Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF11	440560	broad.mit.edu	37	1	12887610	12887610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:12887610C>T	uc001auk.2	-	3	443	c.247G>A	c.(247-249)GGG>AGG	p.G83R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	83											0						AGGAAGCACCCATGGGCCATA	0.483000													56	614					0	0	0.000781405	0	0
PADI3	51702	broad.mit.edu	37	1	17599926	17599926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:17599926C>T	uc001bai.2	+	10	1179	c.1139C>T	c.(1138-1140)CCT>CTT	p.P380L		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	380					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CAGGATTTCCCTTACAAAAGA	0.622000													8	31					0	0	0.000274275	0	0
SLC9A1	6548	broad.mit.edu	37	1	27428548	27428548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:27428548G>A	uc001bnm.2	-	9	2520	c.1894C>T	c.(1894-1896)CGC>TGC	p.R632C	SLC9A1_uc001bnl.2_Missense_Mutation_p.R136C|SLC9A1_uc010ofk.1_Missense_Mutation_p.R293C	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	632	Cytoplasmic (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	AGGATTTTGCGGATCTCCTCC	0.617000													13	97					0	0	0.000566183	0	0
CCDC30	728621	broad.mit.edu	37	1	43021909	43021909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:43021909G>A	uc009vwk.1	+	5	618	c.508G>A	c.(508-510)GAG>AAG	p.E170K	CCDC30_uc001chm.2_5'UTR|CCDC30_uc001chn.2_Intron|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Intron	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	170	Potential.										0						GGGGCAGAAGGAGGAGGGCTC	0.438000													20	45					0	0	0.000958276	0	0
TIE1	7075	broad.mit.edu	37	1	43783252	43783252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:43783252G>A	uc001ciu.2	+	16	2717	c.2638G>A	c.(2638-2640)GAC>AAC	p.D880N	TIE1_uc010oke.1_Missense_Mutation_p.D835N|TIE1_uc009vwq.2_Missense_Mutation_p.D836N|TIE1_uc010okg.1_Missense_Mutation_p.D525N	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	880	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTCTGAAAATGACCATCGTGA	0.493000													78	201					0	0	0.000781405	0	0
CYP4B1	1580	broad.mit.edu	37	1	47279728	47279728	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:47279728C>T	uc001cqm.3	+	6	849	c.765C>T	c.(763-765)GAC>GAT	p.D255D	CYP4B1_uc009vyl.1_Silent_p.D92D|CYP4B1_uc001cqn.3_Silent_p.D256D|CYP4B1_uc009vym.2_Silent_p.D241D|CYP4B1_uc010omk.1_Silent_p.D92D|CYP4B1_uc010oml.1_Silent_p.D93D	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	255					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TGGCCCATGACCATACAGGTG	0.612000													21	126					0	0	0.000375601	0	0
RSBN1	54665	broad.mit.edu	37	1	114309021	114309021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:114309021G>A	uc001edq.2	-	7	2026	c.1990C>T	c.(1990-1992)CGT>TGT	p.R664C	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	664						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTAGCATAACGAATGCCTTCC	0.393000													59	35					0	0	0.000781405	0	0
TRIM33	51592	broad.mit.edu	37	1	114940389	114940389	+	Silent	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:114940389A>G	uc001eew.2	-	20	3349	c.3265T>C	c.(3265-3267)TTG>CTG	p.L1089L	TRIM33_uc010owr.1_Silent_p.L703L|TRIM33_uc010ows.1_Silent_p.L721L|TRIM33_uc001eex.2_Silent_p.L1072L	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	1089					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AACTCTGGCAAAGGTGCGAAG	0.473000			T	RET	papillary thyroid								17	120					0	0	0.000422831	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			132	89					0	0	0.000781405	0	0
IVL	3713	broad.mit.edu	37	1	152883848	152883848	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:152883848G>A	uc001fau.2	+	2	1621	c.1575G>A	c.(1573-1575)CAG>CAA	p.Q525Q		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	525	39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].|38.				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			atctggagcagcaggaggggc	0.164000													4	9					0	0	0.00024832	0	0
OR10J1	26476	broad.mit.edu	37	1	159410164	159410164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:159410164G>A	uc010piv.1	+	1	616	c.616G>A	c.(616-618)GAA>AAA	p.E206K	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	206	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CACTGTCAATGAAATCCTGAC	0.438000													43	57					0	0	0.000781405	0	0
CRB1	23418	broad.mit.edu	37	1	197396583	197396583	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:197396583G>A	uc001gtz.2	+	7	2264	c.2129_splice	c.e7-1	p.E710_splice	CRB1_uc010poz.1_Splice_Site_p.E641_splice|CRB1_uc010ppa.1_Splice_Site|CRB1_uc009wza.2_Splice_Site_p.E598_splice|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_Splice_Site|CRB1_uc010ppd.1_Splice_Site_p.E191_splice|CRB1_uc001gub.1_Splice_Site_p.E359_splice	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor						cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TGACATTGAAGAGTATGTGGC	0.388000													11	55					0	0	0.000219431	0	0
OBSCN	84033	broad.mit.edu	37	1	228433280	228433280	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:228433280C>T	uc009xez.1	+	12	3692	c.3648C>T	c.(3646-3648)GTC>GTT	p.V1216V	OBSCN_uc001hsn.2_Silent_p.V1216V	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1216	Ig-like 12.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCATGGAGGTCAAGGGCTGCA	0.602000													19	28					0	0	0.00074312	0	0
PCNXL2	80003	broad.mit.edu	37	1	233344346	233344346	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:233344346G>A	uc001hvl.2	-	13	3016	c.2781C>T	c.(2779-2781)GCC>GCT	p.A927A	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Silent_p.A226A	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	927						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GAGGGTGCCTGGCTTTGGCCC	0.433000													10	28					0	0	0.000442599	0	0
C1orf150	148823	broad.mit.edu	37	1	247712498	247712498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:247712498G>A	uc001idf.2	+	1	50	c.5G>A	c.(4-6)GGA>GAA	p.G2E	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_Intron	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	2											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GAAAAGATGGGAAATTATCTC	0.483000													8	35					0	0	0.000673444	0	0
OR13G1	441933	broad.mit.edu	37	1	247835593	247835593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:247835593G>A	uc001idi.1	-	1	751	c.751C>T	c.(751-753)CCT>TCT	p.P251S		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TAGATTACAGGAGAATAGTAA	0.453000													6	39					0	0	0.000157383	0	0
OR2M2	391194	broad.mit.edu	37	1	248344204	248344204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:248344204G>A	uc010pzf.1	+	1	917	c.917G>A	c.(916-918)GGA>GAA	p.G306E		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AAGATCTTAGGAAAGGGCAAG	0.398000													57	87					0	0	0.000781405	0	0
OR2M3	127062	broad.mit.edu	37	1	248366638	248366638	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:248366638A>C	uc010pzg.1	+	1	269	c.269A>C	c.(268-270)AAG>ACG	p.K90T		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCTGGCAGCAAGTCCATTTCT	0.502000													9	201					0	0	0.000442599	0	0
OR14C36	127066	broad.mit.edu	37	1	248512089	248512089	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr1:248512089A>G	uc010pzl.1	+	1	13	c.13A>G	c.(13-15)ACC>GCC	p.T5A		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCCCAATTCAACCACCGTGAT	0.398000													19	28					0	0	0.000229342	0	0
LOC441666	441666	broad.mit.edu	37	10	42832213	42832213	+	RNA	SNP	T	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr10:42832213T>C	uc010qey.1	-	3		c.1762A>G				NR_024380				Homo sapiens noncoding mRNA sequence.												0						AGCTTTGACGTATTCTTGACA	0.348000													2	1					0	0	6.4e-05	0	0
TYSND1	219743	broad.mit.edu	37	10	71905212	71905212	+	Silent	SNP	T	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr10:71905212T>C	uc001jqr.2	-	1	1285	c.1131A>G	c.(1129-1131)GAA>GAG	p.E377E	TYSND1_uc001jqq.2_Intron|TYSND1_uc001jqs.2_Silent_p.E377E|TYSND1_uc001jqt.2_Intron	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	377	Serine protease.				proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						CCCTGGCTGCTTCCCGAGGGG	0.657000													7	4					0	0	0.000274275	0	0
TYSND1	219743	broad.mit.edu	37	10	71905214	71905214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr10:71905214C>T	uc001jqr.2	-	1	1283	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	TYSND1_uc001jqq.2_Intron|TYSND1_uc001jqs.2_Missense_Mutation_p.E377K|TYSND1_uc001jqt.2_Intron	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	377	Serine protease.				proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						CTGGCTGCTTCCCGAGGGGAC	0.667000													7	4					0	0	0.000157383	0	0
OR52E2	119678	broad.mit.edu	37	11	5079889	5079889	+	Silent	SNP	C	T	T	rs148031312		TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:5079889C>T	uc010qyw.1	-	1	969	c.969G>A	c.(967-969)ACG>ACA	p.T323T		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		TTCAGAACCTCGTATGTATTA	0.318000													26	20					0	0	0.000227799	0	0
SPON1	10418	broad.mit.edu	37	11	14284396	14284396	+	Missense_Mutation	SNP	G	A	A	rs148033537	by1000genomes	TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:14284396G>A	uc001mle.2	+	16	2673	c.2135G>A	c.(2134-2136)CGA>CAA	p.R712Q		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	712	TSP type-1 5.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		ACTGTGCAGCGAAAAAAGTGC	0.547000													18	10					0	0	0.00074312	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702113	60702113	+	Silent	SNP	C	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:60702113C>A	uc001nqj.2	+	9	1906	c.1713C>A	c.(1711-1713)CCC>CCA	p.P571P	TMEM132A_uc001nqi.2_Silent_p.P572P|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	571	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						TGCTTGGCCCCGACTGGCTGC	0.741000													9	11					1.76689e-08	3.12756e-07	0.000442599	1	0
NAALADL1	10004	broad.mit.edu	37	11	64825928	64825928	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:64825928G>A	uc001ocn.2	-	1	82	c.66C>T	c.(64-66)ATC>ATT	p.I22I	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	22	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						AGTGGCCGAGGATGATCCCCA	0.642000													12	16					0	0	0.00010058	0	0
KLHL35	283212	broad.mit.edu	37	11	75134908	75134908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:75134908G>A	uc001owm.1	-	5	950	c.731C>T	c.(730-732)CCC>CTC	p.P244L		NM_001039548	NP_001034637	Q6PF15	KLH35_HUMAN	kelch-like 35	244	Kelch 4.										0						GTCCTCCTTGGGGTCAAAGCA	0.637000													10	14					0	0	0.000442599	0	0
FAT3	120114	broad.mit.edu	37	11	92258086	92258086	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:92258086G>A	uc001pdj.3	+	2	3596	c.3579G>A	c.(3577-3579)CAG>CAA	p.Q1193Q		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1193	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAAATCCTCAGAATTTTTTTG	0.383000										TCGA Ovarian(4;0.039)			103	197					0	0	0.000781405	0	0
CNTN5	53942	broad.mit.edu	37	11	99872785	99872785	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:99872785G>A	uc001pga.2	+	9	1236	c.897G>A	c.(895-897)GAG>GAA	p.E299E	CNTN5_uc009ywv.1_Silent_p.E299E|CNTN5_uc001pfz.2_Silent_p.E299E|CNTN5_uc001pgb.2_Silent_p.E225E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	299					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GAGAATATGAGCCGAAAATTG	0.358000													7	24					0	0	0.000673444	0	0
