Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	14976	14976	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:14976G>A	uc009vis.2	-	3		c.369C>T			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_Intron|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						CTACCCTTGCGCCTCATGACC	0.582													15	103					0	0	0.000229342	0	0
UBE2J2	118424	broad.mit.edu	37	1	1203256	1203256	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:1203256C>T	uc001adn.2	-	2	427	c.117G>A	c.(115-117)TCG>TCA	p.S39S	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Silent_p.S39S|UBE2J2_uc001adp.2_Silent_p.S39S|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	39	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		CGAGAATATTCGAAGGGAGGG	0.637													420	526					0	0	0.000781405	0	0
ATAD3C	219293	broad.mit.edu	37	1	1396178	1396178	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:1396178C>T	uc001aft.2	+	10	1856	c.861C>T	c.(859-861)GCC>GCT	p.A287A		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	287							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCGACTGGGCCATCAATGCCT	0.622													71	100					0	0	0.000781405	0	0
SSU72	29101	broad.mit.edu	37	1	1509893	1509893	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:1509893G>T	uc001agd.2	-	1	370	c.45C>A	c.(43-45)AAC>AAA	p.N15K	SSU72_uc009vkg.1_Missense_Mutation_p.N15K|SSU72_uc001age.1_Missense_Mutation_p.N15K	NM_014188	NP_054907	Q9NP77	SSU72_HUMAN	Ssu72 RNA polymerase II CTD phosphatase homolog	15					mRNA processing	cytoplasm|nucleus	phosphoprotein phosphatase activity				0	all_cancers(77;0.00125)|all_epithelial(69;0.000703)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.03e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;5.04e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.72e-23)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;0.000188)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|STAD - Stomach adenocarcinoma(132;0.00645)|BRCA - Breast invasive adenocarcinoma(365;0.00837)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TCCGGTTCTGGTTGCTCGAGC	0.721													103	184					4.94481e-55	3.48415e-54	0.000781405	1	0
MIB2	142678	broad.mit.edu	37	1	1563761	1563761	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:1563761C>G	uc001agg.2	+	15	2251	c.2124C>G	c.(2122-2124)GCC>GCG	p.A708A	MIB2_uc001agh.2_Silent_p.A694A|MIB2_uc001agi.2_Silent_p.A704A|MIB2_uc001agj.2_Silent_p.A549A|MIB2_uc001agk.2_Silent_p.A643A|MIB2_uc001agl.1_Silent_p.A664A|MIB2_uc001agm.2_Silent_p.A585A|MIB2_uc010nyq.1_Silent_p.A664A|MIB2_uc009vkh.2_Silent_p.A514A|MIB2_uc001agn.2_Silent_p.A340A|MIB2_uc001ago.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	708	ANK 6.				Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCGAGGTGGCCCAGATCCTCA	0.706													119	173					0	0	0.000781405	0	0
KIAA1751	85452	broad.mit.edu	37	1	1888096	1888096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:1888096G>A	uc001aim.1	-	17	2135	c.1979C>T	c.(1978-1980)CCC>CTC	p.P660L	KIAA1751_uc009vkz.1_Missense_Mutation_p.P660L	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	660										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CATCTCACAGGGCTCTGAAGC	0.592													153	221					0	0	0.000781405	0	0
PLCH2	9651	broad.mit.edu	37	1	2411717	2411717	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:2411717A>G	uc001aji.1	+	4	885	c.611A>G	c.(610-612)AAC>AGC	p.N204S	PLCH2_uc010nyz.1_5'UTR|PLCH2_uc009vle.1_5'UTR|PLCH2_uc001ajj.1_5'UTR|PLCH2_uc001ajk.1_5'UTR	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	204	EF-hand 1.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		CTCAACGTGAACCTGCCCCGG	0.637													278	485					0	0	0.000781405	0	0
MEGF6	1953	broad.mit.edu	37	1	3431121	3431122	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:3431121_3431122GG>AA	uc001akl.2	-	7	1072_1073	c.845_846CC>TT	c.(844-846)GCC>GTT	p.A282V	MEGF6_uc001akk.2_Missense_Mutation_p.A177V	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	282	EGF-like 4.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		TACCTTCACAGGCCTTGCCGTC	0.688													43	72					0	0	6.4e-05	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6529668	6529669	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:6529668_6529669CC>TT	uc001ano.1	-	18	2137_2138	c.2036_2037GG>AA	c.(2035-2037)AGG>AAA	p.R679K	PLEKHG5_uc001ann.1_Missense_Mutation_p.R660K|PLEKHG5_uc001anq.1_Missense_Mutation_p.R700K|PLEKHG5_uc001anp.1_Missense_Mutation_p.R700K|PLEKHG5_uc001anj.1_Missense_Mutation_p.R184K|PLEKHG5_uc009vma.1_Missense_Mutation_p.R463K|PLEKHG5_uc010nzr.1_Missense_Mutation_p.R692K|PLEKHG5_uc001ank.1_Missense_Mutation_p.R623K|PLEKHG5_uc009vmb.1_Missense_Mutation_p.R623K|PLEKHG5_uc001anl.1_Missense_Mutation_p.R623K|PLEKHG5_uc001anm.1_Missense_Mutation_p.R623K|PLEKHG5_uc001anr.1_5'Flank	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	679	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		TGACCCTGGTCCTCTCTGCCTT	0.614													312	510					0	0	6.4e-05	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6532641	6532641	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:6532641C>T	uc001ano.1	-	11	1295	c.1194G>A	c.(1192-1194)TGG>TGA	p.W398*	PLEKHG5_uc001ann.1_Nonsense_Mutation_p.W379*|PLEKHG5_uc001anq.1_Nonsense_Mutation_p.W419*|PLEKHG5_uc001anp.1_Nonsense_Mutation_p.W419*|PLEKHG5_uc001anj.1_5'Flank|PLEKHG5_uc009vma.1_Nonsense_Mutation_p.W182*|PLEKHG5_uc010nzr.1_Nonsense_Mutation_p.W411*|PLEKHG5_uc001ank.1_Nonsense_Mutation_p.W342*|PLEKHG5_uc009vmb.1_Nonsense_Mutation_p.W342*|PLEKHG5_uc001anl.1_Nonsense_Mutation_p.W342*|PLEKHG5_uc001anm.1_Nonsense_Mutation_p.W342*	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	398	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		GCAGCAGCTCCCACACCGCCT	0.667													92	151					0	0	0.000781405	0	0
PER3	8863	broad.mit.edu	37	1	7870507	7870507	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:7870507C>T	uc001aoo.2	+	12	1553	c.1378C>T	c.(1378-1380)CAG>TAG	p.Q460*	PER3_uc009vmg.1_Nonsense_Mutation_p.Q461*|PER3_uc009vmh.1_Nonsense_Mutation_p.Q461*|PER3_uc001aop.2_Nonsense_Mutation_p.Q461*|PER3_uc010nzw.1_Nonsense_Mutation_p.Q142*	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GATGACCTTGCAGCAGGTCTA	0.363													111	204					0	0	0.000781405	0	0
RERE	473	broad.mit.edu	37	1	8421428	8421429	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:8421428_8421429CG>AT	uc001ape.2	-	19	2948_2949	c.2138_2139CG>AT	c.(2137-2139)CCG>CAT	p.P713H	RERE_uc001apf.2_Missense_Mutation_p.P713H|RERE_uc010nzx.1_Missense_Mutation_p.P445H|RERE_uc001apd.2_Missense_Mutation_p.P159H	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	713					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TGGGGATGCTCGGGGACGTGCT	0.624													9	759					0	0	6.4e-05	0	0
APITD1	378708	broad.mit.edu	37	1	10500419	10500419	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:10500419C>T	uc001are.2	+	4	641	c.225C>T	c.(223-225)ACC>ACT	p.T75T	APITD1_uc001arf.2_Silent_p.T75T|APITD1_uc001arg.2_Intron|APITD1_uc001arh.2_Silent_p.T36T	NM_199294	NP_954988	Q8N2Z9	CENPS_HUMAN	apoptosis-inducing, TAF9-like domain 1 isoform	75					DNA repair|mitotic prometaphase|transcription initiation, DNA-dependent	chromosome, centromeric region|cytosol|Fanconi anaemia nuclear complex	chromatin binding|DNA binding|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.31e-07)|COAD - Colon adenocarcinoma(227;7.32e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000297)|Kidney(185;0.000747)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0487)		CGAAAAGAACCACAATTAACA	0.408													110	263					0	0	0.000781405	0	0
PTCHD2	57540	broad.mit.edu	37	1	11580751	11580751	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:11580751C>T	uc001ash.3	+	10	2346	c.2208C>T	c.(2206-2208)TTC>TTT	p.F736F	PTCHD2_uc001asi.1_Silent_p.F736F	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	736	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CAGGGCTGTTCGTCTCCATCC	0.657													165	297					0	0	0.000781405	0	0
FBXO2	26232	broad.mit.edu	37	1	11709882	11709883	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:11709882_11709883CC>TT	uc001asj.2	-	4	912_913	c.570_571GG>AA	c.(568-573)TGGGAG>TGAAAG	p.190_191WE>*K	FBXO2_uc009vna.2_Nonsense_Mutation_p.193_194WE>*K|FBXO2_uc009vnb.1_RNA	NM_012168	NP_036300	Q9UK22	FBX2_HUMAN	F-box only protein 2	190_191	FBA.				glycoprotein catabolic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|endoplasmic reticulum|membrane|microsome|SCF ubiquitin ligase complex	sugar binding|ubiquitin-protein ligase activity				0	Ovarian(185;0.249)	Lung NSC(185;9.37e-06)|all_lung(284;1.39e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|BRCA - Breast invasive adenocarcinoma(304;1.88e-06)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|Lung(427;0.0146)|LUSC - Lung squamous cell carcinoma(448;0.0228)|READ - Rectum adenocarcinoma(331;0.0649)		AGCAGCTCCTCCCAGTAGCCCT	0.639													189	368					0	0	6.4e-05	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12251980	12251980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:12251980G>A	uc001att.2	+	4	546	c.457G>A	c.(457-459)GGA>AGA	p.G153R	TNFRSF1B_uc001atu.2_5'UTR|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	153	TNFR-Cys 3.|Extracellular (Potential).				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	GGCCAGACCAGGTACGGGGTG	0.667													107	261					0	0	0.000781405	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854298	12854298	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:12854298G>A	uc001auj.1	+	3	625	c.522G>A	c.(520-522)AGG>AGA	p.R174R		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	174											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTTACCAAAGGAGAGGTTTAG	0.418													157	413					0	0	0.000781405	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885289	12885289	+	Silent	SNP	G	T	T	rs148273194	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:12885289G>T	uc001auk.2	-	4	1018	c.822C>A	c.(820-822)CTC>CTA	p.L274L		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	274	LRR 3.										0						GGCACTGGGAGAGATGCTTCA	0.458													10	427					5.50884e-06	3.83994e-05	0.00136819	1	0
PRAMEF4	400735	broad.mit.edu	37	1	12943111	12943111	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:12943111T>C	uc001aun.2	-	2	176	c.105A>G	c.(103-105)ACA>ACG	p.T35T		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	35										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGAAAAGTTCTGTGGGCAGCT	0.617													4	249					0	0	0.00074312	0	0
