Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	14976	14976	+	RNA	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:14976G>A	uc009vis.2	-	3		c.369C>T			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_Intron|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						CTACCCTTGCGCCTCATGACC	0.582													3	3					0	0	0.004672	0	0
DVL1	1855	broad.mit.edu	37	1	1271760	1271760	+	Missense_Mutation	SNP	C	T	T	rs140108185		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:1271760C>T	uc001aer.3	-	15	1822	c.1775G>A	c.(1774-1776)CGA>CAA	p.R592Q	DVL1_uc002quu.2_Missense_Mutation_p.R334Q|DVL1_uc009vka.2_Missense_Mutation_p.R275Q|DVL1_uc001aeu.1_3'UTR	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	617					canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CGGACGCTCTCGCCAGCTGCT	0.761													5	34					0	0	0.001168	0	0
PRDM16	63976	broad.mit.edu	37	1	3331184	3331184	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:3331184G>A	uc001akf.2	+	10	2744	c.2664G>A	c.(2662-2664)CGG>CGA	p.R888R	PRDM16_uc001akc.2_Silent_p.R887R|PRDM16_uc001akd.2_Silent_p.R887R|PRDM16_uc001ake.2_Silent_p.R888R|PRDM16_uc009vlh.2_Silent_p.R588R	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	888	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		AGTACCTGCGGCCGTCCCCGC	0.652			T	EVI1	MDS|AML								11	33					0	0	0.020292	0	0
LRRC47	57470	broad.mit.edu	37	1	3703794	3703794	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:3703794G>A	uc001akx.1	-	2	724	c.696C>T	c.(694-696)TTC>TTT	p.F232F		NM_020710	NP_065761	Q8N1G4	LRC47_HUMAN	leucine rich repeat containing 47	232	LRR 7.				translation		phenylalanine-tRNA ligase activity|RNA binding			large_intestine(1)|ovary(1)	2	all_cancers(77;0.0375)|Ovarian(185;0.0634)|all_lung(157;0.208)|Lung NSC(156;0.21)	all_epithelial(116;1.34e-16)|all_lung(118;2.53e-06)|Lung NSC(185;0.00028)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.0743)|Ovarian(437;0.127)		Epithelial(90;5.49e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.43e-22)|GBM - Glioblastoma multiforme(42;3.69e-16)|Colorectal(212;1.21e-05)|COAD - Colon adenocarcinoma(227;5.87e-05)|Kidney(185;0.000367)|BRCA - Breast invasive adenocarcinoma(365;0.000704)|KIRC - Kidney renal clear cell carcinoma(229;0.00567)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		TGTTCCCACGGAAATTGATCT	0.592													20	46					0	0	0.008871	0	0
TNFRSF8	943	broad.mit.edu	37	1	12183367	12183367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:12183367G>A	uc001atq.2	+	9	1195	c.973G>A	c.(973-975)GAG>AAG	p.E325K	TNFRSF8_uc010obc.1_Missense_Mutation_p.E214K|TNFRSF8_uc001atr.2_5'Flank|TNFRSF8_uc001ats.2_5'Flank	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	325	Extracellular (Potential).|TNFR-Cys 6.				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CACCACCTTTGAGGCGCCACC	0.617													6	22					0	0	0.001984	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809378	18809378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:18809378G>A	uc001bax.2	+	1	1955	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E417K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	635	Kelch 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCGTGCCAAGGAAATCTTCGT	0.711													11	15					0	0	0.010729	0	0
AIM1L	55057	broad.mit.edu	37	1	26664149	26664149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:26664149G>A	uc001bmd.3	-	8	819	c.389C>T	c.(388-390)GCC>GTC	p.A130V	AIM1L_uc001bmf.3_Missense_Mutation_p.A21V	NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	130	Beta/gamma crystallin 'Greek key' 3.						sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		AAAGCCTGGGGCCTCATACAC	0.627													8	22					0	0	0.003080	0	0
SLC9A1	6548	broad.mit.edu	37	1	27434320	27434320	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:27434320C>T	uc001bnm.2	-	4	1727	c.1101G>A	c.(1099-1101)GTG>GTA	p.V367V	SLC9A1_uc010ofk.1_Silent_p.V28V|SLC9A1_uc001bnn.2_Silent_p.V367V	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	367	Extracellular (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	TGTTGGCCTCCACATAGGGGC	0.592													4	16					0	0	0.001168	0	0
ZMYM4	9202	broad.mit.edu	37	1	35852766	35852766	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:35852766C>T	uc001byt.2	+	12	2079	c.1999C>T	c.(1999-2001)CAG>TAG	p.Q667*	ZMYM4_uc009vuu.2_Nonsense_Mutation_p.Q635*|ZMYM4_uc001byu.2_Nonsense_Mutation_p.Q343*|ZMYM4_uc009vuv.2_Nonsense_Mutation_p.Q406*	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	667					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGCTGGTCTCCAGCGTCTCGC	0.517													6	46					0	0	0.001168	0	0
NCDN	23154	broad.mit.edu	37	1	36030874	36030874	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:36030874C>T	uc001bza.2	+	8	1927	c.1800C>T	c.(1798-1800)ATC>ATT	p.I600I	NCDN_uc001bzb.2_Silent_p.I600I|NCDN_uc001bzc.2_Silent_p.I583I	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	600					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CAGCTGCCATCCTCTTCCTAT	0.632											OREG0013355	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	113					0	0	0.012213	0	0
HPCAL4	51440	broad.mit.edu	37	1	40149795	40149795	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:40149795G>A	uc001cdr.2	-	3	312	c.192C>T	c.(190-192)TTC>TTT	p.F64F	HPCAL4_uc010oix.1_Intron	NM_016257	NP_057341	Q9UM19	HPCL4_HUMAN	hippocalcin-like protein 4	64	EF-hand 2.				central nervous system development	intracellular	calcium ion binding			central_nervous_system(1)	1	all_cancers(7;4.65e-13)|Lung NSC(20;2.88e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CGTGCTGCGCGAACTTGGAGG	0.687													6	20					0	0	0.001984	0	0
SLC5A9	200010	broad.mit.edu	37	1	48697782	48697782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:48697782G>A	uc001cro.2	+	7	908	c.856G>A	c.(856-858)GGG>AGG	p.G286R	SLC5A9_uc010oms.1_Intron|SLC5A9_uc001crn.2_Missense_Mutation_p.G311R|SLC5A9_uc010omt.1_Missense_Mutation_p.G300R|SLC5A9_uc001crp.2_5'UTR|SLC5A9_uc010omu.1_Intron	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	286	Helical; (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						TCTCATTTTCGGGCTCACAGT	0.617													6	43					0	0	0.003080	0	0
WDR78	79819	broad.mit.edu	37	1	67390462	67390462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:67390462G>A	uc001dcx.2	-	1	109	c.53C>T	c.(52-54)GCT>GTT	p.A18V	WDR78_uc001dcy.2_Missense_Mutation_p.A18V|WDR78_uc001dcz.2_Missense_Mutation_p.A18V|MIER1_uc001dda.3_5'Flank|MIER1_uc010opf.1_5'Flank|MIER1_uc009way.2_5'Flank|MIER1_uc001ddc.2_5'Flank|MIER1_uc001ddh.2_5'Flank|MIER1_uc001ddf.2_5'Flank|MIER1_uc001ddg.2_5'Flank|MIER1_uc010opg.1_5'Flank|MIER1_uc001dde.2_5'Flank	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	18										ovary(2)	2						GTACCCCCAAGCTCCTCCGTT	0.667													43	106					0	0	0.014410	0	0
DEPDC1	55635	broad.mit.edu	37	1	68947231	68947231	+	Silent	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:68947231A>T	uc001dem.3	-	9	1944	c.1827T>A	c.(1825-1827)CTT>CTA	p.L609L	DEPDC1_uc001dej.3_5'UTR|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Silent_p.L325L	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	609	Interaction with ZNF224.				intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		TTGGTGGGGGAAGTAACAAAC	0.403													4	23					0	0	0.001168	0	0
DPYD	1806	broad.mit.edu	37	1	97547907	97547907	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:97547907G>A	uc001drv.2	-	22	3023	c.2886C>T	c.(2884-2886)ACC>ACT	p.T962T		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	962	4Fe-4S ferredoxin-type 2.				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AATCATTACAGGTCATGTAGC	0.393													36	56					0	0	0.017118	0	0
BCL9	607	broad.mit.edu	37	1	147091185	147091185	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:147091185C>T	uc001epq.2	+	8	1964	c.1224C>T	c.(1222-1224)GCC>GCT	p.A408A	BCL9_uc010ozr.1_Silent_p.A334A	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	408	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CAATACAGGCCATGATGGCCC	0.537			T	IGH@|IGL@	B-ALL								41	48					0	0	0.006999	0	0
FCGR1C	100132417	broad.mit.edu	37	1	149378190	149378190	+	RNA	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:149378190C>T	uc010pbh.1	+	6		c.1231C>T				NR_027484				Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.												0						CACTTGCTCCCCGTGAGCACT	0.537													13	19					0	0	0.016723	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150525995	150525995	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:150525995G>A	uc001eux.2	+	6	764	c.528G>A	c.(526-528)CGG>CGA	p.R176R	ADAMTSL4_uc001euw.2_Silent_p.R176R|ADAMTSL4_uc009wlw.2_Silent_p.R176R|ADAMTSL4_uc010pcg.1_Silent_p.R176R	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	176					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GGCACCCTCGGAGCCCACCCA	0.592													29	27					0	0	0.007291	0	0
LCE1B	353132	broad.mit.edu	37	1	152784960	152784960	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:152784960C>A	uc001faq.2	+	1	514	c.38C>A	c.(37-39)CCT>CAT	p.P13H		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	13	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCCAGCCccctcccaagtgc	0.478													12	54					2.27111e-07	2.57267e-07	0.013537	1	0
IQGAP3	128239	broad.mit.edu	37	1	156518442	156518442	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:156518442C>G	uc001fpf.2	-	17	1999	c.1924G>C	c.(1924-1926)GTA>CTA	p.V642L		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	642					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCGGGAACTACCCCTCGAAGG	0.607													6	60					0	0	0.001168	0	0
FCRL1	115350	broad.mit.edu	37	1	157772444	157772444	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:157772444G>A	uc001frg.2	-	4	443	c.330C>T	c.(328-330)GTC>GTT	p.V110V	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Silent_p.V110V|FCRL1_uc001fri.2_Silent_p.V110V|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	110	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TCACATCAGCGACAGGGACCC	0.537													5	22					0	0	0.014758	0	0
OR10T2	128360	broad.mit.edu	37	1	158368834	158368834	+	Silent	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:158368834C>A	uc010pih.1	-	1	423	c.423G>T	c.(421-423)CTG>CTT	p.L141L		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					ACTCCAACCCCAGCCTTTTGT	0.478													11	65					0.000978159	0.0010746	0.010729	1	0
OR6N1	128372	broad.mit.edu	37	1	158735788	158735788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:158735788G>A	uc010piq.1	-	1	685	c.685C>T	c.(685-687)CCC>TCC	p.P229S		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCAGCTGAGGGAATTCTGAGC	0.498													57	82					0	0	0.014410	0	0
OR6N2	81442	broad.mit.edu	37	1	158746611	158746611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:158746611C>T	uc010pir.1	-	1	815	c.815G>A	c.(814-816)CGA>CAA	p.R272Q		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					AGCAAGTGTTCGGTCAAGGGT	0.433													22	46					0	0	0.014323	0	0
FCER1A	2205	broad.mit.edu	37	1	159273799	159273799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:159273799G>A	uc001ftq.2	+	4	257	c.158G>A	c.(157-159)GGG>GAG	p.G53E		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	53	Extracellular (Potential).|Ig-like 1.					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	ACATGTAATGGGAACAATTTC	0.363													18	32					0	0	0.006122	0	0
SLAMF6	114836	broad.mit.edu	37	1	160465995	160465995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:160465995G>A	uc001fwe.1	-	2	298	c.238C>T	c.(238-240)CCG>TCG	p.P80S	SLAMF6_uc001fwd.1_Missense_Mutation_p.P80S|SLAMF6_uc010pjh.1_Missense_Mutation_p.P31S|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Missense_Mutation_p.P31S	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	80	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			CCCTGTTTCGGATTAGTCACG	0.468													16	94					0	0	0.003163	0	0
MAEL	84944	broad.mit.edu	37	1	166987157	166987157	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:166987157G>A	uc001gdy.1	+	10	1073	c.1002G>A	c.(1000-1002)GTG>GTA	p.V334V	MAEL_uc001gdz.1_Silent_p.V303V|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	334					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GCAATAGTGTGACACCCAAAA	0.443													33	53					0	0	0.017118	0	0
ADCY10	55811	broad.mit.edu	37	1	167823666	167823666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:167823666C>T	uc001ger.2	-	18	2531	c.2233G>A	c.(2233-2235)GAA>AAA	p.E745K	ADCY10_uc009wvk.2_Missense_Mutation_p.E653K|ADCY10_uc010plj.1_Missense_Mutation_p.E592K|ADCY10_uc009wvl.2_Missense_Mutation_p.E744K	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	745					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TCATGATGTTCCAGGTTTTTA	0.423													29	42					0	0	0.005443	0	0
F5	2153	broad.mit.edu	37	1	169510960	169510960	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:169510960G>T	uc001ggg.1	-	13	3513	c.3368C>A	c.(3367-3369)CCA>CAA	p.P1123Q		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1123	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GTGTTCCTCTGGGGGCACTGT	0.478													16	112					1.3612e-06	1.53557e-06	0.003163	1	0
C1orf112	55732	broad.mit.edu	37	1	169801573	169801573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:169801573G>A	uc001ggp.2	+	17	1775	c.1465G>A	c.(1465-1467)GGA>AGA	p.G489R	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggq.2_Missense_Mutation_p.G489R|C1orf112_uc009wvt.2_Missense_Mutation_p.G166R|C1orf112_uc009wvu.1_Missense_Mutation_p.G365R|C1orf112_uc001ggr.2_Missense_Mutation_p.G354R|C1orf112_uc010plv.1_Missense_Mutation_p.G431R	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	489											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTCATGCCCTGGAGAATGTTA	0.378													28	50					0	0	0.008361	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526028	176526028	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:176526028G>T	uc001gkz.2	+	2	1734	c.570G>T	c.(568-570)AGG>AGT	p.R190S	PAPPA2_uc001gky.1_Missense_Mutation_p.R190S|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	190					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCAAAGGAGGGGCTGGGCCA	0.587													16	108					2.94398e-08	3.34878e-08	0.007413	1	0
RGL1	23179	broad.mit.edu	37	1	183711359	183711359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:183711359G>A	uc001gqm.2	+	2	528	c.67G>A	c.(67-69)GAA>AAA	p.E23K	RGL1_uc010pof.1_5'UTR|RGL1_uc010pog.1_Missense_Mutation_p.E23K|RGL1_uc010poh.1_Missense_Mutation_p.E23K	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	Error:Variant_position_missing_in_Q9NZL6_after_alignment					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CACCAAGGTAGAAAGCACGGG	0.453													7	50					0	0	0.001984	0	0
CDC73	79577	broad.mit.edu	37	1	193104526	193104526	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:193104526T>C	uc001gtb.2	+	4	556	c.313T>C	c.(313-315)TCG>CCG	p.S105P	MIR1278_hsa-mir-1278|MI0006425_5'Flank	NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	105					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						TTCAGCAACATCGGCAAGTAT	0.333									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				6	43					0	0	0.001984	0	0
F13B	2165	broad.mit.edu	37	1	197021897	197021897	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:197021897C>T	uc001gtt.1	-	9	1466	c.1422G>A	c.(1420-1422)GGG>GGA	p.G474G		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	474	Sushi 8.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTAAGACTTTCCCTTCATATT	0.323													18	41					0	0	0.007413	0	0
LHX9	56956	broad.mit.edu	37	1	197890485	197890485	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:197890485G>A	uc001guk.1	+	3	866	c.429G>A	c.(427-429)TCG>TCA	p.S143S	LHX9_uc001gui.1_Silent_p.S134S|LHX9_uc001guj.1_Silent_p.S149S	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	143	LIM zinc-binding 2.				motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						TTTCCGCCTCGGAGATGGTCA	0.577													25	37					0	0	0.006320	0	0
KIF21B	23046	broad.mit.edu	37	1	200971395	200971395	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:200971395C>T	uc001gvs.1	-	9	1613	c.1296G>A	c.(1294-1296)GGG>GGA	p.G432G	KIF21B_uc001gvr.1_Silent_p.G432G|KIF21B_uc009wzl.1_Silent_p.G432G|KIF21B_uc010ppn.1_Silent_p.G432G|KIF21B_uc001gvt.1_3'UTR	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	432	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCCGCAGGGCCCCATTCTCCT	0.597													38	50					0	0	0.021022	0	0
CACNA1S	779	broad.mit.edu	37	1	201061175	201061175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:201061175C>T	uc001gvv.2	-	4	693	c.466G>A	c.(466-468)GGA>AGA	p.G156R		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	156	Extracellular (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AAGCCGGCTCCTTTGCTGCTC	0.602													9	62					0	0	0.008291	0	0
PRSS38	339501	broad.mit.edu	37	1	228003849	228003849	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:228003849G>A	uc001hrh.2	+	2	207	c.207G>A	c.(205-207)AGG>AGA	p.R69R		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	69	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CGCCCGAGAGGAAGTGGCCGT	0.667													36	84					0	0	0.005524	0	0
C1orf69	200205	broad.mit.edu	37	1	228362564	228362564	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:228362564G>A	uc001hsl.3	+	2	602	c.513G>A	c.(511-513)GGG>GGA	p.G171G	C1orf69_uc010pvw.1_5'UTR	NM_001010867	NP_001010867	Q5T440	CAF17_HUMAN	hypothetical protein LOC200205 precursor	171					glycine catabolic process|heme biosynthetic process	mitochondrion	aminomethyltransferase activity				0		Prostate(94;0.0405)				AGGCCTGCGGGGCTGCATCGC	0.697													10	14					0	0	0.006214	0	0
OR2W5	441932	broad.mit.edu	37	1	247654771	247654771	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:247654771C>T	uc001icz.1	+	1	342	c.342C>T	c.(340-342)CTC>CTT	p.L114L		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGTGCGTCCTCCTGGTTGTCA	0.602													19	49					0	0	0.010504	0	0
OR2G2	81470	broad.mit.edu	37	1	247752288	247752288	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr1:247752288C>T	uc010pyy.1	+	1	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTATCCTTTTCCTTATAGTGC	0.498													31	52					0	0	0.008361	0	0
AKR1C2	1646	broad.mit.edu	37	10	5043747	5043747	+	Missense_Mutation	SNP	C	G	G	rs142672563	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:5043747C>G	uc010qan.1	-	2	390	c.211G>C	c.(211-213)GAT>CAT	p.D71H	AKR1E2_uc001ihl.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C2_uc009xhy.2_Missense_Mutation_p.D71H|AKR1C2_uc001ihs.2_Missense_Mutation_p.D71H|AKR1C2_uc001iht.2_Missense_Mutation_p.D71H|AKR1C2_uc010qao.1_Missense_Mutation_p.D71H	NM_205845	NP_995317	P52895	AK1C2_HUMAN	aldo-keto reductase family 1, member C2	71					digestion|prostaglandin metabolic process|steroid metabolic process	cytoplasm	androsterone dehydrogenase (A-specific) activity|bile acid binding|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0					NADH(DB00157)|Ursodeoxycholic acid(DB01586)	ACACTGCCATCTGCAATCTTG	0.443													5	69					0	0	0.001984	0	0
PRKCQ	5588	broad.mit.edu	37	10	6521089	6521089	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:6521089G>A	uc001ijj.1	-	12	1293	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	PRKCQ_uc009xim.1_Silent_p.F406F|PRKCQ_uc001iji.1_Silent_p.F439F|PRKCQ_uc009xin.1_Silent_p.F370F|PRKCQ_uc010qax.1_Silent_p.F281F	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	406	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity	p.F406F(1)		ovary(3)|lung(2)|large_intestine(1)	6						CCTTTATTGCGAAAAATTGAT	0.398													10	33					0	0	0.008291	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315708	30315708	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:30315708G>A	uc001iux.2	-	2	3428	c.3369C>T	c.(3367-3369)TCC>TCT	p.S1123S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.S985S|KIAA1462_uc009xle.1_Silent_p.S1123S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1123										ovary(4)	4						CTTCCTGGGGGGACTCTGGGG	0.642													18	33					0	0	0.006122	0	0
ANUBL1	93550	broad.mit.edu	37	10	46122251	46122251	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:46122251C>T	uc001jcp.3	-	7	1262	c.1020G>A	c.(1018-1020)CAG>CAA	p.Q340Q	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Silent_p.Q340Q|ANUBL1_uc009xmu.2_Silent_p.Q266Q|ANUBL1_uc001jcn.3_Silent_p.Q266Q|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	340							zinc ion binding				0						AATGGGGTATCTGAGGAGGTA	0.418													14	22					0	0	0.016723	0	0
PCDH15	65217	broad.mit.edu	37	10	55755516	55755516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:55755516C>T	uc001jju.1	-	21	3156	c.2761G>A	c.(2761-2763)GAT>AAT	p.D921N	PCDH15_uc010qhq.1_Missense_Mutation_p.D926N|PCDH15_uc010qhr.1_Missense_Mutation_p.D921N|PCDH15_uc010qhs.1_Missense_Mutation_p.D933N|PCDH15_uc010qht.1_Missense_Mutation_p.D928N|PCDH15_uc010qhu.1_Missense_Mutation_p.D921N|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.D921N|PCDH15_uc010qhw.1_Missense_Mutation_p.D884N|PCDH15_uc010qhx.1_Missense_Mutation_p.D850N|PCDH15_uc010qhy.1_Missense_Mutation_p.D926N|PCDH15_uc010qhz.1_Missense_Mutation_p.D921N|PCDH15_uc010qia.1_Missense_Mutation_p.D899N|PCDH15_uc010qib.1_Missense_Mutation_p.D899N|PCDH15_uc001jjw.2_Missense_Mutation_p.D921N	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	921	Extracellular (Potential).|Cadherin 8.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GGAGGATAATCATTCATATCC	0.398										HNSCC(58;0.16)			11	31					0	0	0.010729	0	0
ANXA7	310	broad.mit.edu	37	10	75135918	75135918	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:75135918T>A	uc001jtz.2	-	14	1475	c.1402A>T	c.(1402-1404)ACA>TCA	p.T468S	ANXA7_uc001jua.2_Missense_Mutation_p.T446S|ANXA7_uc001jub.2_Missense_Mutation_p.T406S|ANXA7_uc010qki.1_Missense_Mutation_p.T356S	NM_004034	NP_004025	P20073	ANXA7_HUMAN	annexin VII isoform 2	468	Annexin 4.						calcium ion binding|calcium-dependent phospholipid binding|calcium-dependent protein binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					GCAATCATTGTGCCCAGAGTC	0.363													3	16					0	0	0.004672	0	0
SLC16A12	387700	broad.mit.edu	37	10	91195972	91195972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:91195972G>A	uc001kgm.2	-	7	1434	c.1043C>T	c.(1042-1044)CCT>CTT	p.P348L	SLC16A12_uc001kgl.2_Missense_Mutation_p.P20L	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	348	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						ACAAGAGAAAGGCACGAGCAG	0.493													6	15					0	0	0.001168	0	0
CYP2C9	1559	broad.mit.edu	37	10	96701641	96701641	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:96701641C>T	uc001kka.3	+	2	220	c.195C>T	c.(193-195)TTC>TTT	p.F65F	CYP2C9_uc009xut.2_Silent_p.F65F|CYP2C9_uc001kjz.2_Silent_p.F65F	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	65					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GCCCTGTGTTCACTCTGTATT	0.438													56	115					0	0	0.014410	0	0
ADD3	120	broad.mit.edu	37	10	111886190	111886190	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr10:111886190C>T	uc001kyt.3	+	13	1851	c.1537C>T	c.(1537-1539)CGA>TGA	p.R513*	ADD3_uc001kys.3_Nonsense_Mutation_p.R513*|ADD3_uc001kyu.2_Nonsense_Mutation_p.R513*|ADD3_uc001kyv.2_Nonsense_Mutation_p.R513*|ADD3_uc001kyw.2_Nonsense_Mutation_p.R513*|ADD3_uc001kyx.2_Nonsense_Mutation_p.R86*	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	513						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		GGAACAAAATCGATATGACTT	0.353													8	13					0	0	0.008291	0	0
PDDC1	347862	broad.mit.edu	37	11	771391	771391	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:771391G>A	uc001lrc.2	-	6	511	c.486C>T	c.(484-486)TTC>TTT	p.F162F	PDDC1_uc010qwm.1_Silent_p.F112F|PDDC1_uc001lrd.2_Silent_p.F162F|PDDC1_uc001lrf.1_Missense_Mutation_p.S140L|PDDC1_uc001lrg.1_RNA|PDDC1_uc009ycg.2_Silent_p.F112F|PDDC1_uc010qwn.1_RNA|PDDC1_uc010qwo.1_RNA|PDDC1_uc010qwp.1_Silent_p.F126F|PDDC1_uc010qwq.1_Silent_p.F76F|PDDC1_uc010qwr.1_Silent_p.F162F|PDDC1_uc010qws.1_Silent_p.F112F	NM_182612	NP_872418	Q8NB37	PDDC1_HUMAN	Parkinson disease 7 domain containing 1	162						extracellular region					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;3.66e-26)|Epithelial(43;2.43e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-19)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCAGGCGGGCGAAGCCGGGGG	0.701													13	28					0	0	0.016723	0	0
MUC5B	727897	broad.mit.edu	37	11	1257673	1257673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:1257673G>A	uc009ycr.1	+	40	5143	c.5017G>A	c.(5017-5019)GGG>AGG	p.G1673R	MUC5B_uc009yct.1_Missense_Mutation_p.G980R|MUC5B_uc001ltb.2_Missense_Mutation_p.G983R|MUC5B_uc001lta.2_Missense_Mutation_p.G648R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	980	VWFD 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGGGCCGGGTGGGGACCCACC	0.647													21	62					0	0	0.021523	0	0