TRPC6	7225	broad.mit.edu	37	11	101323826	101323826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:101323826C>T	uc001pgk.3	-	13	3081	c.2656G>A	c.(2656-2658)GAA>AAA	p.E886K	TRPC6_uc009ywy.2_Missense_Mutation_p.E770K	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	886	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		TGCTTAATTTCCTTCAGTTCC	0.398000													45	53					0	0	0.000781405	0	0
BIRC2	329	broad.mit.edu	37	11	102248425	102248425	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:102248425A>G	uc001pgy.2	+	7	2964	c.1565A>G	c.(1564-1566)AAC>AGC	p.N522S	BIRC2_uc010ruq.1_Missense_Mutation_p.N473S|BIRC2_uc010rur.1_Missense_Mutation_p.N522S	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	522	CARD.				cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		GCTGCGGCCAACATCTTCAAA	0.318000													14	50					0	0	0.000422831	0	0
ELMOD1	55531	broad.mit.edu	37	11	107501439	107501439	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:107501439G>A	uc010rvs.1	+	4	581	c.177G>A	c.(175-177)AGG>AGA	p.R59R	ELMOD1_uc001pjm.2_Silent_p.R59R|ELMOD1_uc010rvt.1_Silent_p.R53R	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	59					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		CATCACTGAGGGATTCTAAAA	0.308000													13	20					0	0	0.000566183	0	0
EXPH5	23086	broad.mit.edu	37	11	108381788	108381789	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:108381788_108381789CC>TT	uc001pkk.2	-	6	4556_4557	c.4445_4446GG>AA	c.(4444-4446)AGG>AAA	p.R1482K	EXPH5_uc010rvy.1_Missense_Mutation_p.R1294K|EXPH5_uc010rvz.1_Missense_Mutation_p.R1326K|EXPH5_uc010rwa.1_Missense_Mutation_p.R1406K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1482					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CTCTGCCTTCCCTAGGCTGTGA	0.480000													16	19					0	0	6.4e-05	0	0
MLL	4297	broad.mit.edu	37	11	118374290	118374290	+	Silent	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:118374290A>G	uc001pta.2	+	27	7697	c.7674A>G	c.(7672-7674)CCA>CCG	p.P2558P	MLL_uc001ptb.2_Silent_p.P2561P	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2558					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CCACAGAACCAATTTCAGCCT	0.433000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								27	34					0	0	0.000409698	0	0
TRIM29	23650	broad.mit.edu	37	11	120008273	120008273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr11:120008273G>A	uc001pwz.2	-	1	591	c.467C>T	c.(466-468)GCC>GTC	p.A156V	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	156					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		GCCCGTGTCGGCCCGGGGGTA	0.642000													20	49					0	0	0.000295444	0	0
ERC1	23085	broad.mit.edu	37	12	1399136	1399136	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:1399136G>C	uc001qjb.2	+	15	2979	c.2738G>C	c.(2737-2739)CGG>CCG	p.R913P	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.R885P|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Missense_Mutation_p.R913P|ERC1_uc010sdv.1_Missense_Mutation_p.R621P|ERC1_uc001qje.2_RNA	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	913	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			ACTAATCTTCGGGCAGAGAGA	0.433000													31	74					0	0	0.000491102	0	0
NCAPD2	9918	broad.mit.edu	37	12	6637023	6637023	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:6637023C>T	uc001qoo.2	+	23	3034	c.2988C>T	c.(2986-2988)ATC>ATT	p.I996I	NCAPD2_uc009zen.1_Silent_p.I868I|NCAPD2_uc010sfd.1_Silent_p.I951I	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	996					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						CAGAACTAATCCGTGGCATCT	0.493000													68	168					0	0	0.000781405	0	0
ETV6	2120	broad.mit.edu	37	12	12022474	12022474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:12022474C>T	uc001qzz.2	+	5	854	c.580C>T	c.(580-582)CCT>TCT	p.P194S	ETV6_uc001raa.1_5'UTR	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	194						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				CCGGCCTTCTCCTGACCCCGA	0.637000			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								53	171					0	0	0.000781405	0	0
GRIN2B	2904	broad.mit.edu	37	12	13769424	13769424	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:13769424C>T	uc001rbt.2	-	5	1472	c.1293G>A	c.(1291-1293)AGG>AGA	p.R431R		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	431	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGACTGTGTTCCTCATGCAGG	0.517000													18	62					0	0	0.000958276	0	0
NELL2	4753	broad.mit.edu	37	12	45000984	45000984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:45000984G>A	uc001rog.2	-	15	2226	c.1631C>T	c.(1630-1632)CCA>CTA	p.P544L	NELL2_uc001rof.3_Missense_Mutation_p.P543L|NELL2_uc001roh.2_Missense_Mutation_p.P544L|NELL2_uc009zkd.2_Missense_Mutation_p.P543L|NELL2_uc010skz.1_Missense_Mutation_p.P594L|NELL2_uc010sla.1_Missense_Mutation_p.P567L|NELL2_uc001roi.1_Missense_Mutation_p.P544L|NELL2_uc010slb.1_Missense_Mutation_p.P543L	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	544	EGF-like 4.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		GAAGCCTTGTGGGCAGGCACA	0.393000													18	12					0	0	0.000375601	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457234	45457234	+	RNA	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:45457234G>A	uc001rol.2	-	1		c.1961C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						ATCAATGCTGGGAGTAATAGG	0.433000													8	7					0	0	0.000157383	0	0
PTPRR	5801	broad.mit.edu	37	12	71286730	71286730	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:71286730A>C	uc001swi.1	-	2	502	c.86T>G	c.(85-87)TTT>TGT	p.F29C		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	29	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		AATTGCCAAAAAATGATCATT	0.378000													21	31					0	0	0.000175454	0	0
ARPC3	10094	broad.mit.edu	37	12	110883266	110883266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr12:110883266G>A	uc001tqq.2	-	2	190	c.97C>T	c.(97-99)CCC>TCC	p.P33S		NM_005719	NP_005710	O15145	ARPC3_HUMAN	actin related protein 2/3 complex subunit 3	33					cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton			ovary(1)	1						CTCTCTCTGGGGGCAGGTCCT	0.403000													31	24					0	0	0.000409698	0	0
SGCG	6445	broad.mit.edu	37	13	23853509	23853509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr13:23853509G>A	uc001uom.2	+	5	552	c.397G>A	c.(397-399)GTA>ATA	p.V133I	SGCG_uc009zzv.2_Missense_Mutation_p.V133I|SGCG_uc009zzw.2_Missense_Mutation_p.V133I	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	133	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		TCCCAAAATGGTAGAAGTCCA	0.388000													19	28					0	0	0.000958276	0	0
SPATA13	221178	broad.mit.edu	37	13	24860515	24860515	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr13:24860515C>G	uc001upg.1	+	5	997	c.590C>G	c.(589-591)CCC>CGC	p.P197R	SPATA13_uc001upd.1_Missense_Mutation_p.P822R|C1QTNF9_uc001upe.2_RNA|SPATA13_uc010tcy.1_Missense_Mutation_p.P143R|SPATA13_uc010tcz.1_Missense_Mutation_p.P143R|SPATA13_uc010tda.1_Missense_Mutation_p.P141R|SPATA13_uc001uph.2_Missense_Mutation_p.P119R|SPATA13_uc010tdb.1_Missense_Mutation_p.P119R|SPATA13_uc009zzz.1_5'Flank	NM_153023	NP_694568	Q96N96	SPT13_HUMAN	spermatogenesis associated 13	197	SH3.				cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		GCCTGGTTCCCCGCGAGCTTC	0.562000													3	42					0	0	6.4e-05	0	0
NHLRC3	387921	broad.mit.edu	37	13	39613705	39613705	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr13:39613705G>C	uc001uxc.2	+	3	564	c.242G>C	c.(241-243)GGG>GCG	p.G81A	C13orf23_uc001uwy.2_5'Flank|C13orf23_uc001uwz.2_5'Flank|NHLRC3_uc001uxa.1_Missense_Mutation_p.G81A|NHLRC3_uc001uxb.1_Missense_Mutation_p.G81A|NHLRC3_uc001uxd.2_Missense_Mutation_p.G81A|NHLRC3_uc001uxe.2_5'UTR	NM_001012754	NP_001012772	Q5JS37	NHLC3_HUMAN	NHL repeat containing 3 isoform a	81	NHL 1.					extracellular region				skin(1)	1		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;2.37e-08)|Epithelial(112;3.14e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00101)|BRCA - Breast invasive adenocarcinoma(63;0.00335)|GBM - Glioblastoma multiforme(144;0.0128)		CTTCAGAGAGGGGATAACATC	0.363000													3	60					0	0	0.000602214	0	0
SPERT	220082	broad.mit.edu	37	13	46287733	46287733	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr13:46287733G>A	uc001van.1	+	3	653	c.573G>A	c.(571-573)AAG>AAA	p.K191K	SPERT_uc001vao.2_Silent_p.K155K	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	191	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		TGCTCAGCAAGGAGAACAAGA	0.622000													24	58					0	0	0.000878237	0	0
SIAH3	283514	broad.mit.edu	37	13	46357566	46357566	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr13:46357566C>T	uc001vap.2	-	2	844	c.762G>A	c.(760-762)GGG>GGA	p.G254G		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	254					multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						TGATGGCAATCCCAATGGCAA	0.602000													38	76					0	0	0.000228196	0	0
ZFP36L1	677	broad.mit.edu	37	14	69259613	69259613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr14:69259613C>T	uc001xkh.1	-	1	173	c.43G>A	c.(43-45)GAA>AAA	p.E15K	ZFP36L1_uc001xki.1_Missense_Mutation_p.E15K	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	15					regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		CATAAAACTTCGCTCAAGTCG	0.532000													70	47					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	107062402	107062402	+	RNA	SNP	G	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr14:107062402G>C	uc010tyt.1	-	131		c.6193C>G								Parts of antibodies, mostly variable regions.												0						TCCTGGGCCCGACTCCTGCAG	0.597000													5	44					0	0	8.12818e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	107211180	107211180	+	RNA	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr14:107211180G>A	uc010tyt.1	-	18		c.1161C>T								Parts of antibodies, mostly variable regions.												0						GAGAGTTTCAGGGACCCCCCA	0.617000													44	24					0	0	0.000437636	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413745	22413745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:22413745G>A	uc001yuf.2	+	1	44	c.44G>A	c.(43-45)AGA>AAA	p.R15K		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						ATCTCCTACAGAGGCTGCATC	0.507000													29	43					0	0	0.000228196	0	0
PAR4	347745	broad.mit.edu	37	15	25453110	25453110	+	RNA	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:25453110C>T	uc001yzk.1	+	12		c.1678C>T			PAR4_uc010ayo.1_Intron|SNORD115-20_uc001yzq.1_Intron|SNORD115-22_uc001yzr.1_5'Flank					Homo sapiens clone Rt-13I SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						CAGCCAGGTCCCCAGCTCCTG	0.602000													8	8					0	0	0.000157383	0	0
CAPN3	825	broad.mit.edu	37	15	42680027	42680027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:42680027C>T	uc001zpn.1	+	4	881	c.575C>T	c.(574-576)ACC>ATC	p.T192I	CAPN3_uc001zpk.1_5'UTR|CAPN3_uc001zpl.1_Missense_Mutation_p.T105I|CAPN3_uc010udf.1_Missense_Mutation_p.T105I|CAPN3_uc010udg.1_Missense_Mutation_p.T105I|CAPN3_uc001zpo.1_Missense_Mutation_p.T192I|CAPN3_uc001zpp.1_Missense_Mutation_p.T192I	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	192	Calpain catalytic.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		CTGGTTTTCACCAAGTCCAAC	0.502000													31	81					0	0	0.000227799	0	0