KAZ	23254	broad.mit.edu	37	1	15386692	15386692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:15386692C>T	uc001avm.3	+	6	1222	c.941C>T	c.(940-942)TCC>TTC	p.S314F	KAZ_uc009vog.1_Missense_Mutation_p.S314F|KAZ_uc010obj.1_Missense_Mutation_p.S314F|KAZ_uc001avo.2_Missense_Mutation_p.S308F|KAZ_uc001avp.2_Missense_Mutation_p.S220F|KAZ_uc001avq.2_Missense_Mutation_p.S220F|KAZ_uc001avr.2_Missense_Mutation_p.S217F	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	314	Interaction with PPL.				keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						CCCTGCCACTCCCGGCAGCCC	0.597													304	432					0	0	0.000781405	0	0
CASP9	842	broad.mit.edu	37	1	15821896	15821896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:15821896G>A	uc001awn.2	-	7	1015	c.920C>T	c.(919-921)TCC>TTC	p.S307F	CASP9_uc001awm.1_Missense_Mutation_p.S307F|CASP9_uc001awo.2_Missense_Mutation_p.S157F|CASP9_uc001awp.2_Missense_Mutation_p.S151F|CASP9_uc009voi.2_Missense_Mutation_p.S151F|CASP9_uc010obm.1_Missense_Mutation_p.S224F|CASP9_uc001awq.2_Missense_Mutation_p.S224F	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	307					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		ACTGCCAGGGGACTCGTCTTC	0.537													30	51					0	0	0.00127121	0	0
PLEKHM2	23207	broad.mit.edu	37	1	16058884	16058884	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:16058884T>C	uc010obo.1	+	18	2892	c.2665T>C	c.(2665-2667)TGC>CGC	p.C889R		NM_015164	NP_055979	Q8IWE5	PKHM2_HUMAN	pleckstrin homology domain containing, family M	889					Golgi organization	cytoplasm	kinesin binding			ovary(1)	1		Colorectal(325;0.000259)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00057)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		CTGCATACCCTGCTGCCTGGT	0.652													4	71					0	0	0.00024832	0	0
CLCNKA	1187	broad.mit.edu	37	1	16358311	16358311	+	Missense_Mutation	SNP	A	G	G	rs139001368		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:16358311A>G	uc001axu.2	+	16	1809	c.1729A>G	c.(1729-1731)ACC>GCC	p.T577A	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.T577A|CLCNKA_uc010obw.1_Missense_Mutation_p.T534A|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010oby.1_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	577	CBS 1.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CACAGACGTGACCGAGTATCC	0.582													5	492					0	0	0.000295444	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16532128	16532128	+	Missense_Mutation	SNP	G	A	A	rs142369162		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:16532128G>A	uc001ayc.1	-	9	1623	c.1486C>T	c.(1486-1488)CGC>TGC	p.R496C	ARHGEF19_uc009voo.1_5'UTR|ARHGEF19_uc001ayb.1_5'UTR	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	496	DH.				regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTCCAGGCGAGCCAGGATG	0.597													81	164					0	0	0.000781405	0	0
ESPNP	284729	broad.mit.edu	37	1	17033878	17033878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:17033878C>T	uc001azn.1	-	4	601	c.487G>A	c.(487-489)GAA>AAA	p.E163K	ESPNP_uc010ocj.1_3'UTR	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						TCGCGGACTTCCAGCTCCGCG	0.716													17	160					0	0	0.00121646	0	0
CROCC	9696	broad.mit.edu	37	1	17277559	17277559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:17277559C>T	uc001azt.2	+	20	3017	c.2948C>T	c.(2947-2949)TCT>TTT	p.S983F	CROCC_uc009voz.1_Intron|CROCC_uc001azu.2_Missense_Mutation_p.S286F	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	983	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GCCCAGGCCTCTCTGCGGGAG	0.622													113	198					0	0	0.000781405	0	0
UBXN10	127733	broad.mit.edu	37	1	20517564	20517565	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:20517564_20517565GG>AA	uc001bdb.2	+	2	594_595	c.510_511GG>AA	c.(508-513)GTGGAG>GTAAAG	p.E171K		NM_152376	NP_689589	Q96LJ8	UBX10_HUMAN	UBX domain protein 10	171										ovary(1)	1						CTTGTGCCGTGGAGAGGAAATT	0.53													192	277					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	1	21753549	21753549	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:21753549C>T	uc001bep.1	-	2		c.42G>A								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		TCTTCCTCTTCTTGGTCCTTT	0.463													50	119					0	0	0.000781405	0	0
NBPF3	84224	broad.mit.edu	37	1	21807440	21807440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:21807440G>A	uc001ber.2	+	12	1749	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	NBPF3_uc001bes.2_Missense_Mutation_p.E411K|NBPF3_uc009vqb.2_Missense_Mutation_p.E455K|NBPF3_uc010odm.1_Missense_Mutation_p.E397K	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	467	Poly-Glu.|NBPF 4.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AAAGGACCAAGAAGAGGAAGA	0.463													157	422					0	0	0.000781405	0	0
ALPL	249	broad.mit.edu	37	1	21894683	21894683	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:21894683G>A	uc001bet.2	+	7	992	c.735G>A	c.(733-735)ACG>ACA	p.T245T	ALPL_uc010odn.1_Silent_p.T193T|ALPL_uc010odo.1_Silent_p.T190T|ALPL_uc010odp.1_Silent_p.T168T|ALPL_uc001beu.3_Silent_p.T245T	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	245					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	CCAGGGGCACGAGGCTGGACG	0.552													299	398					0	0	0.000781405	0	0
HSPG2	3339	broad.mit.edu	37	1	22204701	22204701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:22204701G>A	uc001bfj.2	-	21	2703	c.2663C>T	c.(2662-2664)TCC>TTC	p.S888F	HSPG2_uc009vqd.2_Missense_Mutation_p.S889F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	888	Laminin EGF-like 4; truncated.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GGCCTCCCCGGAGGTCCCCAT	0.637													90	188					0	0	0.000781405	0	0
WNT4	54361	broad.mit.edu	37	1	22448006	22448006	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:22448006C>G	uc001bfs.3	-	3	481	c.377G>C	c.(376-378)CGG>CCG	p.R126P	WNT4_uc010odt.1_Missense_Mutation_p.R63P	NM_030761	NP_110388	P56705	WNT4_HUMAN	wingless-type MMTV integration site family,	126					adrenal gland development|androgen biosynthetic process|anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|dermatome development|endoderm development|epithelial to mesenchymal transition|establishment of protein localization in plasma membrane|female gonad development|female sex determination|liver development|male gonad development|mesonephric tubule development|metanephric mesenchymal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of male gonad development|negative regulation of testicular blood vessel morphogenesis|negative regulation of testosterone biosynthetic process|negative regulation of transcription, DNA-dependent|oocyte development|paramesonephric duct development|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of collagen biosynthetic process|positive regulation of cortisol biosynthetic process|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|protein palmitoylation|renal vesicle formation|smooth muscle cell differentiation|somatotropin secreting cell differentiation|tertiary branching involved in mammary gland duct morphogenesis|thyroid-stimulating hormone-secreting cell differentiation|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|extracellular space|Golgi apparatus|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|signal transducer activity|transcription corepressor activity			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;9.02e-26)|Colorectal(126;1.71e-07)|COAD - Colon adenocarcinoma(152;1.17e-05)|GBM - Glioblastoma multiforme(114;2.01e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000568)|KIRC - Kidney renal clear cell carcinoma(1967;0.00277)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		GCTGCACGCCCGCGTCACTGC	0.667													5	520					0	0	0.000602214	0	0
EPHB2	2048	broad.mit.edu	37	1	23233372	23233372	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:23233372G>A	uc009vqj.1	+	11	2203	c.2058G>A	c.(2056-2058)GAG>GAA	p.E686E	EPHB2_uc001bge.2_Silent_p.E687E|EPHB2_uc001bgf.2_Silent_p.E686E|EPHB2_uc010odu.1_Silent_p.E628E	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	686	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		TCCACCTGGAGGGTGTCGTGA	0.592									Hereditary_Prostate_Cancer				86	182					0	0	0.000781405	0	0
EPHB2	2048	broad.mit.edu	37	1	23236991	23236991	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:23236991C>T	uc009vqj.1	+	14	2764	c.2619C>T	c.(2617-2619)TTC>TTT	p.F873F	EPHB2_uc001bge.2_Silent_p.F874F|EPHB2_uc001bgf.2_Silent_p.F873F|EPHB2_uc010odu.1_Silent_p.F815F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	873	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GGCCCAAGTTCGGCCAAATTG	0.622									Hereditary_Prostate_Cancer				139	255					0	0	0.000781405	0	0
HTR1D	3352	broad.mit.edu	37	1	23520573	23520574	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:23520573_23520574AC>TT	uc001bgn.2	-	1	649_650	c.139_140GT>AA	c.(139-141)GTC>AAC	p.V47N		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	47	Helical; Name=1; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	CAGTGTGATGACGGAAAGGACC	0.574													170	304					0	0	6.4e-05	0	0
PDIK1L	149420	broad.mit.edu	37	1	26440897	26440897	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:26440897G>C	uc010oew.1	+	2	371	c.98G>C	c.(97-99)CGG>CCG	p.R33P	PDIK1L_uc001blj.3_Missense_Mutation_p.R33P|PDIK1L_uc009vsb.2_Missense_Mutation_p.R33P	NM_152835	NP_690048	Q8N165	PDK1L_HUMAN	PDLIM1 interacting kinase 1 like	33	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity				0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00239)|all_lung(284;0.00366)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000735)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.015)|READ - Rectum adenocarcinoma(331;0.0649)		ACCTCTGCACGGGTGGCAGTG	0.478													4	313					0	0	0.00024832	0	0
ARID1A	8289	broad.mit.edu	37	1	27088784	27088785	+	Missense_Mutation	DNP	CC	TT	TT	rs140683722		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:27088784_27088785CC>TT	uc001bmv.1	+	7	2766_2767	c.2393_2394CC>TT	c.(2392-2394)CCC>CTT	p.P798L	ARID1A_uc001bmt.1_Missense_Mutation_p.P798L|ARID1A_uc001bmu.1_Missense_Mutation_p.P798L|ARID1A_uc001bmw.1_Missense_Mutation_p.P415L	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	798					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		AGCTATGGTCCCCAGGGGGGTC	0.559			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								66	178					0	0	6.4e-05	0	0
C1orf172	126695	broad.mit.edu	37	1	27277248	27277248	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:27277248C>T	uc001bni.1	-	3	1129	c.1040_splice	c.e3-1	p.E347_splice		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695											large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		ACTGTCAGCTCTAGGGAGGGA	0.562													243	410					0	0	0.000781405	0	0