MMP26	56547	broad.mit.edu	37	11	5010961	5010961	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:5010961C>T	uc001lzv.2	+	2	201	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	61					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGCAACAATTCCATCGGAATG	0.522													13	26					0	0	0.013537	0	0
OR51B6	390058	broad.mit.edu	37	11	5372754	5372754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:5372754C>T	uc010qzb.1	+	1	17	c.17C>T	c.(16-18)TCT>TTT	p.S6F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCAATAAGTCTGCTTCCACC	0.438													7	29					0	0	0.001984	0	0
OR51B6	390058	broad.mit.edu	37	11	5373584	5373584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:5373584C>T	uc010qzb.1	+	1	847	c.847C>T	c.(847-849)CCT>TCT	p.P283S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTTTTCCCACCTTTTATGAA	0.383													20	87					0	0	0.008871	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195097	18195097	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:18195097C>T	uc001mnv.1	+	1	714	c.294C>T	c.(292-294)CTC>CTT	p.L98L		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	98	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GCAAAATCCTCGTTTCTGTGA	0.527													32	64					0	0	0.010818	0	0
PTPN5	84867	broad.mit.edu	37	11	18754863	18754863	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:18754863C>T	uc001mpd.2	-	11	1568	c.1137G>A	c.(1135-1137)ACG>ACA	p.T379T	PTPN5_uc001mpb.2_Silent_p.T347T|PTPN5_uc001mpc.2_Silent_p.T379T|PTPN5_uc001mpe.2_Silent_p.T347T|PTPN5_uc010rdj.1_Silent_p.T323T|PTPN5_uc001mpf.2_Silent_p.T355T|PTPN5_uc010rdk.1_Silent_p.T324T	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	379	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						AGTCGGCGACCGTGCTGACGA	0.617													20	66					0	0	0.018920	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955657	18955657	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:18955657G>A	uc001mpg.2	-	1	893	c.675C>T	c.(673-675)TTC>TTT	p.F225F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	225	Helical; Name=6; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CACAGAGGAGGAAGACCAGTA	0.493													10	26					0	0	0.008291	0	0
PAMR1	25891	broad.mit.edu	37	11	35461194	35461194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:35461194G>A	uc001mwg.2	-	8	1124	c.1081C>T	c.(1081-1083)CCG>TCG	p.P361S	PAMR1_uc001mwf.2_Missense_Mutation_p.P378S|PAMR1_uc010rew.1_Missense_Mutation_p.P250S|PAMR1_uc010rex.1_Missense_Mutation_p.P321S	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	361					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						ACCTGCATCGGAAGAACTCTC	0.463													26	104					0	0	0.012213	0	0
SYT13	57586	broad.mit.edu	37	11	45274137	45274137	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:45274137G>A	uc001myq.2	-	4	807	c.681C>T	c.(679-681)CTC>CTT	p.L227L	SYT13_uc009yku.1_Silent_p.L83L	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	227	Cytoplasmic (Potential).|C2 1.					transport vesicle				ovary(1)	1						CCGCCAGGGGGAGCACCAGGC	0.677											OREG0020928	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	59					0	0	0.016522	0	0
OR4C16	219428	broad.mit.edu	37	11	55340013	55340013	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:55340013G>T	uc010rih.1	+	1	410	c.410G>T	c.(409-411)TGG>TTG	p.W137L		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				ATAAGCCAGTGGGTCTGTGGT	0.512													28	84					7.41945e-09	8.49271e-09	0.005443	1	0
OR8H2	390151	broad.mit.edu	37	11	55872668	55872668	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:55872668C>T	uc010riy.1	+	1	150	c.150C>T	c.(148-150)ATC>ATT	p.I50I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TATTGATAATCCGCCTGGACC	0.423										HNSCC(53;0.14)			24	91					0	0	0.008361	0	0
OR8H3	390152	broad.mit.edu	37	11	55889998	55889998	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:55889998C>T	uc001nii.1	+	1	150	c.150C>T	c.(148-150)ATC>ATT	p.I50I		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TATTGATAATCCGCCTGGACC	0.438													22	172					0	0	0.006320	0	0
OR5T2	219464	broad.mit.edu	37	11	56000118	56000118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:56000118G>A	uc010rjc.1	-	1	544	c.544C>T	c.(544-546)CCA>TCA	p.P182S		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	182	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTGATGAGTGGCATGTAGACT	0.448													30	63					0	0	0.013726	0	0
OR5M9	390162	broad.mit.edu	37	11	56230548	56230548	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:56230548G>A	uc010rjj.1	-	1	330	c.330C>T	c.(328-330)GTC>GTT	p.V110V		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CCAGGATATAGACCTCCACGT	0.468													23	32					0	0	0.004656	0	0
SYT7	9066	broad.mit.edu	37	11	61291911	61291911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:61291911G>A	uc001nrv.2	-	6	722	c.716C>T	c.(715-717)TCC>TTC	p.S239F	SYT7_uc009ynr.2_Missense_Mutation_p.S314F	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	239	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						AAGGGGGATGGACACCTCCCC	0.572													18	16					0	0	0.006122	0	0
RASGRP2	10235	broad.mit.edu	37	11	64507144	64507145	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:64507144_64507145CC>TT	uc009ypu.2	-	7	886_887	c.659_660GG>AA	c.(658-660)CGG>CAA	p.R220Q	RASGRP2_uc001oat.2_Missense_Mutation_p.R122Q|RASGRP2_uc001oau.2_Missense_Mutation_p.R75Q|RASGRP2_uc009ypv.2_Missense_Mutation_p.R220Q|RASGRP2_uc009ypw.2_Missense_Mutation_p.R220Q	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	220	Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						TGACCAGGGCCCGCTGCGGGGC	0.634													30	61					0	0	0.004672	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249292	71249292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:71249292G>A	uc001oqr.1	+	1	222	c.191G>A	c.(190-192)GGG>GAG	p.G64E		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	64	9 X 4 AA repeats of C-C-X-P.					extracellular region|keratin filament	structural constituent of epidermis				0						GGCTCCTGTGGGGGCTCCAAG	0.662													67	117					0	0	0.014410	0	0
TRIM49	57093	broad.mit.edu	37	11	89531794	89531794	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:89531794T>C	uc001pdb.2	-	8	1192	c.863A>G	c.(862-864)CAT>CGT	p.H288R		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	288	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CAGAGTAATATGCACTGCAAA	0.303													6	21					0	0	0.001984	0	0
FAT3	120114	broad.mit.edu	37	11	92531925	92531925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:92531925C>T	uc001pdj.3	+	9	5763	c.5746C>T	c.(5746-5748)CCT>TCT	p.P1916S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1916	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGAGGTACCCCCTGAACTGAC	0.418										TCGA Ovarian(4;0.039)			144	233					0	0	0.014410	0	0
MMP27	64066	broad.mit.edu	37	11	102567432	102567432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:102567432C>T	uc001phd.1	-	5	777	c.754G>A	c.(754-756)GAT>AAT	p.D252N		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	252					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CCATTGATATCATCCTGAGAA	0.388													15	24					0	0	0.004990	0	0
MMP13	4322	broad.mit.edu	37	11	102820922	102820922	+	Silent	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:102820922T>A	uc001phl.2	-	6	862	c.834A>T	c.(832-834)CCA>CCT	p.P278P		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	278					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		CTGGCGTTTTTGGATGTTTAG	0.438													27	152					0	0	0.006320	0	0
CASP4	837	broad.mit.edu	37	11	104825616	104825616	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:104825616C>T	uc001pid.1	-	2	193	c.120G>A	c.(118-120)GAG>GAA	p.E40E	CASP4_uc001pib.1_5'UTR|CASP4_uc009yxg.1_5'UTR|CASP4_uc010rux.1_Silent_p.E40E|CASP4_uc010ruy.1_Silent_p.E40E	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	40	CARD.				apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		TCTTTTTTTCCTCTTCCTTCC	0.413													18	34					0	0	0.006122	0	0
NCAM1	4684	broad.mit.edu	37	11	113140939	113140939	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:113140939A>C	uc001pns.2	+	3	333	c.301A>C	c.(301-303)ACC>CCC	p.T101P	uc010rwu.1_3'UTR|NCAM1_uc001pnt.2_5'Flank			P13591	NCAM1_HUMAN	SubName: Full=cDNA FLJ52974, highly similar to Neural cell adhesion molecule 1, 140 kDa isoform;	721	Helical; (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		AGGCCTGAGCACCGGGGCCAT	0.582													39	74					0	0	0.007835	0	0
UBE4A	9354	broad.mit.edu	37	11	118267125	118267125	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:118267125G>A	uc001psw.2	+	20	3300	c.3171G>A	c.(3169-3171)GAG>GAA	p.E1057E	UBE4A_uc001psv.2_Silent_p.E1064E	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	1057					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		GGCTTGCAGAGAGGAAACAAC	0.438													25	38					0	0	0.004656	0	0
SORL1	6653	broad.mit.edu	37	11	121414377	121414377	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr11:121414377G>A	uc001pxx.2	+	13	1886	c.1806G>A	c.(1804-1806)TCG>TCA	p.S602S		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	602	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TCTTTGGCTCGAACAAAGAGA	0.507													27	72					0	0	0.005443	0	0
ANO2	57101	broad.mit.edu	37	12	5708726	5708726	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:5708726C>T	uc001qnm.2	-	21	2229	c.2157G>A	c.(2155-2157)TCG>TCA	p.S719S		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	724	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CTGGATGTTTCGAATGGGCAG	0.453													36	104					0	0	0.006230	0	0
MLF2	8079	broad.mit.edu	37	12	6861216	6861216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:6861216G>A	uc010sfi.1	-	3	118	c.55C>T	c.(55-57)CCC>TCC	p.P19S	MLF2_uc001qqp.2_Missense_Mutation_p.P19S|MLF2_uc009zey.1_Missense_Mutation_p.P19S	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	19					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						ATAGCAAAGGGATCCCTGTGG	0.522											OREG0021633	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	42					0	0	0.004007	0	0
GSG1	83445	broad.mit.edu	37	12	13243460	13243460	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:13243460C>A	uc001rbn.2	-	2	514	c.341G>T	c.(340-342)TGT>TTT	p.C114F	GSG1_uc001rbj.2_Missense_Mutation_p.C101F|GSG1_uc001rbk.2_Missense_Mutation_p.C101F|GSG1_uc001rbl.2_Missense_Mutation_p.C101F|GSG1_uc001rbm.2_Missense_Mutation_p.C101F|GSG1_uc001rbo.2_Missense_Mutation_p.C114F|GSG1_uc001rbp.2_Missense_Mutation_p.C114F|GSG1_uc001rbq.1_Missense_Mutation_p.C114F	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	101						endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		AGTTTCCTCACAGGATAGCCA	0.537													15	54					2.23348e-06	2.5144e-06	0.004007	1	0
GRIN2B	2904	broad.mit.edu	37	12	13716187	13716187	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:13716187G>A	uc001rbt.2	-	13	4164	c.3985C>T	c.(3985-3987)CGA>TGA	p.R1329*		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1329	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCCATGAATCGGCCCTTGTCT	0.597													35	58					0	0	0.015359	0	0
ATF7IP	55729	broad.mit.edu	37	12	14613765	14613765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:14613765C>T	uc001rbw.2	+	9	2653	c.2495C>T	c.(2494-2496)CCA>CTA	p.P832L	ATF7IP_uc010shs.1_3'UTR|ATF7IP_uc001rbu.2_Missense_Mutation_p.P832L|ATF7IP_uc001rbv.1_Missense_Mutation_p.P831L|ATF7IP_uc001rbx.2_Missense_Mutation_p.P831L|ATF7IP_uc010sht.1_3'UTR|ATF7IP_uc001rby.3_Missense_Mutation_p.P832L|ATF7IP_uc001rca.2_Missense_Mutation_p.P832L	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	832					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						ACCAAAAATCCAGTATCCTTG	0.473													19	81					0	0	0.008871	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918972	21918972	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:21918972C>T	uc001rff.2	-	3	1298	c.960G>A	c.(958-960)TGG>TGA	p.W320*		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	320	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	AGCGGTGGCCCCATTGGATCT	0.478													22	49					0	0	0.018920	0	0
ITPR2	3709	broad.mit.edu	37	12	26709227	26709227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:26709227G>A	uc001rhg.2	-	36	5320	c.4903C>T	c.(4903-4905)CCA>TCA	p.P1635S		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1635	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AGCAGTTCTGGACTGTACAAT	0.473													14	89					0	0	0.004990	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46339063	46339063	+	Silent	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:46339063A>G	uc001rox.2	-	6	719	c.432T>C	c.(430-432)AGT>AGC	p.S144S	SFRS2IP_uc001roy.1_Silent_p.S218S	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	144					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		AAACTTTTGCACTTAATAGAT	0.294													23	71					0	0	0.004656	0	0
RND1	27289	broad.mit.edu	37	12	49251972	49251972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:49251972G>A	uc001rsn.2	-	5	609	c.506C>T	c.(505-507)GCT>GTT	p.A169V		NM_014470	NP_055285	Q92730	RND1_HUMAN	GTP-binding protein RHO6 precursor	169					actin filament organization|axon guidance|negative regulation of cell adhesion|neuron remodeling|small GTPase mediated signal transduction	adherens junction|cytoskeleton|cytosol	GTP binding|GTPase activity|receptor binding			ovary(1)	1						TGAGGTGAAAGCTGAGCCTTC	0.552													11	57					0	0	0.010729	0	0
KRT77	374454	broad.mit.edu	37	12	53091531	53091531	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:53091531C>T	uc001saw.2	-	2	722	c.693G>A	c.(691-693)GCG>GCA	p.A231A	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	231	Coil 1B.|Rod.					keratin filament	structural molecule activity			ovary(1)	1						GCATCTGCTCCGCACTGAGCA	0.582													56	203					0	0	0.014410	0	0
KRT78	196374	broad.mit.edu	37	12	53238400	53238400	+	Silent	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:53238400C>A	uc001sbc.1	-	5	928	c.864G>T	c.(862-864)CGG>CGT	p.R288R		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	288	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						TCTCCTCGTACCGGGCGCGGA	0.632													12	67					0.000151284	0.000167889	0.016723	1	0
HNRNPA1	3178	broad.mit.edu	37	12	54676930	54676930	+	Silent	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:54676930T>C	uc001sfl.2	+	8	923	c.819T>C	c.(817-819)GGT>GGC	p.G273G	HNRNPA1_uc001sfm.2_Intron|HNRNPA1_uc009zng.2_Intron|HNRNPA1_uc009znh.2_Intron|HNRNPA1_uc009zni.2_Intron|HNRNPA1_uc001sfn.2_Intron|HNRNPA1_uc001sfo.3_Intron|HNRNPA1_uc001sfp.1_3'UTR|HNRNPA1_uc009znj.1_Intron	NM_031157	NP_112420	P09651	ROA1_HUMAN	heterogeneous nuclear ribonucleoprotein A1	273	Gly-rich.				interspecies interaction between organisms|mRNA transport|nuclear import	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	nucleotide binding|protein binding|single-stranded DNA binding			skin(2)|ovary(1)	3						GTGGACAGGGTTATGGAAACC	0.532													9	20					0	0	0.004482	0	0
LRP1	4035	broad.mit.edu	37	12	57574511	57574511	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:57574511C>G	uc001snd.2	+	33	5914	c.5448C>G	c.(5446-5448)GAC>GAG	p.D1816E		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1816	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCAAGGCTGACGGCTCGGGCT	0.637													13	47					0	0	0.016723	0	0
E2F7	144455	broad.mit.edu	37	12	77421857	77421857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:77421857G>A	uc001sym.3	-	11	2182	c.1946C>T	c.(1945-1947)CCC>CTC	p.P649L	E2F7_uc009zse.2_Missense_Mutation_p.P136L	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	649					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						GTCTTTGAGGGGTATAGATGC	0.453													5	35					0	0	0.014758	0	0
FAM71C	196472	broad.mit.edu	37	12	100042451	100042451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:100042451G>A	uc001tgn.2	+	1	921	c.499G>A	c.(499-501)GAA>AAA	p.E167K	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	167											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		TGTTCACTGGGAAAACCTTGT	0.488													11	23					0	0	0.013537	0	0
MYBPC1	4604	broad.mit.edu	37	12	102036313	102036313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:102036313G>A	uc001tii.2	+	9	809	c.707G>A	c.(706-708)GGC>GAC	p.G236D	MYBPC1_uc001tif.1_Missense_Mutation_p.G249D|MYBPC1_uc001tig.2_Missense_Mutation_p.G261D|MYBPC1_uc010svq.1_Missense_Mutation_p.G223D|MYBPC1_uc001tih.2_Missense_Mutation_p.G261D|MYBPC1_uc001tij.2_Missense_Mutation_p.G236D|MYBPC1_uc010svr.1_Missense_Mutation_p.G236D|MYBPC1_uc010svs.1_Missense_Mutation_p.G236D|MYBPC1_uc010svt.1_Missense_Mutation_p.G224D|MYBPC1_uc010svu.1_Missense_Mutation_p.G217D|MYBPC1_uc001tik.2_Missense_Mutation_p.G210D	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	236					cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						GACCTGCGCGGCATGCTCAAG	0.627													5	36					0	0	0.014758	0	0
PAH	5053	broad.mit.edu	37	12	103234229	103234229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:103234229C>T	uc001tjq.1	-	13	1736	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	422					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	TCCAAGACCTCAATCCTTTGG	0.473													12	90					0	0	0.020292	0	0
STAB2	55576	broad.mit.edu	37	12	104031812	104031812	+	Missense_Mutation	SNP	G	A	A	rs115145720	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:104031812G>A	uc001tjw.2	+	8	914	c.728G>A	c.(727-729)CGA>CAA	p.R243Q		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	243	Extracellular (Potential).|EGF-like 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCATGTTTACGAAAAATCTGC	0.493													24	73					0	0	0.007291	0	0
STAB2	55576	broad.mit.edu	37	12	104078802	104078802	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:104078802C>T	uc001tjw.2	+	27	3123	c.2937C>T	c.(2935-2937)AGC>AGT	p.S979S		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	979	Extracellular (Potential).|EGF-like 10.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTGTCTGGAGCTGTGTTTGTC	0.423													16	135					0	0	0.007413	0	0
KSR2	283455	broad.mit.edu	37	12	117923486	117923486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:117923486C>T	uc001two.2	-	15	2198	c.2143G>A	c.(2143-2145)GGA>AGA	p.G715R		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	744	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGCGTCCGTCCCTTACAGAGG	0.438													18	45					0	0	0.006122	0	0
SRRM4	84530	broad.mit.edu	37	12	119594348	119594348	+	Silent	SNP	C	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:119594348C>G	uc001txa.1	+	13	1873	c.1581C>G	c.(1579-1581)TCC>TCG	p.S527S		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	527	Ser-rich.|Arg-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						CCTCCTCATCCGGCAGCCTCA	0.577													11	12					0	0	0.016723	0	0
WDR66	144406	broad.mit.edu	37	12	122361858	122361858	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:122361858C>T	uc009zxk.2	+	3	851	c.709C>T	c.(709-711)CTG>TTG	p.L237L		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	237							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		AGAGGACATTCTGTTTCAAAA	0.483													19	49					0	0	0.012319	0	0
TMEM132D	121256	broad.mit.edu	37	12	129694081	129694081	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:129694081T>A	uc009zyl.1	-	5	1755	c.1427A>T	c.(1426-1428)GAT>GTT	p.D476V		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	476	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CACGTCTTCATCAGACGATCT	0.542													4	16					0	0	0.009096	0	0
PIWIL1	9271	broad.mit.edu	37	12	130856048	130856048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:130856048C>T	uc001uik.2	+	21	2581	c.2491C>T	c.(2491-2493)CCT>TCT	p.P831S		NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	831	Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TGTTCCTGCTCCTTGCCAGTA	0.438													41	64					0	0	0.007835	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926570	130926570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:130926570C>T	uc001uil.2	-	8	1440	c.1276G>A	c.(1276-1278)GAG>AAG	p.E426K	RIMBP2_uc001uim.2_Missense_Mutation_p.E334K|RIMBP2_uc001uin.1_Missense_Mutation_p.E85K	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	426	Fibronectin type-III 2.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		AACTCCTCCTCGTTGAGGAAG	0.577													16	62					0	0	0.004007	0	0
RIMBP2	23504	broad.mit.edu	37	12	130934809	130934809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:130934809G>A	uc001uil.2	-	6	630	c.466C>T	c.(466-468)CGG>TGG	p.R156W	RIMBP2_uc001uim.2_Missense_Mutation_p.R64W	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	156						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TTGGAATTCCGTTCATTCTCC	0.582													6	14					0	0	0.001984	0	0
ULK1	8408	broad.mit.edu	37	12	132398342	132398342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr12:132398342C>T	uc001uje.2	+	15	1476	c.1208C>T	c.(1207-1209)TCT>TTT	p.S403F		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	403	Interaction with GABARAP and GABARAPL2.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CGGACCCCATCTCCATCCCCA	0.617													11	32					0	0	0.010729	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751504	19751504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr13:19751504C>T	uc009zzj.2	-	4	668	c.619G>A	c.(619-621)GAA>AAA	p.E207K		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	207					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TAGATGGCTTCATTGTCGACC	0.582													65	79					0	0	0.014410	0	0
LNX2	222484	broad.mit.edu	37	13	28141946	28141946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr13:28141946C>T	uc001url.3	-	4	995	c.686G>A	c.(685-687)GGA>GAA	p.G229E	LNX2_uc001urm.1_Missense_Mutation_p.G229E	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	229							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		GGTGATTTCTCCTTCTGGTAA	0.368													32	22					0	0	0.015359	0	0
UBL3	5412	broad.mit.edu	37	13	30346297	30346297	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr13:30346297G>A	uc001usp.2	-	3	1320	c.175C>T	c.(175-177)CGA>TGA	p.R59*		NM_007106	NP_009037	O95164	UBL3_HUMAN	ubiquitin-like 3 precursor	59	Ubiquitin-like.					intracellular|plasma membrane					0		Lung SC(185;0.0281)		all cancers(112;0.0598)|GBM - Glioblastoma multiforme(144;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.147)		TAAATAAGTCGTAGAATATTT	0.373													44	35					0	0	0.014410	0	0
UTP14C	9724	broad.mit.edu	37	13	52603378	52603378	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr13:52603378C>T	uc001vgb.2	+	2	973	c.438C>T	c.(436-438)ATC>ATT	p.I146I	UTP14C_uc001vga.2_3'UTR|UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	146					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		GGGACCCTATCATCCTGAAGA	0.498													11	21					0	0	0.010729	0	0
RNF219	79596	broad.mit.edu	37	13	79233210	79233210	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr13:79233210T>C	uc001vkw.1	-	1	105	c.46A>G	c.(46-48)ATC>GTC	p.I16V	RNF219_uc010afb.1_Intron|RNF219_uc010afc.2_Missense_Mutation_p.I16V	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	16							zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		TGGCACGTGATGGGCAGAGTG	0.582													9	15					0	0	0.010729	0	0
OR11H6	122748	broad.mit.edu	37	14	20692622	20692622	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:20692622C>T	uc010tlc.1	+	1	754	c.754C>T	c.(754-756)CGA>TGA	p.R252*		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	252	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		TGGTGCTGGTCGAACTAAAGC	0.488													15	28					0	0	0.003163	0	0
NOVA1	4857	broad.mit.edu	37	14	26949269	26949269	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:26949269G>A	uc001wpy.2	-	3	679	c.361C>T	c.(361-363)CGA>TGA	p.R121*	NOVA1_uc001wpz.2_Nonsense_Mutation_p.R121*|NOVA1_uc001wqa.2_5'UTR|NOVA1_uc001wqb.2_Nonsense_Mutation_p.R121*	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	124					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GGCATTTCTCGAATTTTTTCT	0.438													7	64					0	0	0.001984	0	0
RPL10L	140801	broad.mit.edu	37	14	47120582	47120582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:47120582C>T	uc001wwg.2	-	1	447	c.358G>A	c.(358-360)GGA>AGA	p.G120R		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	120					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						TGGGGTTTTCCAAAGGCACCT	0.557													18	31					0	0	0.007413	0	0
PAPLN	89932	broad.mit.edu	37	14	73720524	73720524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:73720524C>T	uc010ttx.1	+	11	1320	c.1157C>T	c.(1156-1158)TCC>TTC	p.S386F	PAPLN_uc001xnw.3_Missense_Mutation_p.S359F|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.S386F	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	386	TSP type-1 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CAGTCCCGCTCCGTGTACTGC	0.682													9	67					0	0	0.004482	0	0
