Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LOC441666	441666	broad.mit.edu	37	10	42832122	42832122	+	RNA	SNP	C	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr10:42832122C>T	uc010qey.1	-	3		c.1853G>A				NR_024380				Homo sapiens noncoding mRNA sequence.												0						CAGTAAAAGGCTTTGCCACAT	0.348000													3	12	---	---	---	---	0	0	0.000248	0	0
VCL	7414	broad.mit.edu	37	10	75868775	75868775	+	Missense_Mutation	SNP	A	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr10:75868775A>G	uc001jwd.2	+	18	2700	c.2606A>G	c.(2605-2607)GAG>GGG	p.E869G	VCL_uc009xrr.2_Missense_Mutation_p.E618G|VCL_uc010qky.1_Missense_Mutation_p.E776G|VCL_uc001jwe.2_Missense_Mutation_p.E869G|VCL_uc010qkz.1_Splice_Site_p.V131_splice	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	869	Linker (Pro-rich).|Pro-rich.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					CCTGAAGGTGAGGTCCCTCCA	0.512000													3	94	---	---	---	---	0	0	0.000248	0	0
DLG5	9231	broad.mit.edu	37	10	79580906	79580906	+	Silent	SNP	C	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr10:79580906C>T	uc001jzk.2	-	15	3406	c.3336G>A	c.(3334-3336)CGG>CGA	p.R1112R	DLG5_uc001jzi.2_5'Flank|DLG5_uc001jzj.2_Intron|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.R716R	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1112					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CAGATTTTGGCCGGCGACGCT	0.602000													4	64	---	---	---	---	0	0	0.000248	0	0
TAF6L	10629	broad.mit.edu	37	11	62546414	62546414	+	Silent	SNP	G	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr11:62546414G>C	uc001nvc.2	+	6	611	c.510G>C	c.(508-510)GGG>GGC	p.G170G	TAF6L_uc009yof.2_Silent_p.G170G	NM_006473	NP_006464	Q9Y6J9	TAF6L_HUMAN	TAF6-like RNA polymerase II	170					chromatin remodeling|histone H3 acetylation|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	histone deacetylase complex|STAGA complex	DNA binding|protein binding|transcription coactivator activity			ovary(3)	3						CTGTGCTAGGGGATGATCCGC	0.468000													3	124	---	---	---	---	0	0	0.004672	0	0
KBTBD3	143879	broad.mit.edu	37	11	105924439	105924439	+	Missense_Mutation	SNP	T	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr11:105924439T>C	uc001pja.2	-	4	1617	c.977A>G	c.(976-978)CAA>CGA	p.Q326R	KBTBD3_uc001pjb.2_Missense_Mutation_p.Q326R|KBTBD3_uc009yxm.2_Missense_Mutation_p.Q247R	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	322	Kelch 1.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		CAGGTGTGATTGCGGCAGTAT	0.363000													14	79	---	---	---	---	0	0	0.004990	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130286920	130286920	+	Silent	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr11:130286920G>A	uc001qgg.3	-	3	1369	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	337	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		AAATGGTCCCGATGTCTGCCA	0.597000													4	120	---	---	---	---	0	0	0.000248	0	0
OVCH1	341350	broad.mit.edu	37	12	29607866	29607866	+	Missense_Mutation	SNP	C	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr12:29607866C>A	uc001rix.1	-	21	2438	c.2438G>T	c.(2437-2439)GGT>GTT	p.G813V		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	813					proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TGAAGCAGGACCTGTATTTGG	0.378000													3	24	---	---	---	---	0.004672	0.00566767	0.004672	1	0
PRDM4	11108	broad.mit.edu	37	12	108134795	108134795	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr12:108134795G>A	uc001tmp.2	-	10	2289	c.1852C>T	c.(1852-1854)CAC>TAC	p.H618Y	PRDM4_uc010sww.1_Missense_Mutation_p.H25Y|PRDM4_uc001tmq.2_RNA	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	618	C2H2-type 2.				cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TCACACTTGTGGGGCTTCATA	0.473000													4	167	---	---	---	---	0	0	0.000248	0	0