ZCCHC17	51538	broad.mit.edu	37	1	31810109	31810109	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:31810109T>C	uc001bsp.1	+	4	348	c.212T>C	c.(211-213)CTT>CCT	p.L71P	ZCCHC17_uc001bsq.1_Missense_Mutation_p.L63P|ZCCHC17_uc010ogf.1_Missense_Mutation_p.L47P|ZCCHC17_uc009vtu.1_Missense_Mutation_p.L47P|ZCCHC17_uc001bsr.1_Missense_Mutation_p.L71P|ZCCHC17_uc009vtv.1_Missense_Mutation_p.L47P	NM_016505	NP_057589	Q9NP64	NO40_HUMAN	zinc finger, CCHC domain containing 17	71	S1 motif.					nucleolus	RNA binding|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)|all_neural(195;0.146)|Medulloblastoma(700;0.151)|Breast(348;0.222)		STAD - Stomach adenocarcinoma(196;0.0215)|READ - Rectum adenocarcinoma(331;0.168)		TGGGTGAAGCTTATTGGCCGA	0.443													114	203					0	0	0.000781405	0	0
PEF1	553115	broad.mit.edu	37	1	32101024	32101024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:32101024G>A	uc001bth.1	-	2	136	c.124C>T	c.(124-126)CCT>TCT	p.P42S	PEF1_uc001bte.1_5'Flank|PEF1_uc001btf.1_5'Flank|PEF1_uc001btg.1_5'UTR|PEF1_uc010ogm.1_Missense_Mutation_p.P42S	NM_012392	NP_036524	Q9UBV8	PEF1_HUMAN	penta-EF-hand domain containing 1	42	9 X 9 AA approximate tandem repeat of [AP]-P-G-G-P-Y-G-G-P-P.|3.				response to calcium ion	cytoplasm|membrane	calcium ion binding|protein heterodimerization activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)|all_neural(195;0.186)		STAD - Stomach adenocarcinoma(196;0.0546)		CCACCACCAGGGGGTAGCCCA	0.647													64	113					0	0	0.000781405	0	0
RNF19B	127544	broad.mit.edu	37	1	33402777	33402777	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:33402777T>C	uc010oho.1	-	9	1829	c.1829A>G	c.(1828-1830)GAC>GGC	p.D610G	RNF19B_uc001bwm.3_3'UTR|RNF19B_uc010ohp.1_Missense_Mutation_p.D609G	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	610						integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				ATGGAGCGAGTCCTCCGTGCT	0.507													11	584					0	0	0.000673444	0	0
AK2	204	broad.mit.edu	37	1	33487220	33487220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:33487220G>A	uc001bwp.1	-	3	346	c.304C>T	c.(304-306)CCT>TCT	p.P102S	uc001bwn.2_Intron|AK2_uc001bwo.1_Missense_Mutation_p.P102S|AK2_uc010ohq.1_Missense_Mutation_p.P102S|AK2_uc009vud.1_Missense_Mutation_p.P60S|AK2_uc010ohr.1_Missense_Mutation_p.P54S|AK2_uc001bwq.1_Missense_Mutation_p.P54S	NM_001625	NP_001616	P54819	KAD2_HUMAN	adenylate kinase 2 isoform a	102					nucleobase, nucleoside and nucleotide interconversion	mitochondrial intermembrane space	adenylate kinase activity|ATP binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				ACAGTCCGAGGGAAGCCATCC	0.418													42	98					0	0	0.000781405	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956860	33956860	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:33956860C>T	uc001bxj.3	+	6	1169	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	ZSCAN20_uc001bxk.2_Silent_p.F280F|ZSCAN20_uc009vui.2_Silent_p.F334F	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	334					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCAAGACTTTCCTGGCAATTT	0.527													113	137					0	0	0.000781405	0	0
CSMD2	114784	broad.mit.edu	37	1	34033255	34033256	+	Missense_Mutation	DNP	CC	TT	TT	rs144107939		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:34033255_34033256CC>TT	uc001bxn.1	-	54	8277_8278	c.8248_8249GG>AA	c.(8248-8250)GGC>AAC	p.G2750N	CSMD2_uc001bxm.1_Missense_Mutation_p.G2773N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2750	Sushi 18.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CACAGACATGCCGATCAGGCGG	0.559													37	58					0	0	6.4e-05	0	0
CSMD2	114784	broad.mit.edu	37	1	34033349	34033349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:34033349G>A	uc001bxn.1	-	54	8184	c.8155C>T	c.(8155-8157)CCT>TCT	p.P2719S	CSMD2_uc001bxm.1_Missense_Mutation_p.P2742S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2719	Sushi 18.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATGGGCTCAGGAGTCCCACAG	0.537													11	34					0	0	0.000673444	0	0
CSMD2	114784	broad.mit.edu	37	1	34182043	34182043	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:34182043G>A	uc001bxn.1	-	20	2969	c.2940C>T	c.(2938-2940)ATC>ATT	p.I980I	CSMD2_uc001bxm.1_Silent_p.I1020I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	980	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CGTTCTCAGTGATGAGGAGGT	0.577													107	178					0	0	0.000781405	0	0
CSMD2	114784	broad.mit.edu	37	1	34208909	34208909	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:34208909C>T	uc001bxn.1	-	14	2054	c.2025G>A	c.(2023-2025)GGG>GGA	p.G675G	CSMD2_uc001bxm.1_Silent_p.G715G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	675	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCCCCTCTTCCCTGTGGAGT	0.592													30	35					0	0	0.00127121	0	0
ZMYM1	79830	broad.mit.edu	37	1	35580522	35580522	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:35580522C>T	uc001bym.2	+	11	3239	c.3091C>T	c.(3091-3093)CGA>TGA	p.R1031*	ZMYM1_uc001byn.2_Nonsense_Mutation_p.R1031*|ZMYM1_uc010ohu.1_Nonsense_Mutation_p.R1012*|ZMYM1_uc001byo.2_Nonsense_Mutation_p.R671*|ZMYM1_uc009vut.2_Nonsense_Mutation_p.R956*	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	1031						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TAGATTTTATCGACATTATGC	0.328													240	419					0	0	0.000781405	0	0
EPHA10	284656	broad.mit.edu	37	1	38188738	38188738	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:38188738G>A	uc009vvi.2	-	10	2021	c.1935C>T	c.(1933-1935)GTC>GTT	p.V645V	EPHA10_uc001cbt.2_5'Flank|EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	645	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCTCCAGCGTGACGCTTTTCG	0.612													173	313					0	0	0.000781405	0	0
MANEAL	149175	broad.mit.edu	37	1	38265300	38265300	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:38265300T>G	uc001cby.2	+	4	880	c.799T>G	c.(799-801)TTT>GTT	p.F267V	MANEAL_uc001cbx.2_Intron|MANEAL_uc001cbz.2_Missense_Mutation_p.F45V	NM_001113482	NP_001106954	Q5VSG8	MANEL_HUMAN	mannosidase, endo-alpha-like isoform 3	267	Lumenal (Potential).					Golgi membrane|integral to membrane	hydrolase activity				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CCTCCCACTCTTTTATATCTA	0.557													344	565					0	0	0.000781405	0	0
DEM1	64789	broad.mit.edu	37	1	40980611	40980611	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:40980611T>G	uc001cfp.2	+	3	600	c.395T>G	c.(394-396)GTG>GGG	p.V132G	DEM1_uc001cfq.2_Missense_Mutation_p.V132G|DEM1_uc001cfr.2_Missense_Mutation_p.V132G|DEM1_uc001cfs.2_Missense_Mutation_p.V132G	NM_022774	NP_073611	Q9H790	EXO5_HUMAN	defects in morphology 1 homolog	132							DNA binding|exonuclease activity				0						CATGATCTTGTGACTGTCCCA	0.483													160	300					0	0	0.000781405	0	0
KIAA0467	23334	broad.mit.edu	37	1	43880764	43880764	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:43880764G>A	uc009vws.1	+	5	594	c.510G>A	c.(508-510)CAG>CAA	p.Q170Q				Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	170						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGCTGGTACAGGGCTGCCTCT	0.547											OREG0013431	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	67					0	0	0.000814825	0	0
KDM4A	9682	broad.mit.edu	37	1	44149375	44149375	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:44149375T>A	uc001cjx.2	+	12	1921	c.1755T>A	c.(1753-1755)TTT>TTA	p.F585L	KDM4A_uc010oki.1_Intron	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	585					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						AATACATGTTTTCCCTAGAAG	0.468													75	118					0	0	0.000781405	0	0
KIF2C	11004	broad.mit.edu	37	1	45227596	45227596	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:45227596G>A	uc001cmg.3	+	17	1807	c.1692G>A	c.(1690-1692)ACG>ACA	p.T564T	KIF2C_uc010olb.1_Silent_p.T523T|KIF2C_uc010olc.1_Silent_p.T451T|KIF2C_uc001cmh.3_Silent_p.T510T	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	564					blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGATTGCCACGATCTCACCAG	0.512													151	272					0	0	0.000781405	0	0
PTCH2	8643	broad.mit.edu	37	1	45295599	45295599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:45295599G>A	uc010olf.1	-	7	929	c.917C>T	c.(916-918)CCC>CTC	p.P306L	PTCH2_uc010olg.1_Missense_Mutation_p.P5L	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	306	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CTCTCCTTGGGGGTCTCTGGC	0.582									Basal_Cell_Nevus_syndrome				155	226					0	0	0.000781405	0	0
AKR1A1	10327	broad.mit.edu	37	1	46034623	46034623	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:46034623C>T	uc001cod.2	+	8	1241	c.777C>T	c.(775-777)ATC>ATT	p.I259I	AKR1A1_uc001coe.2_Silent_p.I259I|AKR1A1_uc001cof.2_Silent_p.I65I|AKR1A1_uc001cog.2_RNA	NM_006066	NP_006057	P14550	AK1A1_HUMAN	aldo-keto reductase family 1, member A1	259	NADP (By similarity).				glucose metabolic process		alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					GGAAAGTGATCTGCATCCCCA	0.453													181	280					0	0	0.000781405	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325399	47325399	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:47325399G>A	uc001cqo.1	-	9		c.1169C>T				NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						CTACCGGTGCGTAGAGGCGGA	0.473													16	83					0	0	0.000308642	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47351173	47351173	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:47351173C>T	uc001cqo.1	-	4		c.488G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TGAATATTTTCAGAATGCTGA	0.478													15	17					0	0	0.000219431	0	0
FAM159A	348378	broad.mit.edu	37	1	53108537	53108537	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:53108537T>A	uc001cuf.2	+	2	285	c.185T>A	c.(184-186)ATT>AAT	p.I62N	FAM159A_uc001cug.1_RNA|FAM159A_uc001cuh.2_RNA	NM_001042693	NP_001036158	Q6UWV7	F159A_HUMAN	hypothetical protein LOC348378	62	Helical; (Potential).					integral to membrane					0						CTTCCCAGCATTGGCGCTCTC	0.527													343	521					0	0	0.000781405	0	0
TMEM48	55706	broad.mit.edu	37	1	54262616	54262616	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:54262616G>C	uc001cvs.2	-	12	1665	c.1424C>G	c.(1423-1425)CCT>CGT	p.P475R	TMEM48_uc010onu.1_Missense_Mutation_p.P435R|TMEM48_uc001cvt.2_Missense_Mutation_p.P352R|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_Missense_Mutation_p.P140R	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	475	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TATTAGCTGAGGACTTTGCGG	0.423													89	123					0	0	0.000781405	0	0
C1orf175	374977	broad.mit.edu	37	1	55144429	55144429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:55144429G>A	uc010ooe.1	+	11	2275	c.1951G>A	c.(1951-1953)GAA>AAA	p.E651K	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.E219K|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.E169K|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.E651K|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	651						integral to membrane	binding				0						CAGAGATAAGGAAGAGACCAA	0.413													69	125					0	0	0.000781405	0	0