YLPM1	56252	broad.mit.edu	37	14	75264967	75264967	+	Silent	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:75264967A>G	uc001xqj.3	+	5	3091	c.2967A>G	c.(2965-2967)CTA>CTG	p.L989L	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	794					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GTATTGGTCTACCCCATTCAG	0.428													4	64					0	0	0.014758	0	0
KIAA1737	85457	broad.mit.edu	37	14	77572085	77572085	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:77572085A>G	uc001xtd.2	+	2	213	c.34A>G	c.(34-36)AGA>GGA	p.R12G	KIAA1737_uc001xtc.1_5'UTR	NM_033426	NP_219494	Q9C0C6	K1737_HUMAN	KIAA1737 protein	12											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0284)		AGAGAGCCCCAGAAGACTCTC	0.483													13	88					0	0	0.016723	0	0
SERPINA5	5104	broad.mit.edu	37	14	95054255	95054255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:95054255G>A	uc001ydm.2	+	3	766	c.556G>A	c.(556-558)GAC>AAC	p.D186N	SERPINA5_uc010ave.2_Missense_Mutation_p.D186N|SERPINA5_uc001ydn.1_Missense_Mutation_p.D186N	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	186					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CAAGATTGTGGACTTGCTTAA	0.478													21	134					0	0	0.012319	0	0
EVL	51466	broad.mit.edu	37	14	100604097	100604097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:100604097G>A	uc001ygt.2	+	11	1285	c.1046G>A	c.(1045-1047)AGC>AAC	p.S349N	EVL_uc001ygv.2_Missense_Mutation_p.S355N|EVL_uc001ygu.2_Missense_Mutation_p.S351N|EVL_uc010avu.2_Missense_Mutation_p.S208N	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	349	EVH2.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				GTGGCAAAGAGCCCCGAAGCT	0.622													28	55					0	0	0.012213	0	0
KIF26A	26153	broad.mit.edu	37	14	104633226	104633226	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:104633226G>A	uc001yos.3	+	5	954	c.954G>A	c.(952-954)AAG>AAA	p.K318K		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	318					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		TGGCCTCCAAGAGGAAGAAGC	0.692													4	8					0	0	0.009096	0	0
AHNAK2	113146	broad.mit.edu	37	14	105416319	105416319	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:105416319G>A	uc010axc.1	-	7	5589	c.5469C>T	c.(5467-5469)TTC>TTT	p.F1823F	AHNAK2_uc001ypx.2_Silent_p.F1723F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1823						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGGCATTTTGAACTTGCTGT	0.612													45	374					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106110139	106110140	+	RNA	DNP	CC	TT	TT			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:106110139_106110140CC>TT	uc010tyt.1	-	3642		c.61111_61112GG>AA			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						CACCTCCACGCCGTCCACGTAC	0.614													14	239					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106586224	106586224	+	RNA	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr14:106586224G>A	uc010tyt.1	-	1286		c.28006C>T			uc001ysv.2_RNA					Parts of antibodies, mostly variable regions.												0						CTCTGGAGATGGTGAATCGGC	0.522													12	69					0	0	0.010729	0	0
C15orf2	23742	broad.mit.edu	37	15	24921633	24921633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:24921633C>T	uc001ywo.2	+	1	1093	c.619C>T	c.(619-621)CCT>TCT	p.P207S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	207					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGCCCTGGGCCTCTGGAGGG	0.602													8	22					0	0	0.003080	0	0
C15orf2	23742	broad.mit.edu	37	15	24922092	24922092	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:24922092C>T	uc001ywo.2	+	1	1552	c.1078C>T	c.(1078-1080)CTG>TTG	p.L360L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	360	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCTCCCCTGCCTGTCTGTTGA	0.517													13	19					0	0	0.013537	0	0
ONECUT1	3175	broad.mit.edu	37	15	53050013	53050013	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:53050013C>A	uc002aci.1	-	2	1265	c.1137G>T	c.(1135-1137)AAG>AAT	p.K379N		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	379					endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		TGCCTCTATCCTTCCCATGTT	0.433													24	163					6.32553e-13	7.41146e-13	0.004656	1	0
TRIP4	9325	broad.mit.edu	37	15	64716244	64716244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:64716244C>T	uc002anm.2	+	10	1416	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F		NM_016213	NP_057297	Q15650	TRIP4_HUMAN	thyroid hormone receptor interactor 4	458					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ligand-dependent nuclear receptor binding|transcription coactivator activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3						GAGGGCAGATCCTGGTACACC	0.418													8	38					0	0	0.003080	0	0
CILP	8483	broad.mit.edu	37	15	65489214	65489215	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:65489214_65489215GG>AA	uc002aon.2	-	9	3590_3591	c.3409_3410CC>TT	c.(3409-3411)CCA>TTA	p.P1137L		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	1137					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GGACTGGGCTGGGGTGCTTTGG	0.624													16	66					0	0	0.004672	0	0
MAP2K1	5604	broad.mit.edu	37	15	66774132	66774132	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:66774132A>T	uc010bhq.2	+	6	1083	c.608A>T	c.(607-609)GAG>GTG	p.E203V	MAP2K1_uc010ujp.1_Missense_Mutation_p.E181V	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	203	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						TCCCGTGGGGAGATCAAGCTC	0.522									Cardiofaciocutaneous_syndrome				21	57					0	0	0.012319	0	0
ARNT2	9915	broad.mit.edu	37	15	80762708	80762708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:80762708C>T	uc002bfr.2	+	4	510	c.344C>T	c.(343-345)TCC>TTC	p.S115F	ARNT2_uc002bfq.2_Missense_Mutation_p.S115F|ARNT2_uc010unm.1_Missense_Mutation_p.S104F|ARNT2_uc002bfs.2_Missense_Mutation_p.S104F	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	115	Helix-loop-helix motif.				central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			CACATGAAGTCCATGAGGGGT	0.587													10	30					0	0	0.010729	0	0
KIAA1199	57214	broad.mit.edu	37	15	81234613	81234613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:81234613G>A	uc002bfw.1	+	26	3894	c.3634G>A	c.(3634-3636)GAG>AAG	p.E1212K	KIAA1199_uc010unn.1_Missense_Mutation_p.E1212K	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1212										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCATTTCTTGGAGGTGAAGAT	0.483													25	77					0	0	0.007291	0	0
BNC1	646	broad.mit.edu	37	15	83926842	83926842	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:83926842C>T	uc002bjt.1	-	5	2425	c.2337G>A	c.(2335-2337)TTG>TTA	p.L779L	BNC1_uc010uos.1_Silent_p.L767L	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	779					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTTCCTGGCTCAATGCTTTTT	0.438													20	63					0	0	0.014323	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84582051	84582051	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:84582051C>T	uc002bjz.3	+	16	2132	c.1908C>T	c.(1906-1908)ATC>ATT	p.I636I	ADAMTSL3_uc010bmt.1_Silent_p.I636I|ADAMTSL3_uc010bmu.1_Silent_p.I636I	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	636						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			AGCTAGACATCCCTCTCCCTG	0.592													6	27					0	0	0.001984	0	0
LRRK1	79705	broad.mit.edu	37	15	101595206	101595206	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:101595206C>T	uc002bwr.2	+	27	4429	c.4110C>T	c.(4108-4110)ATC>ATT	p.I1370I	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1370	Protein kinase.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCTACCAGATCGCCTCGGGCC	0.438													21	57					0	0	0.018920	0	0
CHSY1	22856	broad.mit.edu	37	15	101775495	101775495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr15:101775495G>A	uc002bwt.1	-	3	1091	c.608C>T	c.(607-609)ACC>ATC	p.T203I		NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	203	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TTCTTCCGTGGTGCCCAGGCC	0.577													15	40					0	0	0.020292	0	0
RHOT2	89941	broad.mit.edu	37	16	720126	720126	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:720126C>T	uc002cip.2	+	6	347	c.280C>T	c.(280-282)CGA>TGA	p.R94*	RHOT2_uc010uum.1_3'UTR|RHOT2_uc002ciq.2_5'UTR|RHOT2_uc010bqy.2_5'Flank	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	94	Miro 1.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				TTTTCAGATTCGAACTAAGTG	0.647													12	23					0	0	0.016723	0	0
TMC5	79838	broad.mit.edu	37	16	19455440	19455440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:19455440C>T	uc002dgc.3	+	4	1575	c.826C>T	c.(826-828)CGT>TGT	p.R276C	TMC5_uc010vaq.1_Missense_Mutation_p.R276C|TMC5_uc002dgb.3_Missense_Mutation_p.R276C|TMC5_uc010var.1_Missense_Mutation_p.R276C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	276	Extracellular (Potential).					integral to membrane				skin(1)	1						GCCCTCATTTCGTCACAGGAG	0.438													9	74					0	0	0.006214	0	0
TMC5	79838	broad.mit.edu	37	16	19488818	19488818	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:19488818C>A	uc002dgc.3	+	13	2896	c.2147C>A	c.(2146-2148)ACC>AAC	p.T716N	TMC5_uc010vaq.1_Missense_Mutation_p.T664N|TMC5_uc002dgb.3_Missense_Mutation_p.T716N|TMC5_uc010var.1_Missense_Mutation_p.T716N|TMC5_uc002dgd.1_Missense_Mutation_p.T470N|TMC5_uc002dge.3_Missense_Mutation_p.T470N|TMC5_uc002dgf.3_Missense_Mutation_p.T399N|TMC5_uc002dgg.3_Missense_Mutation_p.T357N	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	716	Helical; (Potential).					integral to membrane				skin(1)	1						TGGCTCAACACCGTGGCCCTG	0.383													17	76					5.03518e-11	5.8246e-11	0.007413	1	0
SCNN1G	6340	broad.mit.edu	37	16	23226481	23226481	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:23226481C>T	uc002dlm.1	+	13	1780	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	547	Helical; (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TCTGCGTCATCGAGATCATCG	0.552													7	37					0	0	0.004482	0	0
SCNN1B	6338	broad.mit.edu	37	16	23379177	23379177	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:23379177G>A	uc002dln.2	+	5	953	c.777G>A	c.(775-777)CGG>CGA	p.R259R		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	259	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	TTTCTTTTAGGAACTTCACGT	0.537													15	80					0	0	0.003163	0	0
PRSS36	146547	broad.mit.edu	37	16	31153278	31153278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:31153278C>T	uc002ebd.2	-	11	1584	c.1525G>A	c.(1525-1527)GAC>AAC	p.D509N	PRSS36_uc010vff.1_Missense_Mutation_p.D284N|PRSS36_uc010vfg.1_Missense_Mutation_p.D504N|PRSS36_uc010vfh.1_Missense_Mutation_p.D509N	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	509	Peptidase S1 2.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						CAACGCGAGTCATTCTGCAGC	0.542													11	60					0	0	0.016723	0	0
SLC5A2	6524	broad.mit.edu	37	16	31497118	31497118	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:31497118G>A	uc002ecf.3	+	4	391	c.372G>A	c.(370-372)ACG>ACA	p.T124T	SLC5A2_uc010car.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	124	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						GGGTCATCACGATGCCACAGT	0.622													26	61					0	0	0.021523	0	0
AHSP	51327	broad.mit.edu	37	16	31539907	31539907	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:31539907G>A	uc002ecj.2	+	3	289	c.204G>A	c.(202-204)CAG>CAA	p.Q68Q		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	68					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						AGGCTCTGCAGGAGCTTCGGC	0.562													4	46					0	0	0.001168	0	0
CHD9	80205	broad.mit.edu	37	16	53358667	53358667	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:53358667C>T	uc002ehb.2	+	38	8718	c.8554C>T	c.(8554-8556)CAG>TAG	p.Q2852*	CHD9_uc002egy.2_Nonsense_Mutation_p.Q2836*|CHD9_uc002ehc.2_Nonsense_Mutation_p.Q2837*|CHD9_uc002ehf.2_Nonsense_Mutation_p.Q1950*|CHD9_uc010cbw.2_Nonsense_Mutation_p.Q918*	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2852					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AATTAAAGATCAGGAAGACAA	0.393													9	13					0	0	0.006214	0	0
CES1	1066	broad.mit.edu	37	16	55857517	55857517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:55857517C>T	uc002eim.2	-	4	589	c.481G>A	c.(481-483)GAA>AAA	p.E161K	CES1_uc002eil.2_Missense_Mutation_p.E162K|CES1_uc002ein.2_Missense_Mutation_p.E161K	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	161					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	ACCACGTTTTCATGGGCAGCA	0.567													11	72					0	0	0.020292	0	0
NFATC3	4775	broad.mit.edu	37	16	68191931	68191931	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:68191931C>T	uc002evo.1	+	4	1771	c.1561C>T	c.(1561-1563)CTG>TTG	p.L521L	NFATC3_uc010vkl.1_Silent_p.L42L|NFATC3_uc010vkm.1_Silent_p.L42L|NFATC3_uc010vkn.1_Silent_p.L42L|NFATC3_uc010vko.1_Silent_p.L42L|NFATC3_uc010vkp.1_Silent_p.L42L|NFATC3_uc010vkq.1_Silent_p.L42L|NFATC3_uc002evl.2_Silent_p.L42L|NFATC3_uc002evk.2_Silent_p.L521L|NFATC3_uc002evm.1_Silent_p.L521L|NFATC3_uc002evn.1_Silent_p.L521L|NFATC3_uc010vkr.1_Silent_p.L42L|NFATC3_uc010vks.1_Silent_p.L42L|NFATC3_uc010vkt.1_Silent_p.L42L|NFATC3_uc010vku.1_Silent_p.L42L|NFATC3_uc010vkv.1_Silent_p.L42L|NFATC3_uc010vkw.1_Silent_p.L42L|NFATC3_uc010vkx.1_Silent_p.L42L|NFATC3_uc010vky.1_Silent_p.L42L|NFATC3_uc010vkz.1_Silent_p.L42L|NFATC3_uc010vla.1_Silent_p.L42L|NFATC3_uc010vlb.1_Silent_p.L42L|NFATC3_uc010vlc.1_Silent_p.L42L	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	521	RHD.				inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TACAAAAGTTCTGGAAATTCC	0.358													5	26					0	0	0.014758	0	0
TUSC5	286753	broad.mit.edu	37	17	1183438	1183438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:1183438C>T	uc002fsi.1	+	1	482	c.143C>T	c.(142-144)TCG>TTG	p.S48L		NM_172367	NP_758955	Q8IXB3	TUSC5_HUMAN	LOST1	48					response to biotic stimulus	integral to membrane				skin(2)	2				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AAGACCCTCTCGGGGCCTCTG	0.642													23	42					0	0	0.014323	0	0
DVL2	1856	broad.mit.edu	37	17	7132546	7132546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:7132546G>A	uc002gez.1	-	8	1147	c.865C>T	c.(865-867)CGG>TGG	p.R289W	DVL2_uc010vtr.1_Missense_Mutation_p.R283W|DVL2_uc010vts.1_3'UTR	NM_004422	NP_004413	O14641	DVL2_HUMAN	dishevelled 2	289	PDZ.				canonical Wnt receptor signaling pathway involved in regulation of cell proliferation|intracellular signal transduction|neural tube closure|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|segment specification|transcription from RNA polymerase II promoter	cytosol|nucleus|plasma membrane	frizzled binding|identical protein binding|signal transducer activity			lung(1)|kidney(1)	2						CCGTCTCCCCGCTCATTGCTC	0.592													15	59					0	0	0.004007	0	0
PIK3R5	23533	broad.mit.edu	37	17	8792134	8792134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:8792134C>T	uc002glt.2	-	10	1037	c.970G>A	c.(970-972)GAA>AAA	p.E324K	PIK3R5_uc010vuz.1_Missense_Mutation_p.E324K|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Silent_p.R272R|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	324				DILQEILLKEQELLQPGILGDDEEEEEEEEEVEEDLETDGH CAERDSLLSTSSLASHDSTLSLASSQASG -> GNIEGDPG PRRPDSAGLASLQTSCRKSCSRNRSYSSQGSWEMMKRRERR RRRWRRTWKLTGTVPREIPCS (in Ref. 6; AAW63121).	platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						tcctcctcttcctcctcttcA	0.463													11	21					0	0	0.008291	0	0
MYH1	4619	broad.mit.edu	37	17	10397696	10397696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:10397696G>A	uc002gmo.2	-	39	5736	c.5642C>T	c.(5641-5643)TCC>TTC	p.S1881F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1881	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCTCTTGTAGGATTTCACCTT	0.433													34	68					0	0	0.017118	0	0
MYH2	4620	broad.mit.edu	37	17	10440656	10440656	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:10440656C>T	uc010coi.2	-	16	1919	c.1791G>A	c.(1789-1791)CTG>CTA	p.L597L	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.L597L|MYH2_uc010coj.2_Silent_p.L597L	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	597	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGTTCTTCTCCAGCCAGCCAG	0.527													37	69					0	0	0.019004	0	0
FBXW10	10517	broad.mit.edu	37	17	18653121	18653121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:18653121G>A	uc002guk.2	+	3	989	c.757G>A	c.(757-759)GAT>AAT	p.D253N	FBXW10_uc002guj.2_Missense_Mutation_p.D253N|FBXW10_uc002gul.2_Missense_Mutation_p.D253N|FBXW10_uc010cqh.1_Missense_Mutation_p.D253N	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	253										ovary(1)	1						GCCAGGGTACGATCCCTGCAA	0.483													41	68					0	0	0.014410	0	0
LGALS9	3965	broad.mit.edu	37	17	25967796	25967796	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:25967796C>T	uc002gzp.2	+	3	448	c.330C>T	c.(328-330)TTC>TTT	p.F110F	LGALS9_uc002gzq.2_Silent_p.F110F|LGALS9_uc002gzr.2_Silent_p.F53F|LGALS9_uc010waa.1_Silent_p.F53F|LGALS9_uc002gzs.2_Silent_p.F110F	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	110	Galectin 1.				positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		GCTCAGATTTCAAGGTGAGCA	0.557													18	49					0	0	0.007413	0	0
KRT36	8689	broad.mit.edu	37	17	39646009	39646009	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:39646009G>A	uc002hwt.2	-	1	108	c.108C>T	c.(106-108)TCC>TCT	p.S36S		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	36	Head.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GGACCCTGCAGGAGCCCACAG	0.632													16	54					0	0	0.004007	0	0
KCNH4	23415	broad.mit.edu	37	17	40321526	40321526	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:40321526C>T	uc002hzb.2	-	9	1892	c.1559G>A	c.(1558-1560)TGG>TAG	p.W520*		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	520	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GTTGACGGCCCACGTGGTCTG	0.642													5	39					0	0	0.014758	0	0
WNK4	65266	broad.mit.edu	37	17	40946892	40946892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:40946892C>T	uc002ibj.2	+	14	2474	c.2453C>T	c.(2452-2454)TCC>TTC	p.S818F	WNK4_uc010wgx.1_Missense_Mutation_p.S482F|WNK4_uc002ibk.1_Missense_Mutation_p.S590F	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	818					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		AACCCATTTTCCCCTGGAACC	0.587													15	61					0	0	0.008871	0	0
MPP3	4356	broad.mit.edu	37	17	41907113	41907113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:41907113G>A	uc002iei.3	-	7	516	c.350C>T	c.(349-351)CCC>CTC	p.P117L	MPP3_uc002ieh.2_Missense_Mutation_p.P142L|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Missense_Mutation_p.P117L|MPP3_uc010wik.1_Missense_Mutation_p.P142L|MPP3_uc010czj.1_3'UTR	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	117	L27 2.				signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		CGGGAGAACGGGGTCAAAATT	0.552													19	54					0	0	0.010504	0	0
GOSR2	9570	broad.mit.edu	37	17	45012411	45012411	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:45012411T>C	uc002ila.2	+	5	426	c.353T>C	c.(352-354)ATA>ACA	p.I118T	GOSR2_uc010wkh.1_Missense_Mutation_p.I118T|GOSR2_uc002iky.2_Missense_Mutation_p.I118T|GOSR2_uc002ikz.2_Missense_Mutation_p.I118T	NM_004287	NP_004278	O14653	GOSR2_HUMAN	golgi SNAP receptor complex member 2 isoform A	118	Cytoplasmic (Potential).				cellular membrane fusion|ER to Golgi vesicle-mediated transport|protein transport	Golgi membrane|integral to membrane	transporter activity			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(9;0.102)			GACACCACCATACCAATGGAC	0.463													19	77					0	0	0.010504	0	0
ABCC3	8714	broad.mit.edu	37	17	48757161	48757161	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:48757161G>A	uc002isl.2	+	26	3788	c.3708G>A	c.(3706-3708)GTG>GTA	p.V1236V	ABCC3_uc002isn.2_5'UTR	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1236	ABC transmembrane type-1 2.|Helical; Name=17; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TTGGCCAGGTGACATTTGCTC	0.512													15	36					0	0	0.004007	0	0
PCTP	58488	broad.mit.edu	37	17	53844802	53844802	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:53844802A>G	uc002iul.3	+	2	357	c.248A>G	c.(247-249)CAG>CGG	p.Q83R	PCTP_uc002ium.3_Missense_Mutation_p.Q11R|PCTP_uc010dcg.2_Missense_Mutation_p.Q83R|PCTP_uc010dch.2_RNA	NM_021213	NP_067036	Q9UKL6	PPCT_HUMAN	phosphatidylcholine transfer protein isoform 1	83	START.					cytosol	phosphatidylcholine binding|phosphatidylcholine transmembrane transporter activity			lung(1)	1			BRCA - Breast invasive adenocarcinoma(1;0.00207)			CAATGGGACCAGTATGTTAAA	0.269													5	50					0	0	0.014758	0	0
MPO	4353	broad.mit.edu	37	17	56358064	56358064	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:56358064C>A	uc002ivu.1	-	1	233	c.56G>T	c.(55-57)TGG>TTG	p.W19L		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	19					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	ACCCCCAGCCCAGCAAGGTCC	0.602													5	34					0.000602214	0.000662921	0.014758	1	0
INTS2	57508	broad.mit.edu	37	17	59996818	59996818	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:59996818T>A	uc002izn.2	-	5	692	c.616A>T	c.(616-618)AAT>TAT	p.N206Y	INTS2_uc002izm.2_Missense_Mutation_p.N198Y	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	206					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						CAGGCACCATTTCTAACATGT	0.363													5	8					0	0	0.001168	0	0
SCN4A	6329	broad.mit.edu	37	17	62043903	62043903	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:62043903C>T	uc002jds.1	-	7	1115	c.1038G>A	c.(1036-1038)GGG>GGA	p.G346G		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	346	I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	AGTAGAAGTTCCCTTTGGGAG	0.582													7	19					0	0	0.001984	0	0
C17orf28	283987	broad.mit.edu	37	17	72955984	72955984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:72955984G>A	uc002jmj.3	-	8	1149	c.1000C>T	c.(1000-1002)CGT>TGT	p.R334C	C17orf28_uc010wrs.1_Missense_Mutation_p.R133C|C17orf28_uc002jmk.2_Missense_Mutation_p.R333C	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	334						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					GCCTCCTCACGATGGATGCGG	0.612													9	119					0	0	0.010729	0	0
ITGB4	3691	broad.mit.edu	37	17	73745050	73745050	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:73745050C>T	uc002jpg.2	+	27	3427	c.3240C>T	c.(3238-3240)CAC>CAT	p.H1080H	ITGB4_uc002jph.2_Silent_p.H1080H|ITGB4_uc002jpi.3_Silent_p.H1080H|ITGB4_uc002jpj.2_Silent_p.H1080H	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1080	Cytoplasmic (Potential).|Calx-beta.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCGTTTCCACGTCCAGCTCA	0.647													10	30					0	0	0.008291	0	0
PGS1	9489	broad.mit.edu	37	17	76396874	76396874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:76396874C>T	uc002jvm.2	+	6	830	c.818C>T	c.(817-819)TCC>TTC	p.S273F	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_5'UTR|PGS1_uc002jvo.2_RNA|PGS1_uc002jvp.1_5'UTR	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	273					phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			GGGGATGTGTCCCTGCAGCTG	0.617													13	43					0	0	0.016723	0	0
DNAH17	8632	broad.mit.edu	37	17	76501416	76501416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:76501416C>T	uc010wtu.1	-	5	967	c.790G>A	c.(790-792)GAG>AAG	p.E264K						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ACCATGTACTCGTCCTCCTTG	0.562													8	41					0	0	0.004482	0	0
ACTG1	71	broad.mit.edu	37	17	79478433	79478433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:79478433C>T	uc002kaj.1	-	3	608	c.583G>A	c.(583-585)GAG>AAG	p.E195K	ACTG1_uc002kah.1_Missense_Mutation_p.E73K|ACTG1_uc002kai.1_Missense_Mutation_p.E152K|ACTG1_uc002kak.1_Missense_Mutation_p.E195K|ACTG1_uc010wun.1_Missense_Mutation_p.E195K|ACTG1_uc002kal.1_Missense_Mutation_p.E195K|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	195					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			TAGCCTCGCTCAGTGAGGATC	0.637													12	57					0	0	0.010729	0	0
TBCD	6904	broad.mit.edu	37	17	80726350	80726350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr17:80726350C>T	uc002kfz.2	+	5	620	c.490C>T	c.(490-492)CCT>TCT	p.P164S	TBCD_uc002kfx.1_Missense_Mutation_p.P147S|TBCD_uc002kfy.1_Missense_Mutation_p.P164S	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	164					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CTGCCTGATCCCTTTTGATTT	0.473													57	151					0	0	0.014410	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258538	9258538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr18:9258538C>T	uc002knv.2	+	9	5530	c.5273C>T	c.(5272-5274)TCA>TTA	p.S1758L	ANKRD12_uc002knw.2_Missense_Mutation_p.S1735L|ANKRD12_uc002knx.2_Missense_Mutation_p.S1735L|ANKRD12_uc010dkx.1_Missense_Mutation_p.S1465L	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1758						nucleus				ovary(2)|central_nervous_system(1)	3						ACACTATTATCAGAAAAAGAC	0.368													6	27					0	0	0.001168	0	0