NALCN	259232	broad.mit.edu	37	13	101795522	101795522	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr13:101795522C>G	uc001vox.1	-	17	2216	c.2027G>C	c.(2026-2028)TGC>TCC	p.C676S	NALCN_uc001voy.2_Missense_Mutation_p.C391S	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	676	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCTCAGGAGGCAACATGTGTC	0.468000													8	96	---	---	---	---	0	0	0.003080	0	0
HEATR5A	25938	broad.mit.edu	37	14	31765218	31765218	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr14:31765218G>A	uc001wrf.3	-	28	4714	c.4637C>T	c.(4636-4638)ACA>ATA	p.T1546I	HEATR5A_uc010ami.2_Missense_Mutation_p.T1369I	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1833							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		AATAAACACTGTGATAGCAGT	0.348000													16	88	---	---	---	---	0	0	0.004990	0	0
ADAM6	8755	broad.mit.edu	37	14	106622271	106622271	+	Splice_Site	SNP	C	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr14:106622271C>G	uc010tyt.1	-	1111		c.25424_splice	c.e1111-1							Parts of antibodies, mostly variable regions.												0						TGTCCACTCACTCAATATCCT	0.453000													6	128	---	---	---	---	0	0	0.001168	0	0
RAB40C	57799	broad.mit.edu	37	16	676071	676071	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr16:676071G>A	uc002chr.2	+	5	631	c.515G>A	c.(514-516)CGC>CAC	p.R172H	RAB40C_uc002chq.2_Missense_Mutation_p.R153H	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	172					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				GAGCTATCCCGCATCGTGCTC	0.647000													4	106	---	---	---	---	0	0	0.000602	0	0
DNAH9	1770	broad.mit.edu	37	17	11726231	11726231	+	Missense_Mutation	SNP	G	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr17:11726231G>T	uc002gne.2	+	48	9194	c.9126G>T	c.(9124-9126)AAG>AAT	p.K3042N	DNAH9_uc010coo.2_Missense_Mutation_p.K2336N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3042					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAACTCCCAAGTCCTTTCTGG	0.478000													5	91	---	---	---	---	3.59834e-05	4.93105e-05	0.001168	1	0
DDX5	1655	broad.mit.edu	37	17	62496218	62496218	+	Silent	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr17:62496218G>A	uc002jek.2	-	13	1915	c.1668C>T	c.(1666-1668)ACC>ACT	p.T556T	DDX5_uc010deh.2_Silent_p.T556T|DDX5_uc002jej.2_Silent_p.T451T|DDX5_uc010wqa.1_Silent_p.T477T	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	556					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TCCTAAAACTGGTCTGTATAC	0.403000			T	ETV4	prostate								4	94	---	---	---	---	0	0	0.000248	0	0
ALPK2	115701	broad.mit.edu	37	18	56149135	56149135	+	Missense_Mutation	SNP	T	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr18:56149135T>C	uc002lhj.3	-	13	6647	c.6433A>G	c.(6433-6435)ATT>GTT	p.I2145V		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	2145							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CTTTTCCCAATGCTCGGCTGC	0.433000													5	95	---	---	---	---	0	0	0.000602	0	0
EPS15L1	58513	broad.mit.edu	37	19	16496012	16496012	+	Silent	SNP	T	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr19:16496012T>A	uc002ndz.1	-	21	2181	c.2175A>T	c.(2173-2175)GGA>GGT	p.G725G	EPS15L1_uc002ndx.2_Silent_p.G725G|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Silent_p.G615G|EPS15L1_uc010xpf.1_Silent_p.G628G|EPS15L1_uc002nea.1_Silent_p.G725G|EPS15L1_uc010eah.1_Silent_p.G727G	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	725	15 X 3 AA repeats of D-P-F.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						GATCTAAGGTTCCAAAGGGAT	0.542000													5	129	---	---	---	---	0	0	0.000602	0	0
ZNF234	10780	broad.mit.edu	37	19	44662001	44662001	+	Missense_Mutation	SNP	T	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr19:44662001T>C	uc002oym.2	+	6	2139	c.1832T>C	c.(1831-1833)CTC>CCC	p.L611P	ZNF234_uc002oyl.3_Missense_Mutation_p.L611P	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	611	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				GCCTCAAGTCTCCAACTTCAT	0.463000													3	124	---	---	---	---	0	0	0.004672	0	0