C1orf175	374977	broad.mit.edu	37	1	55174699	55174699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:55174699C>T	uc010ooe.1	+	23	4004	c.3680C>T	c.(3679-3681)CCC>CTC	p.P1227L	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.P745L|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.P428L	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1227						integral to membrane	binding				0						TCCCTGGTCCCCTGCATGGAG	0.522													217	373					0	0	0.000781405	0	0
C1orf168	199920	broad.mit.edu	37	1	57216728	57216728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:57216728G>A	uc001cym.3	-	9	1782	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	459										ovary(3)|skin(2)	5						GTGGCCTTGGGAGTGCCTGGC	0.418													15	27					0	0	0.000566183	0	0
C8A	731	broad.mit.edu	37	1	57349169	57349169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:57349169G>A	uc001cyo.2	+	6	802	c.670G>A	c.(670-672)GGA>AGA	p.G224R		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	224	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GGCAGATACTGGAATCTCCTC	0.368													6	13					0	0	0.00116845	0	0
DAB1	1600	broad.mit.edu	37	1	57481073	57481073	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:57481073G>A	uc001cys.1	-	14	1601	c.927C>T	c.(925-927)TCC>TCT	p.S309S	DAB1_uc001cyt.1_Silent_p.S307S|DAB1_uc001cyq.1_Silent_p.S307S|DAB1_uc001cyr.1_Silent_p.S223S|DAB1_uc009vzw.1_Silent_p.S291S|DAB1_uc009vzx.1_Silent_p.S309S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	342					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GACCCCAGAAGGACGGGAGGA	0.607													98	182					0	0	0.000781405	0	0
HOOK1	51361	broad.mit.edu	37	1	60299103	60299104	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:60299103_60299104AC>CT	uc009wad.2	+	6	402_403	c.300_301AC>CT	c.(298-303)GCACTT>GCCTTT	p.L101F	HOOK1_uc001czo.2_Missense_Mutation_p.L101F|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Missense_Mutation_p.L59F	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	101	Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					TTTCAGAAGCACTTATCCCTGA	0.361													19	25					0	0	6.4e-05	0	0
INADL	10207	broad.mit.edu	37	1	62503682	62503682	+	Silent	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:62503682T>A	uc001dab.2	+	30	4107	c.3993T>A	c.(3991-3993)ACT>ACA	p.T1331T	INADL_uc009waf.1_Silent_p.T1331T|INADL_uc001daa.2_Silent_p.T1331T|INADL_uc001dad.3_Silent_p.T1028T|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Silent_p.T115T|INADL_uc009wag.2_Silent_p.T115T|INADL_uc010oou.1_Silent_p.T4T	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1331					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TGGCCGTTACTCCCTTTCCAG	0.388													24	55					0	0	0.00106085	0	0
CACHD1	57685	broad.mit.edu	37	1	65130324	65130324	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:65130324C>T	uc001dbo.1	+	15	2190	c.2085C>T	c.(2083-2085)TCC>TCT	p.S695S	CACHD1_uc001dbp.1_Silent_p.S450S|CACHD1_uc001dbq.1_Silent_p.S450S|CACHD1_uc010opa.1_5'Flank	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	746	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						ATCCTGGTTCCCTCATGGACA	0.458													48	129					0	0	0.000781405	0	0
PDE4B	5142	broad.mit.edu	37	1	66838170	66838170	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:66838170C>T	uc001dcn.2	+	17	2211	c.2020C>T	c.(2020-2022)CTG>TTG	p.L674L	PDE4B_uc009war.2_Silent_p.L582L|PDE4B_uc001dco.2_Silent_p.L674L|PDE4B_uc001dcp.2_Silent_p.L659L|PDE4B_uc001dcq.2_Silent_p.L502L|PDE4B_uc009was.2_Silent_p.L441L	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	674					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	CTGCCAGGGTCTGATGGAGAA	0.488													19	27					0	0	0.00074312	0	0
DEPDC1	55635	broad.mit.edu	37	1	68955157	68955157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:68955157C>T	uc001dem.3	-	3	566	c.449G>A	c.(448-450)AGG>AAG	p.R150K	DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.R150K	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	150					intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		TAATCCATGCCTTTTAGGAGT	0.274													109	184					0	0	0.000781405	0	0
C1orf173	127254	broad.mit.edu	37	1	75038879	75038879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:75038879C>T	uc001dgg.2	-	14	2734	c.2515G>A	c.(2515-2517)GCA>ACA	p.A839T		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	839	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GCTCCCTCTGCCCCCCTTTCT	0.557													23	34					0	0	0.000375601	0	0
C1orf173	127254	broad.mit.edu	37	1	75086427	75086427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:75086427G>A	uc001dgg.2	-	8	1210	c.991C>T	c.(991-993)CTT>TTT	p.L331F	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.L125F	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	331										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTTTTTCAAGTAGTTTGCCT	0.353													34	66					0	0	0.000692331	0	0
AK5	26289	broad.mit.edu	37	1	78001592	78001592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:78001592C>T	uc001dhn.2	+	13	1746	c.1489C>T	c.(1489-1491)CTT>TTT	p.L497F	AK5_uc001dho.2_Missense_Mutation_p.L471F	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	497					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						GACCAACCGCCTTCTCCAAAG	0.582													88	134					0	0	0.000781405	0	0
PTGFR	5737	broad.mit.edu	37	1	78958572	78958572	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:78958572C>T	uc001din.2	+	2	410	c.144C>T	c.(142-144)ATC>ATT	p.I48I	PTGFR_uc001dim.2_Silent_p.I48I	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	48	Helical; Name=1; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	GCCTTGCCATCGCCATTCTCA	0.453													305	536					0	0	0.000781405	0	0
ELTD1	64123	broad.mit.edu	37	1	79385897	79385897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:79385897G>A	uc001diq.3	-	10	1588	c.1432C>T	c.(1432-1434)CTT>TTT	p.L478F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	478	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ATCCCAACAAGAAAAACAAGT	0.328													5	17					0	0	0.000602214	0	0
CLCA3P	9629	broad.mit.edu	37	1	87101784	87101784	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:87101784G>A	uc010osh.1	+	3		c.464G>A				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						TATGGGCCTCGAGGTAGAGAT	0.313													37	71					0	0	0.000509022	0	0
GBP1	2633	broad.mit.edu	37	1	89522545	89522545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:89522545C>T	uc001dmx.2	-	7	1367	c.1147G>A	c.(1147-1149)GAG>AAG	p.E383K		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	383					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		ACCGCTAACTCCTTTTGAAAT	0.413													103	201					0	0	0.000781405	0	0
GBP7	388646	broad.mit.edu	37	1	89618368	89618368	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:89618368C>T	uc001dna.2	-	4	550	c.411G>A	c.(409-411)CAG>CAA	p.Q137Q	GBP2_uc001dmy.1_5'Flank	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	137						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		GCTCCAGGGCCTGGTGGTTGA	0.498													16	19					0	0	0.000422831	0	0
GBP4	115361	broad.mit.edu	37	1	89655736	89655736	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:89655736G>A	uc001dnb.2	-	7	1298	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	394						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		GCTTCTTCTGGAATTCATGGT	0.478													71	102					0	0	0.000781405	0	0
LRRC8B	23507	broad.mit.edu	37	1	90048542	90048542	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:90048542G>A	uc001dni.2	+	7	840	c.333G>A	c.(331-333)GAG>GAA	p.E111E	LRRC8B_uc001dnh.2_Silent_p.E111E|LRRC8B_uc001dnj.2_Silent_p.E111E	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	111						integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		TCTGTTACGAGAAACAGCTCC	0.507													32	73					0	0	0.000279167	0	0
HSP90B3P	343477	broad.mit.edu	37	1	92109026	92109026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:92109026G>A	uc010osx.1	+	3	1053	c.1053G>A	c.(1051-1053)ATG>ATA	p.M351I		NR_003130				SubName: Full=cDNA FLJ58812, highly similar to Endoplasmin (Heat shock protein 90kDa beta member 1);												0						AGGAAGGAATGAAGTTTGATA	0.403													12	34					0	0	0.00136819	0	0
TGFBR3	7049	broad.mit.edu	37	1	92195501	92195501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:92195501C>T	uc001doh.2	-	6	1064	c.598G>A	c.(598-600)GGG>AGG	p.G200R	TGFBR3_uc009wde.2_5'UTR|TGFBR3_uc010osy.1_Missense_Mutation_p.G158R|TGFBR3_uc001doi.2_Missense_Mutation_p.G200R|TGFBR3_uc001doj.2_Missense_Mutation_p.G200R	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	200	Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		AAATTCTTCCCTATGTTGCAC	0.478													49	55					0	0	0.000781405	0	0
BCAR3	8412	broad.mit.edu	37	1	94049648	94049648	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:94049648G>A	uc001dpz.2	-	6	1235	c.960C>T	c.(958-960)GCC>GCT	p.A320A	BCAR3_uc001dqa.2_Silent_p.A320A|BCAR3_uc001dqb.2_Silent_p.A320A|BCAR3_uc001dpx.3_5'UTR|BCAR3_uc001dpy.2_Silent_p.A229A|BCAR3_uc009wdm.1_5'UTR	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	320					response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		GATCCAGGCAGGCGGGCTGGC	0.458													129	209					0	0	0.000781405	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94337785	94337785	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:94337785C>G	uc001dqf.2	-	5	1948	c.1910G>C	c.(1909-1911)CGA>CCA	p.R637P	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	637					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		TGTTTTTTGTCGTTCTTTCTG	0.343													138	263					0	0	0.000781405	0	0
ABCA4	24	broad.mit.edu	37	1	94486960	94486960	+	Nonsense_Mutation	SNP	C	T	T	rs61752439		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:94486960C>T	uc001dqh.2	-	35	4958	c.4854G>A	c.(4852-4854)TGG>TGA	p.W1618*	ABCA4_uc009wdp.1_5'Flank	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1618	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TGTTATTAAACCACACCTAGA	0.512													114	188					0	0	0.000781405	0	0
ABCD3	5825	broad.mit.edu	37	1	94955483	94955483	+	Missense_Mutation	SNP	C	T	T	rs148848670		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:94955483C>T	uc001dqn.3	+	15	1376	c.1274C>T	c.(1273-1275)CCC>CTC	p.P425L	ABCD3_uc010oto.1_Missense_Mutation_p.P449L|ABCD3_uc010otp.1_Missense_Mutation_p.P352L|ABCD3_uc009wdr.2_Missense_Mutation_p.P315L|ABCD3_uc001dqo.3_Missense_Mutation_p.P113L	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	425					peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		CAAGTCATTCCCTTGATACCT	0.323													21	55					0	0	0.000229342	0	0