MIR320C1	100302135	broad.mit.edu	37	18	19263529	19263529	+	RNA	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr18:19263529G>T	hsa-mir-320c-1|MI0003778	+			c.59G>T			ABHD3_uc002ktl.2_Intron|ABHD3_uc002ktm.2_Intron|ABHD3_uc010xao.1_Intron																	0						GAAAAGCTGGGTTGAGAGGGT	0.308													6	29					2.7689e-08	3.15619e-08	0.001984	1	0
C18orf8	29919	broad.mit.edu	37	18	21110198	21110198	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr18:21110198T>A	uc010xax.1	+	19	1726	c.1605T>A	c.(1603-1605)TGT>TGA	p.C535*	C18orf8_uc002kul.2_RNA|C18orf8_uc010xay.1_Nonsense_Mutation_p.C159*|NPC1_uc010dlu.1_Intron	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	535	Mic1.									ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TTCAGGCTTGTCTGCTGTTAT	0.388													22	86					0	0	0.016522	0	0
DSC1	1823	broad.mit.edu	37	18	28719834	28719834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr18:28719834C>T	uc002kwn.2	-	11	1802	c.1540G>A	c.(1540-1542)GAA>AAA	p.E514K	DSC1_uc002kwm.2_Missense_Mutation_p.E514K	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	514	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CAGTTATCTTCATCCCCTAAC	0.299													5	29					0	0	0.001168	0	0
DTNA	1837	broad.mit.edu	37	18	32398132	32398132	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr18:32398132C>T	uc010dmn.1	+	7	715	c.714C>T	c.(712-714)TTC>TTT	p.F238F	DTNA_uc002kxu.2_Silent_p.F238F|DTNA_uc010xbx.1_Intron|DTNA_uc002kxv.3_Silent_p.F238F|DTNA_uc002kxw.2_Silent_p.F238F|DTNA_uc002kxx.2_Silent_p.F238F|DTNA_uc010dmj.2_Silent_p.F238F|DTNA_uc002kxz.2_Silent_p.F238F|DTNA_uc002kxy.2_Silent_p.F238F|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Silent_p.F238F|DTNA_uc002kyb.3_Silent_p.F238F|DTNA_uc010dmm.2_Silent_p.F238F|DTNA_uc010xby.1_5'UTR|DTNA_uc010dmo.2_5'Flank|DTNA_uc002kyd.3_5'Flank|DTNA_uc010xbz.1_5'Flank|DTNA_uc010xca.1_5'Flank|DTNA_uc002kye.2_5'Flank	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	238	Interaction with MAGEE1 (By similarity).|ZZ-type.				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						CCTTAGTCTTCCATCCGGTTG	0.438													17	62					0	0	0.008871	0	0
NETO1	81832	broad.mit.edu	37	18	70532428	70532428	+	Missense_Mutation	SNP	C	T	T	rs34743368	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr18:70532428C>T	uc002lkw.2	-	2	361	c.77G>A	c.(76-78)GGA>GAA	p.G26E	NETO1_uc002lkx.1_Missense_Mutation_p.G25E|NETO1_uc002lky.1_Missense_Mutation_p.G26E|NETO1_uc002lkz.2_Missense_Mutation_p.G25E	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	26	Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CACACCTGTTCCTTTCTTGGT	0.338													4	17					0	0	0.014758	0	0
ARRDC5	645432	broad.mit.edu	37	19	4896833	4896833	+	Silent	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:4896833G>T	uc002mbm.2	-	2	351	c.351C>A	c.(349-351)CCC>CCA	p.P117P		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	117					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		AAGGAAGCCTGGGAGGTAAGT	0.448													16	85					1.52009e-12	1.77724e-12	0.003163	1	0
ACSBG2	81616	broad.mit.edu	37	19	6147624	6147624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:6147624G>A	uc002mef.1	+	3	462	c.235G>A	c.(235-237)GAA>AAA	p.E79K	ACSBG2_uc002mee.1_5'UTR|ACSBG2_uc002meg.1_Missense_Mutation_p.E79K|ACSBG2_uc002meh.1_Missense_Mutation_p.E79K|ACSBG2_uc002mei.1_Missense_Mutation_p.E29K|ACSBG2_uc010xiz.1_Missense_Mutation_p.E79K	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	79					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						CAAAAAGTGGGAAATTCTGAA	0.383													31	122					0	0	0.010818	0	0
MUC16	94025	broad.mit.edu	37	19	8966725	8966725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:8966725C>T	uc002mkp.2	-	81	43432	c.43228G>A	c.(43228-43230)GAA>AAA	p.E14410K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E1210K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14508	SEA 16.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCAGAAATTCCTCATAGATG	0.572													3	6					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9048512	9048512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:9048512C>T	uc002mkp.2	-	5	33323	c.33119G>A	c.(33118-33120)GGA>GAA	p.G11040E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11042	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCACCACTCCTGGTACCTC	0.483													15	63					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9049889	9049889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:9049889G>A	uc002mkp.2	-	5	31946	c.31742C>T	c.(31741-31743)CCG>CTG	p.P10581L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10583	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGAATAACCGGACTTCTCTC	0.483													14	76					0	0	0.016723	0	0
MUC16	94025	broad.mit.edu	37	19	9069682	9069682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:9069682C>T	uc002mkp.2	-	3	17968	c.17764G>A	c.(17764-17766)GAA>AAA	p.E5922K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5924	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTTTCTTCCACAGAGGGA	0.493													17	89					0	0	0.004007	0	0
MUC16	94025	broad.mit.edu	37	19	9069742	9069742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:9069742C>T	uc002mkp.2	-	3	17908	c.17704G>A	c.(17704-17706)GAG>AAG	p.E5902K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5904	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGTGGTCTCCTCTGAGTGT	0.527													22	113					0	0	0.012319	0	0
MUC16	94025	broad.mit.edu	37	19	9084514	9084514	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:9084514G>C	uc002mkp.2	-	1	7505	c.7301C>G	c.(7300-7302)ACC>AGC	p.T2434S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2434	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGAGAATAGGTGTTACTGGA	0.512													6	27					0	0	0.001984	0	0
CACNA1A	773	broad.mit.edu	37	19	13563692	13563692	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:13563692C>T	uc010dze.2	-	3	773	c.537G>A	c.(535-537)ACG>ACA	p.T179T	CACNA1A_uc002mwy.3_Silent_p.T179T	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	179	Helical; Name=S3 of repeat I; (Potential).|I.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCACTTACCCCGTTAGCACCA	0.522													52	129					0	0	0.014410	0	0
NOTCH3	4854	broad.mit.edu	37	19	15271640	15271640	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:15271640A>G	uc002nan.2	-	33	6875	c.6799T>C	c.(6799-6801)TCC>CCC	p.S2267P		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	2267	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GTGGATTCGGACCAGTCTGAG	0.667													11	52					0	0	0.008291	0	0
AKAP8L	26993	broad.mit.edu	37	19	15511962	15511962	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:15511962C>A	uc002naw.1	-	5	914	c.815G>T	c.(814-816)CGA>CTA	p.R272L	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Missense_Mutation_p.R211L|AKAP8L_uc002nay.1_Missense_Mutation_p.R272L|AKAP8L_uc002naz.2_Missense_Mutation_p.R120L	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	272						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						TCCACTCACTCGGAAGTCGGC	0.647													58	102					9.79885e-19	1.15305e-18	0.014410	1	0
CPAMD8	27151	broad.mit.edu	37	19	17038952	17038952	+	Silent	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:17038952G>T	uc002nfb.2	-	25	3410	c.3378C>A	c.(3376-3378)ACC>ACA	p.T1126T		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1079						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AGCCCCAGCCGGTGGAAAAGC	0.602													15	57					1.5739e-10	1.8168e-10	0.004007	1	0
MAST3	23031	broad.mit.edu	37	19	18245776	18245776	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:18245776C>T	uc002nhz.3	+	16	1767	c.1767C>T	c.(1765-1767)TTC>TTT	p.F589F		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	589	Protein kinase.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						AGGAACTCTTCGGTCAGGTGG	0.627													30	48					0	0	0.021022	0	0
ZNF431	170959	broad.mit.edu	37	19	21365899	21365899	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:21365899T>G	uc002npp.2	+	5	940	c.793T>G	c.(793-795)TGT>GGT	p.C265G	ZNF431_uc010ecq.2_Missense_Mutation_p.C174G|ZNF431_uc010ecr.2_Missense_Mutation_p.C266G	NM_133473	NP_597730	Q8TF32	ZN431_HUMAN	zinc finger protein 431	265	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2						ATGTGAAGAATGTGGCAAAGC	0.383													4	30					0	0	0.009096	0	0
ZNF529	57711	broad.mit.edu	37	19	37038205	37038205	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:37038205C>A	uc002oeh.3	-	5	1457	c.1255G>T	c.(1255-1257)GAA>TAA	p.E419*	ZNF529_uc010xth.1_Nonsense_Mutation_p.E419*|ZNF529_uc010xti.1_Nonsense_Mutation_p.E401*|ZNF529_uc002oeg.3_Nonsense_Mutation_p.E314*	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					TAGGGTTTTTCACCAGTATGA	0.368													23	136					1.50039e-11	1.74301e-11	0.012319	1	0
ZNF607	84775	broad.mit.edu	37	19	38189545	38189545	+	Missense_Mutation	SNP	C	T	T	rs149751145	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:38189545C>T	uc002ohc.1	-	5	2083	c.1487G>A	c.(1486-1488)CGC>CAC	p.R496H	ZNF607_uc002ohb.1_Missense_Mutation_p.R495H	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	496	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			ATGAACTCTGCGATGTATAGT	0.393													17	77					0	0	0.004007	0	0
SPINT2	10653	broad.mit.edu	37	19	38782538	38782538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:38782538G>A	uc002ohr.1	+	7	982	c.651G>A	c.(649-651)ATG>ATA	p.M217I	SPINT2_uc002ohs.1_Missense_Mutation_p.M160I	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	217	Helical; (Potential).				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GAGCCTCCATGGTCTACCTGA	0.627													17	18					0	0	0.008871	0	0
CATSPERG	57828	broad.mit.edu	37	19	38848949	38848949	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:38848949C>G	uc002oih.3	+	12	1434	c.1347C>G	c.(1345-1347)ATC>ATG	p.I449M	CATSPERG_uc002oig.3_Missense_Mutation_p.I409M|CATSPERG_uc002oif.3_Missense_Mutation_p.I89M|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	449	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TCTACCACATCCCAGAATTCA	0.567													9	65					0	0	0.006214	0	0
HNRNPL	3191	broad.mit.edu	37	19	39308097	39308097	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:39308097G>A	uc002ojj.1	-	8	1175	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I	ECH1_uc002oji.2_Silent_p.I156I|ECH1_uc010xuk.1_Silent_p.I156I|HNRNPL_uc010ege.1_Silent_p.I158I|ECH1_uc002ojh.2_Silent_p.I36I	NM_001005335	NP_001005335	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	Error:Variant_position_missing_in_P14866_after_alignment					nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			TCACCCTCTCGATGACGTTGA	0.592													9	17					0	0	0.008291	0	0
HNRNPL	3191	broad.mit.edu	37	19	39328048	39328048	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:39328048T>A	uc010xul.1	-	12	1698	c.1687A>T	c.(1687-1689)AAC>TAC	p.N563Y	HNRNPL_uc010ege.1_Missense_Mutation_p.N111Y|HNRNPL_uc002ojj.1_Missense_Mutation_p.N219Y|HNRNPL_uc002ojo.1_Missense_Mutation_p.N141Y|HNRNPL_uc002ojk.2_Missense_Mutation_p.N219Y|HNRNPL_uc002ojl.2_Missense_Mutation_p.N219Y|HNRNPL_uc010xum.1_Missense_Mutation_p.N430Y	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	563					nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			TGGTAATGGTTCAGGAAGCCC	0.532													7	73					0	0	0.001984	0	0
FCGBP	8857	broad.mit.edu	37	19	40368750	40368750	+	Missense_Mutation	SNP	G	A	A	rs141203655	by1000genomes	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:40368750G>A	uc002omp.3	-	28	12606	c.12598C>T	c.(12598-12600)CGG>TGG	p.R4200W		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4200	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACGTCTACCCGCCAGTTCCAG	0.602													33	294					0	0	0.013726	0	0
SPTBN4	57731	broad.mit.edu	37	19	41081460	41081460	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:41081460C>T	uc002ony.2	+	36	7766	c.7680C>T	c.(7678-7680)AGC>AGT	p.S2560S	SPTBN4_uc002onz.2_Silent_p.S2560S|SPTBN4_uc010egx.2_Silent_p.S1303S|SHKBP1_uc002oob.2_5'Flank|SHKBP1_uc002ooc.2_5'Flank|SHKBP1_uc002ood.2_5'Flank|SHKBP1_uc010xvl.1_5'Flank|SHKBP1_uc002ooe.2_5'Flank|SHKBP1_uc002oof.2_5'Flank|SHKBP1_uc010xvm.1_5'Flank	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2560					actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCAGGGCCAGCGGGCGCAGGA	0.612													7	10					0	0	0.001984	0	0
MEGF8	1954	broad.mit.edu	37	19	42880626	42880626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:42880626C>T	uc002otl.3	+	41	8671	c.8036C>T	c.(8035-8037)CCC>CTC	p.P2679L	MEGF8_uc002otm.3_Missense_Mutation_p.P2287L|MEGF8_uc002otn.3_Missense_Mutation_p.P340L	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2746	Gly-rich.|Cytoplasmic (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CCCTGGGGACCCATGGGAGGG	0.721													11	11					0	0	0.010729	0	0
IRGC	56269	broad.mit.edu	37	19	44222942	44222942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:44222942G>A	uc002oxh.2	+	2	379	c.232G>A	c.(232-234)GAG>AAG	p.E78K		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	78						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				GCGTGGCCTGGAGGCCGAGGA	0.682													48	58					0	0	0.014410	0	0
NKPD1	284353	broad.mit.edu	37	19	45655765	45655765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:45655765C>T	uc010xxi.1	-	4	1930	c.1930G>A	c.(1930-1932)GAC>AAC	p.D644N		NM_198478	NP_940880			NTPase, KAP family P-loop domain containing 1												0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		CCCCCAAAGTCCCCCTGCTGC	0.706													7	8					0	0	0.001984	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969245	47969245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:47969245G>A	uc002pgx.2	-	2	694	c.416C>T	c.(415-417)TCC>TTC	p.S139F	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.S139F	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	139	Alpha-1.|Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CTCAGGTGCGGAGGAGCCCAG	0.627													11	28					0	0	0.010729	0	0
LMTK3	114783	broad.mit.edu	37	19	49001529	49001529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:49001529C>T	uc002pjk.2	-	12	2884	c.2884G>A	c.(2884-2886)GAC>AAC	p.D962N		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GCTCTCTGGTCCCCGTTCTCC	0.647													9	43					0	0	0.004482	0	0
GPR32	2854	broad.mit.edu	37	19	51274125	51274125	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:51274125A>C	uc010ycf.1	+	1	268	c.268A>C	c.(268-270)ATG>CTG	p.M90L		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	90	Helical; Name=2; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TGCCGATTTCATGCTCTCACT	0.562													10	52					0	0	0.008291	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51995075	51995075	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:51995075C>T	uc002pwx.1	-	8	1664	c.1608G>A	c.(1606-1608)CTG>CTA	p.L536L	SIGLEC12_uc002pww.1_Silent_p.L418L|SIGLEC12_uc010eoy.1_Silent_p.L263L	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	536	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGGATTCAATCAGGGGTCCCT	0.617													25	40					0	0	0.018920	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002435	52002435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:52002435C>T	uc002pwx.1	-	4	1180	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	SIGLEC12_uc002pww.1_Missense_Mutation_p.G257E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.G102E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	375	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGTGCCATCTCCTTGGAAGAC	0.567													21	78					0	0	0.014323	0	0
FPR1	2357	broad.mit.edu	37	19	52250245	52250245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:52250245C>T	uc002pxq.2	-	2	98	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	1	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	AATTTGTCTCCATCTTGTCTG	0.498													6	24					0	0	0.001168	0	0
FPR3	2359	broad.mit.edu	37	19	52327436	52327436	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:52327436G>A	uc002pxt.1	+	2	619	c.435G>A	c.(433-435)GTG>GTA	p.V145V		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	145	Helical; Name=4; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CCAAGAGGGTGATGACGGGAC	0.478													17	59					0	0	0.004007	0	0
LILRA3	11026	broad.mit.edu	37	19	54802712	54802712	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:54802712G>A	uc002qfd.2	-	5	794	c.729C>T	c.(727-729)ACC>ACT	p.T243T	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Silent_p.T179T	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	243	Ig-like C2-type 3.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CACACTGGAAGGTCAGCTTCT	0.612													18	13					0	0	0.004990	0	0
NLRP4	147945	broad.mit.edu	37	19	56369294	56369294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:56369294C>T	uc002qmd.3	+	3	957	c.535C>T	c.(535-537)CGG>TGG	p.R179W	NLRP4_uc002qmf.2_Missense_Mutation_p.R104W|NLRP4_uc010etf.2_Missense_Mutation_p.R10W	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	179	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CAAGATCTTTCGGGATAGGTT	0.498													48	109					0	0	0.014410	0	0
NLRP8	126205	broad.mit.edu	37	19	56490917	56490917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr19:56490917G>A	uc002qmh.2	+	9	3105	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	NLRP8_uc010etg.2_Missense_Mutation_p.E993K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	1012						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAAGAAGAGAGAAGAGGTCAT	0.423													24	76					0	0	0.004656	0	0
RRM2	6241	broad.mit.edu	37	2	10263898	10263898	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:10263898C>T	uc002rah.2	+	4	545	c.354C>T	c.(352-354)TCC>TCT	p.S118S		NM_001034	NP_001025	P31350	RIR2_HUMAN	ribonucleotide reductase M2 polypeptide isoform	118					deoxyribonucleoside diphosphate metabolic process|deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol	ribonucleoside-diphosphate reductase activity|transition metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.188)|OV - Ovarian serous cystadenocarcinoma(76;0.221)		ACTGGGAATCCCTGAAACCCG	0.438													18	62					0	0	0.006122	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698846	17698846	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:17698846C>T	uc002rcl.1	-	1	861	c.837G>A	c.(835-837)GCG>GCA	p.A279A	RAD51AP2_uc010exn.1_Silent_p.A270A	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	279										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TCTTTTTCTTCGCTATTTCCT	0.358													11	56					0	0	0.008291	0	0
OTOF	9381	broad.mit.edu	37	2	26700540	26700540	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:26700540C>T	uc002rhk.2	-	19	2419	c.2292G>A	c.(2290-2292)CTG>CTA	p.L764L	OTOF_uc002rhh.2_Silent_p.L17L|OTOF_uc002rhi.2_Silent_p.L74L|OTOF_uc002rhj.2_Silent_p.L17L	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	764	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCAGCTCCTCCAGGACGCCCC	0.622													8	21					0	0	0.004482	0	0
CIB4	130106	broad.mit.edu	37	2	26852293	26852293	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:26852293G>A	uc002rhm.2	-	3	200	c.171C>T	c.(169-171)TCC>TCT	p.S57S		NM_001029881	NP_001025052	A0PJX0	CIB4_HUMAN	calcium and integrin binding family member 4	57							calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAGCTGGCAGGGAGCTGACCT	0.607													5	11					0	0	0.014758	0	0
XDH	7498	broad.mit.edu	37	2	31600050	31600050	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:31600050G>A	uc002rnv.1	-	14	1375	c.1296C>T	c.(1294-1296)GCC>GCT	p.A432A		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	432					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGGTTACCTTGGCAATGTCAT	0.507													7	66					0	0	0.003080	0	0
REL	5966	broad.mit.edu	37	2	61147183	61147183	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:61147183C>G	uc002sam.1	+	8	1085	c.861C>G	c.(859-861)TAC>TAG	p.Y287*	REL_uc002san.1_Nonsense_Mutation_p.Y287*	NM_002908	NP_002899	Q04864	REL_HUMAN	v-rel reticuloendotheliosis viral oncogene	287	RHD.				positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	all_hematologic(2;0.0797)	Ovarian(717;0.0728)	LUSC - Lung squamous cell carcinoma(5;6.2e-08)|Lung(5;1.65e-06)|Epithelial(17;0.064)|all cancers(80;0.221)			CAGATACTTACGGCAATAAAG	0.308			A		Hodgkin Lymphoma								14	23					0	0	0.008871	0	0
CLEC4F	165530	broad.mit.edu	37	2	71036427	71036427	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:71036427G>A	uc002shf.2	-	7	1823	c.1746C>T	c.(1744-1746)CCC>CCT	p.P582P	CLEC4F_uc010yqv.1_Intron	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	582	Extracellular (Potential).|C-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TCCAGGGACAGGGAGGGGTGT	0.547													6	33					0	0	0.003080	0	0
TET3	200424	broad.mit.edu	37	2	74326449	74326449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:74326449C>T	uc002skb.3	+	8	2909	c.2909C>T	c.(2908-2910)CCC>CTC	p.P970L		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	970							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GGCAAGATTCCCGAGGATGAG	0.602													8	20					0	0	0.004482	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459500	107459500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:107459500C>T	uc002tdq.2	-	2	1053	c.934G>A	c.(934-936)GAG>AAG	p.E312K	ST6GAL2_uc002tdr.2_Missense_Mutation_p.E312K|ST6GAL2_uc002tds.3_Missense_Mutation_p.E312K	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	312	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CCTATTTCCTCGCCCAAGGAA	0.662													7	11					0	0	0.003080	0	0
IL1F8	27177	broad.mit.edu	37	2	113783752	113783752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:113783752G>A	uc002tiq.1	-	5	423	c.319C>T	c.(319-321)CAC>TAC	p.H107Y		NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	107					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						atgcatgtgtgaattccaact	0													18	47					0	0	0.008871	0	0
THSD7B	80731	broad.mit.edu	37	2	138208414	138208414	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:138208414G>A	uc002tva.1	+	14	2867	c.2867_splice	c.e14-1	p.G956_splice	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTTTCTGTCAGGTTACATTCA	0.348													7	31					0	0	0.001984	0	0
LRP1B	53353	broad.mit.edu	37	2	141200090	141200090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:141200090G>A	uc002tvj.1	-	66	11369	c.10397C>T	c.(10396-10398)TCA>TTA	p.S3466L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3466	Extracellular (Potential).|LDL-receptor class A 24.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGCCTCGTCTGATGCATCTGC	0.463										TSP Lung(27;0.18)			16	58					0	0	0.003163	0	0
ACVR2A	92	broad.mit.edu	37	2	148674898	148674898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:148674898G>A	uc002twg.2	+	7	988	c.719G>A	c.(718-720)GGA>GAA	p.G240E	ACVR2A_uc010zbn.1_Missense_Mutation_p.G132E|ACVR2A_uc002twh.2_Missense_Mutation_p.G240E	NM_001616	NP_001607	P27037	AVR2A_HUMAN	activin A receptor, type IIA precursor	240	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			stomach(8)|large_intestine(2)|lung(1)|breast(1)|kidney(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.0969)		AGTTTGCCTGGAATGAAGCAT	0.378													10	24					0	0	0.006214	0	0
LASS6	253782	broad.mit.edu	37	2	169404121	169404121	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:169404121G>A	uc002ueb.1	+	2	310	c.186G>A	c.(184-186)CCG>CCA	p.P62P	LASS6_uc002uec.1_Silent_p.P62P	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	62	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						TAGCCAAACCGTGCGCCATAG	0.388													9	40					0	0	0.004482	0	0
RBM45	129831	broad.mit.edu	37	2	178990886	178990886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:178990886C>T	uc002ulv.2	+	9	1500	c.1408C>T	c.(1408-1410)CGG>TGG	p.R470W		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	472					cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			ATCTAACAAACGGCAAAGAAC	0.348													7	37					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179432352	179432352	+	Silent	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:179432352A>T	uc010zfg.1	-	275	71027	c.70803T>A	c.(70801-70803)GCT>GCA	p.A23601A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.A17296A|TTN_uc010zfi.1_Silent_p.A17229A|TTN_uc010zfj.1_Silent_p.A17104A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24528							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTATTGCACCAGCTGCATTCT	0.383													16	69					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179616023	179616023	+	Silent	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:179616023A>G	uc002unb.2	-	46	11328	c.11104T>C	c.(11104-11106)TTG>CTG	p.L3702L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAACGTTGCAACTTCACTTTG	0.338													14	72					0	0	0.003163	0	0