HTRA2	27429	broad.mit.edu	37	2	74757160	74757160	+	Silent	SNP	T	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr2:74757160T>G	uc002smi.1	+	1	629	c.27T>G	c.(25-27)GGT>GGG	p.G9G	AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_5'Flank|AUP1_uc002smg.2_5'Flank|AUP1_uc002smh.2_5'Flank|AUP1_uc010yrx.1_5'Flank|AUP1_uc010yry.1_5'Flank|HTRA2_uc002smj.1_Silent_p.G9G|HTRA2_uc002smk.1_Silent_p.G9G|HTRA2_uc002sml.1_Silent_p.G9G|HTRA2_uc002smm.1_Intron|HTRA2_uc002smn.1_Intron|HTRA2_uc010ffl.2_5'Flank	NM_013247	NP_037379	O43464	HTRA2_HUMAN	HtrA serine peptidase 2 isoform 1 preproprotein	9					apoptosis|proteolysis|response to stress	CD40 receptor complex|endoplasmic reticulum membrane|internal side of plasma membrane|mitochondrial intermembrane space|mitochondrial membrane|nucleus	serine-type endopeptidase activity|unfolded protein binding			ovary(1)	1						CGGGGCGGGGTGCAGGCTGGA	0.716000													5	36	---	---	---	---	0	0	0.000978	0	0
DOK1	1796	broad.mit.edu	37	2	74784179	74784179	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr2:74784179G>A	uc002sms.2	+	5	1406	c.1384G>A	c.(1384-1386)GAC>AAC	p.D462N	DOK1_uc002smr.2_Missense_Mutation_p.D323N|DOK1_uc010ffo.2_Missense_Mutation_p.D323N|DOK1_uc002smt.2_Missense_Mutation_p.D248N|DOK1_uc002smu.2_Missense_Mutation_p.D248N|DOK1_uc010yrz.1_Missense_Mutation_p.D451N|DOK1_uc002smv.2_Missense_Mutation_p.D323N|DOK1_uc002smw.1_Missense_Mutation_p.D248N	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	462					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						AGGGAGCTGGGACTGTGGGCT	0.592000													6	64	---	---	---	---	0	0	0.001984	0	0
KDM3A	55818	broad.mit.edu	37	2	86705781	86705781	+	Missense_Mutation	SNP	A	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr2:86705781A>G	uc002sri.3	+	15	2566	c.2239A>G	c.(2239-2241)ATA>GTA	p.I747V	KDM3A_uc010ytj.1_Missense_Mutation_p.I747V|KDM3A_uc010ytk.1_Missense_Mutation_p.I695V	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	747					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						GAAATGGGGAATAAAGGCAAA	0.388000													11	80	---	---	---	---	0	0	0.008291	0	0
GPR45	11250	broad.mit.edu	37	2	105859029	105859029	+	Silent	SNP	G	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr2:105859029G>C	uc002tco.1	+	1	830	c.714G>C	c.(712-714)CTG>CTC	p.L238L		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	238	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GCCTGGACCTGCGGCAGCTCA	0.647000													3	80	---	---	---	---	0	0	0.004672	0	0
SP140L	93349	broad.mit.edu	37	2	231264857	231264857	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr2:231264857G>A	uc010fxm.1	+	15	1304	c.1213G>A	c.(1213-1215)GAG>AAG	p.E405K	SP140L_uc010fxo.1_Missense_Mutation_p.E177K	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	405	PHD-type; degenerate.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						AAACTTGGATGAGTGTGAGGT	0.512000													21	80	---	---	---	---	0	0	0.002780	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353000													3	115	---	---	---	---	0	0	0.001168	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353000													3	115	---	---	---	---	0	0	0.001168	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378000													6	73	---	---	---	---	0	0	0.001368	0	0
KIAA0406	9675	broad.mit.edu	37	20	36625191	36625191	+	Silent	SNP	G	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr20:36625191G>C	uc002xhl.2	-	7	3167	c.2958C>G	c.(2956-2958)GTC>GTG	p.V986V	KIAA0406_uc002xhm.2_Silent_p.V986V	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	986							binding				0		Myeloproliferative disorder(115;0.00874)				GGCCCTGTAAGACAGCCAGCT	0.602000													38	131	---	---	---	---	0	0	0.006230	0	0