DPYD	1806	broad.mit.edu	37	1	97981290	97981290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:97981290G>A	uc001drv.2	-	13	1869	c.1732C>T	c.(1732-1734)CTT>TTT	p.L578F		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	578					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ACCTTATCAAGAGAGAAAGTT	0.333													9	25					0	0	0.000673444	0	0
DPYD	1806	broad.mit.edu	37	1	97981408	97981408	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:97981408G>A	uc001drv.2	-	13	1751	c.1614C>T	c.(1612-1614)GCC>GCT	p.A538A		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	538					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ACTTCAATCCGGCCATTTCTA	0.453													9	17					0	0	0.000274275	0	0
LPPR4	9890	broad.mit.edu	37	1	99772125	99772125	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:99772125C>T	uc001dse.2	+	7	1957	c.1851C>T	c.(1849-1851)CCC>CCT	p.P617P	LPPR4_uc010oue.1_Silent_p.P559P	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	617							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		ACCATGAGCCCAGTGGGATAG	0.562													9	16					0	0	0.000442599	0	0
CLCC1	23155	broad.mit.edu	37	1	109477531	109477531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:109477531C>T	uc001dwe.1	-	11	1509	c.1417G>A	c.(1417-1419)GAG>AAG	p.E473K	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.E473K|CLCC1_uc001dwg.1_Missense_Mutation_p.E423K|CLCC1_uc009wes.1_Missense_Mutation_p.E352K|CLCC1_uc009wet.1_Missense_Mutation_p.E288K	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	473						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		CCACCTGTCTCCTTGGGCTTT	0.418													375	555					0	0	0.000781405	0	0
SYPL2	284612	broad.mit.edu	37	1	110022024	110022024	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:110022024C>T	uc001dxp.2	+	6	1039	c.673C>T	c.(673-675)CTG>TTG	p.L225L	SYPL2_uc010ovk.1_Silent_p.L161L	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	225	Helical; (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		CAACTTCTTCCTGTGGGCCGG	0.403													351	584					0	0	0.000781405	0	0
KCNA10	3744	broad.mit.edu	37	1	111060112	111060112	+	Missense_Mutation	SNP	C	T	T	rs144405106	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:111060112C>T	uc001dzt.1	-	1	1686	c.1298G>A	c.(1297-1299)GGG>GAG	p.G433E		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	433						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		AATCTTCCCCCCTGGGGTGGT	0.562													22	59					0	0	0.000229342	0	0
KCNA10	3744	broad.mit.edu	37	1	111060471	111060471	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:111060471G>A	uc001dzt.1	-	1	1327	c.939C>T	c.(937-939)ATC>ATT	p.I313I		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	313	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CAAAGTAGGGGATAATGGAGA	0.527													87	147					0	0	0.000781405	0	0
KCNA2	3737	broad.mit.edu	37	1	111146754	111146754	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:111146754G>A	uc001dzu.2	-	2	1147	c.651C>T	c.(649-651)TCC>TCT	p.S217S	KCNA2_uc009wfv.1_Silent_p.S217S|KCNA2_uc009wfw.2_Silent_p.S217S	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	217						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		GGTCTGTGAAGGAAGTGGACT	0.502													232	400					0	0	0.000781405	0	0
LRIG2	9860	broad.mit.edu	37	1	113661932	113661932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:113661932C>T	uc001edf.1	+	17	2956	c.2758C>T	c.(2758-2760)CCA>TCA	p.P920S	LRIG2_uc009wgn.1_Missense_Mutation_p.P817S	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	920	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		AGAATACTGTCCATACACCTA	0.448													160	237					0	0	0.000781405	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114454578	114454578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:114454578C>T	uc001eeg.2	+	4	1535	c.1364C>T	c.(1363-1365)TCC>TTC	p.S455F	DCLRE1B_uc001eeh.2_Intron|DCLRE1B_uc001eei.2_Missense_Mutation_p.S329F	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	455					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGTTTAGGGTCCCCCTTGGTA	0.517								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					378	545					0	0	0.000781405	0	0
SYT6	148281	broad.mit.edu	37	1	114682401	114682401	+	Silent	SNP	C	T	T	rs139973136	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:114682401C>T	uc001eev.2	-	2	343	c.93G>A	c.(91-93)GCG>GCA	p.A31A		NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	116	Cytoplasmic (Potential).				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCAGCTTGTCCGCCATGTTGC	0.617													246	419					0	0	0.000781405	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256530	+	Missense_Mutation	DNP	TG	AA	AA	rs11554290		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:115256529_115256530TG>AA	uc009wgu.2	-	3	435_436	c.181_182CA>TT	c.(181-183)CAA>TTA	p.Q61L		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGTA	0.46	Q61R(TT2609C02_THYROID)|Q61K(TYKNU_OVARY)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(KU1919_URINARY_TRACT)|Q61K(HS936T_SKIN)|Q61R(SW1271_LUNG)|Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(NCIH1299_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(NCIH2347_LUNG)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61K(HCC15_LUNG)|Q61L(MHHES1_BONE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(HS944T_SKIN)|Q61L(C3A_LIVER)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HT1080_SOFT_TISSUE)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			315	566					0	0	6.4e-05	0	0
SPAG17	200162	broad.mit.edu	37	1	118534050	118534050	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:118534050G>A	uc001ehk.2	-	37	5531	c.5463C>T	c.(5461-5463)CTC>CTT	p.L1821L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1821						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TAACCAGCTTGAGGAGATCAG	0.363													10	16					0	0	0.000673444	0	0
SPAG17	200162	broad.mit.edu	37	1	118548078	118548079	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:118548078_118548079CC>TT	uc001ehk.2	-	32	4802_4803	c.4734_4735GG>AA	c.(4732-4737)GAGGTT>GAAATT	p.V1579I		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1579						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TCACAGATAACCTCTGAAGTAT	0.455													15	31					0	0	6.4e-05	0	0
ZNF697	90874	broad.mit.edu	37	1	120165658	120165658	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:120165658G>A	uc001ehy.1	-	3	1422	c.1308C>T	c.(1306-1308)CCC>CCT	p.P436P		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	436					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		GGCACACGTAGGGCCGCTCAC	0.667													32	72					0	0	0.000953801	0	0
HMGCS2	3158	broad.mit.edu	37	1	120300032	120300032	+	Missense_Mutation	SNP	C	T	T	rs144103604		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:120300032C>T	uc001eid.2	-	5	931	c.880G>A	c.(880-882)GAT>AAT	p.D294N	HMGCS2_uc010oxj.1_Missense_Mutation_p.D252N|HMGCS2_uc001eie.2_Missense_Mutation_p.D202N	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	294					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TACTGTAAATCGTCAAGGGTG	0.512													196	289					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120459123	120459123	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:120459123G>T	uc001eik.2	-	34	6478	c.6222C>A	c.(6220-6222)ACC>ACA	p.T2074T		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2074	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGTCAACACGGTGCCTGGAG	0.557			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				12	942					0.000274275	0.00189323	0.000274275	1	0
NOTCH2	4853	broad.mit.edu	37	1	120471799	120471799	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:120471799C>A	uc001eik.2	-	23	3948	c.3692G>T	c.(3691-3693)CGG>CTG	p.R1231L		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1231	EGF-like 32; calcium-binding (Potential).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATGGGGACCCCGGGCACAGTC	0.507			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				12	922					0.000978159	0.00669854	0.000978159	1	0
NOTCH2	4853	broad.mit.edu	37	1	120539837	120539837	+	Silent	SNP	T	C	C	rs141216934	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:120539837T>C	uc001eik.2	-	4	790	c.534A>G	c.(532-534)AAA>AAG	p.K178K	NOTCH2_uc001eil.2_Silent_p.K178K|NOTCH2_uc001eim.3_Silent_p.K95K	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	178	Extracellular (Potential).|EGF-like 4.				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAGTCTCACATTTCTGCCCTG	0.557			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				6	411					0	0	0.000978159	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144874789	144874789	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:144874789G>C	uc001elw.3	-	30	5110	c.4819C>G	c.(4819-4821)CCC>GCC	p.P1607A	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.P1563A|PDE4DIP_uc001elv.3_Missense_Mutation_p.P614A	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1607	NBPF.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GTGCTGCTGGGAGAGCGGTGG	0.547			T	PDGFRB	MPD								3	235					0	0	6.4e-05	0	0
GPR89B	51463	broad.mit.edu	37	1	147400670	147400670	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:147400670C>A	uc001epv.3	+	1	165	c.21C>A	c.(19-21)TCC>TCA	p.S7S	GPR89B_uc010ozs.1_Silent_p.S7S|GPR89B_uc010ozt.1_5'UTR|GPR89B_uc010ozu.1_5'UTR|GPR89B_uc001epw.3_5'UTR|GPR89B_uc010ozv.1_5'Flank	NM_016334	NP_057418	B7ZAQ6	GPHRA_HUMAN	G protein-coupled receptor 89B	7	Helical; (Potential).				intracellular pH reduction|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport	Golgi cisterna membrane|Golgi-associated vesicle membrane|integral to membrane	signal transducer activity|voltage-gated anion channel activity				0	all_hematologic(923;0.0276)					TGATCGACTCCAGCATCATGA	0.662													12	826					3.45872e-05	0.000240338	0.000422831	1	0
SV2A	9900	broad.mit.edu	37	1	149884980	149884980	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:149884980T>C	uc001etg.2	-	2	904	c.413A>G	c.(412-414)GAG>GGG	p.E138G	SV2A_uc001eth.2_Missense_Mutation_p.E138G	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	138	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TCGTTGTGCCTCCCCCCGGCC	0.637													5	636					0	0	0.000274275	0	0
PLEKHO1	51177	broad.mit.edu	37	1	150131106	150131106	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:150131106C>T	uc001ett.2	+	6	896	c.618C>T	c.(616-618)AGC>AGT	p.S206S	PLEKHO1_uc001etr.2_Silent_p.S34S|PLEKHO1_uc001ets.2_Silent_p.S23S|PLEKHO1_uc001etu.2_Silent_p.S34S	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	206	Interaction with ATM, CKIP, IFP35 and NMI.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTGCTGAGAGCTTTCGGGTTG	0.617													411	330					0	0	0.000781405	0	0