CCDC141	285025	broad.mit.edu	37	2	179720995	179720995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:179720995C>T	uc002unf.1	-	8	1186	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	377	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TGCATTTTTTCAGCATACATA	0.294													21	66					0	0	0.018920	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801324	185801324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:185801324C>T	uc002uph.2	+	4	1795	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	401						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GACATTGGCCCCTTCAAATAC	0.383													23	80					0	0	0.012319	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175879	207175879	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:207175879G>A	uc002vbp.2	+	5	6877	c.6627G>A	c.(6625-6627)GAG>GAA	p.E2209E		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2209							nucleic acid binding|zinc ion binding			ovary(3)	3						AAGCTTCAGAGAAACAGTCAA	0.363													14	25					0	0	0.003163	0	0
VIL1	7429	broad.mit.edu	37	2	219294077	219294077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:219294077G>A	uc002via.2	+	7	702	c.637G>A	c.(637-639)GGA>AGA	p.G213R	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.G213R|VIL1_uc002vic.1_Missense_Mutation_p.G213R	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	213	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGTGGTGGACGGAGAGAATGA	0.642													29	61					0	0	0.008361	0	0
SCG2	7857	broad.mit.edu	37	2	224462845	224462845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:224462845C>T	uc002vnm.2	-	2	1289	c.1156G>A	c.(1156-1158)GAC>AAC	p.D386N		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	386					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		ACAGGAAGGTCAAGCTCCCGC	0.478													20	62					0	0	0.007413	0	0
COL4A4	1286	broad.mit.edu	37	2	227915713	227915713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:227915713G>A	uc010zlt.1	-	33	3784	c.3130C>T	c.(3130-3132)CCA>TCA	p.P1044S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1044	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GGAAGTCCTGGAAAACCAATG	0.522													30	85					0	0	0.013726	0	0
COL4A4	1286	broad.mit.edu	37	2	227920714	227920714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:227920714C>T	uc010zlt.1	-	30	3317	c.2663G>A	c.(2662-2664)GGA>GAA	p.G888E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	888	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ACCTGGGATTCCTGGGAGGCC	0.607													19	50					0	0	0.006122	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524112	24524112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:24524112G>A	uc002wtw.1	+	2	1012	c.379G>A	c.(379-381)GAG>AAG	p.E127K		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	127	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						AGACAGCCTCGAGTACCCGGA	0.597													26	85					0	0	0.021523	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333													6	79					0	0	0.003080	0	0
TOP1	7150	broad.mit.edu	37	20	39658074	39658074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:39658074G>A	uc002xjl.2	+	2	283	c.37G>A	c.(37-39)GAA>AAA	p.E13K	TOP1_uc010gge.1_RNA|TOP1_uc010ggd.1_5'UTR	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	13					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	TTTCCAGATCGAAGCGGATTT	0.507			T	NUP98	AML*								11	17					0	0	0.008291	0	0
PTPRT	11122	broad.mit.edu	37	20	40727063	40727063	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:40727063G>T	uc002xkg.2	-	27	4028	c.3844C>A	c.(3844-3846)CAG>AAG	p.Q1282K	PTPRT_uc010ggj.2_Missense_Mutation_p.Q1301K|PTPRT_uc010ggi.2_Missense_Mutation_p.Q485K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1282	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CCTCCTACCTGGGCAGTGTCC	0.602													11	64					9.05144e-12	1.05375e-11	0.016723	1	0
R3HDML	140902	broad.mit.edu	37	20	42965964	42965964	+	Missense_Mutation	SNP	G	A	A	rs138012908		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:42965964G>A	uc002xls.1	+	1	339	c.167G>A	c.(166-168)CGC>CAC	p.R56H		NM_178491	NP_848586	Q9H3Y0	CRSPL_HUMAN	R3H domain containing-like precursor	56						extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			CGCCGGAAGCGCCACATCTCT	0.592													23	49					0	0	0.016522	0	0
TNNC2	7125	broad.mit.edu	37	20	44453161	44453161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:44453161C>T	uc002xpr.2	-	3	238	c.172G>A	c.(172-174)GCC>ACC	p.A58T		NM_003279	NP_003270	P02585	TNNC2_HUMAN	fast skeletal muscle troponin C	58	EF-hand 2.				muscle filament sliding|regulation of muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(115;0.0122)				TCGATGATGGCGTCCAGCTCC	0.637													8	74					0	0	0.004482	0	0
SPATA2	9825	broad.mit.edu	37	20	48522716	48522716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr20:48522716C>T	uc010gie.2	-	3	1353	c.1003G>A	c.(1003-1005)GTG>ATG	p.V335M	SPATA2_uc002xuw.2_Missense_Mutation_p.V335M|SPATA2_uc010zyn.1_Missense_Mutation_p.V198M	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	335					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			TACAGATCCACGTCATCCTGA	0.657													17	89					0	0	0.006122	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31798008	31798008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr21:31798008G>A	uc002yob.1	-	1	223	c.223C>T	c.(223-225)CCC>TCC	p.P75S		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	75	3.|5 X 10 AA approximate repeats.					intermediate filament				ovary(1)|lung(1)	2						GTGTGGCAGGGGCTGGACTCA	0.567													13	23					0	0	0.013537	0	0
ZNF295	49854	broad.mit.edu	37	21	43411399	43411399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr21:43411399G>A	uc002zab.3	-	3	3020	c.2806C>T	c.(2806-2808)CCA>TCA	p.P936S	ZNF295_uc002yzz.3_Missense_Mutation_p.P735S|ZNF295_uc002yzy.3_Missense_Mutation_p.P936S|ZNF295_uc002zaa.3_Missense_Mutation_p.P936S	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	936					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CAAATAAATGGTTTCACAGAG	0.502													31	31					0	0	0.009535	0	0
BCL2L13	23786	broad.mit.edu	37	22	18171776	18171776	+	Missense_Mutation	SNP	G	A	A	rs61741787	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:18171776G>A	uc002zmw.2	+	4	472	c.254G>A	c.(253-255)CGT>CAT	p.R85H	BCL2L13_uc002zmu.2_Missense_Mutation_p.R85H|BCL2L13_uc002zmv.2_Missense_Mutation_p.R85H|BCL2L13_uc002zmx.2_Intron|BCL2L13_uc002zmy.2_Missense_Mutation_p.R85H|BCL2L13_uc010gqy.2_Intron|BCL2L13_uc011agk.1_Intron|BCL2L13_uc010gqz.2_5'UTR|BCL2L13_uc002zmz.2_5'UTR	NM_015367	NP_056182	Q9BXK5	B2L13_HUMAN	BCL2-like 13 (apoptosis facilitator)	85					induction of apoptosis	integral to membrane|mitochondrial membrane|nucleus	caspase activator activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4		all_epithelial(15;0.123)		Lung(27;0.199)		GGCTTTGACCGTCACACTTCT	0.378													5	60					0	0	0.014758	0	0
LOC96610	96610	broad.mit.edu	37	22	23104854	23104854	+	RNA	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:23104854G>A	uc011aim.1	+	220		c.11258G>A								Parts of antibodies, mostly variable regions.												0						AGCTGCTCTGGAGATGTACTG	0.572													11	27					0	0	0.008291	0	0
C22orf43	51233	broad.mit.edu	37	22	23959805	23959805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:23959805C>T	uc002zxf.2	-	7	753	c.476G>A	c.(475-477)CGA>CAA	p.R159Q		NM_016449	NP_057533	Q6PGQ1	CV043_HUMAN	hypothetical protein LOC51233	159	Asp-rich.									skin(1)	1						atcttcaCTTCGTGGTAGGCA	0.363													18	40					0	0	0.006122	0	0
UPB1	51733	broad.mit.edu	37	22	24909338	24909338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:24909338G>A	uc003aaf.2	+	5	627	c.506G>A	c.(505-507)CGA>CAA	p.R169Q	UPB1_uc003aae.2_Missense_Mutation_p.R101Q|UPB1_uc011ajt.1_Missense_Mutation_p.R169Q	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	169	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					ATCCTGGAACGAGACAGCGAG	0.488													21	38					0	0	0.016522	0	0
DEPDC5	9681	broad.mit.edu	37	22	32241015	32241015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:32241015C>T	uc003als.2	+	30	2928	c.2786C>T	c.(2785-2787)TCC>TTC	p.S929F	DEPDC5_uc011als.1_Missense_Mutation_p.S860F|DEPDC5_uc011alu.1_Missense_Mutation_p.S938F|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.S929F|DEPDC5_uc003alu.2_Missense_Mutation_p.S378F|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Missense_Mutation_p.S259F|DEPDC5_uc003alw.2_Missense_Mutation_p.S227F|DEPDC5_uc011alx.1_Intron|DEPDC5_uc010gwk.2_5'UTR	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	929					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TTAATTGAGTCCCTGAAGTTC	0.557													14	45					0	0	0.004007	0	0
SLC5A1	6523	broad.mit.edu	37	22	32487710	32487710	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:32487710G>T	uc003amc.2	+	11	1473	c.1241G>T	c.(1240-1242)CGC>CTC	p.R414L	SLC5A1_uc011alz.1_Missense_Mutation_p.R287L	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	414	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						GCCAAGGTCCGCAAGAGAGCA	0.522													8	59					0.000157383	0.000174303	0.003080	1	0
IFT27	11020	broad.mit.edu	37	22	37159965	37159966	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:37159965_37159966GG>AA	uc003apv.1	-	5	712_713	c.349_350CC>TT	c.(349-351)CCA>TTA	p.P117L	IFT27_uc003apu.1_Missense_Mutation_p.P116L|IFT27_uc003apw.1_Missense_Mutation_p.P117L	NM_006860	NP_006851	Q9BW83	IFT27_HUMAN	RAB, member of RAS oncogene family-like 4	117					small GTPase mediated signal transduction	intraflagellar transport particle B|microtubule-based flagellum	GTP binding				0						GCCCGTACCTGGGAGAGAGATG	0.46													18	27					0	0	0.004672	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121393	38121393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:38121393G>A	uc003atr.2	+	7	3101	c.2830G>A	c.(2830-2832)GGT>AGT	p.G944S	TRIOBP_uc003atu.2_Missense_Mutation_p.G772S|TRIOBP_uc003atq.1_Missense_Mutation_p.G944S|TRIOBP_uc003ats.1_Missense_Mutation_p.G772S	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	944					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GCCAACCCAAGGTGACAGGCC	0.642													14	111					0	0	0.003163	0	0
CBX6	23466	broad.mit.edu	37	22	39262804	39262804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:39262804C>T	uc003awl.2	-	5	712	c.649G>A	c.(649-651)GAG>AAG	p.E217K		NM_014292	NP_055107	O95503	CBX6_HUMAN	chromobox homolog 6	217					chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	PcG protein complex					0	Melanoma(58;0.04)					AGGACGCTCTCGCTGAACTTC	0.502													6	68					0	0	0.001168	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41747575	41747575	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr22:41747575C>T	uc003azw.2	+	17	2175	c.1959C>T	c.(1957-1959)CAC>CAT	p.H653H	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	669					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						GCATGACCCACGAAGACATCG	0.607													6	14					0	0	0.003080	0	0
TGFBR2	7048	broad.mit.edu	37	3	30713878	30713878	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:30713878C>T	uc003ceo.2	+	4	1585	c.1203C>T	c.(1201-1203)TCC>TCT	p.S401S	TGFBR2_uc003cen.2_Silent_p.S426S	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	401	Protein kinase.|Cytoplasmic (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						TTGGGCTTTCCCTGCGTCTGG	0.557													71	200					0	0	0.014410	0	0
CMTM8	152189	broad.mit.edu	37	3	32398872	32398872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:32398872G>A	uc003cex.2	+	2	449	c.155G>A	c.(154-156)GGG>GAG	p.G52E	CMTM8_uc010hfu.2_Intron	NM_178868	NP_849199	Q8IZV2	CKLF8_HUMAN	CKLF-like MARVEL transmembrane domain containing	52	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						CAGGTTCTGGGGCTGCTGGTA	0.463													14	117					0	0	0.004990	0	0
MYD88	4615	broad.mit.edu	37	3	38180379	38180379	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:38180379A>T	uc003chx.2	+	1	411	c.227A>T	c.(226-228)CAA>CTA	p.Q76L	ACAA1_uc003cht.2_5'Flank|ACAA1_uc003chu.2_5'Flank|ACAA1_uc010hgy.2_5'Flank|ACAA1_uc010hgz.2_5'Flank|ACAA1_uc003chv.2_5'Flank|MYD88_uc011ayh.1_Missense_Mutation_p.Q76L|MYD88_uc011ayi.1_Missense_Mutation_p.Q76L|MYD88_uc011ayj.1_Missense_Mutation_p.Q76L|MYD88_uc011ayk.1_Missense_Mutation_p.Q76L|MYD88_uc011ayl.1_Missense_Mutation_p.Q76L	NM_002468	NP_002459	Q99836	MYD88_HUMAN	myeloid differentiation primary response gene	63	Death.				3'-UTR-mediated mRNA stabilization|anti-apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-17 production|positive regulation of interleukin-23 production|positive regulation of interleukin-6 production|regulation of inflammatory response|response to interleukin-1|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|intrinsic to membrane|plasma membrane	death receptor binding|TIR domain binding|transmembrane receptor activity			haematopoietic_and_lymphoid_tissue(93)|breast(1)	94				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GAGATCCGGCAACTGGAGACA	0.657			Mis 		ABC-DLBCL								12	86					0	0	0.016723	0	0
ZNF501	115560	broad.mit.edu	37	3	44776381	44776381	+	Silent	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:44776381T>C	uc003cnu.1	+	3	869	c.468T>C	c.(466-468)CAT>CAC	p.H156H	ZNF501_uc003cnv.1_Intron	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	156	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		AGAGAAGTCATTCTGGAGATA	0.413													28	40					0	0	0.006320	0	0
LRRC2	79442	broad.mit.edu	37	3	46563038	46563038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:46563038G>A	uc010hji.2	-	8	1404	c.1040C>T	c.(1039-1041)GCC>GTC	p.A347V	LRRC2_uc003cpu.3_Missense_Mutation_p.A347V	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	347										ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		TTCAATATAGGCTTTCATAAC	0.318													17	26					0	0	0.004007	0	0
AMIGO3	386724	broad.mit.edu	37	3	49756613	49756613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:49756613C>T	uc003cxj.2	-	1	626	c.286G>A	c.(286-288)GAA>AAA	p.E96K	RNF123_uc003cxh.2_Intron|RNF123_uc003cxi.2_Intron	NM_198722	NP_942015	Q86WK7	AMGO3_HUMAN	adhesion molecule with Ig-like domain 3	96	Extracellular (Potential).|LRR 2.				heterophilic cell-cell adhesion	integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GCATCTAGTTCGTTGTGGTCT	0.667											OREG0015572	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	71					0	0	0.007835	0	0
SEMA3F	6405	broad.mit.edu	37	3	50224060	50224060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:50224060G>A	uc003cyj.2	+	18	2026	c.1828G>A	c.(1828-1830)GTG>ATG	p.V610M	SEMA3F_uc003cyk.2_Missense_Mutation_p.V579M	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	610	Ig-like C2-type.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CAAGAATGCCGTGGAGTCTGT	0.627													10	62					0	0	0.013537	0	0
DOCK3	1795	broad.mit.edu	37	3	51263126	51263126	+	Silent	SNP	C	T	T	rs139890793	by1000genomes	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:51263126C>T	uc011bds.1	+	15	1322	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	433	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AGGGGGATTTCGAGAGAGGAG	0.463													42	121					0	0	0.008740	0	0
GNL3	26354	broad.mit.edu	37	3	52721303	52721303	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:52721303G>T	uc003dfd.2	+	3	287	c.114G>T	c.(112-114)AAG>AAT	p.K38N	PBRM1_uc003dey.2_5'Flank|GNL3_uc011beh.1_RNA|GNL3_uc003dfe.2_Missense_Mutation_p.K26N|GNL3_uc003dff.2_Missense_Mutation_p.K26N|SNORD19_uc003dfg.1_5'Flank	NM_014366	NP_055181	Q9BVP2	GNL3_HUMAN	guanine nucleotide binding protein-like 3	38	Basic (By similarity).				regulation of cell proliferation	nucleolus	GTP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;6.75e-05)|Kidney(197;0.000611)|KIRC - Kidney renal clear cell carcinoma(197;0.000773)|OV - Ovarian serous cystadenocarcinoma(275;0.048)		AGGCTAAAAAGCGGGGTCACA	0.393													25	75					2.21704e-12	2.58654e-12	0.016522	1	0
NEK4	6787	broad.mit.edu	37	3	52773633	52773633	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:52773633T>G	uc003dfq.3	-	14	2300	c.2111A>C	c.(2110-2112)GAA>GCA	p.E704A	NEK4_uc011bej.1_Missense_Mutation_p.E615A|NEK4_uc003dfr.2_Missense_Mutation_p.E658A	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	704					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		GGCATTAATTTCATTTGTCTG	0.373													19	120					0	0	0.007413	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64617208	64617208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:64617208C>T	uc003dmg.2	-	16	2344	c.2312G>A	c.(2311-2313)CGA>CAA	p.R771Q	ADAMTS9_uc011bfo.1_Missense_Mutation_p.R743Q|ADAMTS9_uc003dmh.1_Missense_Mutation_p.R600Q|ADAMTS9_uc003dmk.1_Missense_Mutation_p.R771Q	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	771	Spacer.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		AGCTGGAATTCGGACCACAGT	0.423													164	341					0	0	0.014410	0	0
KBTBD8	84541	broad.mit.edu	37	3	67058673	67058673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:67058673C>T	uc003dmy.2	+	4	1723	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F	KBTBD8_uc011bfv.1_Missense_Mutation_p.S115F	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	557	Kelch 5.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AGAAAAAATTCCCTTTACCAA	0.433													18	74					0	0	0.007413	0	0
ROBO2	6092	broad.mit.edu	37	3	77666722	77666722	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:77666722C>T	uc003dpy.3	+	22	3995	c.3352C>T	c.(3352-3354)CTG>TTG	p.L1118L	ROBO2_uc003dpz.2_Silent_p.L1122L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.L1122L|ROBO2_uc003dqa.2_Silent_p.L245L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1118	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ACACCAAGGTCTGGAAGATGA	0.453													12	81					0	0	0.016723	0	0
HTR1F	3355	broad.mit.edu	37	3	88040197	88040197	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:88040197C>T	uc003dqr.2	+	2	456	c.298C>T	c.(298-300)CTG>TTG	p.L100L		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	100	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	TGACATTTGGCTGAGTGTTGA	0.478													11	45					0	0	0.010729	0	0
EPHA6	285220	broad.mit.edu	37	3	97167461	97167461	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:97167461T>C	uc010how.1	+	7	1824	c.1781T>C	c.(1780-1782)GTC>GCC	p.V594A	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_5'UTR|EPHA6_uc003drs.3_5'UTR|EPHA6_uc003drr.3_5'UTR|EPHA6_uc003drt.2_5'UTR|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	499	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GCCCCCAGTGTCATCATCACA	0.443													5	81					0	0	0.014758	0	0
DZIP3	9666	broad.mit.edu	37	3	108363543	108363543	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:108363543C>T	uc003dxd.2	+	14	2096	c.1674C>T	c.(1672-1674)ATC>ATT	p.I558I	DZIP3_uc003dxf.1_Silent_p.I558I|DZIP3_uc011bhm.1_Silent_p.I9I|DZIP3_uc003dxe.1_Silent_p.I558I|DZIP3_uc003dxg.1_Silent_p.I281I	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	558					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TTGAGAATATCTCCCTTGATT	0.378													22	68					0	0	0.014323	0	0
SLC9A10	285335	broad.mit.edu	37	3	111887770	111887770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:111887770C>T	uc003dyu.2	-	25	3413	c.3191G>A	c.(3190-3192)CGA>CAA	p.R1064Q	SLC9A10_uc011bhu.1_Missense_Mutation_p.R327Q|SLC9A10_uc010hqc.2_Missense_Mutation_p.R1016Q	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	1064					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATAAGTTTTTCGTAACAGACA	0.323													19	110					0	0	0.012319	0	0
ADPRH	141	broad.mit.edu	37	3	119306718	119306718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:119306718C>T	uc003ecs.2	+	5	1365	c.1067C>T	c.(1066-1068)TCC>TTC	p.S356F	ADPRH_uc010hqv.2_Missense_Mutation_p.S356F|ADPRH_uc011bjb.1_Missense_Mutation_p.S249F|ADPRH_uc003ect.2_Missense_Mutation_p.S356F	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	356					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		ACTGTAATTTCCCTTTAGGGA	0.398													23	88					0	0	0.014323	0	0
GPR156	165829	broad.mit.edu	37	3	119886712	119886712	+	Missense_Mutation	SNP	G	A	A	rs150101992		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:119886712G>A	uc011bjf.1	-	9	1612	c.1612C>T	c.(1612-1614)CGG>TGG	p.R538W	GPR156_uc011bjg.1_Missense_Mutation_p.R534W	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	538	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		ACCCGTGACCGCCGCTCTGGG	0.592													36	199					0	0	0.021022	0	0
HGD	3081	broad.mit.edu	37	3	120394693	120394693	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:120394693C>T	uc003edw.2	-	2	403	c.33G>A	c.(31-33)GGG>GGA	p.G11G		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	11					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		AACACTCATTCCCAAATCCAG	0.428													26	82					0	0	0.007291	0	0
CASR	846	broad.mit.edu	37	3	121980881	121980881	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:121980881C>T	uc003eev.3	+	4	1371	c.999C>T	c.(997-999)TTC>TTT	p.F333F	CASR_uc003eew.3_Silent_p.F333F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	333	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCCGGGAATTCCTGAAGAAGG	0.537													15	47					0	0	0.003163	0	0
MYLK	4638	broad.mit.edu	37	3	123451746	123451746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:123451746C>T	uc003ego.2	-	11	1795	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	MYLK_uc011bjw.1_Missense_Mutation_p.E505K|MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Missense_Mutation_p.E505K|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Missense_Mutation_p.E329K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	505					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TACTCACTTTCCACTTGGAGG	0.572													6	22					0	0	0.001168	0	0
KALRN	8997	broad.mit.edu	37	3	123987868	123987868	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:123987868G>A	uc003ehg.2	+	5	856	c.729G>A	c.(727-729)GAG>GAA	p.E243E	KALRN_uc010hrv.1_Silent_p.E243E|KALRN_uc003ehf.1_Silent_p.E243E|KALRN_uc011bjy.1_Silent_p.E243E	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	243	Spectrin 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCCCTGTGGAGGAGCTGGACC	0.627													8	17					0	0	0.004482	0	0
ABTB1	80325	broad.mit.edu	37	3	127399303	127399303	+	Silent	SNP	C	T	T	rs138384733	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:127399303C>T	uc003ejt.2	+	12	1510	c.1422C>T	c.(1420-1422)ATC>ATT	p.I474I	ABTB1_uc003ejr.2_Silent_p.I332I|ABTB1_uc003ejs.2_Silent_p.I449I|ABTB1_uc003eju.2_Silent_p.I332I|ABTB1_uc010hsm.2_Silent_p.I201I	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	474	Potential.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						TCGTGTCCATCGGTCTGGACT	0.627													6	6					0	0	0.001168	0	0
COL29A1	256076	broad.mit.edu	37	3	130162394	130162394	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:130162394C>T	uc010htj.1	+	36	7056	c.6562C>T	c.(6562-6564)CAA>TAA	p.Q2188*	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Nonsense_Mutation_p.Q227*	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2188	Nonhelical region.				axon guidance|cell adhesion	collagen					0						AGAGAATATTCAAAATGATGG	0.378													13	41					0	0	0.016723	0	0
COL6A6	131873	broad.mit.edu	37	3	130289768	130289768	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:130289768G>A	uc010htl.2	+	6	2539	c.2508G>A	c.(2506-2508)GTG>GTA	p.V836V		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	836	VWFA 5.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TTGGCTTAGTGAAAAAAGCTG	0.413													13	47					0	0	0.016723	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133674036	133674036	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:133674036C>T	uc003eqa.3	-	4	673	c.399G>A	c.(397-399)GGG>GGA	p.G133G	SLCO2A1_uc003eqb.3_Intron|SLCO2A1_uc011blv.1_Intron|SLCO2A1_uc010htw.1_5'UTR	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	133	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GGCTGTTGTTCCCTGCAACGA	0.632													12	30					0	0	0.010729	0	0
IL20RB	53833	broad.mit.edu	37	3	136729035	136729035	+	Silent	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:136729035T>C	uc003eri.1	+	7	1155	c.906T>C	c.(904-906)CCT>CCC	p.P302P	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_Silent_p.P160P|uc003erk.1_5'Flank	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	302	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)	1						TGATGTCTCCTGAGGAACTCC	0.498													10	90					0	0	0.008291	0	0