MAP1A	4130	broad.mit.edu	37	15	43819242	43819242	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:43819242C>T	uc001zrt.2	+	4	6038	c.5571C>T	c.(5569-5571)CTC>CTT	p.L1857L		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1857						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CTGCACCCCTCTCCCCAGCTC	0.627000													11	10					0	0	0.000673444	0	0
C15orf33	196951	broad.mit.edu	37	15	49880259	49880259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:49880259C>T	uc001zxl.2	-	5	653	c.359G>A	c.(358-360)CGA>CAA	p.R120Q	C15orf33_uc001zxm.2_Missense_Mutation_p.R120Q	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	120										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TTCCCCATATCGTTCCAATTT	0.234000													11	32					0	0	0.00010058	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350470	51350470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:51350470G>A	uc001zyy.2	-	3	587	c.487C>T	c.(487-489)CAC>TAC	p.H163Y		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	163											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		ATGATCTTGTGGGCTTCCTTC	0.453000													77	156					0	0	0.000781405	0	0
TLE3	7090	broad.mit.edu	37	15	70351115	70351115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:70351115G>A	uc002asm.2	-	11	1924	c.805C>T	c.(805-807)CCT>TCT	p.P269S	TLE3_uc002ask.2_Missense_Mutation_p.P213S|TLE3_uc002asl.2_Missense_Mutation_p.P274S|TLE3_uc010ukd.1_Missense_Mutation_p.P262S|TLE3_uc010bik.1_Intron|TLE3_uc010bil.1_Missense_Mutation_p.P269S|TLE3_uc002asn.2_Missense_Mutation_p.P269S|TLE3_uc002asp.2_Missense_Mutation_p.P269S|TLE3_uc002aso.2_Missense_Mutation_p.P269S	NM_005078	NP_005069	Q04726	TLE3_HUMAN	transducin-like enhancer protein 3 isoform a	269	Pro/Ser-rich.				organ morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|protein binding			lung(2)	2						CCATTTTCAGGAGGGGAGTGT	0.602000													10	16					0	0	6.40141e-05	0	0
CYP11A1	1583	broad.mit.edu	37	15	74636194	74636194	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:74636194G>A	uc002axt.2	-	4	920	c.765C>T	c.(763-765)TTC>TTT	p.F255F	CYP11A1_uc002axs.2_Silent_p.F97F|CYP11A1_uc010bjm.1_Silent_p.F97F|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Silent_p.F255F|CYP11A1_uc010bjp.1_RNA|CYP11A1_uc010ulj.1_Silent_p.F35F	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	255					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	TGAACAGACGGAACAGGTCTG	0.562000													42	104					0	0	0.000781405	0	0
LRRK1	79705	broad.mit.edu	37	15	101562674	101562674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr15:101562674C>T	uc002bwr.2	+	15	2258	c.1939C>T	c.(1939-1941)CCG>TCG	p.P647S	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	647	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CGTGGGTCCCCCGCGCCAGGG	0.592000													38	65					0	0	0.000509022	0	0
C16orf71	146562	broad.mit.edu	37	16	4790608	4790608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr16:4790608C>T	uc002cxn.2	+	4	1193	c.731C>T	c.(730-732)TCC>TTC	p.S244F		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	244										central_nervous_system(1)	1						GCTCCCAGATCCAAAATGCCC	0.652000													13	20					0	0	0.000219431	0	0
OTOA	146183	broad.mit.edu	37	16	21734260	21734260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr16:21734260C>T	uc002djh.2	+	17	1842	c.1841C>T	c.(1840-1842)TCC>TTC	p.S614F	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.S535F|OTOA_uc002dji.2_Missense_Mutation_p.S290F|OTOA_uc010vbk.1_Missense_Mutation_p.S262F	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	628					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TGGGAAGTTTCCAGATTGTCT	0.408000													24	30					0	0	0.000147802	0	0
CALB2	794	broad.mit.edu	37	16	71406091	71406091	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr16:71406091T>G	uc002faa.3	+	2	200	c.130T>G	c.(130-132)TTT>GTT	p.F44V	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_Missense_Mutation_p.F44V	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	44	EF-hand 1.						calcium ion binding				0		Ovarian(137;0.125)				GCTAGAAAACTTTTTCCAAGA	0.463000													6	56					0	0	3.59834e-05	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77325337	77325337	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr16:77325337C>T	uc002ffc.3	-	21	3647	c.3228G>A	c.(3226-3228)GAG>GAA	p.E1076E		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1076	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGCACTTCATCTCCCTCTTCC	0.483000													81	63					0	0	0.000781405	0	0
SPNS2	124976	broad.mit.edu	37	17	4416546	4416547	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:4416546_4416547CC>TT	uc002fxx.2	+	2	589_590	c.375_376CC>TT	c.(373-378)GTCCTT>GTTTTT	p.L126F		NM_001124758	NP_001118230	Q8IVW8	SPNS2_HUMAN	spinster homolog 2	126					lipid transport|transmembrane transport	integral to membrane					0						CTCCAGGCGTCCTTCTGGACAT	0.673000													31	23					0	0	6.4e-05	0	0
TMEM95	339168	broad.mit.edu	37	17	7259218	7259218	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:7259218C>T	uc002ggh.1	+	3	315	c.288C>T	c.(286-288)CTC>CTT	p.L96L	TMEM95_uc002ggf.1_Silent_p.L96L|TMEM95_uc002ggg.1_Silent_p.L96L	NM_198154	NP_937797	Q3KNT9	TMM95_HUMAN	transmembrane protein 95	96	Extracellular (Potential).					integral to membrane					0		Prostate(122;0.173)				AGACCAAGCTCCCTGAGTACA	0.557000											OREG0024137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	19					0	0	0.000229342	0	0
TP53	7157	broad.mit.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:7577105G>A	uc002gim.2	-	8	1027	c.833C>T	c.(832-834)CCT>CTT	p.P278L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.P278L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P146L|TP53_uc010cng.1_Missense_Mutation_p.P146L|TP53_uc002gii.1_Missense_Mutation_p.P146L|TP53_uc010cnh.1_Missense_Mutation_p.P278L|TP53_uc010cni.1_Missense_Mutation_p.P278L|TP53_uc002gij.2_Missense_Mutation_p.P278L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	278	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		P -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|P -> S (in LFS; germline mutation and in sporadic cancers; somatic mutation).|P -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|P -> H (in sporadic cancers; somatic mutation).|P -> R (in sporadic cancers; somatic mutation).|P -> T (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.P278L(52)|p.P278S(48)|p.P278R(26)|p.P278T(21)|p.P278A(17)|p.P278H(11)|p.0?(7)|p.P278fs*67(5)|p.P278F(3)|p.P278fs*28(2)|p.?(2)|p.A276_R283delACPGRDRR(1)|p.A276fs*64(1)|p.V274_P278del(1)|p.P278P(1)|p.C277_P278insXXXXXXX(1)|p.F270_D281del12(1)|p.P278_G279insXXXXX(1)|p.C275_R283delCACPGRDRR(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.V272_K292del21(1)|p.C275fs*20(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GTCTCTCCCAGGACAGGCACA	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			15	6					0	0	0.000422831	0	0
CCDC144C	348254	broad.mit.edu	37	17	20224794	20224794	+	RNA	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:20224794A>G	uc010cqy.1	+	1		c.308A>G				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						GCTGGTGGAAAAACAGCGTCG	0.637000													4	43					0	0	0.00024832	0	0
KRT36	8689	broad.mit.edu	37	17	39643210	39643210	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:39643210C>T	uc002hwt.2	-	6	1200	c.1200G>A	c.(1198-1200)GAG>GAA	p.E400E		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	400	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				ACTTGCAGTCCTCTCCCTCCA	0.627000													13	14					0	0	0.00010058	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42275028	42275028	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:42275028C>A	uc002iga.2	-	2	213	c.122G>T	c.(121-123)CGG>CTG	p.R41L	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Missense_Mutation_p.R41L	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	41					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CTTGACAGCCCGGTGTACCTC	0.552000													44	34					2.55665e-31	4.54579e-30	0.000781405	1	0
IGF2BP1	10642	broad.mit.edu	37	17	47123728	47123728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:47123728C>T	uc002iom.2	+	14	1968	c.1634C>T	c.(1633-1635)GCC>GTC	p.A545V	IGF2BP1_uc010dbj.2_Missense_Mutation_p.A406V	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	545	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).|KH 4.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						CATTTCTATGCCAGTCAGGTA	0.522000													7	15					0	0	0.000157383	0	0
ITGA3	3675	broad.mit.edu	37	17	48145587	48145587	+	Silent	SNP	G	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:48145587G>C	uc010dbl.2	+	4	1046	c.582G>C	c.(580-582)ACG>ACC	p.T194T	ITGA3_uc010dbm.2_Silent_p.T194T	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	194	FG-GAP 3.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						ACCTGGAGACGGGCATGTGCC	0.592000													3	61					0	0	3.59834e-05	0	0
AKAP1	8165	broad.mit.edu	37	17	55183806	55183806	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:55183806T>G	uc002iux.2	+	2	1212	c.981T>G	c.(979-981)AAT>AAG	p.N327K	AKAP1_uc010wnl.1_Missense_Mutation_p.N327K|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Missense_Mutation_p.N327K	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	327					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					TGGATAGAAATGAGGAGAGCT	0.493000													56	52					0	0	0.000781405	0	0
SCN4A	6329	broad.mit.edu	37	17	62043901	62043901	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:62043901T>C	uc002jds.1	-	7	1117	c.1040A>G	c.(1039-1041)AAC>AGC	p.N347S		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	347	I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GAAGTAGAAGTTCCCTTTGGG	0.582000													9	5					0	0	0.000442599	0	0
ITGB4	3691	broad.mit.edu	37	17	73729654	73729654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:73729654C>T	uc002jpg.2	+	13	1725	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F	ITGB4_uc002jph.2_Missense_Mutation_p.S513F|ITGB4_uc010dgo.2_Missense_Mutation_p.S513F|ITGB4_uc002jpi.3_Missense_Mutation_p.S513F|ITGB4_uc010dgp.1_Missense_Mutation_p.S513F|ITGB4_uc002jpj.2_Missense_Mutation_p.S513F|ITGB4_uc010wsh.1_Missense_Mutation_p.S68F	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	513	II.|Extracellular (Potential).|Cysteine-rich tandem repeats.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AAGCCGTGCTCCGGCCGTGGG	0.637000													19	8					0	0	0.000375601	0	0
C17orf56	146705	broad.mit.edu	37	17	79205748	79205748	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:79205748G>A	uc002jzu.1	-	8	622	c.600C>T	c.(598-600)TCC>TCT	p.S200S	C17orf56_uc002jzr.1_5'Flank|C17orf56_uc002jzs.1_Silent_p.S116S|C17orf56_uc002jzt.1_Silent_p.S116S|C17orf56_uc002jzv.1_Silent_p.S48S|uc002jzw.1_RNA	NM_144679	NP_653280	Q96N21	CQ056_HUMAN	hypothetical protein LOC146705	200	Ser-rich.					integral to membrane					0	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			TGTTCTGGGAGGAATTCTGAG	0.657000													32	16					0	0	0.000270559	0	0
RAB40B	10966	broad.mit.edu	37	17	80616413	80616413	+	Silent	SNP	G	A	A	rs142445256	byFrequency	TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr17:80616413G>A	uc002kft.2	-	5	645	c.519C>T	c.(517-519)ATC>ATT	p.I173I	RAB40B_uc002kfs.2_RNA	NM_006822	NP_006813	Q12829	RB40B_HUMAN	RAB40B, member RAS oncogene family	173					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			central_nervous_system(1)	1	Breast(20;0.00132)|all_neural(118;0.0952)	all_cancers(8;0.072)|all_epithelial(8;0.139)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			GCAGCAGCACGATCCTGGCCA	0.657000													36	24					0	0	0.000589545	0	0