ECM1	1893	broad.mit.edu	37	1	150484887	150484887	+	Silent	SNP	C	T	T	rs143543113		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:150484887C>T	uc001eus.2	+	8	1342	c.1143C>T	c.(1141-1143)CAC>CAT	p.H381H	ECM1_uc001eut.2_Silent_p.H256H|ECM1_uc001euu.2_Silent_p.H410H|ECM1_uc001euv.2_Silent_p.H408H|ECM1_uc009wlu.2_Silent_p.H141H	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	381	2 X approximate repeats.|2.				angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CCCACCACCACTTGTGTTGCC	0.567													210	648					0	0	0.000781405	0	0
FAM63A	55793	broad.mit.edu	37	1	150970583	150970583	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:150970583G>T	uc001ewf.2	-	9	2832	c.1148C>A	c.(1147-1149)CCA>CAA	p.P383Q	FAM63A_uc001ewc.2_Missense_Mutation_p.P241Q|FAM63A_uc010pcm.1_Missense_Mutation_p.P288Q|FAM63A_uc001ewd.2_Missense_Mutation_p.P241Q|FAM63A_uc001ewe.2_Missense_Mutation_p.P217Q|FAM63A_uc010pcn.1_Missense_Mutation_p.P431Q|FAM63A_uc001ewg.2_Missense_Mutation_p.P383Q	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	383							protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTGCGTTTCTGGGGAGCCACT	0.522													10	914					0.00116845	0.00799463	0.00116845	1	0
FAM63A	55793	broad.mit.edu	37	1	150972934	150972934	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:150972934T>C	uc001ewf.2	-	6	2418	c.734A>G	c.(733-735)CAG>CGG	p.Q245R	FAM63A_uc001ewc.2_Missense_Mutation_p.Q103R|FAM63A_uc010pcm.1_Missense_Mutation_p.Q150R|FAM63A_uc001ewd.2_Missense_Mutation_p.Q103R|FAM63A_uc001ewe.2_Missense_Mutation_p.Q79R|FAM63A_uc010pcn.1_Missense_Mutation_p.Q293R|FAM63A_uc001ewg.2_Missense_Mutation_p.Q245R	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	245							protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CACCCTCACCTGTGGATCAAC	0.517													5	857					0	0	8.12818e-05	0	0
BNIPL	149428	broad.mit.edu	37	1	151015443	151015444	+	Missense_Mutation	DNP	CG	AT	AT	rs151319763	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151015443_151015444CG>AT	uc001ewl.2	+	5	618_619	c.445_446CG>AT	c.(445-447)CGG>ATG	p.R149M	BNIPL_uc009wmi.2_Missense_Mutation_p.R67M|BNIPL_uc009wmj.2_RNA	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	149					apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGAACTACCCCGGGCAGAGGGT	0.416													10	875					0	0	6.4e-05	0	0
SEMA6C	10500	broad.mit.edu	37	1	151115037	151115037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151115037G>A	uc001ewu.2	-	3	361	c.61C>T	c.(61-63)CAT>TAT	p.H21Y	SEMA6C_uc001ewv.2_Missense_Mutation_p.H21Y|SEMA6C_uc001eww.2_Missense_Mutation_p.H21Y|SEMA6C_uc010pcq.1_Missense_Mutation_p.H21Y|SEMA6C_uc009wml.1_Intron	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	21						integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCCTGAGTATGGGGAAGTGAG	0.622													417	388					0	0	0.000781405	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151214646	151214646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151214646C>T	uc001exj.2	+	13	1863	c.1411C>T	c.(1411-1413)CGG>TGG	p.R471W	PIP5K1A_uc001exi.2_Missense_Mutation_p.R458W|PIP5K1A_uc010pcu.1_Missense_Mutation_p.R431W|PIP5K1A_uc001exk.2_Intron|PIP5K1A_uc010pcv.1_Intron	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	471					phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATCTTTCTCTCGGCGAGCAGG	0.502													245	618					0	0	0.000781405	0	0
ZNF687	57592	broad.mit.edu	37	1	151260472	151260472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151260472C>T	uc001exq.2	+	2	1803	c.1705C>T	c.(1705-1707)CGC>TGC	p.R569C	ZNF687_uc001exp.1_Missense_Mutation_p.R578C|ZNF687_uc009wmo.2_Missense_Mutation_p.R569C|ZNF687_uc009wmp.2_Missense_Mutation_p.R569C	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	569					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CTGCGCCCGCCGCCTGGTCTT	0.592													219	675					0	0	0.000781405	0	0
RFX5	5993	broad.mit.edu	37	1	151315115	151315115	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151315115C>A	uc001exv.1	-	11	1612	c.1398G>T	c.(1396-1398)CGG>CGT	p.R466R	RFX5_uc001exw.1_Silent_p.R466R|RFX5_uc009wmr.1_Silent_p.R466R|RFX5_uc010pcx.1_Silent_p.R426R	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	466						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GAGGGCGCCCCCGTTTCCTTT	0.532													514	429					1.59074e-215	1.12901e-214	0.000781405	1	0
S100A10	6281	broad.mit.edu	37	1	151958702	151958702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151958702G>A	uc001ezl.2	-	2	513	c.5C>T	c.(4-6)CCA>CTA	p.P2L		NM_002966	NP_002957	P60903	S10AA_HUMAN	S100 calcium binding protein A10	2					signal transduction		calcium ion binding|receptor binding				0	Melanoma(130;0.0648)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CATTTGAGATGGCATTTTGGT	0.378													403	478					0	0	0.000781405	0	0
S100A10	6281	broad.mit.edu	37	1	151958704	151958704	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:151958704C>A	uc001ezl.2	-	2	511	c.3G>T	c.(1-3)ATG>ATT	p.M1I		NM_002966	NP_002957	P60903	S10AA_HUMAN	S100 calcium binding protein A10	1					signal transduction		calcium ion binding|receptor binding				0	Melanoma(130;0.0648)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTTGAGATGGCATTTTGGTGT	0.373													403	476					4.70956e-140	3.34102e-139	0.000781405	1	0
HRNR	388697	broad.mit.edu	37	1	152191815	152191815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:152191815C>T	uc001ezt.1	-	3	2366	c.2290G>A	c.(2290-2292)GGC>AGC	p.G764S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	764	8.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGGCCGTGGCCCGAAGATTGA	0.592													460	352					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152325726	152325726	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:152325726C>T	uc001ezw.3	-	3	4609	c.4536G>A	c.(4534-4536)GGG>GGA	p.G1512G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1512							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGCGAGCCCCCTGAGTGCA	0.498													147	128					0	0	0.000781405	0	0
LCE5A	254910	broad.mit.edu	37	1	152484087	152484087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:152484087C>T	uc001ezy.2	+	2	253	c.77C>T	c.(76-78)CCT>CTT	p.P26L	CRCT1_uc001ezz.2_5'Flank	NM_178438	NP_848525	Q5TCM9	LCE5A_HUMAN	late cornified envelope 5A	26	Cys-rich.				keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			aagtgtactcctaagtgtcct	0.458													291	216					0	0	0.000781405	0	0
LCE1E	353135	broad.mit.edu	37	1	152759908	152759908	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:152759908A>G	uc001fan.2	+	2	186	c.133A>G	c.(133-135)AGT>GGT	p.S45G		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	45	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCTGCTGCAGTGTCAGCTC	0.557													16	848					0	0	0.000308642	0	0
NPR1	4881	broad.mit.edu	37	1	153653110	153653110	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:153653110C>T	uc001fcs.3	+	2	1276	c.855C>T	c.(853-855)GGC>GGT	p.G285G	NPR1_uc010pdz.1_Silent_p.G31G	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	285	Extracellular (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GTGGACAGGGCCCTGCTCCCC	0.607													199	473					0	0	0.000781405	0	0
AQP10	89872	broad.mit.edu	37	1	154295777	154295777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:154295777C>T	uc001feu.2	+	4	471	c.431C>T	c.(430-432)TCC>TTC	p.S144F	AQP10_uc001fev.2_Missense_Mutation_p.S144F|ATP8B2_uc001few.2_5'Flank	NM_080429	NP_536354	Q96PS8	AQP10_HUMAN	aquaporin 10	144	Extracellular (Potential).				response to toxin|transmembrane transport|water transport	integral to membrane|plasma membrane	transporter activity			central_nervous_system(1)	1	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GAGACAGCCTCCATTTTTGCC	0.547													495	431					0	0	0.000781405	0	0
FDPS	2224	broad.mit.edu	37	1	155279920	155279920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:155279920C>T	uc001fkc.2	+	3	482	c.263C>T	c.(262-264)TCC>TTC	p.S88F	RAG1AP1_uc010pey.1_Intron|FDPS_uc001fkd.2_Missense_Mutation_p.S22F|FDPS_uc001fke.2_Missense_Mutation_p.S88F|FDPS_uc001fkf.2_Missense_Mutation_p.S22F	NM_002004	NP_001995	P14324	FPPS_HUMAN	farnesyl diphosphate synthase isoform a	88					cholesterol biosynthetic process|interspecies interaction between organisms|isoprenoid biosynthetic process	cytosol|nucleus	dimethylallyltranstransferase activity|geranyltranstransferase activity|metal ion binding				0	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;2.03e-10)|all cancers(21;5.23e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)		Alendronate(DB00630)|Ibandronate(DB00710)|Pamidronate(DB00282)|Risedronate(DB00884)|Zoledronate(DB00399)	CAGCACTTCTCCCAGATCGTT	0.502													189	511					0	0	0.000781405	0	0
KIAA0907	22889	broad.mit.edu	37	1	155887393	155887393	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:155887393T>G	uc001fmi.1	-	11	1361	c.1337A>C	c.(1336-1338)CAG>CCG	p.Q446P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q446P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q303P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	446	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggctgggg	0.448													29	170					0	0	0.000680045	0	0
KIAA0907	22889	broad.mit.edu	37	1	155887399	155887399	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:155887399T>G	uc001fmi.1	-	11	1355	c.1331A>C	c.(1330-1332)CAG>CCG	p.Q444P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q444P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q301P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	444	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggGCCAGC	0.443													13	138					0	0	0.000958276	0	0
SMG5	23381	broad.mit.edu	37	1	156252434	156252434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:156252434G>A	uc001foc.3	-	1	187	c.38C>T	c.(37-39)CCC>CTC	p.P13L	TMEM79_uc010phi.1_5'Flank|TMEM79_uc001fod.2_5'Flank|TMEM79_uc009wrw.2_5'Flank	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	13					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					TTTTGCTTCGGGCTCGCTGCT	0.552													199	179					0	0	0.000781405	0	0
IQGAP3	128239	broad.mit.edu	37	1	156533598	156533598	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:156533598C>T	uc001fpf.2	-	6	531	c.456G>A	c.(454-456)CTG>CTA	p.L152L	IQGAP3_uc009wsb.1_Silent_p.L109L	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	152					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGGCCAATCCCAGCCGGAAGA	0.537													46	166					0	0	0.000781405	0	0
INSRR	3645	broad.mit.edu	37	1	156815088	156815088	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:156815088C>T	uc010pht.1	-	12	2471	c.2217G>A	c.(2215-2217)AGG>AGA	p.R739R	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	739					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCCCTGAGTCCCTGGGGAGAG	0.687													170	138					0	0	0.000781405	0	0
