%	-	-	benign(0.008)	tolerated(0.15)	neutral(0.241)	NULL
SMARCA1	6594	genome.wustl.edu	37	X	128602763	128602763	+	Silent	SNP	G	G	T	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.V895	1.000	84	0%	91	11%	-	-	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR112	139378	genome.wustl.edu	37	X	135430053	135430053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.M1396I	0.005	67	0%	97	13.4%	-	-	benign(0.386)	tolerated(0.31)	neutral(0.150)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144905359	144905359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-E6-A1LZ-01A-11D-A142-09	TCGA-E6-A1LZ-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.N472K	1.000	56	0%	70	14.3%	-	-	possibly_damaging(0.854)	tolerated(0.31)	neutral(0.356)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