C18orf10	25941	broad.mit.edu	37	18	34385448	34385448	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr18:34385448C>G	uc002kzw.1	-	4	699	c.271G>C	c.(271-273)GGA>CGA	p.G91R	C18orf10_uc002kzv.1_Missense_Mutation_p.G91R|C18orf10_uc010xci.1_Intron|C18orf10_uc002kzx.1_Intron|C18orf10_uc002kzy.3_Missense_Mutation_p.G91R	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	91						cytoplasm|microtubule				skin(1)	1						GCCATGCTTCCCAGTGGAATG	0.453000													3	74					0	0	0.00024832	0	0
RAB27B	5874	broad.mit.edu	37	18	52556557	52556557	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr18:52556557G>A	uc002lfr.2	+	6	681	c.570G>A	c.(568-570)GAG>GAA	p.E190E		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	190					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		AGTGTGTGGAGAAGACACAAA	0.413000													11	14					0	0	0.00010058	0	0
SERPINB3	6317	broad.mit.edu	37	18	61323245	61323245	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr18:61323245C>T	uc002lji.2	-	8	963	c.819G>A	c.(817-819)CAG>CAA	p.Q273Q	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Silent_p.Q221Q	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	273					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CTCTCATATTCTGCAAACTTG	0.393000													24	22					0	0	0.000295444	0	0
C19orf29	58509	broad.mit.edu	37	19	3611986	3611986	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:3611986A>G	uc002lyh.2	-	10	2265	c.2212T>C	c.(2212-2214)TGC>CGC	p.C738R	C19orf29_uc010xho.1_Missense_Mutation_p.C197R|C19orf29_uc010dtn.2_Missense_Mutation_p.C586R|C19orf29_uc002lyi.3_Missense_Mutation_p.C738R|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	738						catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAAACTGGCAGCGGAAGCCG	0.637000													30	25					0	0	0.000279167	0	0
MUC16	94025	broad.mit.edu	37	19	9017365	9017365	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:9017365C>T	uc002mkp.2	-	26	38163	c.37959G>A	c.(37957-37959)AGG>AGA	p.R12653R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12655	SEA 4.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGACTGTTCCTGTCCAGGG	0.567000													55	79					0	0	0.000781405	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739366	15739366	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:15739366C>T	uc002nbi.2	+	13	1339	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	CYP4F8_uc010xoj.1_Silent_p.F237F	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	425					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						TCAACATCTTCGCAATCCATC	0.627000													8	152					0	0	6.40141e-05	0	0
PSG8	440533	broad.mit.edu	37	19	43258539	43258539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:43258539G>A	uc002ouo.2	-	5	1287	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Missense_Mutation_p.R236C|PSG8_uc002ouh.2_Missense_Mutation_p.R397C|PSG8_uc010ein.2_Missense_Mutation_p.R275C|PSG8_uc002ouj.3_Missense_Mutation_p.R179C|PSG8_uc002ouk.3_Missense_Mutation_p.R236C|PSG8_uc002oul.3_Missense_Mutation_p.R397C|PSG8_uc002oum.3_Missense_Mutation_p.R304C|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.R304C	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	397	Ig-like C2-type 3.					extracellular region					0		Prostate(69;0.00899)				GCTGAGTTACGAACAGAGCAA	0.448000													12	149					0	0	6.40141e-05	0	0
PSG8	440533	broad.mit.edu	37	19	43259372	43259372	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:43259372C>T	uc002ouo.2	-	4	854	c.756G>A	c.(754-756)AGG>AGA	p.R252R	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Silent_p.R91R|PSG8_uc002ouh.2_Silent_p.R252R|PSG8_uc010ein.2_Silent_p.R130R|PSG8_uc002ouj.3_Silent_p.R34R|PSG8_uc002ouk.3_Silent_p.R91R|PSG8_uc002oul.3_Silent_p.R252R|PSG8_uc002oum.3_Silent_p.R159R|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.R159R	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	252	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				CCTTATTCTCCCTGGGTTTTA	0.488000													11	163					0	0	6.40141e-05	0	0
PSG7	5676	broad.mit.edu	37	19	43433850	43433850	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:43433850G>A	uc002ovl.3	-	4	555	c.453C>T	c.(451-453)ATC>ATT	p.I151I	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_5'Flank|PSG7_uc002out.1_5'UTR|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.I29I	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	151	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TGCTGCTGGAGATGGAGGGTT	0.517000													59	37					0	0	0.000781405	0	0
KLK5	25818	broad.mit.edu	37	19	51452022	51452022	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr19:51452022G>A	uc002pue.2	-	6	818	c.600C>T	c.(598-600)TTC>TTT	p.F200F	KLK5_uc002puf.2_Silent_p.F200F|KLK5_uc002pug.2_Silent_p.F200F	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	200	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		GGACCTTAGGGAAGTGCACTG	0.517000													35	18					0	0	0.000270559	0	0
OTOF	9381	broad.mit.edu	37	2	26699021	26699021	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:26699021G>A	uc002rhk.2	-	23	2968	c.2841C>T	c.(2839-2841)TTC>TTT	p.F947F	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Silent_p.F200F|OTOF_uc002rhi.2_Silent_p.F257F|OTOF_uc002rhj.2_Silent_p.F200F	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	947	Cytoplasmic (Potential).|C2 3.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGACGGGTGGGAAGGCATGCA	0.667000													4	14					0	0	0.00024832	0	0
CCDC138	165055	broad.mit.edu	37	2	109489923	109489923	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:109489923C>T	uc002ten.1	+	14	1770	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	CCDC138_uc002teo.1_Intron|CCDC138_uc002tep.1_Silent_p.F254F|CCDC138_uc010fjm.1_Intron	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	570											0						TGCAGCCTTTCCTGGAAGCCT	0.363000													41	112					0	0	0.000680045	0	0
IL1F7	27178	broad.mit.edu	37	2	113675351	113675351	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:113675351G>A	uc002tij.2	+	4	447	c.405G>A	c.(403-405)CTG>CTA	p.L135L	IL1F7_uc002tik.2_Silent_p.L114L|IL1F7_uc002til.2_Silent_p.L95L|IL1F7_uc002tim.2_Silent_p.L74L|IL1F7_uc002tin.2_Silent_p.L109L	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	135					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						CCCTTCAGCTGAAGGTGAGAG	0.483000													46	53					0	0	0.000781405	0	0
TMEM177	80775	broad.mit.edu	37	2	120438600	120438600	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:120438600C>T	uc010flg.1	+	2	644	c.171C>T	c.(169-171)CTC>CTT	p.L57L	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Silent_p.L57L|TMEM177_uc002tmd.2_Silent_p.L57L|TMEM177_uc010flh.2_Silent_p.L57L	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	57						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					CAGCTCCGCTCCCTCCACAGC	0.582000													45	97					0	0	0.000680045	0	0
TMEM163	81615	broad.mit.edu	37	2	135260541	135260541	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:135260541G>A	uc002ttx.2	-	5	552	c.486C>T	c.(484-486)TTC>TTT	p.F162F	TMEM163_uc002tty.2_Intron	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	162	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		ATGACAGAAGGAATATCACCC	0.438000													7	13					0	0	0.000274275	0	0
LRP1B	53353	broad.mit.edu	37	2	141299473	141299473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:141299473G>A	uc002tvj.1	-	44	8234	c.7262C>T	c.(7261-7263)TCG>TTG	p.S2421L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2421	Extracellular (Potential).|LDL-receptor class B 27.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCCCCAGTCCGACCAGAATAT	0.383000										TSP Lung(27;0.18)			17	24					0	0	0.00074312	0	0
OSBPL6	114880	broad.mit.edu	37	2	179255918	179255919	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:179255918_179255919CC>TT	uc002ulx.2	+	22	2798_2799	c.2420_2421CC>TT	c.(2419-2421)CCC>CTT	p.P807L	OSBPL6_uc002uly.2_Missense_Mutation_p.P832L|OSBPL6_uc010zfe.1_Missense_Mutation_p.P776L|OSBPL6_uc002ulz.2_Missense_Mutation_p.P771L|OSBPL6_uc002uma.2_Missense_Mutation_p.P811L	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	807					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GGTGTGGCCCCCTCTGCAAAGT	0.535000													46	72					0	0	6.4e-05	0	0
CCDC141	285025	broad.mit.edu	37	2	179730496	179730496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:179730496C>T	uc002unf.1	-	7	1054	c.997G>A	c.(997-999)GAG>AAG	p.E333K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	333	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			ACACCCACCTCATTTATCTCG	0.522000													92	194					0	0	0.000781405	0	0
WDR75	84128	broad.mit.edu	37	2	190338913	190338913	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:190338913T>A	uc002uql.1	+	19	2111	c.2051T>A	c.(2050-2052)CTG>CAG	p.L684Q	WDR75_uc002uqm.1_Missense_Mutation_p.L620Q|WDR75_uc002uqn.1_Missense_Mutation_p.L462Q|WDR75_uc002uqo.1_Missense_Mutation_p.L462Q	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	684						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			TCCTTAAAGCTGCTAGCAGAA	0.303000													44	92					0	0	0.000781405	0	0
SATB2	23314	broad.mit.edu	37	2	200136952	200136952	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:200136952G>A	uc002uuy.1	-	11	3001	c.2184C>T	c.(2182-2184)GCC>GCT	p.A728A	SATB2_uc010fsq.1_Silent_p.A610A|SATB2_uc002uuz.1_Silent_p.A728A|SATB2_uc002uva.1_Silent_p.A728A	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	728						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTCAATTTCGGCAGGTGCTG	0.428000													56	86					0	0	0.000781405	0	0
PARD3B	117583	broad.mit.edu	37	2	206166306	206166306	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:206166306G>A	uc002var.1	+	18	2718	c.2511G>A	c.(2509-2511)ACG>ACA	p.T837T	PARD3B_uc010fub.1_Silent_p.T837T|PARD3B_uc002vao.1_Silent_p.T837T|PARD3B_uc002vap.1_Silent_p.T775T|PARD3B_uc002vaq.1_Silent_p.T768T	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	837	Lys-rich.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TCAAAAAAACgaaagagaagg	0.244000													30	48					0	0	0.000227799	0	0
ERBB4	2066	broad.mit.edu	37	2	212289026	212289026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:212289026C>T	uc002veg.1	-	23	2818	c.2720G>A	c.(2719-2721)GGA>GAA	p.G907E	ERBB4_uc002veh.1_Missense_Mutation_p.G907E|ERBB4_uc010zji.1_Missense_Mutation_p.G897E|ERBB4_uc010zjj.1_Missense_Mutation_p.G897E	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	907	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TATAGTAACTCCTATATTGGA	0.363000										TSP Lung(8;0.080)			5	16					0	0	0.000602214	0	0
SPAG16	79582	broad.mit.edu	37	2	215274924	215274924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:215274924G>A	uc002veq.2	+	16	1873	c.1781G>A	c.(1780-1782)GGG>GAG	p.G594E	SPAG16_uc002ver.2_Missense_Mutation_p.G540E|SPAG16_uc010zjk.1_Missense_Mutation_p.G500E|VWC2L_uc002vet.2_5'Flank|VWC2L_uc010zjl.1_5'Flank	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	594	WD 6.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CTTAAATCTGGGGAGATTCAC	0.478000													37	66					0	0	0.000270559	0	0