DZIP1L	199221	broad.mit.edu	37	3	137811342	137811342	+	Silent	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:137811342T>C	uc003erq.2	-	5	1116	c.753A>G	c.(751-753)GAA>GAG	p.E251E	DZIP1L_uc003err.1_Silent_p.E251E	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	251	Potential.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						ATTTATCAAATTCTTTCTTAG	0.318													60	436					0	0	0.014410	0	0
MED12L	116931	broad.mit.edu	37	3	151082837	151082837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:151082837G>A	uc003eyp.2	+	20	2961	c.2923G>A	c.(2923-2925)GAT>AAT	p.D975N	MED12L_uc011bnz.1_Missense_Mutation_p.D835N|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.D138N	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	975					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTTGCGATGGGATCCAGACTT	0.418													48	134					0	0	0.014410	0	0
MME	4311	broad.mit.edu	37	3	154886358	154886358	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:154886358C>T	uc010hvr.1	+	19	2069	c.1858C>T	c.(1858-1860)CAG>TAG	p.Q620*	MME_uc003fab.1_Nonsense_Mutation_p.Q620*|MME_uc003fac.1_Nonsense_Mutation_p.Q620*|MME_uc003fad.1_Nonsense_Mutation_p.Q620*|MME_uc003fae.1_Nonsense_Mutation_p.Q620*	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	620	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	GGAGCAATCCCAGTGCATGGT	0.393													22	53					0	0	0.016522	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907368	164907368	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:164907368G>T	uc003fej.3	-	2	1695	c.1251C>A	c.(1249-1251)AGC>AGA	p.S417R	SLITRK3_uc003fek.2_Missense_Mutation_p.S417R	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	417	LRR 7.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GAATCAGATTGCTACTCAGAT	0.403										HNSCC(40;0.11)			9	63					3.07112e-06	3.44318e-06	0.010729	1	0
ZBBX	79740	broad.mit.edu	37	3	167045833	167045833	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:167045833G>A	uc003fep.2	-	11	1082	c.759C>T	c.(757-759)TTC>TTT	p.F253F	ZBBX_uc011bpc.1_Silent_p.F253F|ZBBX_uc003feq.2_Silent_p.F224F	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	253						intracellular	zinc ion binding			ovary(2)	2						CTTCTTCATCGAATGACCCTT	0.383													40	102					0	0	0.009718	0	0
RPL22L1	200916	broad.mit.edu	37	3	170584267	170584267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:170584267G>A	uc003fhc.3	-	4	360	c.271C>T	c.(271-273)CGT>TGT	p.R91C	RPL22L1_uc003fhb.3_RNA	NM_001099645	NP_001093115	Q6P5R6	RL22L_HUMAN	ribosomal protein L22-like 1	91					translation	ribosome	structural constituent of ribosome				0	all_cancers(22;1.96e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.137)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			AGCCAATCACGAAGATTGTTC	0.348													4	5					0	0	0.009096	0	0
SPATA16	83893	broad.mit.edu	37	3	172607420	172607420	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:172607420C>T	uc003fin.3	-	11	1808	c.1650G>A	c.(1648-1650)CTG>CTA	p.L550L		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	550					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			GAGCAGTTCTCAGTTTTTTAG	0.363													24	101					0	0	0.018920	0	0
PEX5L	51555	broad.mit.edu	37	3	179533712	179533712	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr3:179533712C>T	uc003fki.1	-	10	1150	c.1020G>A	c.(1018-1020)GGG>GGA	p.G340G	PEX5L_uc011bqd.1_Silent_p.G297G|PEX5L_uc011bqe.1_Silent_p.G148G|PEX5L_uc011bqf.1_Silent_p.G232G|PEX5L_uc003fkj.1_Silent_p.G305G|PEX5L_uc010hxd.1_Silent_p.G338G|PEX5L_uc011bqg.1_Silent_p.G316G|PEX5L_uc011bqh.1_Silent_p.G281G	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	340					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			CTGGCAGATCCCCTTCCTTCA	0.488													19	66					0	0	0.007413	0	0
SLC26A1	10861	broad.mit.edu	37	4	985238	985238	+	Missense_Mutation	SNP	G	A	A	rs139918804	byFrequency	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:985238G>A	uc003gcb.2	-	3	632	c.254C>T	c.(253-255)CCG>CTG	p.P85L	SLC26A1_uc003gbx.2_Missense_Mutation_p.P85L|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Missense_Mutation_p.P85L	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	85	Helical; (Potential).					integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GATGGCCTGCGGCACCAGGAT	0.637													15	78					0	0	0.020292	0	0
TEC	7006	broad.mit.edu	37	4	48173434	48173434	+	Silent	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:48173434A>G	uc003gxz.2	-	4	367	c.276T>C	c.(274-276)TTT>TTC	p.F92F		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	92	PH.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						GACTAGGTGCAAAAATGTAAA	0.353													7	62					0	0	0.001984	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146843	70146843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:70146843G>A	uc003hej.2	+	1	627	c.625G>A	c.(625-627)GAG>AAG	p.E209K	UGT2B28_uc010ihr.2_Missense_Mutation_p.E209K	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	209					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GACTTTCATGGAGAGGGTAAA	0.368													12	55					0	0	0.013537	0	0
ANKRD17	26057	broad.mit.edu	37	4	74005457	74005457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:74005457G>A	uc003hgp.2	-	15	2993	c.2876C>T	c.(2875-2877)CCT>CTT	p.P959L	ANKRD17_uc003hgo.2_Missense_Mutation_p.P846L|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Missense_Mutation_p.P959L|ANKRD17_uc011cbd.1_Missense_Mutation_p.P524L	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	959	Gln-rich.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CAAAGCTTGAGGCATCGCCAG	0.532													16	44					0	0	0.003163	0	0
FRAS1	80144	broad.mit.edu	37	4	79460487	79460487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:79460487G>A	uc003hlb.2	+	73	11778	c.11338G>A	c.(11338-11340)GAT>AAT	p.D3780N		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3775	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTACTTCCATGATGTGCCTTT	0.418													26	84					0	0	0.018920	0	0
MTTP	4547	broad.mit.edu	37	4	100518374	100518374	+	Missense_Mutation	SNP	G	A	A	rs12933		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:100518374G>A	uc003hvc.3	+	9	1316	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	MTTP_uc011cej.1_Missense_Mutation_p.E381K	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	354	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	GGAAAATAAGGAAGTATTGTA	0.413													5	44					0	0	0.014758	0	0
TKTL2	84076	broad.mit.edu	37	4	164393413	164393413	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:164393413C>G	uc003iqp.3	-	1	1635	c.1474G>C	c.(1474-1476)GAG>CAG	p.E492Q		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	492						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGGCCAATCTCAAAATTTTCT	0.463													21	87					0	0	0.012319	0	0
TRIM60	166655	broad.mit.edu	37	4	165961379	165961379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:165961379C>T	uc003iqy.1	+	3	325	c.155C>T	c.(154-156)CCC>CTC	p.P52L	TRIM60_uc010iqx.1_Missense_Mutation_p.P52L	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	52	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		GATACCTTTCCCTGTCCTGTC	0.483													11	63					0	0	0.008291	0	0
RWDD4A	201965	broad.mit.edu	37	4	184572394	184572394	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:184572394C>A	uc003ivt.1	-	3	418	c.192G>T	c.(190-192)ATG>ATT	p.M64I	RWDD4A_uc003ivu.1_RNA|RWDD4A_uc003ivv.1_Missense_Mutation_p.M1I|RWDD4A_uc011ckl.1_Intron	NM_152682	NP_689895	Q6NW29	RWDD4_HUMAN	RWD domain containing 4A	64	RWD.										0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;7.35e-27)|Epithelial(43;1.49e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.76e-10)|GBM - Glioblastoma multiforme(59;5.54e-06)|Colorectal(24;7.92e-06)|STAD - Stomach adenocarcinoma(60;2.35e-05)|COAD - Colon adenocarcinoma(29;6.26e-05)|LUSC - Lung squamous cell carcinoma(40;0.00935)|READ - Rectum adenocarcinoma(43;0.166)		AAAAAGCGTTCATAGATAGAA	0.373													13	67					0.000422831	0.00046734	0.004007	1	0
SORBS2	8470	broad.mit.edu	37	4	186567923	186567923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:186567923G>A	uc003iyl.2	-	10	1441	c.583C>T	c.(583-585)CCT>TCT	p.P195S	SORBS2_uc003iyh.2_Missense_Mutation_p.P374S|SORBS2_uc011ckw.1_Missense_Mutation_p.P264S|SORBS2_uc003iyi.2_Missense_Mutation_p.P281S|SORBS2_uc011ckx.1_Missense_Mutation_p.P241S|SORBS2_uc003iyk.2_Missense_Mutation_p.P266S|SORBS2_uc003iym.2_Missense_Mutation_p.P295S|SORBS2_uc003iyn.1_Missense_Mutation_p.P241S|SORBS2_uc011cky.1_Missense_Mutation_p.P258S|SORBS2_uc003iyp.2_Missense_Mutation_p.P295S|SORBS2_uc011cku.1_Missense_Mutation_p.P114S|SORBS2_uc011ckv.1_Missense_Mutation_p.P99S|SORBS2_uc003iyd.2_Missense_Mutation_p.P374S|SORBS2_uc003iye.2_Missense_Mutation_p.P195S|SORBS2_uc003iya.2_Missense_Mutation_p.P195S|SORBS2_uc003iyb.2_Missense_Mutation_p.P195S|SORBS2_uc003iyc.2_Missense_Mutation_p.P180S|SORBS2_uc003iyg.2_Missense_Mutation_p.P281S|SORBS2_uc003iyf.2_Missense_Mutation_p.P258S|SORBS2_uc003iyo.1_Missense_Mutation_p.P99S	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	195						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CTGTCTGGAGGATCCCAGTCA	0.353													5	33					0	0	0.001168	0	0
FAT1	2195	broad.mit.edu	37	4	187524505	187524505	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr4:187524505G>A	uc003izf.2	-	19	11363	c.11175C>T	c.(11173-11175)ATC>ATT	p.I3725I		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3725	Extracellular (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TAACTCCAATGATTTCCTCAA	0.443										HNSCC(5;0.00058)			7	32					0	0	0.003080	0	0
SLC6A19	340024	broad.mit.edu	37	5	1219023	1219023	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:1219023G>A	uc003jbw.3	+	9	1235	c.1179G>A	c.(1177-1179)GTG>GTA	p.V393V		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	393	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TGCAGGCCGTGGAGGGCACAG	0.637													20	87					0	0	0.018920	0	0
CDH10	1008	broad.mit.edu	37	5	24488070	24488070	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:24488070A>T	uc003jgr.1	-	12	2401	c.2069T>A	c.(2068-2070)ATT>AAT	p.I690N	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	690	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTCTGGAATAATATCTCGCCG	0.473										HNSCC(23;0.051)			24	85					0	0	0.014323	0	0
UGT3A2	167127	broad.mit.edu	37	5	36064402	36064402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:36064402G>A	uc003jjz.1	-	2	238	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	UGT3A2_uc011cos.1_Intron|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	49	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTATGACCGTGATCTTGAAGA	0.413													21	38					0	0	0.014323	0	0
FYB	2533	broad.mit.edu	37	5	39201933	39201933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:39201933C>T	uc003jls.2	-	1	1197	c.1130G>A	c.(1129-1131)GGA>GAA	p.G377E	FYB_uc003jlt.2_Missense_Mutation_p.G377E|FYB_uc003jlu.2_Missense_Mutation_p.G377E|FYB_uc011cpl.1_Missense_Mutation_p.G387E	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	377	Interaction with SKAP1.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CTCACTGTTTCCAGAAGAGGT	0.433													11	29					0	0	0.013537	0	0
PTGER4	5734	broad.mit.edu	37	5	40681522	40681522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:40681522G>A	uc003jlz.2	+	2	1019	c.427G>A	c.(427-429)GTC>ATC	p.V143I		NM_000958	NP_000949	P35408	PE2R4_HUMAN	prostaglandin E receptor 4, subtype EP4	143	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|immune response	integral to membrane|plasma membrane	prostaglandin E receptor activity			lung(2)	2						GCTCTTTGCAGTCTATGCGTC	0.587											OREG0016588	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	119					0	0	0.003080	0	0
C7	730	broad.mit.edu	37	5	40934520	40934520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:40934520G>A	uc003jmh.2	+	4	346	c.232G>A	c.(232-234)GGA>AGA	p.G78R	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	78	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ACCTACAAGAGGATGTCCAAC	0.463													40	101					0	0	0.008740	0	0
C5orf28	64417	broad.mit.edu	37	5	43446465	43446465	+	Silent	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:43446465T>A	uc003jny.2	-	3	650	c.507A>T	c.(505-507)CCA>CCT	p.P169P	C5orf28_uc003jnv.3_Silent_p.P169P|C5orf28_uc003jnx.2_Silent_p.P169P	NM_022483	NP_071928	Q0VDI3	CE028_HUMAN	hypothetical protein LOC64417	169						integral to membrane					0	Lung NSC(6;2.07e-05)					TTTTTCCAAATGGGCATATCC	0.393													27	66					0	0	0.004656	0	0
NNT	23530	broad.mit.edu	37	5	43700295	43700295	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:43700295A>G	uc003joe.2	+	20	3206	c.2951A>G	c.(2950-2952)TAT>TGT	p.Y984C	NNT_uc003jof.2_Missense_Mutation_p.Y984C	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	984	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GGTGTGCCATATGACATTGTG	0.438													12	148					0	0	0.010729	0	0
MAST4	375449	broad.mit.edu	37	5	66084499	66084499	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:66084499G>A	uc003jur.3	+	3	827	c.519G>A	c.(517-519)GGG>GGA	p.G173G	MAST4_uc010iwz.2_Silent_p.G173G	NM_198828	NP_942123	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	173						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CTCCAACAGGGAGGTACCTTC	0.602													5	37					0	0	0.003080	0	0
CMYA5	202333	broad.mit.edu	37	5	79026044	79026044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:79026044G>A	uc003kgc.2	+	2	1528	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	486	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGAGAAGGAGGAAAACATGCT	0.468													15	93					0	0	0.020292	0	0
CMYA5	202333	broad.mit.edu	37	5	79030152	79030152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:79030152C>T	uc003kgc.2	+	2	5636	c.5564C>T	c.(5563-5565)TCA>TTA	p.S1855L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1855				S -> G (in Ref. 3; AAH63134).		perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAGCAGTTTTCACTTATGAGA	0.333													12	68					0	0	0.010729	0	0
ACOT12	134526	broad.mit.edu	37	5	80643716	80643716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:80643716G>A	uc003khl.3	-	6	585	c.530C>T	c.(529-531)TCC>TTC	p.S177F	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	177	Acyl coenzyme A hydrolase 2.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		GCCCCTTGTGGAAACCGCTCC	0.502													41	173					0	0	0.009718	0	0
EDIL3	10085	broad.mit.edu	37	5	83356194	83356194	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:83356194C>T	uc003kio.1	-	9	1481	c.1062G>A	c.(1060-1062)AGG>AGA	p.R354R	EDIL3_uc003kip.1_Silent_p.R344R|EDIL3_uc011ctt.1_Silent_p.R131R	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	354	F5/8 type C 2.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GCCGAGCTTTCCTTGGTTCCC	0.468													15	61					0	0	0.020292	0	0
GPR98	84059	broad.mit.edu	37	5	90136683	90136683	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:90136683C>T	uc003kju.2	+	78	16996	c.16900C>T	c.(16900-16902)CAG>TAG	p.Q5634*	GPR98_uc003kjt.2_Nonsense_Mutation_p.Q3340*|GPR98_uc003kjw.2_Nonsense_Mutation_p.Q1295*	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5634	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCTTGCAGATCAGCTACATCA	0.468													14	43					0	0	0.016723	0	0
ZNF474	133923	broad.mit.edu	37	5	121487946	121487946	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:121487946C>T	uc003ksv.2	+	2	637	c.261C>T	c.(259-261)ATC>ATT	p.I87I		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	87						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		CCCCTGTGATCCCGGCCCGCA	0.498													14	116					0	0	0.003163	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759071	121759071	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:121759071G>A	uc003ksw.1	+	4	845	c.639G>A	c.(637-639)GTG>GTA	p.V213V	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Silent_p.V213V|SNCAIP_uc003ksx.1_Silent_p.V260V|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Silent_p.V213V	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	213					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TTTCTCCCGTGAAAAGCCCTC	0.483													13	82					0	0	0.013537	0	0
MATR3	9782	broad.mit.edu	37	5	138643900	138643900	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:138643900T>C	uc003ldu.2	+	5	1223	c.796T>C	c.(796-798)TTT>CTT	p.F266L	MATR3_uc003lds.2_Missense_Mutation_p.F266L|MATR3_uc010jfb.2_Missense_Mutation_p.F266L|MATR3_uc003ldt.2_Intron|MATR3_uc003ldw.2_Missense_Mutation_p.F266L|MATR3_uc003ldx.2_Missense_Mutation_p.F266L|MATR3_uc010jfc.2_Missense_Mutation_p.F266L|MATR3_uc003ldy.2_Intron|MATR3_uc011czb.1_Intron|MATR3_uc003ldz.2_Missense_Mutation_p.F266L|MATR3_uc003lea.2_Missense_Mutation_p.F266L	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	266						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GAGATCTCTCTTTGAGAAAAA	0.438													10	68					0	0	0.006214	0	0
HARS	3035	broad.mit.edu	37	5	140056349	140056349	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:140056349G>C	uc003lgv.2	-	10	1166	c.1084C>G	c.(1084-1086)CGC>GGC	p.R362G	HARS_uc003lgu.2_Missense_Mutation_p.R293G|HARS_uc011czm.1_Missense_Mutation_p.R322G|HARS_uc003lgw.2_Missense_Mutation_p.R342G|HARS_uc011czn.1_Missense_Mutation_p.R302G|HARS_uc010jfu.2_Missense_Mutation_p.R362G|HARS_uc011czo.1_Missense_Mutation_p.R288G|HARS_uc011czp.1_Missense_Mutation_p.R248G|HARS_uc011czq.1_Missense_Mutation_p.R252G	NM_002109	NP_002100	P12081	SYHC_HUMAN	histidyl-tRNA synthetase	362					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	CCATCATAGCGTCCTCCAGCA	0.602													28	66					0	0	0.005443	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230085	140230085	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:140230085C>T	uc003lhu.2	+	1	2729	c.2005C>T	c.(2005-2007)CTG>TTG	p.L669L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.L669L	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	669	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGGTGTCGCTGGTGGAGAG	0.672													13	46					0	0	0.013537	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348394	140348394	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:140348394G>A	uc003lii.2	+	1	2283	c.2043G>A	c.(2041-2043)GTG>GTA	p.V681V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.V681V	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	681	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGCTGTGGTGGATAGGGTTT	0.473													12	65					0	0	0.010729	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502262	140502262	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:140502262C>T	uc003lip.1	+	1	682	c.682C>T	c.(682-684)CGA>TGA	p.R228*		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	228	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTCATGGTTCGAATCCTGAT	0.542													18	72					0	0	0.007413	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553131	140553131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:140553131G>A	uc003lit.2	+	1	889	c.715G>A	c.(715-717)GCC>ACC	p.A239T		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	239	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATGACAACGCCCCTGATTT	0.547													7	41					0	0	0.001984	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615785	140615785	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:140615785C>T	uc003ljc.1	+	1	1848	c.1500C>T	c.(1498-1500)GAC>GAT	p.D500D		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						TGGTGCTGGACGCCAACGACA	0.706													6	47					0	0	0.003080	0	0
TCOF1	6949	broad.mit.edu	37	5	149767574	149767574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:149767574C>T	uc003lry.2	+	18	3077	c.2969C>T	c.(2968-2970)TCG>TTG	p.S990L	TCOF1_uc011dch.1_Missense_Mutation_p.S990L|TCOF1_uc003lrz.2_Missense_Mutation_p.S990L|TCOF1_uc003lrx.2_Missense_Mutation_p.S913L|TCOF1_uc003lsa.2_Missense_Mutation_p.S913L|TCOF1_uc011dci.1_Missense_Mutation_p.S419L	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	990					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCCGAGCCTCGGAGAGCACA	0.627													9	63					0	0	0.004482	0	0
KIF4B	285643	broad.mit.edu	37	5	154396513	154396513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:154396513G>A	uc010jih.1	+	1	3254	c.3094G>A	c.(3094-3096)GAA>AAA	p.E1032K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	1032	Interaction with PRC1 (By similarity).|Globular (By similarity).				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TCGTGTTAAAGAAAAGTTTCT	0.348													8	88					0	0	0.004482	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482405	156482405	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:156482405G>A	uc010jij.1	-	3	371	c.186C>T	c.(184-186)GTC>GTT	p.V62V	HAVCR1_uc011ddl.1_5'Flank|HAVCR1_uc003lwi.2_Silent_p.V62V|HAVCR1_uc011ddm.1_Silent_p.V62V	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	62	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CATTGGTCCAGACAATGCCAT	0.478													93	743					0	0	0.014410	0	0
ATP10B	23120	broad.mit.edu	37	5	160113159	160113159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:160113159C>T	uc003lym.1	-	6	1244	c.397G>A	c.(397-399)GAT>AAT	p.D133N	ATP10B_uc003lyp.2_Missense_Mutation_p.D133N|ATP10B_uc011deg.1_Missense_Mutation_p.D177N|ATP10B_uc003lyo.2_5'Flank	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	133	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCATGCCATCCTTGATCATG	0.433													8	47					0	0	0.004482	0	0
GABRA6	2559	broad.mit.edu	37	5	161116304	161116304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:161116304C>T	uc003lyu.2	+	5	829	c.491C>T	c.(490-492)CCT>CTT	p.P164L	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	164	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GTTAACTTTCCTATGGATGGG	0.388										TCGA Ovarian(5;0.080)			44	69					0	0	0.014410	0	0
HK3	3101	broad.mit.edu	37	5	176316509	176316509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:176316509C>T	uc003mfa.2	-	8	879	c.787G>A	c.(787-789)GAA>AAA	p.E263K	HK3_uc003mez.2_5'UTR	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	263	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCCGGTCTTCGTCCAGCACT	0.642													5	46					0	0	0.014758	0	0
NSD1	64324	broad.mit.edu	37	5	176721287	176721287	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr5:176721287C>T	uc003mfr.3	+	23	7056	c.6918C>T	c.(6916-6918)TCC>TCT	p.S2306S	NSD1_uc003mft.3_Silent_p.S2037S|NSD1_uc011dfx.1_Silent_p.S1954S	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2306	Pro-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GGACCAAATCCCAATCCTTGG	0.572			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			26	53					0	0	0.021523	0	0
GFOD1	54438	broad.mit.edu	37	6	13365840	13365840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:13365840C>T	uc003nat.1	-	2	973	c.308G>A	c.(307-309)CGC>CAC	p.R103H	GFOD1_uc003nas.1_5'UTR	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	103						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			CGAGGTCATGCGGAAAGCGTC	0.647													29	100					0	0	0.013726	0	0
TRIM39	56658	broad.mit.edu	37	6	30297489	30297489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:30297489C>T	uc010jrz.2	+	3	707	c.395C>T	c.(394-396)TCC>TTC	p.S132F	HCG18_uc003npx.2_5'Flank|HCG18_uc003npy.2_5'Flank|TRIM39_uc003npz.2_Missense_Mutation_p.S132F|TRIM39_uc003nqb.2_Missense_Mutation_p.S132F|TRIM39_uc003nqc.2_Missense_Mutation_p.S132F|TRIM39_uc010jsa.1_Missense_Mutation_p.S132F	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	132	B box-type.				apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						TGTGCAATTTCCCACACCCAC	0.557													15	57					0	0	0.004990	0	0
DDR1	780	broad.mit.edu	37	6	30865345	30865345	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:30865345C>T	uc003nrr.2	+	16	2446	c.2187C>T	c.(2185-2187)GAC>GAT	p.D729D	DDR1_uc010jse.2_Silent_p.D692D|DDR1_uc003nrq.2_Silent_p.D692D|DDR1_uc003nrs.2_Silent_p.D729D|DDR1_uc003nrt.2_Silent_p.D692D|DDR1_uc011dms.1_Silent_p.D710D|DDR1_uc003nru.2_Silent_p.D692D|DDR1_uc003nrv.2_Silent_p.D735D|DDR1_uc003nrw.1_Silent_p.D464D|DDR1_uc003nrz.1_Silent_p.D54D	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	729	Cytoplasmic (Potential).|Protein kinase.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCCCTGGGGACGGGCAGGCTG	0.642													9	34					0	0	0.004482	0	0
C4A	720	broad.mit.edu	37	6	31994894	31994894	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:31994894C>T	uc011dpd.1	+	20	2638	c.2587C>T	c.(2587-2589)CTG>TTG	p.L863L	C4A_uc011dpe.1_Silent_p.L863L	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	863					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						GGATAAAAACCTGACTGTGAG	0.632													8	102					0	0	0.008291	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32975973	32975973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:32975973G>A	uc003ocr.2	-	2	224	c.148C>T	c.(148-150)CAT>TAT	p.H50Y	HLA-DOA_uc010juj.2_Missense_Mutation_p.H20Y|HLA-DOA_uc010jui.2_Missense_Mutation_p.H50Y	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	50	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						TCAAATTCATGGGTGAACTGG	0.567													13	22					0	0	0.016723	0	0