ELFN2	114794	broad.mit.edu	37	22	37771067	37771067	+	Missense_Mutation	SNP	T	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr22:37771067T>G	uc003asq.3	-	3	1294	c.508A>C	c.(508-510)ACC>CCC	p.T170P		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	170	LRR 5.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CTGGCAAAGGTGGCACCGTCC	0.647000													8	63	---	---	---	---	0	0	0.006122	0	0
ST13	6767	broad.mit.edu	37	22	41231667	41231667	+	Missense_Mutation	SNP	C	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr22:41231667C>T	uc003aze.2	-	7	618	c.475G>A	c.(475-477)GTC>ATC	p.V159I	ST13_uc011aow.1_Missense_Mutation_p.V149I	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	159	TPR 2.						protein binding, bridging				0						TGTAATTTGACGAAGACACTG	0.383000													4	181	---	---	---	---	0	0	0.000248	0	0
RGS12	6002	broad.mit.edu	37	4	3430427	3430427	+	Missense_Mutation	SNP	A	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr4:3430427A>T	uc003ggw.2	+	16	4458	c.3554A>T	c.(3553-3555)GAC>GTC	p.D1185V	RGS12_uc003ggv.2_Missense_Mutation_p.D1185V|RGS12_uc003ggy.1_Intron|RGS12_uc003ggz.2_Missense_Mutation_p.D537V|RGS12_uc011bvs.1_Intron|RGS12_uc003gha.2_Missense_Mutation_p.D527V|RGS12_uc010icv.2_Missense_Mutation_p.D384V	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1185						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ATTAATTTGGACGAAGCAGAG	0.358000													3	65	---	---	---	---	0	0	0.000248	0	0
C4orf40	401137	broad.mit.edu	37	4	71024450	71024450	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr4:71024450G>A	uc003hfa.3	+	4	554	c.481G>A	c.(481-483)GAG>AAG	p.E161K	C4orf40_uc003hfb.3_Missense_Mutation_p.E161K	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	161	Ala-rich.					extracellular region					0						GCCTGCTGCAGAGGCACCTGT	0.622000													5	66	---	---	---	---	0	0	0.000602	0	0
C6orf142	90523	broad.mit.edu	37	6	53989598	53989598	+	Missense_Mutation	SNP	G	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr6:53989598G>T	uc003pcg.3	+	3	660	c.547G>T	c.(547-549)GAT>TAT	p.D183Y	C6orf142_uc003pcf.2_Missense_Mutation_p.D183Y|C6orf142_uc003pch.3_Missense_Mutation_p.D121Y|C6orf142_uc011dwz.1_Missense_Mutation_p.D142Y|C6orf142_uc011dxa.1_Missense_Mutation_p.D194Y	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	183						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					ACAGGGGACTGATCTCAAGAC	0.542000													5	66	---	---	---	---	0.000602214	0.000781822	0.000602	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	55	---	---	---	---	0	0	0.003330	0	0
ENPP2	5168	broad.mit.edu	37	8	120575112	120575112	+	Missense_Mutation	SNP	G	T	T	rs61740048	byFrequency	TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr8:120575112G>T	uc003yot.1	-	24	2492	c.2406C>A	c.(2404-2406)AAC>AAA	p.N802K	ENPP2_uc011lic.1_Missense_Mutation_p.N340K|ENPP2_uc003yor.1_Missense_Mutation_p.N437K|ENPP2_uc003yos.1_Missense_Mutation_p.N854K|ENPP2_uc010mdd.1_Missense_Mutation_p.N827K	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	802					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding	p.N854N(1)		ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AGCTCTCCTCGTTGTCAGGCC	0.478000													8	74	---	---	---	---	0.00448238	0.00552827	0.004482	1	0
SPANXN5	494197	broad.mit.edu	37	X	52825587	52825587	+	Silent	SNP	A	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chrX:52825587A>G	uc004drc.1	-	2	160	c.160T>C	c.(160-162)TTG>CTG	p.L54L		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	54											0	Ovarian(276;0.236)					CTGTAGCACAACACTAATACT	0.418000													4	150	---	---	---	---	0	0	0.000248	0	0
HMGB3	3149	broad.mit.edu	37	X	150155679	150155679	+	Silent	SNP	G	C	C			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chrX:150155679G>C	uc004fep.2	+	4	461	c.369G>C	c.(367-369)GTG>GTC	p.V123V	HMGB3_uc004feq.2_3'UTR|HMGB3_uc004fer.2_Silent_p.V123V	NM_005342	NP_005333	O15347	HMGB3_HUMAN	high-mobility group box 3	123	HMG box 2.				DNA recombination|multicellular organismal development	chromosome|nucleus	DNA bending activity|double-stranded DNA binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					TTGGAGACGTGGCAAAAAAGC	0.428000													4	54	---	---	---	---	0	0	0.000248	0	0