ETV3	2117	broad.mit.edu	37	1	157105500	157105501	+	Splice_Site	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:157105500_157105501CC>AA	uc001fqr.2	-	3	336	c.47_splice	c.e3-1	p.G16_splice	ETV3_uc001fqt.2_Splice_Site_p.G16_splice	NM_001145312	NP_001138784	P41162	ETV3_HUMAN	ets variant gene 3 isoform 1								sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(266;0.158)	Prostate(1639;0.174)				AAACTGATACCCTTTCATGTGA	0.495													14	825					0	0	6.4e-05	0	0
FCRL4	83417	broad.mit.edu	37	1	157548633	157548634	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:157548633_157548634GG>AA	uc001fqw.2	-	9	1422_1423	c.1286_1287CC>TT	c.(1285-1287)CCC>CTT	p.P429L	FCRL4_uc010phy.1_Intron	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	429	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GGCCTGGAGCGGGAGGGAGCCT	0.545													20	10					0	0	6.4e-05	0	0
CD1D	912	broad.mit.edu	37	1	158152078	158152078	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:158152078G>A	uc001frr.2	+	4	1084	c.585G>A	c.(583-585)GGG>GGA	p.G195G	CD1D_uc009wsr.1_Silent_p.G195G|CD1D_uc009wss.2_Silent_p.G195G|CD1D_uc009wst.1_Silent_p.G91G	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	195	Ig-like.|Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					TTGAGTCAGGGAAGTCGGAAC	0.542													239	704					0	0	0.000781405	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577016	158577016	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:158577016A>T	uc010pio.1	+	1	788	c.788A>T	c.(787-789)AAA>ATA	p.K263I		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CTGAGGCCCAAAGCCAGCTAC	0.488													67	61					0	0	0.000781405	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577087	158577087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:158577087C>T	uc010pio.1	+	1	859	c.859C>T	c.(859-861)CCC>TCC	p.P287S		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CCTCCTTAATCCCATTGTTTA	0.473													70	80					0	0	0.000781405	0	0
OR6K2	81448	broad.mit.edu	37	1	158669637	158669637	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:158669637A>C	uc001fsu.1	-	1	806	c.806T>G	c.(805-807)TTG>TGG	p.L269W		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ATCCCAGAACAAAGAGTAGGT	0.438													29	26					0	0	0.00127121	0	0
PYHIN1	149628	broad.mit.edu	37	1	158946490	158946490	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:158946490G>A	uc001ftb.2	+	9	1730	c.1485_splice	c.e9-1		PYHIN1_uc001ftc.2_Splice_Site|PYHIN1_uc001ftd.2_Splice_Site_p.V454_splice|PYHIN1_uc001fte.2_Splice_Site_p.V445_splice	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1						cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					TATGCTTCAAGGTCACCAAGG	0.413													20	24					0	0	0.00047179	0	0
DARC	2532	broad.mit.edu	37	1	159175422	159175422	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:159175422T>G	uc001fto.2	+	2	433	c.193T>G	c.(193-195)TTC>GTC	p.F65V	DARC_uc001ftp.3_Missense_Mutation_p.F67V	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	65	Helical; Name=1; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					ACTGCCCTTCTTCATCCTCAC	0.562													30	711					0	0	0.00127121	0	0
CRP	1401	broad.mit.edu	37	1	159683618	159683618	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:159683618G>A	uc001ftw.2	-	2	476	c.372C>T	c.(370-372)ATC>ATT	p.I124I	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	124	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	AGAACTCCACGATCCCTGAGG	0.522													221	603					0	0	0.000781405	0	0
DCAF8	50717	broad.mit.edu	37	1	160209837	160209838	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:160209837_160209838GG>AA	uc001fvo.2	-	4	684_685	c.372_373CC>TT	c.(370-375)AACCGT>AATTGT	p.R125C	DCAF8_uc001fvn.2_Missense_Mutation_p.R125C|DCAF8_uc009wth.2_Missense_Mutation_p.R125C|DCAF8_uc010pjb.1_Missense_Mutation_p.R125C|DCAF8_uc010pjc.1_Missense_Mutation_p.R279C|DCAF8_uc001fvq.3_Missense_Mutation_p.R125C|DCAF8_uc001fvp.3_Missense_Mutation_p.R125C|uc010pjd.1_3'UTR	NM_015726	NP_056541	Q5TAQ9	DCAF8_HUMAN	DDB1 and CUL4 associated factor 8	125						CUL4 RING ubiquitin ligase complex	protein binding			skin(2)	2						TCCTGGTCACGGTTAGCCCGCT	0.49													116	82					0	0	6.4e-05	0	0
COPA	1314	broad.mit.edu	37	1	160260464	160260464	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:160260464G>A	uc009wti.2	-	32	3827	c.3433C>T	c.(3433-3435)CTG>TTG	p.L1145L	COPA_uc001fvv.3_Silent_p.L1154L	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	1145					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGGCAGACAGGATTTTTCGG	0.493													151	492					0	0	0.000781405	0	0
CD84	8832	broad.mit.edu	37	1	160535312	160535312	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:160535312C>T	uc001fwh.3	-	2	294	c.270G>A	c.(268-270)CCG>CCA	p.P90P	CD84_uc001fwf.3_Silent_p.P90P|CD84_uc001fwg.3_Silent_p.P90P|CD84_uc009wtn.2_Silent_p.P90P|CD84_uc001fwi.3_Intron|CD84_uc001fwj.2_Silent_p.P90P|CD84_uc001fwk.2_Silent_p.P90P	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	90	Extracellular (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GATTGTAGTTCGGACCTAAGG	0.458													72	85					0	0	0.000781405	0	0
ITLN2	142683	broad.mit.edu	37	1	160920967	160920967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:160920967G>A	uc001fxd.2	-	4	365	c.307C>T	c.(307-309)CGT>TGT	p.R103C	ITLN2_uc009wts.2_Missense_Mutation_p.R102C|ITLN2_uc010pju.1_Missense_Mutation_p.R20C	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	103	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CACTTCCCACGCATGTCATTC	0.587													72	232					0	0	0.000781405	0	0
PVRL4	81607	broad.mit.edu	37	1	161046224	161046224	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:161046224G>A	uc001fxo.2	-	4	1071	c.772C>T	c.(772-774)CTG>TTG	p.L258L	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_5'UTR	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	258	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			ATGTGCCACAGATTTTGGTCT	0.547													538	394					0	0	0.000781405	0	0
NUF2	83540	broad.mit.edu	37	1	163298690	163298690	+	Silent	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:163298690A>T	uc001gcq.1	+	5	630	c.330A>T	c.(328-330)CTA>CTT	p.L110L	NUF2_uc001gcp.2_Silent_p.L110L|NUF2_uc001gcr.1_Silent_p.L110L|NUF2_uc009wvc.1_Silent_p.L110L	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	110	Interaction with the N-terminus of NDC80.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					CTGATATTCTATGTCCAAGTA	0.328													182	139					0	0	0.000781405	0	0
PBX1	5087	broad.mit.edu	37	1	164781365	164781365	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:164781365C>G	uc001gct.2	+	6	1234	c.976C>G	c.(976-978)CCC>GCC	p.P326A	PBX1_uc010pku.1_Missense_Mutation_p.P326A|PBX1_uc010pkv.1_Missense_Mutation_p.P243A|PBX1_uc001gcs.2_Missense_Mutation_p.P326A|PBX1_uc010pkw.1_Missense_Mutation_p.P216A	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	326					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						AGCTAACTCGCCCTCAACTCC	0.443			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								3	122					0	0	6.4e-05	0	0
LMX1A	4009	broad.mit.edu	37	1	165173235	165173235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:165173235G>A	uc001gcy.1	-	8	1252	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	LMX1A_uc001gcz.1_Missense_Mutation_p.S344F|LMX1A_uc001gcw.1_Missense_Mutation_p.S62F|LMX1A_uc001gcx.1_Missense_Mutation_p.S95F	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	344						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					GTTACTGAGGGAGGTGTCGTC	0.517													68	88					0	0	0.000781405	0	0
ILDR2	387597	broad.mit.edu	37	1	166926004	166926004	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:166926004C>T	uc001gdx.1	-	3	521	c.465G>A	c.(463-465)GGG>GGA	p.G155G		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	155	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CCTCATTTTTCCCCTCCAGGT	0.438													246	209					0	0	0.000781405	0	0
GPR161	23432	broad.mit.edu	37	1	168065809	168065809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:168065809G>A	uc001gfc.2	-	5	1350	c.1036C>T	c.(1036-1038)CGG>TGG	p.R346W	GPR161_uc001gfb.2_Missense_Mutation_p.R214W|GPR161_uc010pll.1_Missense_Mutation_p.R256W|GPR161_uc010plm.1_Missense_Mutation_p.R232W|GPR161_uc009wvo.2_Missense_Mutation_p.R363W|GPR161_uc001gfd.2_Missense_Mutation_p.R346W|GPR161_uc010pln.1_Missense_Mutation_p.R366W|GPR161_uc001gfe.1_Missense_Mutation_p.R346W	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	346	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					AATGGTTCCCGATAATACCGG	0.527													245	205					0	0	0.000781405	0	0
NME7	29922	broad.mit.edu	37	1	169267912	169267912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:169267912C>T	uc001gfu.2	-	6	768	c.530G>A	c.(529-531)GGA>GAA	p.G177E	NME7_uc010plq.1_RNA|NME7_uc001gft.2_Missense_Mutation_p.G141E|NME7_uc001gfv.1_Missense_Mutation_p.G177E	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	177					CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					GTTTGCAGGTCCCAGCAGTCT	0.443													25	66					0	0	0.000375601	0	0
F5	2153	broad.mit.edu	37	1	169484718	169484718	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:169484718C>T	uc001ggg.1	-	24	6637	c.6492G>A	c.(6490-6492)TGG>TGA	p.W2164*		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	2164	F5/8 type C 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGTATGGTTTCCATTCCACTC	0.438													32	106					0	0	0.000692331	0	0
MYOC	4653	broad.mit.edu	37	1	171605184	171605184	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:171605184G>C	uc001ghu.2	-	3	1418	c.1396C>G	c.(1396-1398)CCA>GCA	p.P466A	MYOC_uc010pmk.1_Missense_Mutation_p.P408A	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	466	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					TTCTTGAATGGGATGGTCAGG	0.493													4	342					0	0	0.00024832	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552678	173552678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:173552678G>A	uc001giz.2	-	6	1030	c.607C>T	c.(607-609)CGG>TGG	p.R203W	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	203					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CTGTTGCCCCGAAAATTTCCA	0.284													29	107					0	0	0.000491102	0	0
SLC9A11	284525	broad.mit.edu	37	1	173556818	173556818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:173556818G>A	uc001giz.2	-	5	932	c.509C>T	c.(508-510)TCA>TTA	p.S170L	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	170					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AGTTTTTAGTGAATTCACAGA	0.299													24	55					0	0	0.000720815	0	0