FBXO36	130888	broad.mit.edu	37	2	230875560	230875560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:230875560G>A	uc002vqa.2	+	4	550	c.527G>A	c.(526-528)AGG>AAG	p.R176K	FBXO36_uc002vqb.2_Missense_Mutation_p.R145K|FBXO36_uc010fxi.1_Intron|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	176										ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		CTCCGCAAGAGGAAACAAAAA	0.537000													8	19					0	0	0.000274275	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910504	230910504	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:230910504G>A	uc002vqd.1	-	4	1701	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.I446I|SLC16A14_uc002vqf.2_Silent_p.I446I	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	446	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CATTAGCACAGATGATGATGC	0.473000													19	35					0	0	0.000295444	0	0
COL6A3	1293	broad.mit.edu	37	2	238280589	238280589	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr2:238280589C>T	uc002vwl.2	-	9	4356	c.4071G>A	c.(4069-4071)GTG>GTA	p.V1357V	COL6A3_uc002vwo.2_Silent_p.V1151V|COL6A3_uc010znj.1_Silent_p.V750V|COL6A3_uc002vwq.2_Silent_p.V1151V|COL6A3_uc002vwr.2_Silent_p.V950V	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1357	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity	p.V1357L(1)		ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GCTTGAGCTCCACCGCCGGGT	0.612000													13	29					0	0	0.000151284	0	0
CHMP4B	128866	broad.mit.edu	37	20	32436417	32436418	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr20:32436417_32436418CC>TT	uc002xaa.2	+	2	491_492	c.335_336CC>TT	c.(334-336)GCC>GTT	p.A112V		NM_176812	NP_789782	Q9H444	CHM4B_HUMAN	chromatin modifying protein 4B	112	Potential.				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(1)|central_nervous_system(1)	2						ATGGGCTATGCCGCCAAGGCCA	0.614000													13	35					0	0	6.4e-05	0	0
CASS4	57091	broad.mit.edu	37	20	55012536	55012536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr20:55012536G>A	uc002xxp.2	+	3	578	c.353G>A	c.(352-354)AGT>AAT	p.S118N	CASS4_uc002xxq.3_Missense_Mutation_p.S118N|CASS4_uc002xxr.2_Missense_Mutation_p.S118N|CASS4_uc010zze.1_Intron|CASS4_uc010gio.2_Missense_Mutation_p.S118N	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	118					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CAGATGAGGAGTTGGGCGGAG	0.597000													28	51					0	0	0.000339439	0	0
EDN3	1908	broad.mit.edu	37	20	57876575	57876575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr20:57876575G>A	uc002yap.2	+	2	532	c.163G>A	c.(163-165)GAG>AAG	p.E55K	EDN3_uc002yao.1_Missense_Mutation_p.E55K|EDN3_uc002yaq.2_Missense_Mutation_p.E55K|EDN3_uc002yar.2_Missense_Mutation_p.E55K|EDN3_uc002yas.2_Missense_Mutation_p.E55K	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	55					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					TGGCCCTGGCGAGGAGACTGT	0.706000													9	12					0	0	0.000442599	0	0
DNAJC5	80331	broad.mit.edu	37	20	62560693	62560693	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr20:62560693A>T	uc002yhf.2	+	3	306	c.136A>T	c.(136-138)AAG>TAG	p.K46*	DNAJC5_uc002yhg.1_Nonsense_Mutation_p.K46*|DNAJC5_uc002yhh.2_RNA	NM_025219	NP_079495	Q9H3Z4	DNJC5_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	46	J.				neurotransmitter secretion|protein folding	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|melanosome|plasma membrane	heat shock protein binding|unfolded protein binding			pancreas(1)	1	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					TCACCCCGACAAGAACCCCGA	0.567000													8	19					0	0	0.000442599	0	0
MYO18B	84700	broad.mit.edu	37	22	26228956	26228956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr22:26228956C>T	uc003abz.1	+	16	3302	c.3052C>T	c.(3052-3054)CCC>TCC	p.P1018S	MYO18B_uc003aca.1_Missense_Mutation_p.P899S|MYO18B_uc010guy.1_Missense_Mutation_p.P899S|MYO18B_uc010guz.1_Missense_Mutation_p.P899S|MYO18B_uc011aka.1_Missense_Mutation_p.P172S|MYO18B_uc011akb.1_Missense_Mutation_p.P531S	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1018	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGATCAAAATCCCTCTCAGGT	0.488000													14	46					0	0	0.000422831	0	0
IL2RB	3560	broad.mit.edu	37	22	37528505	37528505	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr22:37528505C>T	uc003aqv.1	-	9	953	c.822G>A	c.(820-822)CTG>CTA	p.L274L		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	274	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GGACCTTCTTCAGCCTGGACA	0.617000													9	17					0	0	0.000442599	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37964165	37964165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr22:37964165C>T	uc003asz.3	+	3	917	c.514C>T	c.(514-516)CCG>TCG	p.P172S		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	172					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CTCGGAAAAGCCGCATGACCG	0.642000													23	65					0	0	0.00047179	0	0
TRIOBP	11078	broad.mit.edu	37	22	38154108	38154108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr22:38154108G>A	uc003atr.2	+	16	6447	c.6176G>A	c.(6175-6177)GGG>GAG	p.G2059E	TRIOBP_uc003atu.2_Missense_Mutation_p.G1887E|TRIOBP_uc003atv.2_Missense_Mutation_p.G346E|TRIOBP_uc003atw.2_Missense_Mutation_p.G346E|TRIOBP_uc003atx.1_5'UTR|TRIOBP_uc010gxh.2_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	2059					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAGCGCCGAGGGCCCCCAAGT	0.662000													12	10					0	0	0.00074312	0	0
FANCD2	2177	broad.mit.edu	37	3	10089677	10089677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:10089677C>T	uc003buw.2	+	16	1433	c.1355C>T	c.(1354-1356)TCA>TTA	p.S452L	FANCD2_uc003bux.1_Missense_Mutation_p.S452L|FANCD2_uc003buy.1_Missense_Mutation_p.S452L|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	452					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		AGTATAATTTCATTTGGCAGT	0.403000			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				43	180					0	0	0.000589545	0	0
TRANK1	9881	broad.mit.edu	37	3	36873966	36873966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:36873966C>T	uc003cgj.2	-	12	5628	c.5326G>A	c.(5326-5328)GAT>AAT	p.D1776N		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2326	Potential.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCCCTTTCATCCTTTTCAGAC	0.488000													29	128					0	0	0.00058488	0	0
SLC22A14	9389	broad.mit.edu	37	3	38350536	38350536	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:38350536C>T	uc010hhc.1	+	5	909	c.867C>T	c.(865-867)ATC>ATT	p.I289I	SLC22A14_uc003cib.2_Silent_p.I289I|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	289	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		TGACAGGGATCGCCTACAGTC	0.567000													27	106					0	0	0.000279167	0	0
LZTFL1	54585	broad.mit.edu	37	3	45875784	45875784	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:45875784T>A	uc003cox.1	-	4	468	c.330A>T	c.(328-330)TTA>TTT	p.L110F	LZTFL1_uc003coy.1_Missense_Mutation_p.L93F|LZTFL1_uc011bak.1_RNA	NM_020347	NP_065080	Q9NQ48	LZTL1_HUMAN	leucine zipper transcription factor-like 1	110	Potential.										0				BRCA - Breast invasive adenocarcinoma(193;0.00867)|KIRC - Kidney renal clear cell carcinoma(197;0.0177)|Kidney(197;0.0208)		CTTGTTCTAATAATTCTCTTG	0.284000													10	31					0	0	0.000673444	0	0
CCR3	1232	broad.mit.edu	37	3	46306838	46306838	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:46306838G>A	uc003cpg.1	+	4	732	c.189G>A	c.(187-189)AGG>AGA	p.R63R	CCR3_uc003cpi.1_Silent_p.R63R|CCR3_uc003cpj.1_Silent_p.R63R|CCR3_uc003cpk.1_Silent_p.R84R|CCR3_uc010hjb.1_Silent_p.R81R|CCR3_uc003cpl.1_Silent_p.R96R	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	63	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		TAAAATACAGGAGGCTCCGAA	0.547000													26	47					0	0	0.000720815	0	0
PRSS42	339906	broad.mit.edu	37	3	46874471	46874472	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:46874471_46874472CC>TT	uc011bap.1	-	3	596_597	c.596_597GG>AA	c.(595-597)AGG>AAA	p.R199K	PRSS42_uc003cqj.2_Intron	NM_182702	NP_874361	Q7Z5A4	PRS42_HUMAN	testis serine protease 2 precursor	199	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			pancreas(1)	1						TCACCCAGCACCTGGTCCTACC	0.540000													29	49					0	0	6.4e-05	0	0
PLXNB1	5364	broad.mit.edu	37	3	48464220	48464220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:48464220C>T	uc003csw.2	-	4	1514	c.1244G>A	c.(1243-1245)GGA>GAA	p.G415E	PLXNB1_uc003csu.2_Missense_Mutation_p.G415E|PLXNB1_uc003csx.2_Missense_Mutation_p.G415E|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	415	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GATGGTGTGTCCATCTTCCAT	0.607000													20	37					0	0	0.000229342	0	0
WDR82	80335	broad.mit.edu	37	3	52293245	52293245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:52293245G>A	uc003ddl.2	-	7	1019	c.737C>T	c.(736-738)TCA>TTA	p.S246L	WDR82_uc003ddk.2_Missense_Mutation_p.S171L	NM_025222	NP_079498	Q6UXN9	WDR82_HUMAN	WD repeat domain 82	246	WD 5.				histone H3-K4 methylation	chromatin|PTW/PP1 phosphatase complex|Set1C/COMPASS complex	protein binding				0				BRCA - Breast invasive adenocarcinoma(193;2.67e-05)|Kidney(197;0.00198)|KIRC - Kidney renal clear cell carcinoma(197;0.00223)|OV - Ovarian serous cystadenocarcinoma(275;0.246)		TGGAGTAAATGAAGCCTCCAG	0.378000													34	66					0	0	0.000374591	0	0
CACNA1D	776	broad.mit.edu	37	3	53785881	53785881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:53785881G>A	uc003dgv.3	+	28	3785	c.3622G>A	c.(3622-3624)GAA>AAA	p.E1208K	CACNA1D_uc003dgu.3_Missense_Mutation_p.E1228K|CACNA1D_uc003dgy.3_Missense_Mutation_p.E1208K|CACNA1D_uc003dgw.3_Missense_Mutation_p.E875K|CACNA1D_uc003dgx.1_Missense_Mutation_p.E356K	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1208	IV.|Helical; Name=S1 of repeat IV; (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TTCGCCTTTCGAATACATGAT	0.507000													88	148					0	0	0.000781405	0	0
FLNB	2317	broad.mit.edu	37	3	58084469	58084469	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:58084469G>A	uc003djj.2	+	8	1344	c.1179G>A	c.(1177-1179)GTG>GTA	p.V393V	FLNB_uc010hne.2_Silent_p.V393V|FLNB_uc003djk.2_Silent_p.V393V|FLNB_uc010hnf.2_Silent_p.V393V|FLNB_uc003djl.2_Silent_p.V224V|FLNB_uc003djm.2_Silent_p.V224V	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	393	Filamin 2.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GTGTGGAGGTGGAAGATCCCC	0.537000													20	39					0	0	0.000175454	0	0
PXK	54899	broad.mit.edu	37	3	58398679	58398679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:58398679C>T	uc003djz.1	+	17	1616	c.1517C>T	c.(1516-1518)CCC>CTC	p.P506L	PXK_uc003djx.1_Missense_Mutation_p.P506L|PXK_uc003djy.1_Missense_Mutation_p.P489L|PXK_uc003dka.1_Missense_Mutation_p.P506L|PXK_uc003dkb.1_Missense_Mutation_p.P423L|PXK_uc003dkc.1_Missense_Mutation_p.P488L|PXK_uc011bfe.1_Missense_Mutation_p.P473L|PXK_uc010hnj.1_Missense_Mutation_p.P473L|PXK_uc003dkd.1_Missense_Mutation_p.P369L|PXK_uc010hnk.1_Missense_Mutation_p.P280L	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	506					cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		CCAACTCCACCCTCTACATCA	0.537000													45	79					0	0	0.000781405	0	0
ATXN7	6314	broad.mit.edu	37	3	63975923	63975923	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:63975923A>C	uc003dlw.3	+	10	1986	c.1433A>C	c.(1432-1434)CAC>CCC	p.H478P	ATXN7_uc003dlv.2_Missense_Mutation_p.H478P|ATXN7_uc010hnv.2_Missense_Mutation_p.H478P|ATXN7_uc011bfn.1_Missense_Mutation_p.H333P	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	478	Pro-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		GAATCTCCACACCCTCCCCTG	0.562000													7	39					0	0	0.000308642	0	0