TREML1	340205	broad.mit.edu	37	6	41122009	41122009	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:41122009G>A	uc011duc.1	-	1	62	c.18C>T	c.(16-18)CTC>CTT	p.L6L	TREML1_uc003opx.2_Silent_p.L6L|TREML1_uc011dud.1_Silent_p.L6L	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	6			L -> V (in a breast cancer sample; somatic mutation).		calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity	p.L6V(1)		breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCAGCAGCAAGAGCAGGGTGA	0.577													7	23					0	0	0.001984	0	0
FRS3	10817	broad.mit.edu	37	6	41738677	41738677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:41738677G>A	uc003orc.1	-	7	1403	c.1159C>T	c.(1159-1161)CCT>TCT	p.P387S		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	387					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			AGTGGCACAGGAAAGCTGCCG	0.657													10	91					0	0	0.006214	0	0
TRERF1	55809	broad.mit.edu	37	6	42227365	42227365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:42227365G>A	uc003osd.2	-	9	2544	c.1981C>T	c.(1981-1983)CTC>TTC	p.L661F	TRERF1_uc011duq.1_Missense_Mutation_p.L578F|TRERF1_uc003osb.2_Missense_Mutation_p.L417F|TRERF1_uc003osc.2_Missense_Mutation_p.L417F|TRERF1_uc003ose.2_Missense_Mutation_p.L681F	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	661	Pro-rich.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GGGATGAAGAGAGGTTCCGGC	0.657													17	58					0	0	0.007413	0	0
RIMS1	22999	broad.mit.edu	37	6	73102446	73102446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:73102446G>A	uc003pga.2	+	31	4629	c.4552G>A	c.(4552-4554)GAT>AAT	p.D1518N	RIMS1_uc011dyb.1_Missense_Mutation_p.D915N|RIMS1_uc003pgc.2_Missense_Mutation_p.D967N|RIMS1_uc010kaq.2_Missense_Mutation_p.D838N|RIMS1_uc011dyc.1_Missense_Mutation_p.D643N|RIMS1_uc010kar.2_Missense_Mutation_p.D586N|RIMS1_uc011dyd.1_Missense_Mutation_p.D652N|RIMS1_uc003pgf.2_Missense_Mutation_p.D518N|RIMS1_uc003pgg.2_Missense_Mutation_p.D414N|RIMS1_uc003pgi.2_Missense_Mutation_p.D334N|RIMS1_uc003pgh.2_Missense_Mutation_p.D385N|RIMS1_uc003pgd.2_Missense_Mutation_p.D584N|RIMS1_uc003pge.2_Missense_Mutation_p.D558N|RIMS1_uc011dye.1_Missense_Mutation_p.D324N|RIMS1_uc011dyf.1_Missense_Mutation_p.D142N|RIMS1_uc011dyg.1_Missense_Mutation_p.D45N	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1518					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TCAATTCAGTGATTTTCTTGA	0.408													26	45					0	0	0.006320	0	0
HTR1B	3351	broad.mit.edu	37	6	78172162	78172162	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:78172162A>G	uc003pil.1	-	1	959	c.959T>C	c.(958-960)TTG>TCG	p.L320S		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	320	Helical; Name=6; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	AAAGGCTCCCAAAATGATCCC	0.512													14	107					0	0	0.004007	0	0
MCHR2	84539	broad.mit.edu	37	6	100382375	100382375	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:100382375C>T	uc003pqh.1	-	5	921	c.606G>A	c.(604-606)ACG>ACA	p.T202T	MCHR2_uc003pqi.1_Silent_p.T202T	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	202	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		AAGTTGTTATCGTCAAATAAA	0.274													8	37					0	0	0.006214	0	0
AKD1	221264	broad.mit.edu	37	6	109854549	109854549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:109854549G>A	uc003ptn.2	-	28	3552	c.3475C>T	c.(3475-3477)CGC>TGC	p.R1159C	AKD1_uc011eat.1_Missense_Mutation_p.R238C	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1159					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						GGAAGGAGGCGATCAAAAATA	0.383													16	24					0	0	0.004007	0	0
DSE	29940	broad.mit.edu	37	6	116757311	116757311	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:116757311C>T	uc003pws.2	+	6	1874	c.1680C>T	c.(1678-1680)CTC>CTT	p.L560L	DSE_uc011ebg.1_Silent_p.L579L|DSE_uc003pwt.2_Silent_p.L560L|DSE_uc003pwu.2_Silent_p.L227L	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	560					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		ATCTCATCCTCCTACATCCAC	0.498													15	17					0	0	0.003163	0	0
LAMA2	3908	broad.mit.edu	37	6	129777485	129777485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:129777485G>A	uc003qbn.2	+	47	6818	c.6713G>A	c.(6712-6714)GGG>GAG	p.G2238E	LAMA2_uc003qbo.2_Missense_Mutation_p.G2238E	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2238	Laminin G-like 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGAAGAACTGGGAGAAATGGA	0.433													24	40					0	0	0.021523	0	0
LPAL2	80350	broad.mit.edu	37	6	160888021	160888021	+	RNA	SNP	G	T	T	rs62441868	by1000genomes	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:160888021G>T	uc003qtj.2	-	10		c.1534C>A				NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		TCTTGCCCCGGTATCCTTTCC	0.458													4	33					0.000602214	0.000662921	0.014758	1	0
WDR27	253769	broad.mit.edu	37	6	170070706	170070706	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr6:170070706C>A	uc003qwx.2	-	4	935	c.415G>T	c.(415-417)GCC>TCC	p.A139S	WDR27_uc010kkw.1_Missense_Mutation_p.A139S|WDR27_uc003qwy.2_Intron|WDR27_uc011egw.1_RNA|WDR27_uc010kkx.2_3'UTR			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	139										pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		GCACACACGGCAACAACATGA	0.493													22	41					1.2644e-06	1.42933e-06	0.010504	1	0
RSPH10B2	728194	broad.mit.edu	37	7	6797551	6797551	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:6797551C>T	uc003sqw.1	+	3	514	c.243C>T	c.(241-243)CTC>CTT	p.L81L	RSPH10B2_uc010ktk.1_Silent_p.L81L	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	81										ovary(1)|pancreas(1)|skin(1)	3						TGACCAAACTCATAGTGGAAA	0.388													41	245					0	0	0.014410	0	0
DNAH11	8701	broad.mit.edu	37	7	21742349	21742349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:21742349C>T	uc003svc.2	+	38	6254	c.6223C>T	c.(6223-6225)CGT>TGT	p.R2075C		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2075	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTGGGGACTTCGTGCTATTAA	0.383									Kartagener_syndrome				9	35					0	0	0.008291	0	0
CDC14C	168448	broad.mit.edu	37	7	48965076	48965076	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:48965076C>T	uc010kyv.1	+	1	920	c.808C>T	c.(808-810)CTG>TTG	p.L270L		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						CAAAAGATTTCTGGATATCTG	0.468													6	22					0	0	0.001984	0	0
DDC	1644	broad.mit.edu	37	7	50530955	50530955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:50530955C>T	uc003tpf.3	-	14	1503	c.1417G>A	c.(1417-1419)GAC>AAC	p.D473N	DDC_uc010kza.2_Missense_Mutation_p.D388N|DDC_uc003tpg.3_Missense_Mutation_p.D473N	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	473					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CGCAGCACGTCGGCCGCCAGC	0.602													9	33					0	0	0.006214	0	0
ASL	435	broad.mit.edu	37	7	65553885	65553885	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:65553885C>T	uc003tuo.2	+	11	921	c.810C>T	c.(808-810)TTC>TTT	p.F270F	ASL_uc003tup.2_Silent_p.F270F|ASL_uc003tur.2_Silent_p.F244F|ASL_uc003tuq.2_Silent_p.F270F	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	270					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	AATTCAGCTTCGTGCAGCTCT	0.617													5	48					0	0	0.014758	0	0
ELN	2006	broad.mit.edu	37	7	73462834	73462834	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:73462834G>A	uc003tzw.2	+	15	838	c.747G>A	c.(745-747)GGG>GGA	p.G249G	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_Intron|ELN_uc011kfe.1_Silent_p.G218G|ELN_uc003tzn.2_Silent_p.G249G|ELN_uc003tzz.2_Silent_p.G213G|ELN_uc003tzo.2_Silent_p.G235G|ELN_uc003tzp.2_Silent_p.G205G|ELN_uc003tzq.2_Silent_p.G132G|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.G249G|ELN_uc003tzt.2_Silent_p.G254G|ELN_uc003tzu.2_Silent_p.G254G|ELN_uc003tzv.2_Silent_p.G239G|ELN_uc003tzx.2_Silent_p.G239G|ELN_uc011kff.1_Silent_p.G249G|ELN_uc003tzy.2_Silent_p.G244G	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	249	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TTCCCCCAGGGGTTGGCCCCC	0.517			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						26	139					0	0	0.018920	0	0
PCLO	27445	broad.mit.edu	37	7	82545543	82545543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:82545543G>A	uc003uhx.2	-	7	12048	c.11759C>T	c.(11758-11760)TCA>TTA	p.S3920L	PCLO_uc003uhv.2_Missense_Mutation_p.S3920L|PCLO_uc010lec.2_Missense_Mutation_p.S885L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3851	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGATAAGGTGAAACTTGCTG	0.463													104	409					0	0	0.014410	0	0
TRRAP	8295	broad.mit.edu	37	7	98529133	98529133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:98529133G>A	uc003upp.2	+	26	3906	c.3697G>A	c.(3697-3699)GCC>ACC	p.A1233T	TRRAP_uc011kis.1_Missense_Mutation_p.A1233T|TRRAP_uc003upr.2_Missense_Mutation_p.A925T	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1233					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GATCGTGGCCGCCCAGGAAAA	0.557													5	28					0	0	0.001168	0	0
PILRA	29992	broad.mit.edu	37	7	99971782	99971782	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:99971782G>T	uc003uuo.1	+	2	392	c.180G>T	c.(178-180)GAG>GAT	p.E60D	PILRA_uc011kjn.1_Missense_Mutation_p.E60D|PILRA_uc011kjo.1_Missense_Mutation_p.E60D|PILRA_uc003uup.1_Missense_Mutation_p.E60D|PILRA_uc003uuq.1_Missense_Mutation_p.E60D	NM_013439	NP_038467	Q9UKJ1	PILRA_HUMAN	paired immunoglobulin-like type 2 receptor alpha	60	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	extracellular region|integral to membrane|plasma membrane	protein binding|receptor activity			skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ACCCCTGGGAGTTAGCCACAG	0.542													20	88					2.89027e-11	3.3505e-11	0.014323	1	0
ACTL6B	51412	broad.mit.edu	37	7	100244379	100244379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:100244379G>A	uc003uvy.2	-	11	1119	c.1012C>T	c.(1012-1014)CGC>TGC	p.R338C	ACTL6B_uc003uvx.1_Missense_Mutation_p.R129C|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	338					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTCACCGGGCGAATATCAATG	0.667													22	20					0	0	0.010504	0	0
EPHB4	2050	broad.mit.edu	37	7	100420204	100420204	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:100420204A>T	uc003uwn.1	-	4	988	c.497T>A	c.(496-498)CTG>CAG	p.L166Q	EPHB4_uc003uwm.1_Missense_Mutation_p.L73Q|EPHB4_uc010lhj.1_Missense_Mutation_p.L166Q|EPHB4_uc011kkf.1_Missense_Mutation_p.L166Q|EPHB4_uc011kkg.1_Missense_Mutation_p.L166Q|EPHB4_uc011kkh.1_Missense_Mutation_p.L166Q	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	166	Extracellular (Potential).				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					GAGCGGTCCCAGACGCAGCGT	0.672													27	41					0	0	0.005443	0	0
CUX1	1523	broad.mit.edu	37	7	101882853	101882853	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:101882853C>T	uc003uyx.3	+	23	3914	c.3876C>T	c.(3874-3876)TTC>TTT	p.F1292F	CUX1_uc003uys.3_Silent_p.F1303F|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1292	Homeobox.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCAACTGGTTCCACAACTACA	0.607													29	42					0	0	0.007291	0	0
IQUB	154865	broad.mit.edu	37	7	123152202	123152202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:123152202C>T	uc003vkn.2	-	2	770	c.193G>A	c.(193-195)GAC>AAC	p.D65N	IQUB_uc003vko.2_Missense_Mutation_p.D65N|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.D65N|IQUB_uc003vkq.2_Missense_Mutation_p.D65N	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	65										ovary(3)|large_intestine(1)	4						AAGCTTTGGTCACTCTGCTCC	0.423													15	151					0	0	0.020292	0	0
GPR37	2861	broad.mit.edu	37	7	124404608	124404608	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:124404608G>A	uc003vli.2	-	1	1074	c.423C>T	c.(421-423)GCC>GCT	p.A141A		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	141	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						AGAGCTGGAGGGCCGTGGGGT	0.637													39	169					0	0	0.008740	0	0
AKR1B1	231	broad.mit.edu	37	7	134134532	134134532	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:134134532G>A	uc003vrp.1	-	4	443	c.369C>T	c.(367-369)TTC>TTT	p.F123F	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	123					C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	CATCCAATGGGAAAAATTCCT	0.468													67	112					0	0	0.014410	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				38	46					0	0	0.005524	0	0
TRYX3	136541	broad.mit.edu	37	7	141952147	141952147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:141952147C>T	uc003vxb.2	-	5	940	c.620G>A	c.(619-621)GGA>GAA	p.G207E	TRYX3_uc003vxc.3_Missense_Mutation_p.G207E	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	207	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AGACAGGATTCCTTGAAGCAT	0.398													12	50					0	0	0.016723	0	0
OR2F1	26211	broad.mit.edu	37	7	143657492	143657492	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:143657492G>A	uc003wds.1	+	1	473	c.429G>A	c.(427-429)AGG>AGA	p.R143R		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					TGTGTGCTAGGTTGGCCATCA	0.527													18	93					0	0	0.007413	0	0
OR2A5	393046	broad.mit.edu	37	7	143747706	143747706	+	Missense_Mutation	SNP	C	T	T	rs149614119	by1000genomes	TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:143747706C>T	uc011ktw.1	+	1	212	c.212C>T	c.(211-213)TCG>TTG	p.S71L		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ATTGATATTTCGTATGCTTCC	0.483													31	61					0	0	0.009535	0	0
TPK1	27010	broad.mit.edu	37	7	144288629	144288629	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:144288629C>A	uc003weq.2	-	7	491	c.388G>T	c.(388-390)GGG>TGG	p.G130W	TPK1_uc003weo.2_Intron|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Intron|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	130					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	TCAAAACGCCCAGCAAGGCCT	0.408													10	84					0.000151284	0.000167889	0.016723	1	0
GIMAP6	474344	broad.mit.edu	37	7	150327185	150327185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:150327185C>T	uc003whn.2	-	2	470	c.46G>A	c.(46-48)GAA>AAA	p.E16K	GIMAP6_uc003whm.2_Silent_p.Q10Q	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	16							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GACAGCTCTTCTGGGGGATTC	0.438													47	161					0	0	0.014410	0	0
TMUB1	83590	broad.mit.edu	37	7	150778904	150778904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:150778904C>T	uc003wjb.2	-	2	588	c.473G>A	c.(472-474)AGC>AAC	p.S158N	FASTK_uc003wiw.1_5'Flank|FASTK_uc003wix.1_5'Flank|FASTK_uc003wiy.1_5'Flank|FASTK_uc003wiz.1_5'Flank|FASTK_uc003wja.1_5'Flank|TMUB1_uc003wjc.2_Missense_Mutation_p.S158N|TMUB1_uc003wjd.2_Missense_Mutation_p.S158N	NM_031434	NP_113622	Q9BVT8	TMUB1_HUMAN	transmembrane and ubiquitin-like domain	158	Ubiquitin-like.					cytoplasm|integral to membrane|nucleus					0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGTGAAGGCTGCCCAGGGT	0.682													12	39					0	0	0.013537	0	0
TMUB1	83590	broad.mit.edu	37	7	150779298	150779298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr7:150779298C>T	uc003wjb.2	-	1	468	c.353G>A	c.(352-354)AGG>AAG	p.R118K	FASTK_uc003wiw.1_5'Flank|FASTK_uc003wix.1_5'Flank|FASTK_uc003wiy.1_5'Flank|FASTK_uc003wiz.1_5'Flank|FASTK_uc003wja.1_5'Flank|TMUB1_uc003wjc.2_Missense_Mutation_p.R118K|TMUB1_uc003wjd.2_Missense_Mutation_p.R118K	NM_031434	NP_113622	Q9BVT8	TMUB1_HUMAN	transmembrane and ubiquitin-like domain	118	Ubiquitin-like.					cytoplasm|integral to membrane|nucleus					0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGCCAGGCCCTGGCCACCTG	0.607													34	331					0	0	0.013726	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163401	163401	+	RNA	SNP	G	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:163401G>C	uc010lra.2	-	4		c.732C>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TCTGGTGCTTGTTGGCTTTAA	0.463													3	25					0	0	0.004672	0	0
CSMD1	64478	broad.mit.edu	37	8	3045433	3045433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:3045433C>T	uc011kwk.1	-	36	5971	c.5581G>A	c.(5581-5583)GAT>AAT	p.D1861N	CSMD1_uc011kwj.1_Missense_Mutation_p.D1253N|CSMD1_uc003wqe.2_Missense_Mutation_p.D1017N|CSMD1_uc010lrg.2_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1861	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCCCCACCATCGTGGATCTCA	0.448													4	26					0	0	0.001168	0	0
CSMD1	64478	broad.mit.edu	37	8	3076776	3076776	+	Splice_Site	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:3076776C>A	uc011kwk.1	-	29	5065	c.4675_splice	c.e29+1	p.E1559_splice	CSMD1_uc011kwj.1_Splice_Site_p.E951_splice|CSMD1_uc003wqe.2_Splice_Site_p.E715_splice	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor							integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AATCGCAATACCTTTAAATTC	0.423													3	7					2.56e-06	2.87605e-06	0.009096	1	0
CSMD1	64478	broad.mit.edu	37	8	3889468	3889468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:3889468C>T	uc011kwk.1	-	4	959	c.569G>A	c.(568-570)GGA>GAA	p.G190E		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	190	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCACCATTTCCTGGGCTGAC	0.557													10	27					0	0	0.008291	0	0
EPHX2	2053	broad.mit.edu	37	8	27361194	27361194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:27361194C>T	uc003xfu.2	+	3	341	c.260C>T	c.(259-261)TCC>TTC	p.S87F	EPHX2_uc010lut.1_Missense_Mutation_p.S87F|EPHX2_uc010luu.2_Missense_Mutation_p.S87F|EPHX2_uc010luv.2_Missense_Mutation_p.S21F|EPHX2_uc003xfv.2_Missense_Mutation_p.S34F|EPHX2_uc010luw.2_Missense_Mutation_p.S21F|EPHX2_uc011lam.1_5'Flank	NM_001979	NP_001970	P34913	HYES_HUMAN	epoxide hydrolase 2, cytoplasmic	87	Phosphatase.				aromatic compound catabolic process|cellular calcium ion homeostasis|drug metabolic process|inflammatory response|positive regulation of vasodilation|reactive oxygen species metabolic process|regulation of blood pressure|response to toxin|xenobiotic metabolic process	cytosol|focal adhesion|Golgi apparatus|nucleolus|peroxisome|soluble fraction	epoxide hydrolase activity|metal ion binding|protein homodimerization activity			ovary(1)	1		Ovarian(32;2.61e-05)|all_epithelial(46;0.207)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0226)|Epithelial(17;1.12e-09)|Colorectal(74;0.157)	Tamoxifen(DB00675)	AAGAATTTCTCCATAAAAGAA	0.473													6	25					0	0	0.001168	0	0
NRG1	3084	broad.mit.edu	37	8	32453471	32453471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:32453471G>A	uc003xiv.2	+	2	743	c.226G>A	c.(226-228)GAA>AAA	p.E76K	NRG1_uc003xip.2_Missense_Mutation_p.E291K|NRG1_uc003xir.2_Missense_Mutation_p.E76K|NRG1_uc010lvl.2_Missense_Mutation_p.E76K|NRG1_uc010lvm.2_Missense_Mutation_p.E76K|NRG1_uc010lvn.2_Missense_Mutation_p.E76K|NRG1_uc003xis.2_Missense_Mutation_p.E76K|NRG1_uc011lbf.1_Missense_Mutation_p.E76K|NRG1_uc010lvo.2_Missense_Mutation_p.E76K|NRG1_uc003xiu.2_Missense_Mutation_p.E76K|NRG1_uc003xiw.2_Missense_Mutation_p.E76K|NRG1_uc003xit.2_Missense_Mutation_p.E76K|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_5'UTR|NRG1_uc010lvp.2_Missense_Mutation_p.E42K|NRG1_uc010lvq.2_Missense_Mutation_p.E42K	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	76	Extracellular (Potential).|Ig-like C2-type.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		GAATGGGAATGAATTGAATCG	0.393													12	86					0	0	0.020292	0	0
CHRNA6	8973	broad.mit.edu	37	8	42611890	42611890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:42611890G>A	uc003xpj.2	-	5	498	c.452C>T	c.(451-453)CCA>CTA	p.P151L	CHRNA6_uc011lcw.1_Missense_Mutation_p.P136L	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	151	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AAAAATAGCTGGTGGAGTCCA	0.408													23	81					0	0	0.014323	0	0
PXDNL	137902	broad.mit.edu	37	8	52320664	52320664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:52320664C>T	uc003xqu.3	-	17	3621	c.3520G>A	c.(3520-3522)GAA>AAA	p.E1174K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1174					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TCTTTAATTTCATTTTGAAGA	0.358													15	58					0	0	0.020292	0	0
RP1	6101	broad.mit.edu	37	8	55540148	55540148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:55540148G>A	uc003xsd.1	+	4	3854	c.3706G>A	c.(3706-3708)GAT>AAT	p.D1236N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1236					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTCCTCTTTGGATGGAGGTTG	0.443													60	92					0	0	0.014410	0	0
RP1	6101	broad.mit.edu	37	8	55541975	55541975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:55541975G>A	uc003xsd.1	+	4	5681	c.5533G>A	c.(5533-5535)GAA>AAA	p.E1845K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1845					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTGTGCCAAGGAAAGAATAGC	0.403													16	26					0	0	0.004007	0	0
CPA6	57094	broad.mit.edu	37	8	68430207	68430207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:68430207C>T	uc003xxq.3	-	3	524	c.268G>A	c.(268-270)GGT>AGT	p.G90S	CPA6_uc003xxr.3_Intron|CPA6_uc003xxs.2_Missense_Mutation_p.G90S	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	90					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			GCTCGGGAACCATTTTGGGGG	0.448													33	56					0	0	0.012213	0	0
C8orf34	116328	broad.mit.edu	37	8	69552674	69552674	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:69552674A>G	uc010lyz.2	+	8	960	c.911A>G	c.(910-912)AAC>AGC	p.N304S	C8orf34_uc003xyb.2_Missense_Mutation_p.N279S	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	304					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			AGCAAATTTAACCAAGGCCGT	0.403													18	55					0	0	0.007413	0	0
DPYS	1807	broad.mit.edu	37	8	105459571	105459571	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:105459571T>A	uc003yly.3	-	3	713	c.584A>T	c.(583-585)AAT>ATT	p.N195I		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	195					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TAAGTCTCCATTTTCCGCATG	0.458													11	48					0	0	0.013537	0	0
CSMD3	114788	broad.mit.edu	37	8	113933874	113933874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:113933874G>A	uc003ynu.2	-	10	1774	c.1615C>T	c.(1615-1617)CAC>TAC	p.H539Y	CSMD3_uc003ynt.2_Missense_Mutation_p.H499Y|CSMD3_uc011lhx.1_Missense_Mutation_p.H435Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	539	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACAGGCCTGTGATCACTCCAA	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	57					0	0	0.008291	0	0
EXT1	2131	broad.mit.edu	37	8	119122644	119122644	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:119122644C>T	uc003yok.1	-	1	1415	c.642G>A	c.(640-642)GCG>GCA	p.A214A		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	214	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			TGGCCAGCATCGCCTGGCCGA	0.473			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				49	122					0	0	0.014410	0	0
FAM135B	51059	broad.mit.edu	37	8	139158223	139158223	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:139158223G>A	uc003yuy.2	-	15	3690	c.3519C>T	c.(3517-3519)TTC>TTT	p.F1173F	FAM135B_uc003yux.2_Silent_p.F1074F|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.F735F|FAM135B_uc003yvb.2_Missense_Mutation_p.P701S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1173										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CAGACATTAGGAAGTCCAGTT	0.438										HNSCC(54;0.14)			27	77					0	0	0.008361	0	0
PYCRL	65263	broad.mit.edu	37	8	144687915	144687915	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:144687915G>A	uc003yyy.2	-	6	826	c.816C>T	c.(814-816)GCC>GCT	p.A272A	PYCRL_uc011lkm.1_Silent_p.A252A|PYCRL_uc011lkn.1_RNA	NM_023078	NP_075566	Q53H96	P5CR3_HUMAN	pyrroline-5-carboxylate reductase-like	260					proline biosynthetic process		pyrroline-5-carboxylate reductase activity				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			CAGCCTCCACGGCGCTCATGG	0.682													7	55					0	0	0.004482	0	0
FOXH1	8928	broad.mit.edu	37	8	145700630	145700630	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:145700630G>A	uc003zdc.2	-	2	768	c.189C>T	c.(187-189)GTC>GTT	p.V63V		NM_003923	NP_003914	O75593	FOXH1_HUMAN	forkhead box H1	63	Fork-head.				axial mesoderm development|blood vessel development|cell migration involved in gastrulation|embryonic heart tube anterior/posterior pattern formation|floor plate formation|heart looping|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|specification of organ position|transforming growth factor beta receptor signaling pathway	activin responsive factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|R-SMAD binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.76e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			ACACGGCCTGGACCTGACGGA	0.662													10	24					0	0	0.013537	0	0