Unknown	0	broad.mit.edu	37	1	208870616	208870616	+	IGR	DEL	T	-	-			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr1:208870616delT								PLXNA2 (452951 upstream) : LOC642587 (731552 downstream)																							gaaccacctcttTTTTTTTTT	0.174													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	112332121	112332121	+	IGR	DEL	T	-	-			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr11:112332121delT								PTS (191444 upstream) : NCAM1 (499874 downstream)																							TGATTTTATGTTTTTTTTTTT	0.378													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	25988693	25988702	+	IGR	DEL	CACAGGTGGC	-	-	rs3217511		TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr17:25988693_25988702delCACAGGTGGC								LGALS9 (12108 upstream) : NOS2 (95091 downstream)																							GATGTAAAAGCACAGGTGGCCACAGGTTAC	0.500													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16915279	16915280	+	IGR	INS	-	TT	TT	rs5746975		TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr22:16915279_16915280insTT								OR11H1 (465475 upstream) : CCT8L2 (156368 downstream)																							TCTCCCTCACCAtttttttttt	0.129													3	4	---	---	---	---					
KAT2B	8850	broad.mit.edu	37	3	20113852	20113853	+	Frame_Shift_Ins	INS	-	G	G			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr3:20113852_20113853insG	uc003cbq.2	+	2	777_778	c.331_332insG	c.(331-333)TGGfs	p.W111fs		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	111					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATGTAATGGCTGGAAAAACCCT	0.455													10	165	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	22813177	22813178	+	IGR	INS	-	C	C	rs145036723	by1000genomes	TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr7:22813177_22813178insC								IL6 (41558 upstream) : TOMM7 (39076 downstream)																							TCCTAGATAAGCCCCTACACTC	0.337													4	7	---	---	---	---					
XKR6	286046	broad.mit.edu	37	8	11058892	11058892	+	5'Flank	DEL	C	-	-			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr8:11058892delC	uc003wtk.1	-							NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related							integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		ggagggacggcgggggggggg	0.249													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69787982	69787985	+	IGR	DEL	AACA	-	-	rs59524350		TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr9:69787982_69787985delAACA								LOC100133920 (123033 upstream) : FOXD4L5 (387724 downstream)																							AGATAGAGGTAACAAACTTAAATA	0.368													3	3	---	---	---	---					
FLJ43950	347127	broad.mit.edu	37	9	84528568	84528568	+	Frame_Shift_Del	DEL	A	-	-			TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chr9:84528568delA	uc011lst.1	+	1	217	c.116delA	c.(115-117)CAAfs	p.Q39fs		NR_026851				SubName: Full=cDNA FLJ43950 fis, clone TESTI4015293, moderately similar to FAM75-like protein;												0						AATGATATCCAAAAGGTAAGG	0.398													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	152871884	152871904	+	IGR	DEL	GTAAAGGGATTTTGTTCACCA	-	-	rs139494223		TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chrX:152871884_152871904delGTAAAGGGATTTTGTTCACCA								FAM58A (7252 upstream) : DUSP9 (35993 downstream)																							ttaaaattaggtaaagggatttTGTTCACCAGTAAAGGGAT	0.271													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13500860	13500860	+	IGR	DEL	G	-	-	rs76607402		TCGA-E8-A242-01A-21D-A16O-08	TCGA-E8-A242-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	c79767c4-0323-44fd-bcf1-0b7619f11f36	cfdba246-27f6-41c1-8899-0db2dae128a2	g.chrY:13500860delG								None (None upstream) : None (None downstream)																							TGATTTCTAAGACTTTTGAAA	0.274													2	4	---	---	---	---					