OR5H1	26341	broad.mit.edu	37	3	97851871	97851871	+	Silent	SNP	G	A	A	rs113686881		TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:97851871G>A	uc011bgt.1	+	1	330	c.330G>A	c.(328-330)ACG>ACA	p.T110T		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GTGTAACCACGGAATGTTTTC	0.408000													66	98					0	0	0.000781405	0	0
PHLDB2	90102	broad.mit.edu	37	3	111664167	111664167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:111664167G>A	uc010hqa.2	+	9	2861	c.2450G>A	c.(2449-2451)GGG>GAG	p.G817E	PHLDB2_uc003dyc.2_Missense_Mutation_p.G801E|PHLDB2_uc003dyd.2_Missense_Mutation_p.G774E|PHLDB2_uc003dyg.2_Missense_Mutation_p.G817E|PHLDB2_uc003dyh.2_Missense_Mutation_p.G774E|PHLDB2_uc003dyi.2_Missense_Mutation_p.G403E	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	817						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						CTCTCTGGGGGGAAAGGGTTT	0.373000													36	56					0	0	0.000270559	0	0
PCCB	5096	broad.mit.edu	37	3	136019900	136019900	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:136019900A>G	uc003eqy.1	+	9	964	c.913A>G	c.(913-915)ATT>GTT	p.I305V	PCCB_uc003eqz.1_Missense_Mutation_p.I305V|PCCB_uc011bmc.1_Missense_Mutation_p.I325V|PCCB_uc011bmd.1_Missense_Mutation_p.I222V	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	305	Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	GCTTGACACAATTGTCCCTTT	0.468000													28	27					0	0	0.000279167	0	0
TFDP2	7029	broad.mit.edu	37	3	141671826	141671827	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr3:141671826_141671827CC>AA	uc003eun.3	-	12	1462_1463	c.1083_1084GG>TT	c.(1081-1086)CAGGGA>CATTGA	p.361_362QG>H*	TFDP2_uc003euk.3_Nonsense_Mutation_p.274_275QG>H*|TFDP2_uc010hur.2_Nonsense_Mutation_p.301_302QG>H*|TFDP2_uc003eul.3_Nonsense_Mutation_p.301_302QG>H*|TFDP2_uc011bnf.1_Nonsense_Mutation_p.264_265QG>H*|TFDP2_uc011bng.1_Nonsense_Mutation_p.225_226QG>H*|TFDP2_uc003eum.3_Nonsense_Mutation_p.301_302QG>H*	NM_006286	NP_006277	Q14188	TFDP2_HUMAN	transcription factor Dp-2 (E2F dimerization	361_362					cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|transcription factor binding			kidney(1)	1						AGAAGTAGTCCCTGATTTAACC	0.421000													6	72					0	0	6.4e-05	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435740	7435740	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:7435740C>T	uc011bwj.1	-	1	961	c.867G>A	c.(865-867)AAG>AAA	p.K289K	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	289					sphingolipid metabolic process	extracellular region|lysosome					0						TCACACCGGCCTTCATCTGCA	0.597000													20	28					0	0	0.000958276	0	0
SLIT2	9353	broad.mit.edu	37	4	20591354	20591354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:20591354G>A	uc003gpr.1	+	30	3380	c.3176G>A	c.(3175-3177)GGA>GAA	p.G1059E	SLIT2_uc003gps.1_Missense_Mutation_p.G1051E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1059	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						ACTCCAAAGGGATTCAAGTAA	0.502000													16	41					0	0	0.000566183	0	0
CORIN	10699	broad.mit.edu	37	4	47788900	47788900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:47788900G>A	uc003gxm.2	-	3	344	c.251C>T	c.(250-252)CCT>CTT	p.P84L	CORIN_uc011bzf.1_5'UTR|CORIN_uc011bzg.1_Intron|CORIN_uc011bzh.1_Missense_Mutation_p.P84L|CORIN_uc011bzi.1_Missense_Mutation_p.P84L|CORIN_uc003gxn.3_Missense_Mutation_p.P84L	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	84	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						AGTGACCAAAGGTTCACTCCC	0.363000													13	35					0	0	0.000151284	0	0
TEC	7006	broad.mit.edu	37	4	48169925	48169925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:48169925C>T	uc003gxz.2	-	7	632	c.541G>A	c.(541-543)GAA>AAA	p.E181K		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	181	SH3.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						ACGATTTCTTCACTATTATCT	0.383000													31	64					0	0	0.000491102	0	0
KDR	3791	broad.mit.edu	37	4	55955863	55955863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:55955863G>A	uc003has.2	-	24	3601	c.3299C>T	c.(3298-3300)TCC>TTC	p.S1100F	KDR_uc003hat.1_Missense_Mutation_p.S1100F	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1100	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTTACCTAAGGAAAATATTTC	0.413000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			58	114					0	0	0.000781405	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146681	70146681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:70146681C>T	uc003hej.2	+	1	465	c.463C>T	c.(463-465)CCT>TCT	p.P155S	UGT2B28_uc010ihr.2_Missense_Mutation_p.P155S	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	155					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TGCTTTTTTTCCTTGTGGTGA	0.383000													29	72					0	0	0.000339439	0	0
C4orf37	285555	broad.mit.edu	37	4	98762046	98762046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:98762046G>A	uc003htt.1	-	9	1172	c.1082C>T	c.(1081-1083)TCA>TTA	p.S361L		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	361											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		CATCTCATATGATTTGTGAAC	0.358000													35	34					0	0	0.000191422	0	0
GSTCD	79807	broad.mit.edu	37	4	106755698	106755698	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:106755698C>T	uc003hxz.3	+	9	1683	c.1611C>T	c.(1609-1611)TGC>TGT	p.C537C	GSTCD_uc003hxy.3_Silent_p.C450C|GSTCD_uc011cfb.1_Silent_p.C160C	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	537						cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		TCGTCACATGCCCTTGCTGTT	0.428000													43	73					0	0	0.000589545	0	0
GSTCD	79807	broad.mit.edu	37	4	106766726	106766726	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:106766726C>G	uc003hxz.3	+	12	1966	c.1894C>G	c.(1894-1896)CCC>GCC	p.P632A	GSTCD_uc003hxy.3_Missense_Mutation_p.P545A|GSTCD_uc011cfb.1_Missense_Mutation_p.P255A	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	632						cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		TGTGGGAGTCCCCATTTAAAA	0.453000													17	28					0	0	0.000132079	0	0
ANKRD50	57182	broad.mit.edu	37	4	125593615	125593615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:125593615G>A	uc003ifg.3	-	3	1083	c.817C>T	c.(817-819)CGT>TGT	p.R273C	ANKRD50_uc011cgo.1_Missense_Mutation_p.R94C|ANKRD50_uc010inw.2_Missense_Mutation_p.R273C	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	273										central_nervous_system(1)	1						TGATCTAAACGATGAAGAATG	0.363000													14	13					0	0	0.000219431	0	0
FAM149A	25854	broad.mit.edu	37	4	187088408	187088408	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr4:187088408T>A	uc003iyt.3	+	13	1946	c.1367T>A	c.(1366-1368)ATT>AAT	p.I456N	FAM149A_uc011cla.1_Missense_Mutation_p.I456N|FAM149A_uc003iyu.3_Missense_Mutation_p.I456N|FAM149A_uc010isl.2_Missense_Mutation_p.I456N|FAM149A_uc011clb.1_Missense_Mutation_p.I455N	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	747										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		GGTCAAAGTATTTTGACAGGT	0.378000													52	98					0	0	0.000781405	0	0
TERT	7015	broad.mit.edu	37	5	1272354	1272354	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:1272354G>A	uc003jcb.1	-	7	2386	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Silent_p.F764F|TERT_uc003jcc.1_Silent_p.F776F|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	776	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGTGAGCCACGAACTGTCGCA	0.657000									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				8	12					0	0	0.000442599	0	0
SEMA5A	9037	broad.mit.edu	37	5	9119117	9119117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:9119117C>T	uc003jek.2	-	15	2630	c.1918G>A	c.(1918-1920)GAG>AAG	p.E640K		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	640	TSP type-1 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TACCTTTCCTCGCGGTTCTGT	0.652000													12	32					0	0	0.000422831	0	0
DNAH5	1767	broad.mit.edu	37	5	13754372	13754372	+	Missense_Mutation	SNP	C	T	T	rs148592658		TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:13754372C>T	uc003jfd.2	-	62	10537	c.10495G>A	c.(10495-10497)GAA>AAA	p.E3499K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3499					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.E3499K(1)		ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTCTTTTTCACCTGCCAAG	0.413000									Kartagener_syndrome				43	70					0	0	0.000781405	0	0
CDH10	1008	broad.mit.edu	37	5	24491716	24491716	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:24491716G>A	uc003jgr.1	-	11	2177	c.1845C>T	c.(1843-1845)ATC>ATT	p.I615I	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	615	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GGAGGATGGCGATCAAGGCCC	0.493000										HNSCC(23;0.051)			28	63					0	0	0.000339439	0	0
CDH10	1008	broad.mit.edu	37	5	24509771	24509771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:24509771G>A	uc003jgr.1	-	7	1492	c.1160C>T	c.(1159-1161)TCC>TTC	p.S387F	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	387	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CAGATAGGAGGACCTACTAAA	0.393000										HNSCC(23;0.051)			20	34					0	0	0.000229342	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576572	33576572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:33576572C>T	uc003jia.1	-	19	3722	c.3559G>A	c.(3559-3561)GCT>ACT	p.A1187T	ADAMTS12_uc010iuq.1_Missense_Mutation_p.A1102T	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1187	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TCCACTGGAGCGTCATTTCCA	0.498000										HNSCC(64;0.19)			43	96					0	0	0.000781405	0	0
EGFLAM	133584	broad.mit.edu	37	5	38407088	38407088	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:38407088G>A	uc003jlc.1	+	8	1311	c.987G>A	c.(985-987)CAG>CAA	p.Q329Q	EGFLAM_uc003jlb.1_Silent_p.Q329Q|EGFLAM_uc003jle.1_Silent_p.Q95Q|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	329						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TTCCCATACAGAGAAAGGGGA	0.498000													25	45					0	0	0.000720815	0	0
C6	729	broad.mit.edu	37	5	41149459	41149459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:41149459G>A	uc003jmk.2	-	17	2717	c.2507C>T	c.(2506-2508)TCC>TTC	p.S836F	C6_uc003jml.1_Missense_Mutation_p.S836F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	836	C5b-binding domain.|Complement control factor I module 1.|Kazal-like 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GTCTTGGCAGGAACCAATATG	0.423000													57	89					0	0	0.000781405	0	0
PLK2	10769	broad.mit.edu	37	5	57751514	57751514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:57751514G>A	uc003jrn.2	-	11	1604	c.1477C>T	c.(1477-1479)CCC>TCC	p.P493S		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	493					positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		TGCTCTTTGGGAATGCAATCA	0.498000													6	18					0	0	8.12818e-05	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101595985	101595985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:101595985G>A	uc003knm.2	-	6	1347	c.1060C>T	c.(1060-1062)CAT>TAT	p.H354Y		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	354	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TTACTCTGATGAGCCTGGGAA	0.249000													5	21					0	0	8.12818e-05	0	0
CAMK4	814	broad.mit.edu	37	5	110820041	110820041	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:110820041G>A	uc011cvj.1	+	12	1398	c.1299G>A	c.(1297-1299)GAG>GAA	p.E433E	CAMK4_uc003kpf.2_Silent_p.E433E|CAMK4_uc010jbv.2_Silent_p.E236E|CAMK4_uc003kpg.2_Silent_p.E124E	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	433					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		TGGAACTAGAGGAGGGCCTAG	0.527000													16	15					0	0	0.000308642	0	0