ZNF34	80778	broad.mit.edu	37	8	145999265	145999265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr8:145999265G>A	uc003zdy.3	-	6	1171	c.1069C>T	c.(1069-1071)CAC>TAC	p.H357Y	ZNF34_uc010mgb.2_Missense_Mutation_p.H254Y|ZNF34_uc003zdx.3_Missense_Mutation_p.H336Y	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	357	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		TCTCCGGTGTGGATTCTCTGG	0.512													6	40					0	0	0.004482	0	0
NTRK2	4915	broad.mit.edu	37	9	87563410	87563410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:87563410G>A	uc004aoa.1	+	17	2688	c.1750G>A	c.(1750-1752)GAC>AAC	p.D584N	NTRK2_uc004any.1_Missense_Mutation_p.D584N|NTRK2_uc004anz.1_Missense_Mutation_p.D600N	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	584	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TGCACGCAAGGACTTCCACCG	0.537										TSP Lung(25;0.17)			6	18					0	0	0.003080	0	0
SPTLC1	10558	broad.mit.edu	37	9	94842318	94842318	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:94842318C>A	uc004arl.1	-	5	445	c.407G>T	c.(406-408)AGA>ATA	p.R136I	SPTLC1_uc011ltv.1_Missense_Mutation_p.R136I|SPTLC1_uc004arm.1_Missense_Mutation_p.R136I|SPTLC1_uc004arn.1_Missense_Mutation_p.R136I	NM_006415	NP_006406	O15269	SPTC1_HUMAN	serine palmitoyltransferase subunit 1 isoform a	136	Cytoplasmic (Potential).					integral to membrane|SPOTS complex	protein binding|pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			ovary(1)|breast(1)	2					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	ATAAAATCCTCTGGGTCCACA	0.303													7	33					5.18039e-06	5.79609e-06	0.003080	1	0
GRIN3A	116443	broad.mit.edu	37	9	104432909	104432909	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:104432909G>A	uc004bbp.1	-	3	2386	c.1785C>T	c.(1783-1785)TTC>TTT	p.F595F	GRIN3A_uc004bbq.1_Silent_p.F595F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	595	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TATAGAGGTCGAAGTCAAAGT	0.453													28	36					0	0	0.008361	0	0
CYLC2	1539	broad.mit.edu	37	9	105767367	105767367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:105767367G>A	uc004bbs.2	+	5	524	c.454G>A	c.(454-456)GAA>AAA	p.E152K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	152	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				gaaaggaaaagaagaaaagct	0.095													6	12					0	0	0.001168	0	0
ASTN2	23245	broad.mit.edu	37	9	119413929	119413929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:119413929G>A	uc004bjs.1	-	17	3051	c.2950C>T	c.(2950-2952)CCA>TCA	p.P984S	ASTN2_uc004bjr.1_Missense_Mutation_p.P980S|ASTN2_uc004bjt.1_Missense_Mutation_p.P933S|ASTN2_uc004bjp.1_Missense_Mutation_p.P77S|ASTN2_uc004bjq.1_Missense_Mutation_p.P36S|ASTN2_uc011lxr.1_Missense_Mutation_p.P36S|ASTN2_uc011lxs.1_Missense_Mutation_p.P36S|ASTN2_uc011lxt.1_Missense_Mutation_p.P36S|ASTN2_uc004bjv.1_Missense_Mutation_p.P36S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	984	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CAGGTAGATGGACAGCGCCCC	0.562													17	81					0	0	0.004990	0	0
OR1J4	26219	broad.mit.edu	37	9	125281478	125281478	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:125281478G>T	uc011lyw.1	+	1	59	c.59G>T	c.(58-60)TGG>TTG	p.W20L		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCCCCATCTGGCCAGAGCAG	0.542													24	100					3.01185e-09	3.46204e-09	0.021523	1	0
OR1N1	138883	broad.mit.edu	37	9	125289468	125289468	+	Silent	SNP	G	A	A	rs142517599		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:125289468G>A	uc004bmn.1	-	1	105	c.105C>T	c.(103-105)GTC>GTT	p.V35V		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						CAGTCAAGGTGACAAGATACA	0.483													5	39					0	0	0.001168	0	0
DENND1A	57706	broad.mit.edu	37	9	126143878	126143878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:126143878G>A	uc004bnz.1	-	22	3096	c.2863C>T	c.(2863-2865)CCT>TCT	p.P955S	DENND1A_uc011lzl.1_Missense_Mutation_p.P773S|DENND1A_uc004bny.1_Missense_Mutation_p.P737S|DENND1A_uc011lzm.1_Missense_Mutation_p.P966S|DENND1A_uc010mwh.1_Missense_Mutation_p.P376S	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	955	Pro-rich.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						AGGCCTTGAGGGGGCCTGGGA	0.642													7	22					0	0	0.001984	0	0
TBC1D13	54662	broad.mit.edu	37	9	131568246	131568246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:131568246G>A	uc010myj.2	+	10	1150	c.1027G>A	c.(1027-1029)GCC>ACC	p.A343T	TBC1D13_uc010myk.2_Missense_Mutation_p.A218T|TBC1D13_uc010myl.2_Missense_Mutation_p.A162T	NM_018201	NP_060671	Q9NVG8	TBC13_HUMAN	TBC1 domain family, member 13	343	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0						CTCCCTCTTCGCCGATGACAA	0.582													11	33					0	0	0.016723	0	0
LAMC3	10319	broad.mit.edu	37	9	133943608	133943608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:133943608G>A	uc004caa.1	+	15	2835	c.2737G>A	c.(2737-2739)GGC>AGC	p.G913S		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	913	Laminin EGF-like 9.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		GCCTGGGAGGGGCTGCCGGAG	0.667													4	36					0	0	0.009096	0	0
C9orf96	169436	broad.mit.edu	37	9	136260750	136260750	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:136260750G>A	uc004cdk.2	+	9	787	c.726G>A	c.(724-726)CGG>CGA	p.R242R	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	242	Protein kinase.						ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		TGCATCTGCGGAAGTCCCTCC	0.567													20	55					0	0	0.021523	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407442	1407442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:1407442C>T	uc010nct.2	+	6	572	c.250C>T	c.(250-252)CGT>TGT	p.R84C	CSF2RA_uc011mhb.1_Missense_Mutation_p.R84C|CSF2RA_uc004cpq.2_Missense_Mutation_p.R84C|CSF2RA_uc004cpn.2_Missense_Mutation_p.R84C|CSF2RA_uc004cpo.2_Missense_Mutation_p.R84C|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Missense_Mutation_p.R84C|CSF2RA_uc010ncv.2_Missense_Mutation_p.R84C|CSF2RA_uc004cpr.2_Missense_Mutation_p.R84C	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	84	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GTGCACATTTCGTGAAATTTG	0.378													49	303					0	0	0.014410	0	0
KAL1	3730	broad.mit.edu	37	X	8501043	8501043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:8501043C>T	uc004csf.2	-	14	2186	c.2036G>A	c.(2035-2037)AGA>AAA	p.R679K		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	679					axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						AGTTTAGTATCTTTCTGGAGA	0.388													9	27					0	0	0.008291	0	0
CLCN4	1183	broad.mit.edu	37	X	10181845	10181845	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:10181845G>A	uc004csy.3	+	11	2131	c.1701G>A	c.(1699-1701)GGG>GGA	p.G567G	CLCN4_uc011mid.1_Silent_p.G473G	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	567	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						ATGCATTTGGGAAAGAAGGCA	0.542													26	79					0	0	0.004656	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411269	23411269	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:23411269A>T	uc004dal.3	+	3	1642	c.1634A>T	c.(1633-1635)CAG>CTG	p.Q545L		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	545					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						ACTACTGCCCAGCAAAAGTAC	0.418													6	85					0	0	0.001984	0	0
FAM48B2	170067	broad.mit.edu	37	X	24328984	24328984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:24328984G>A	uc011mjw.1	-	1	2449	c.2449C>T	c.(2449-2451)CCC>TCC	p.P817S		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	817											0						AAGCCTCAGGGAGCTGGAGGG	0.493													6	20					0	0	0.001168	0	0
FAM47A	158724	broad.mit.edu	37	X	34149398	34149398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:34149398C>T	uc004ddg.2	-	1	1031	c.998G>A	c.(997-999)GGA>GAA	p.G333E		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	333										ovary(4)|central_nervous_system(1)	5						ATGGGACTCTCCAGTCTCCGG	0.637													12	24					0	0	0.010729	0	0
CXorf59	286464	broad.mit.edu	37	X	36091444	36091444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:36091444G>A	uc004ddk.1	+	4	565	c.379G>A	c.(379-381)GGA>AGA	p.G127R		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	127						integral to membrane		p.G127*(1)		central_nervous_system(1)	1						CTGGCCTGAAGGACCCCATTC	0.388													38	119					0	0	0.009718	0	0
ZNF182	7569	broad.mit.edu	37	X	47836836	47836836	+	Missense_Mutation	SNP	C	T	T	rs144331049		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:47836836C>T	uc004dir.2	-	7	996	c.650G>A	c.(649-651)CGA>CAA	p.R217Q	ZNF182_uc004dis.2_Missense_Mutation_p.R198Q|ZNF182_uc004dit.2_Missense_Mutation_p.R217Q|ZNF182_uc011mlu.1_Missense_Mutation_p.R197Q	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	217	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						GCCTTTCTTTCGCCTAAGACC	0.393													13	63					0	0	0.004007	0	0
ZNF182	7569	broad.mit.edu	37	X	47842375	47842375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:47842375C>T	uc004dir.2	-	6	609	c.263G>A	c.(262-264)GGA>GAA	p.G88E	ZNF182_uc004dis.2_Missense_Mutation_p.G69E|ZNF182_uc004dit.2_Missense_Mutation_p.G88E|ZNF182_uc011mlu.1_Missense_Mutation_p.G69E	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	88	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TGGGATTTTTCCTTCTGCCGG	0.483													18	69					0	0	0.008871	0	0
TBC1D25	4943	broad.mit.edu	37	X	48403396	48403396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:48403396C>T	uc004dka.1	+	3	484	c.373C>T	c.(373-375)CGG>TGG	p.R125W	TBC1D25_uc011mly.1_Missense_Mutation_p.R67W|TBC1D25_uc004dkb.1_Intron|TBC1D25_uc011mlz.1_Intron|TBC1D25_uc011mma.1_5'UTR|TBC1D25_uc004dkc.1_Intron|TBC1D25_uc011mmb.1_Missense_Mutation_p.R129W|TBC1D25_uc011mmc.1_Intron|TBC1D25_uc011mmd.1_5'UTR	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	125						intracellular	Rab GTPase activator activity			ovary(1)	1						TGTAGATATTCGGCCCTCGGA	0.547													10	47					0	0	0.013537	0	0
KCND1	3750	broad.mit.edu	37	X	48826219	48826219	+	Missense_Mutation	SNP	C	T	T	rs141006798		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:48826219C>T	uc004dlx.1	-	1	2033	c.460G>A	c.(460-462)GAG>AAG	p.E154K	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	154	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						CCGGCCTGCTCTGCCTCCTCA	0.667													7	21					0	0	0.001984	0	0
DGKK	139189	broad.mit.edu	37	X	50146129	50146129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:50146129G>A	uc010njr.1	-	7	1298	c.1238C>T	c.(1237-1239)GCA>GTA	p.A413V		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	413	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					ATGACACACTGCACACTGAGA	0.453													5	21					0	0	0.001168	0	0
XAGE3	170626	broad.mit.edu	37	X	52893847	52893847	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:52893847C>T	uc004dre.2	-	4	330	c.270G>A	c.(268-270)GGG>GGA	p.G90G	XAGE3_uc004drf.2_Silent_p.G90G	NM_130776	NP_570132	Q8WTP9	GAGD4_HUMAN	XAGE-3 protein	90											0						GCAGAATCTTCCCCTGGTCAT	0.398													27	78					0	0	0.007291	0	0
ALAS2	212	broad.mit.edu	37	X	55041298	55041298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:55041298C>T	uc004dua.3	-	9	1457	c.1319G>A	c.(1318-1320)GGA>GAA	p.G440E	ALAS2_uc004dub.3_Missense_Mutation_p.G427E|ALAS2_uc004dud.3_Missense_Mutation_p.G403E	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	440					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	GCCCTCCTCTCCCTTGAGCAG	0.612													6	15					0	0	0.001168	0	0
FAM123B	139285	broad.mit.edu	37	X	63410058	63410058	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:63410058G>A	uc004dvo.2	-	2	3382	c.3109C>T	c.(3109-3111)CAG>TAG	p.Q1037*		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	1037	Pro-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						GCCTGTGGCTGGAGGTTATAG	0.597													21	31					0	0	0.008871	0	0
SLC7A3	84889	broad.mit.edu	37	X	70148386	70148386	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:70148386G>A	uc004dyn.2	-	4	785	c.627C>T	c.(625-627)TTC>TTT	p.F209F	SLC7A3_uc004dyo.2_Silent_p.F209F	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	209	Helical; Name=5; (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CCCCCTTAACGAAGCCAGAGA	0.512													7	14					0	0	0.001984	0	0
ACRC	93953	broad.mit.edu	37	X	70824016	70824016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:70824016G>A	uc004eae.2	+	8	1390	c.889G>A	c.(889-891)GAC>AAC	p.D297N	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	297	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					AGCTTCCGACGACAGCAGTGA	0.522													30	200					0	0	0.007291	0	0
CXCR3	2833	broad.mit.edu	37	X	70836809	70836809	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:70836809G>A	uc004eaf.2	-	2	581	c.513C>T	c.(511-513)ACC>ACT	p.T171T	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Silent_p.T218T	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	171	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					CAGCCAGGCAGGTGAGGGTCA	0.542													10	38					0	0	0.008291	0	0
CDX4	1046	broad.mit.edu	37	X	72667221	72667221	+	Silent	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:72667221C>T	uc011mqk.1	+	1	132	c.132C>T	c.(130-132)TTC>TTT	p.F44F		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	44						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					CCTCCAATTTCGCTGCGGCAC	0.642													8	30					0	0	0.003080	0	0
XIST	7503	broad.mit.edu	37	X	73068079	73068080	+	RNA	DNP	GG	AA	AA			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:73068079_73068080GG>AA	uc004ebm.1	-	1		c.4509_4510CC>TT				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGAATATGAGGGGATGAGACCC	0.421													9	14					0	0	0.004672	0	0
MCART6	401612	broad.mit.edu	37	X	103349591	103349591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:103349591C>T	uc004elu.2	-	2	531	c.350G>A	c.(349-351)CGC>CAC	p.R117H		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	117	Helical; Name=3; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						GGCAGCCCAGCGGTGTCCCAG	0.587													26	129					0	0	0.021523	0	0
CXorf57	55086	broad.mit.edu	37	X	105865956	105865956	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:105865956G>C	uc004emi.3	+	2	870	c.719G>C	c.(718-720)AGG>ACG	p.R240T	CXorf57_uc004emj.3_Missense_Mutation_p.R240T|CXorf57_uc004emh.2_Missense_Mutation_p.R240T	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	240										ovary(1)|lung(1)|breast(1)	3						TTGCTTGTGAGGATCTTACAT	0.299													5	64					0	0	0.001168	0	0
CXorf57	55086	broad.mit.edu	37	X	105905302	105905302	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:105905302G>C	uc004emi.3	+	12	2187	c.2036G>C	c.(2035-2037)AGG>ACG	p.R679T	CXorf57_uc004emj.3_Missense_Mutation_p.R582T	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	679										ovary(1)|lung(1)|breast(1)	3						ATAAGTGATAGGTGGGAGAGT	0.378													17	64					0	0	0.006122	0	0
NUP62CL	54830	broad.mit.edu	37	X	106397462	106397462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:106397462G>A	uc004ena.2	-	5	468	c.209C>T	c.(208-210)CCT>CTT	p.P70L	NUP62CL_uc004enb.2_Intron	NM_017681	NP_060151	Q9H1M0	N62CL_HUMAN	nucleoporin 62kDa C-terminal like	70					protein transport	nuclear pore	structural constituent of nuclear pore				0						TGTCATCACAGGAGTTGCTAC	0.388													13	53					0	0	0.013537	0	0
COL4A6	1288	broad.mit.edu	37	X	107430382	107430382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:107430382G>A	uc004enw.3	-	23	2001	c.1898C>T	c.(1897-1899)CCT>CTT	p.P633L	COL4A6_uc004env.3_Missense_Mutation_p.P632L|COL4A6_uc011msn.1_Missense_Mutation_p.P632L|COL4A6_uc010npk.2_Missense_Mutation_p.P632L	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	633	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TTTATCTCCAGGAAGCCCACG	0.532									Alport_syndrome_with_Diffuse_Leiomyomatosis				95	351					0	0	0.014410	0	0
TDGF3	6998	broad.mit.edu	37	X	109765019	109765019	+	RNA	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:109765019G>A	uc004eos.1	+	1		c.1480G>A				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						ACTGAAAGATGATCATTTGTT	0.348													7	19					0	0	0.001984	0	0
AGTR2	186	broad.mit.edu	37	X	115303752	115303752	+	Missense_Mutation	SNP	G	T	T	rs144663835		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:115303752G>T	uc004eqh.3	+	3	426	c.219G>T	c.(217-219)AAG>AAT	p.K73N		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	73	Cytoplasmic (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						GTTGTCAAAAGGGTCCTAAAA	0.353													39	166					1.30998e-17	1.53817e-17	0.005524	1	0
PGRMC1	10857	broad.mit.edu	37	X	118377142	118377142	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:118377142G>A	uc004erb.2	+	3	629	c.513G>A	c.(511-513)CTG>CTA	p.L171L	PGRMC1_uc011mts.1_Silent_p.L119L	NM_006667	NP_006658	O00264	PGRC1_HUMAN	progesterone receptor membrane component 1	171	Cytochrome b5 heme-binding.|Cytoplasmic (Potential).					cell surface|endoplasmic reticulum membrane|integral to membrane|microsome|nucleolus	heme binding|protein binding|receptor activity|steroid binding				0						GCAAACTGCTGAAGGAGGGGG	0.408													15	56					0	0	0.004990	0	0
ATP1B4	23439	broad.mit.edu	37	X	119510247	119510247	+	Missense_Mutation	SNP	C	T	T	rs149447498		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:119510247C>T	uc004esr.2	+	6	856	c.772C>T	c.(772-774)CGT>TGT	p.R258C	ATP1B4_uc004esq.2_Missense_Mutation_p.R254C|ATP1B4_uc011mtx.1_Missense_Mutation_p.R223C|ATP1B4_uc011mty.1_Missense_Mutation_p.R215C	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	258	Perinuclear space (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						TGTAGGCTTTCGTCCTGAGCT	0.363													21	74					0	0	0.016522	0	0
ODZ1	10178	broad.mit.edu	37	X	123630865	123630865	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:123630865C>T	uc004euj.2	-	20	3759	c.3695_splice	c.e20+1	p.S1232_splice	ODZ1_uc011muj.1_Splice_Site_p.R1231_splice|ODZ1_uc010nqy.2_Splice_Site_p.R1232_splice	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3						immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGAAGACTTACCTTAATTCCA	0.378													14	104					0	0	0.004007	0	0
CT45A5	441521	broad.mit.edu	37	X	134947978	134947978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:134947978G>A	uc004eze.2	-	3	592	c.347C>T	c.(346-348)CCC>CTC	p.P116L	CT45A5_uc011mvu.1_Missense_Mutation_p.P116L	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	116											0						TTGGCTTTTGGGAGAGGAGGC	0.423													102	219					0	0	0.014410	0	0
HTATSF1	27336	broad.mit.edu	37	X	135582921	135582921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:135582921C>T	uc004ezw.2	+	5	936	c.514C>T	c.(514-516)CTT>TTT	p.L172F	HTATSF1_uc004ezx.2_Missense_Mutation_p.L172F	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	172	RRM 1.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TAAGGTCAAACTTTACAAAGA	0.318													46	155					0	0	0.014410	0	0
ATP11C	286410	broad.mit.edu	37	X	138870379	138870379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:138870379C>T	uc004faz.2	-	14	1600	c.1501G>A	c.(1501-1503)GAA>AAA	p.E501K	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.E501K	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	501	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					AAAGCTATTTCATCTGGTGAA	0.353													17	66					0	0	0.004007	0	0
GABRQ	55879	broad.mit.edu	37	X	151820192	151820192	+	Nonsense_Mutation	SNP	C	T	T	rs142261040		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:151820192C>T	uc004ffp.1	+	8	1125	c.1105C>T	c.(1105-1107)CGA>TGA	p.R369*		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	369						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGGAGACCCCGAAGAGTCAT	0.517													11	106					0	0	0.013537	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869869	151869869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:151869869G>A	uc004ffq.1	+	3	753	c.559G>A	c.(559-561)GAT>AAT	p.D187N	MAGEA6_uc004ffr.1_Missense_Mutation_p.D187N|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	187	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCTCCTACGATGGCCTGCT	0.557													42	136					0	0	0.006230	0	0
CSAG1	158511	broad.mit.edu	37	X	151908875	151908875	+	Silent	SNP	G	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:151908875G>A	uc004fge.2	+	4	442	c.114G>A	c.(112-114)AGG>AGA	p.R38R	CSAG1_uc004fgf.2_Silent_p.R38R|CSAG1_uc004fgd.2_RNA	NM_153478	NP_705611	Q6PB30	CSAG1_HUMAN	chondrosarcoma associated gene 1 precursor	38										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGATGTCCAGGAAACCACGAG	0.512													101	154					0	0	0.014410	0	0
PNMA5	114824	broad.mit.edu	37	X	152158823	152158823	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:152158823C>A	uc010ntw.2	-	3	1659	c.1320G>T	c.(1318-1320)ATG>ATT	p.M440I	PNMA5_uc004fha.3_Missense_Mutation_p.M440I|PNMA5_uc010ntx.2_Missense_Mutation_p.M440I|PNMA5_uc004fgy.3_Missense_Mutation_p.M440I	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	440					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGGGATGGCTCATGGCCCCAG	0.617													11	129					1.49906e-05	1.6738e-05	0.020292	1	0
G6PD	2539	broad.mit.edu	37	X	153760406	153760406	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:153760406C>A	uc004fly.1	-	12	1567	c.1454G>T	c.(1453-1455)GGC>GTC	p.G485V	G6PD_uc004flx.1_Missense_Mutation_p.G515V	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	485					cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCCTCACCTGCCATAAATATA	0.632													21	27					3.62473e-10	4.17532e-10	0.012319	1	0
CTAG2	30848	broad.mit.edu	37	X	153880777	153880777	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:153880777A>G	uc004fmi.1	-	2	451	c.398T>C	c.(397-399)CTG>CCG	p.L133P	CTAG2_uc004fmh.1_Missense_Mutation_p.L133P	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	133						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGACATAAACAGTAGGTTGCC	0.652													16	92					0	0	0.003163	0	0
ZC3H18	124245	broad.mit.edu	37	16	88643999	88643999	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr16:88643999delG	uc002fky.2	+	2	668	c.468delG	c.(466-468)GAGfs	p.E156fs	ZC3H18_uc010voy.1_Intron|ZC3H18_uc010voz.1_Frame_Shift_Del_p.E156fs|ZC3H18_uc010vpa.1_Frame_Shift_Del_p.E156fs	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	156						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		AGGATGATGAGGAGAAAGGCG	0.582													10	34	---	---	---	---					
NLRC4	58484	broad.mit.edu	37	2	32475300	32475300	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:32475300delT	uc002roi.2	-	4	1879	c.1633delA	c.(1633-1635)ATTfs	p.I545fs	NLRC4_uc002roj.1_Frame_Shift_Del_p.I545fs|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	545					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GCTTTCAGAATTTCTTGCTCA	0.433													13	52	---	---	---	---					
THADA	63892	broad.mit.edu	37	2	43783692	43783693	+	In_Frame_Ins	INS	-	TCCTAGAAT	TCCTAGAAT			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr2:43783692_43783693insTCCTAGAAT	uc002rsw.3	-	17	2817_2818	c.2465_2466insATTCTAGGA	c.(2464-2466)GAT>GAATTCTAGGAT	p.821_822insEF*	THADA_uc010far.2_In_Frame_Ins_p.90_91insEF*|THADA_uc002rsx.3_In_Frame_Ins_p.821_822insEF*|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_Intron|THADA_uc002rsz.2_In_Frame_Ins_p.531_532insEF*|THADA_uc010fat.1_Intron|THADA_uc002rta.2_In_Frame_Ins_p.531_532insEF*|THADA_uc002rtb.1_In_Frame_Ins_p.821_822insEF*|THADA_uc002rtc.3_In_Frame_Ins_p.821_822insEF*	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	821_822							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GTTTCCCCGAATCCTAGAATAA	0.361													34	311	---	---	---	---					
ZBTB5	9925	broad.mit.edu	37	9	37442342	37442343	+	In_Frame_Ins	INS	-	CTA	CTA	rs138735984		TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chr9:37442342_37442343insCTA	uc003zzx.2	-	2	406_407	c.206_207insTAG	c.(205-207)AGC>AGTAGC	p.69_69S>SS		NM_014872	NP_055687	O15062	ZBTB5_HUMAN	zinc finger and BTB domain containing 5	69	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(29;0.00733)|Lung(182;0.226)		TCACCACCTCGCTATCCAGCTG	0.540													21	106	---	---	---	---					
STAG2	10735	broad.mit.edu	37	X	123171393	123171394	+	Frame_Shift_Ins	INS	-	GATA	GATA			TCGA-EE-A29T-06A-11D-A197-08	TCGA-EE-A29T-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef8ffb5b-2304-45e0-be3d-fc6b6a30b5c5	fc3c8fc4-f3b7-4499-baf7-0e1c1151b5a7	g.chrX:123171393_123171394insGATA	uc004etz.3	+	5	644_645	c.305_306insGATA	c.(304-306)TGGfs	p.W102fs	STAG2_uc004eua.2_Frame_Shift_Ins_p.W102fs|STAG2_uc004eub.2_Frame_Shift_Ins_p.W102fs|STAG2_uc004euc.2_Frame_Shift_Ins_p.W102fs|STAG2_uc004eud.2_Frame_Shift_Ins_p.W102fs|STAG2_uc004eue.2_Frame_Shift_Ins_p.W102fs	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	102					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						GTAGATGATTGGATAGAATCAT	0.307													39	78	---	---	---	---					