TRIM36	55521	broad.mit.edu	37	5	114473250	114473250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:114473250C>T	uc003kqs.2	-	6	1440	c.931G>A	c.(931-933)GAA>AAA	p.E311K	TRIM36_uc011cwc.1_Missense_Mutation_p.E299K|TRIM36_uc003kqt.2_Missense_Mutation_p.E156K	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	311	Potential.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		TTCCTCTCTTCCAGAACTTCA	0.348000													58	47					0	0	0.000781405	0	0
CXCL14	9547	broad.mit.edu	37	5	134914211	134914211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:134914211G>A	uc003lay.2	-	2	584	c.119C>T	c.(118-120)TCC>TTC	p.S40F		NM_004887	NP_004878	O95715	CXL14_HUMAN	small inducible cytokine B14 precursor	40					cell-cell signaling|chemotaxis|immune response|signal transduction	extracellular space|Golgi apparatus	chemokine activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCCCTTCCGGGAGCACTTGCA	0.602000													30	21					0	0	0.000491102	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515462	140515462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr5:140515462G>A	uc003liq.2	+	1	663	c.446G>A	c.(445-447)GGG>GAG	p.G149E		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	149	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCCAGCCAGGGACTGTGTTT	0.443000													35	21					0	0	0.000191422	0	0
TRIM10	10107	broad.mit.edu	37	6	30128513	30128513	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:30128513G>A	uc003npo.3	-	1	199	c.123C>T	c.(121-123)ACC>ACT	p.T41T	TRIM10_uc003npn.2_Silent_p.T41T|TRIM15_uc010jrx.2_5'Flank	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	41	RING-type.					cytoplasm	zinc ion binding				0						CACAGTAGCGGGTAAGGCAGG	0.622000													52	83					0	0	0.000781405	0	0
MDC1	9656	broad.mit.edu	37	6	30670547	30670548	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:30670547_30670548CC>AA	uc003nrg.3	-	13	6412_6413	c.5972_5973GG>TT	c.(5971-5973)CGG>CTT	p.R1991L	MDC1_uc003nrf.3_Missense_Mutation_p.R622L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1991	Required for nuclear localization (NLS2).|BRCT 2.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GCCTTCGCTCCCGAGCCCTGCT	0.510000								Other_conserved_DNA_damage_response_genes					8	157					0	0	6.4e-05	0	0
VARS	7407	broad.mit.edu	37	6	31752241	31752241	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:31752241G>A	uc003nxe.2	-	12	1929	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	502					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	AGCCAGGCACGGAGAGCAGGG	0.602000													164	339					0	0	0.000781405	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188953	32188953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:32188953C>T	uc003obb.2	-	4	740	c.601G>A	c.(601-603)GAC>AAC	p.D201N	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.D201N	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	201	EGF-like 5; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGTCCTGGGTCCTGGAAGCAC	0.642000													137	223					0	0	0.000781405	0	0
ANKS1A	23294	broad.mit.edu	37	6	34985594	34985594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:34985594C>T	uc003ojx.3	+	11	1910	c.1768C>T	c.(1768-1770)CCG>TCG	p.P590S	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.P130S|ANKS1A_uc010jvp.1_Intron	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	590						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CACAGCATCTCCGCACCCTGG	0.622000													47	42					0	0	0.000781405	0	0
C6orf81	221481	broad.mit.edu	37	6	35715185	35715185	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:35715185C>T	uc003ola.2	+	4	700	c.673C>T	c.(673-675)CTG>TTG	p.L225L	C6orf81_uc003olb.1_Silent_p.L198L	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	198	ARM 2.						binding			ovary(1)	1						GATGGAGATCCTGCAGTCAGA	0.592000													21	19					0	0	0.000375601	0	0
SMAP1	60682	broad.mit.edu	37	6	71562272	71562272	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:71562272G>C	uc003pfr.2	+	8	942	c.694G>C	c.(694-696)GGG>CGG	p.G232R	SMAP1_uc003pfs.2_Missense_Mutation_p.G205R|SMAP1_uc010kao.2_Missense_Mutation_p.G205R|SMAP1_uc010kap.2_Missense_Mutation_p.G222R	NM_001044305	NP_001037770	Q8IYB5	SMAP1_HUMAN	stromal membrane-associated GTPase-activating	232					regulation of ARF GTPase activity	plasma membrane	ARF GTPase activator activity|zinc ion binding				0						AGTGACCAACGGGAACACAAC	0.443000													3	56					0	0	6.4e-05	0	0
MCHR2	84539	broad.mit.edu	37	6	100369011	100369011	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:100369011C>T	uc003pqh.1	-	6	1143	c.828G>A	c.(826-828)CAG>CAA	p.Q276Q	MCHR2_uc003pqi.1_Silent_p.Q276Q	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	276	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		GCTGTTCCATCTGTAAGTTCA	0.473000													5	41					0	0	0.000602214	0	0
ENPP3	5169	broad.mit.edu	37	6	132006568	132006568	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:132006568C>T	uc003qcu.3	+	14	1532	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Silent_p.F395F	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	395	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		GAATAAACTTCTTCTACATGT	0.363000													96	71					0	0	0.000781405	0	0
RMND1	55005	broad.mit.edu	37	6	151766442	151766442	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:151766442C>T	uc003qoi.2	-	2	684	c.504_splice	c.e2+1	p.E168_splice	RMND1_uc011eeq.1_5'Flank|RMND1_uc003qoj.2_Intron|RMND1_uc011eer.1_Intron	NM_017909	NP_060379	Q9NWS8	RMND1_HUMAN	required for meiotic nuclear division 1 homolog												0		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.146)	OV - Ovarian serous cystadenocarcinoma(155;6.8e-11)		CCCTACTTTACCTCGTTCACA	0.517000													13	14					0	0	0.000308642	0	0
C7orf27	221927	broad.mit.edu	37	7	2587019	2587019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:2587019G>A	uc003smi.2	-	3	263	c.221C>T	c.(220-222)TCC>TTC	p.S74F	C7orf27_uc003smj.1_Missense_Mutation_p.S74F	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	74					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		CAGTGAGAAGGAGAGGACCCC	0.617000													14	19					0	0	0.000151284	0	0
SDK1	221935	broad.mit.edu	37	7	4116640	4116640	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:4116640C>T	uc003smx.2	+	21	3160	c.3021C>T	c.(3019-3021)ATC>ATT	p.I1007I	SDK1_uc010kso.2_Silent_p.I283I	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1007	Fibronectin type-III 4.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCTATCAGATCTCTTGGGAAG	0.552000													5	17					0	0	0.000602214	0	0
DGKB	1607	broad.mit.edu	37	7	14613968	14613968	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:14613968G>A	uc003ssz.2	-	19	1829	c.1642C>T	c.(1642-1644)CTA>TTA	p.L548L	DGKB_uc011jxt.1_Silent_p.L529L|DGKB_uc003sta.2_Silent_p.L548L|DGKB_uc011jxu.1_Silent_p.L547L	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	548	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	ATGTCTTTTAGAATTTTCATC	0.353000													59	94					0	0	0.000781405	0	0
STK31	56164	broad.mit.edu	37	7	23827599	23827599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:23827599G>A	uc003sws.3	+	21	2555	c.2488G>A	c.(2488-2490)GAA>AAA	p.E830K	STK31_uc003swt.3_Missense_Mutation_p.E807K|STK31_uc011jze.1_Missense_Mutation_p.E830K|STK31_uc010kuq.2_Missense_Mutation_p.E807K|STK31_uc003swv.1_5'UTR	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	830	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTATCTATAGGAAACTTTAAA	0.348000													32	63					0	0	0.000814825	0	0
ABCA13	154664	broad.mit.edu	37	7	48559846	48559846	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:48559846C>T	uc003toq.2	+	53	14032	c.14007C>T	c.(14005-14007)CTC>CTT	p.L4669L	ABCA13_uc010kys.1_Silent_p.L1744L|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.L399L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4669	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CAGTACTTCTCCTCTTGAGGG	0.522000													7	18					0	0	0.000274275	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617696	54617696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:54617696G>A	uc010kzf.2	+	4	872	c.467G>A	c.(466-468)AGA>AAA	p.R156K	VSTM2A_uc010kze.2_Missense_Mutation_p.R156K|VSTM2A_uc003tqc.3_Missense_Mutation_p.R156K	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	156						extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			CATGCCCGCAGAATGCAGGCC	0.582000													6	5					0	0	3.59834e-05	0	0
PCLO	27445	broad.mit.edu	37	7	82582174	82582174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:82582174G>A	uc003uhx.2	-	5	8384	c.8095C>T	c.(8095-8097)CCT>TCT	p.P2699S	PCLO_uc003uhv.2_Missense_Mutation_p.P2699S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2630					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCTCTGGAGGAATTGTTATG	0.403000													15	21					0	0	0.000308642	0	0
PCLO	27445	broad.mit.edu	37	7	82584826	82584826	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:82584826G>A	uc003uhx.2	-	5	5732	c.5443C>T	c.(5443-5445)CGA>TGA	p.R1815*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R1815*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1746					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTCTGAGCTCGAAGTTCATCT	0.403000													70	103					0	0	0.000781405	0	0
CYP3A5	1577	broad.mit.edu	37	7	99272187	99272187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:99272187C>T	uc003urq.2	-	3	274	c.187G>A	c.(187-189)GAG>AAG	p.E63K	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Missense_Mutation_p.E53K|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron|CYP3A5_uc003urt.2_Missense_Mutation_p.E63K	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	63					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	TTATAGCACTCTGTGTCAAAT	0.398000													14	32					0	0	0.000422831	0	0
RELN	5649	broad.mit.edu	37	7	103322669	103322669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:103322669C>T	uc003vca.2	-	11	1343	c.1183G>A	c.(1183-1185)GGA>AGA	p.G395R	RELN_uc010liz.2_Missense_Mutation_p.G395R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	395					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CCTTCATTTCCATGGAAATAA	0.453000													44	84					0	0	0.000781405	0	0
TRPV5	56302	broad.mit.edu	37	7	142626589	142626589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr7:142626589C>T	uc003wby.1	-	4	685	c.421G>A	c.(421-423)GCC>ACC	p.A141T	TRPV5_uc003wbz.2_Missense_Mutation_p.A141T	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	141	ANK 3.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GAGACACTGGCCCTGCGGGTG	0.602000													29	71					0	0	0.000692331	0	0
MSR1	4481	broad.mit.edu	37	8	15967646	15967646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr8:15967646C>T	uc003wwz.2	-	10	1502	c.1304G>A	c.(1303-1305)GGG>GAG	p.G435E	MSR1_uc010lsu.2_Missense_Mutation_p.G453E|MSR1_uc003wxa.2_Missense_Mutation_p.G372E	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	435	SRCR.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		GGCTCTTGTCCCCCATTGCCG	0.373000													36	53					0	0	0.000814825	0	0
CNGB3	54714	broad.mit.edu	37	8	87679279	87679279	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr8:87679279G>A	uc003ydx.2	-	6	772	c.726C>T	c.(724-726)TTC>TTT	p.F242F	CNGB3_uc010maj.2_Silent_p.F104F	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	242	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TTTGATATGGGAAGACGAGGC	0.443000													35	45					0	0	0.000953801	0	0
SDC2	6383	broad.mit.edu	37	8	97621634	97621634	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr8:97621634T>C	uc003yhv.1	+	5	1082	c.464T>C	c.(463-465)ATT>ACT	p.I155T	SDC2_uc011lgu.1_Missense_Mutation_p.I126T	NM_002998	NP_002989	P34741	SDC2_HUMAN	syndecan 2 precursor	155	Helical; (Potential).					integral to plasma membrane	cytoskeletal protein binding|PDZ domain binding			ovary(2)	2	Breast(36;3.41e-05)				Sargramostim(DB00020)	GGTGGAGTTATTGGCTTTCTC	0.403000													37	86					0	0	0.000781405	0	0
COL14A1	7373	broad.mit.edu	37	8	121293298	121293299	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr8:121293298_121293299GG>AA	uc003yox.2	+	31	4089	c.3824_splice	c.e31+1	p.R1275_splice	COL14A1_uc003yoz.2_Splice_Site_p.R240_splice	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor						cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAGCCAACCAGGTATGTTTCTG	0.391000													27	43					0	0	6.4e-05	0	0
BAI1	575	broad.mit.edu	37	8	143562671	143562671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr8:143562671C>T	uc003ywm.2	+	9	2068	c.1885C>T	c.(1885-1887)CCC>TCC	p.P629S		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	629	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CTGGGAGCCCCCCACCTACAT	0.622000													19	51					0	0	0.000720815	0	0
TLN1	7094	broad.mit.edu	37	9	35717705	35717705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr9:35717705G>A	uc003zxt.2	-	18	2428	c.2074C>T	c.(2074-2076)CGG>TGG	p.R692W		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	692					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCCTCTGTCCGCTGGGCCACA	0.562000													35	26					0	0	0.000437636	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71532529	71532530	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr9:71532529_71532530CC>AA	uc004agu.2	+	9	1142_1143	c.837_838CC>AA	c.(835-840)TCCCTC>TCAATC	p.L280I	PIP5K1B_uc011lrq.1_Missense_Mutation_p.L280I|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	280	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		TGGACCATTCCCTCAAAGAGAA	0.470000													8	163					0	0	6.4e-05	0	0
C9orf173	441476	broad.mit.edu	37	9	140146341	140146341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr9:140146341G>A	uc004cmk.1	+	2	271	c.259G>A	c.(259-261)GAA>AAA	p.E87K	C9orf173_uc004cmj.1_Missense_Mutation_p.E88K|C9orf173_uc011meu.1_RNA|C9orf173_uc010ncd.1_RNA|C9orf173_uc011mev.1_Missense_Mutation_p.E87K|C9orf173_uc004cml.1_Missense_Mutation_p.E87K			Q8N7X2	CI173_HUMAN	SubName: Full=LOC441476 protein;	88										pancreas(1)	1						GACCCTGAGGGAACTATGTGA	0.637000													3	0					0	0	0.00024832	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212168	26212168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:26212168C>T	uc004dbr.2	+	2	354	c.205C>T	c.(205-207)CCC>TCC	p.P69S	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	69	Ser-rich.									ovary(3)	3						GGGAGTGTCACCCACTGGGTC	0.532000													32	57					0	0	0.000339439	0	0
PORCN	64840	broad.mit.edu	37	X	48372736	48372736	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:48372736G>A	uc010nie.1	+	9	986	c.828G>A	c.(826-828)GAG>GAA	p.E276E	PORCN_uc004djr.1_Silent_p.E271E|PORCN_uc004djs.1_Silent_p.E265E|PORCN_uc004djt.1_Silent_p.E194E|PORCN_uc011mlx.1_Silent_p.E194E|PORCN_uc004dju.1_Silent_p.E134E|PORCN_uc004djv.1_Silent_p.E276E|PORCN_uc004djw.1_Silent_p.E270E	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	276	Cytoplasmic (Potential).				Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						TTACCGAGGAGAAGGATCACC	0.637000													13	16					0	0	0.00010058	0	0
HUWE1	10075	broad.mit.edu	37	X	53641556	53641556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:53641556C>T	uc004dsp.2	-	23	2602	c.2200G>A	c.(2200-2202)GAA>AAA	p.E734K		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	734					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GCCTGTACTTCCTCTTCCTCC	0.448000													7	176					0	0	0.000274275	0	0
KIF4A	24137	broad.mit.edu	37	X	69594073	69594073	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:69594073C>T	uc004dyg.2	+	16	1874	c.1747C>T	c.(1747-1749)CAG>TAG	p.Q583*	KIF4A_uc010nkw.2_Nonsense_Mutation_p.Q583*|KIF4A_uc004dyf.1_Nonsense_Mutation_p.Q583*	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	583	Potential.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						TCTTGAACTTCAGACAGCAAA	0.353000													32	68					0	0	0.00058488	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83374903	83374903	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:83374903C>G	uc004eej.1	-	9	856	c.779G>C	c.(778-780)GGT>GCT	p.G260A	RPS6KA6_uc011mqt.1_Missense_Mutation_p.G260A|RPS6KA6_uc011mqu.1_Missense_Mutation_p.G157A|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	260	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						CATAAGAACACCATATGACCA	0.343000													25	43					0	0	0.000878237	0	0
NOX1	27035	broad.mit.edu	37	X	100125713	100125713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:100125713G>A	uc004egj.2	-	2	342	c.136C>T	c.(136-138)CTT>TTT	p.L46F	uc010nnf.2_Intron|NOX1_uc004egl.3_Missense_Mutation_p.L46F|NOX1_uc010nne.2_Missense_Mutation_p.L46F	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	46	Helical; (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						CTCACCCCAAGGATTTTTCTT	0.423000													55	99					0	0	0.000781405	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104440227	104440227	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:104440227G>A	uc004elz.1	+	3	909	c.153G>A	c.(151-153)GTG>GTA	p.V51V		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	51	Ig-like C2-type 1.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CAGTCCGAGTGAAATGTGCCC	0.448000													38	74					0	0	0.000191422	0	0
CAPN6	827	broad.mit.edu	37	X	110496399	110496399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:110496399C>T	uc004epc.1	-	4	511	c.343G>A	c.(343-345)GAA>AAA	p.E115K	CAPN6_uc011msu.1_5'UTR	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	115	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						GCGTATTTTTCTGTTTTTTGA	0.408000													25	70					0	0	0.000184323	0	0
GLUD2	2747	broad.mit.edu	37	X	120182675	120182675	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:120182675G>A	uc004eto.2	+	1	1214	c.1137G>A	c.(1135-1137)CTG>CTA	p.L379L		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	379					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	GTGACATACTGATCCCAGCTG	0.507000													83	142					0	0	0.000781405	0	0
ZNF280C	55609	broad.mit.edu	37	X	129343677	129343677	+	Silent	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:129343677G>A	uc004evm.2	-	16	2146	c.1992C>T	c.(1990-1992)AAC>AAT	p.N664N		NM_017666	NP_060136	Q8ND82	Z280C_HUMAN	zinc finger protein 280C	664					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)	3						TACCTGGATGGTTGCTATGAG	0.313000													77	175					0	0	0.000781405	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218372	130218372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:130218372G>A	uc004evz.2	+	5	1084	c.739G>A	c.(739-741)GAA>AAA	p.E247K	ARHGAP36_uc004ewa.2_Missense_Mutation_p.E235K|ARHGAP36_uc004ewb.2_Missense_Mutation_p.E216K|ARHGAP36_uc004ewc.2_Missense_Mutation_p.E111K	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	247	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CCAATTCATTGAAAAACATGG	0.478000													6	27					0	0	3.59834e-05	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130222697	130222697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:130222697C>T	uc004evz.2	+	12	1927	c.1582C>T	c.(1582-1584)CCA>TCA	p.P528S	ARHGAP36_uc004ewa.2_Missense_Mutation_p.P516S|ARHGAP36_uc004ewb.2_Missense_Mutation_p.P497S|ARHGAP36_uc004ewc.2_Missense_Mutation_p.P392S	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	528					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GCAAGACCGCCCATTGCTCCG	0.567000													26	41					0	0	0.000184323	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904694	144904694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:144904694G>A	uc004fcd.2	+	5	1741	c.751G>A	c.(751-753)GGG>AGG	p.G251R	SLITRK2_uc010nsp.2_Missense_Mutation_p.G251R|SLITRK2_uc010nso.2_Missense_Mutation_p.G251R|SLITRK2_uc011mwq.1_Missense_Mutation_p.G251R|SLITRK2_uc011mwr.1_Missense_Mutation_p.G251R|SLITRK2_uc011mws.1_Missense_Mutation_p.G251R|SLITRK2_uc004fcg.2_Missense_Mutation_p.G251R|SLITRK2_uc011mwt.1_Missense_Mutation_p.G251R	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	251	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TAGGTTGCATGGGAAAGACGT	0.512000													35	73					0	0	0.000374591	0	0
SLITRK2	84631	broad.mit.edu	37	X	144905881	144905881	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:144905881C>T	uc004fcd.2	+	5	2928	c.1938C>T	c.(1936-1938)CGC>CGT	p.R646R	SLITRK2_uc010nsp.2_Silent_p.R646R|SLITRK2_uc010nso.2_Silent_p.R646R|SLITRK2_uc011mwq.1_Silent_p.R646R|SLITRK2_uc011mwr.1_Silent_p.R646R|SLITRK2_uc011mws.1_Silent_p.R646R|SLITRK2_uc004fcg.2_Silent_p.R646R|SLITRK2_uc011mwt.1_Silent_p.R646R	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	646	Cytoplasmic (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTGAAACGCCGAAAGGGAG	0.428000													27	88					0	0	0.000184323	0	0
MAGEA11	4110	broad.mit.edu	37	X	148797875	148797875	+	Silent	SNP	C	T	T			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:148797875C>T	uc004fdq.2	+	5	831	c.729C>T	c.(727-729)ATC>ATT	p.I243I	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Silent_p.I214I	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	243	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					AGGGGCTGATCACAAAGGCAG	0.423000													56	101					0	0	0.000781405	0	0
SOX4	6659	broad.mit.edu	37	6	21595267	21595269	+	In_Frame_Del	DEL	GGC	-	-			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chr6:21595267_21595269delGGC	uc003ndi.2	+	1	1296_1298	c.502_504delGGC	c.(502-504)GGCdel	p.G173del		NM_003107	NP_003098	Q06945	SOX4_HUMAN	SRY (sex determining region Y)-box 4	173					canonical Wnt receptor signaling pathway|cardiac ventricle formation|cellular response to glucose stimulus|DNA damage response, detection of DNA damage|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|glial cell development|glial cell proliferation|limb bud formation|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein export from nucleus|negative regulation of protein ubiquitination|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|positive regulation of insulin secretion|positive regulation of N-terminal peptidyl-lysine acetylation|positive regulation of translation|pro-B cell differentiation|protein stabilization|skeletal system development|spinal cord motor neuron differentiation|sympathetic nervous system development|T cell differentiation	mitochondrion|nucleus	core promoter sequence-specific DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity				0	Ovarian(93;0.163)		all cancers(50;0.0751)|Epithelial(50;0.155)			cggccatgggggcggcggcggcg	0.355													2	4	---	---	---	---					
TSIX	9383	broad.mit.edu	37	X	73043137	73043140	+	RNA	DEL	TTTC	-	-			TCGA-EE-A29X-06A-11D-A196-08	TCGA-EE-A29X-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc919c96-a1f6-430e-be76-581cae76f473	9c3d25af-4dda-422e-ae86-9a621a65706d	g.chrX:73043137_73043140delTTTC	uc004ebn.2	+	1		c.31098_31101delTTTC			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						AACTTGCAtttttctttctttttt	0.338													2	4	---	---	---	---					