ANKRD45	339416	broad.mit.edu	37	1	173616142	173616142	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:173616142G>A	uc001gja.1	-	3	400	c.339C>T	c.(337-339)CTC>CTT	p.L113L		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	129	ANK 2.										0						CACAATGTAAGAGTGTGTACC	0.408													44	22					0	0	0.000781405	0	0
KLHL20	27252	broad.mit.edu	37	1	173703100	173703100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:173703100C>T	uc001gjc.2	+	3	451	c.272C>T	c.(271-273)CCC>CTC	p.P91L	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_Missense_Mutation_p.P73L|KLHL20_uc001gjd.2_Missense_Mutation_p.P91L	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	91	BTB.				cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						GCCTGTAGTCCCTACTTCCGA	0.478													109	74					0	0	0.000781405	0	0
TNN	63923	broad.mit.edu	37	1	175046873	175046873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:175046873G>A	uc001gkl.1	+	2	432	c.319G>A	c.(319-321)GAC>AAC	p.D107N	TNN_uc010pmx.1_Missense_Mutation_p.D107N	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	107					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAGTGTCCAGGACCTCCTGGC	0.607													265	261					0	0	0.000781405	0	0
TNN	63923	broad.mit.edu	37	1	175087881	175087881	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:175087881G>A	uc001gkl.1	+	11	2684	c.2571G>A	c.(2569-2571)CCG>CCA	p.P857P		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	857	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCTGAGGCCGGGCATGGAGT	0.587													155	118					0	0	0.000781405	0	0
TNR	7143	broad.mit.edu	37	1	175334168	175334168	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:175334168G>A	uc001gkp.1	-	10	2646	c.2565C>T	c.(2563-2565)CCC>CCT	p.P855P	TNR_uc009wwu.1_Silent_p.P855P	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	855	Fibronectin type-III 6.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGCCCACAATGGGCTCAGAGG	0.507													29	36					0	0	0.00106085	0	0
ASTN1	460	broad.mit.edu	37	1	176927615	176927615	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:176927615G>A	uc001glc.2	-	10	1814	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	ASTN1_uc001glb.1_Silent_p.F534F|ASTN1_uc001gld.1_Silent_p.F534F|ASTN1_uc009wwx.1_Silent_p.F534F	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	542					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GAGTGTAGGTGAATCTGCAGG	0.552													12	30					0	0	0.000978159	0	0
FAM5B	57795	broad.mit.edu	37	1	177225096	177225096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:177225096G>A	uc001glf.2	+	3	623	c.311G>A	c.(310-312)AGG>AAG	p.R104K	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_5'Flank	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	104						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTCTGGAAAGGAAGGACTTC	0.493											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	91					0	0	0.000229342	0	0
RASAL2	9462	broad.mit.edu	37	1	178427384	178427385	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:178427384_178427385CC>TT	uc001glr.2	+	12	2659_2660	c.2534_2535CC>TT	c.(2533-2535)TCC>TTT	p.S845F	RASAL2_uc001glq.2_Missense_Mutation_p.S986F|RASAL2_uc009wxc.2_Missense_Mutation_p.S359F	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	845					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GAGGACTTCTCCAGGCGGCACA	0.51													161	111					0	0	6.4e-05	0	0
C1orf49	84066	broad.mit.edu	37	1	178491476	178491476	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:178491476G>A	uc001glt.1	+	9	715	c.603G>A	c.(601-603)GAG>GAA	p.E201E	C1orf49_uc001glu.1_3'UTR|C1orf49_uc001glv.1_Intron|C1orf49_uc001glw.1_Intron	NM_032126	NP_115502	Q5T0J7	CA049_HUMAN	hypothetical protein LOC84066	201						microtubule cytoskeleton					0						ttccttcagaggcctcaggcc	0.1													26	62					0	0	0.00106085	0	0
IER5	51278	broad.mit.edu	37	1	181058213	181058213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:181058213G>A	uc001got.3	+	1	576	c.175G>A	c.(175-177)GGT>AGT	p.G59S		NM_016545	NP_057629	Q5VY09	IER5_HUMAN	immediate early response 5	59										pancreas(1)	1						CTACCTGGCCGGTCCCGCTGG	0.502													36	66					0	0	0.00058488	0	0
C1orf14	81626	broad.mit.edu	37	1	182922015	182922015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:182922015G>A	uc001gpu.2	-	1	539	c.254C>T	c.(253-255)GCG>GTG	p.A85V	C1orf14_uc001gpv.2_5'UTR|C1orf14_uc010pnz.1_5'UTR|C1orf14_uc001gpw.2_5'UTR	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	157	Poly-Ala.										0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		cgccgccgccgccgccTCTCC	0.652													39	100					0	0	0.00128727	0	0
NCF2	4688	broad.mit.edu	37	1	183543646	183543646	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:183543646G>A	uc001gqj.3	-	4	752	c.477C>T	c.(475-477)ATC>ATT	p.I159I	NCF2_uc010pod.1_Intron|NCF2_uc010poe.1_Intron|NCF2_uc001gqk.3_Silent_p.I159I	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	159					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						TCGCCTTGTCGATTTTGGAAT	0.463													415	318					0	0	0.000781405	0	0
FAM129A	116496	broad.mit.edu	37	1	184801032	184801032	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:184801032C>T	uc001gra.2	-	6	860	c.666G>A	c.(664-666)CAG>CAA	p.Q222Q	FAM129A_uc001grb.1_Silent_p.Q20Q|FAM129A_uc009wyh.1_Intron|FAM129A_uc009wyi.1_Silent_p.Q20Q	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	222					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GACCCTTCTCCTGTCGGAAGA	0.408													40	107					0	0	0.000781405	0	0
C1orf26	54823	broad.mit.edu	37	1	185175888	185175888	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:185175888C>T	uc001grg.3	+	13	2079	c.1965C>T	c.(1963-1965)CTC>CTT	p.L655L	C1orf26_uc001grh.3_Silent_p.L655L	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	655											0						ACAAAAATCTCCGTAAAGGTA	0.303													31	30					0	0	0.000491102	0	0
HMCN1	83872	broad.mit.edu	37	1	185894182	185894182	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:185894182C>A	uc001grq.1	+	9	1518	c.1289C>A	c.(1288-1290)GCT>GAT	p.A430D		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	430					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TTCCTAGATGCTCCCAAAGTT	0.373													20	69					8.00594e-06	5.57806e-05	0.000958276	1	0
HMCN1	83872	broad.mit.edu	37	1	186052055	186052055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:186052055C>T	uc001grq.1	+	57	9075	c.8846C>T	c.(8845-8847)GCT>GTT	p.A2949V		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2949	Ig-like C2-type 27.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GAGAACACAGCTGGGAGTGCC	0.348													6	11					0	0	0.00116845	0	0
HMCN1	83872	broad.mit.edu	37	1	186107027	186107027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:186107027C>T	uc001grq.1	+	89	14076	c.13847C>T	c.(13846-13848)CCA>CTA	p.P4616L	HMCN1_uc001grs.1_Missense_Mutation_p.P185L	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4616	TSP type-1 2.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGCAATAATCCATCAGTTCAG	0.493													31	63					0	0	0.001512	0	0
PRG4	10216	broad.mit.edu	37	1	186276229	186276229	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:186276229A>G	uc001gru.3	+	7	1429	c.1378A>G	c.(1378-1380)ACA>GCA	p.T460A	PRG4_uc001grt.3_Missense_Mutation_p.T419A|PRG4_uc009wyl.2_Missense_Mutation_p.T367A|PRG4_uc009wym.2_Missense_Mutation_p.T326A|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	460	15.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CAAGGAGCCTACACCCACCAC	0.657													9	621					0	0	0.000308642	0	0
PRG4	10216	broad.mit.edu	37	1	186276495	186276495	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:186276495T>C	uc001gru.3	+	7	1695	c.1644T>C	c.(1642-1644)ACT>ACC	p.T548T	PRG4_uc001grt.3_Silent_p.T507T|PRG4_uc009wyl.2_Silent_p.T455T|PRG4_uc009wym.2_Silent_p.T414T|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	548	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|26; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CACCCACCACTCCCAAGGAGC	0.642													10	555					0	0	0.000814825	0	0
PRG4	10216	broad.mit.edu	37	1	186276588	186276588	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:186276588T>C	uc001gru.3	+	7	1788	c.1737T>C	c.(1735-1737)ACT>ACC	p.T579T	PRG4_uc001grt.3_Silent_p.T538T|PRG4_uc009wyl.2_Silent_p.T486T|PRG4_uc009wym.2_Silent_p.T445T|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	579	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|30.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTGCCCCAACTACCCCCAAGG	0.647													24	415					0	0	0.00106085	0	0
PRG4	10216	broad.mit.edu	37	1	186276981	186276981	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:186276981A>G	uc001gru.3	+	7	2181	c.2130A>G	c.(2128-2130)AAA>AAG	p.K710K	PRG4_uc001grt.3_Silent_p.K669K|PRG4_uc009wyl.2_Silent_p.K617K|PRG4_uc009wym.2_Silent_p.K576K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	710	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|43; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTACCCCTAAAGGGACTGCTC	0.582													8	938					0	0	8.12818e-05	0	0
KCNT2	343450	broad.mit.edu	37	1	196227391	196227391	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:196227391T>C	uc001gtd.1	-	26	3204	c.3144A>G	c.(3142-3144)GAA>GAG	p.E1048E	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.E981E|KCNT2_uc001gtf.1_Silent_p.E1024E|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Silent_p.E552E	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1048	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GCTCTTGTCTTTCTGACCTCC	0.428													13	16					0	0	0.000151284	0	0
CFHR3	10878	broad.mit.edu	37	1	196757491	196757491	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:196757491T>C	uc001gtl.2	+	4	663	c.576T>C	c.(574-576)TGT>TGC	p.C192C	CFHR3_uc001gtk.2_Silent_p.C192C|CFHR3_uc010poy.1_Intron|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	192	Sushi 3.					extracellular space					0						CAATTACATGTTTGCAAAATG	0.318													59	110					0	0	0.000781405	0	0
CFHR4	10877	broad.mit.edu	37	1	196884135	196884135	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:196884135C>T	uc001gto.2	+	5	735	c.666C>T	c.(664-666)ACC>ACT	p.T222T	CFHR4_uc009wyy.2_Silent_p.T468T|CFHR4_uc001gtp.2_Silent_p.T469T	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	222	Sushi 4.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						ATGGTGATACCACCTCCTTTC	0.378													54	49					0	0	0.000781405	0	0
F13B	2165	broad.mit.edu	37	1	197029555	197029555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:197029555C>T	uc001gtt.1	-	5	790	c.746G>A	c.(745-747)GGA>GAA	p.G249E		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	249	Sushi 4.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TAAATCAGATCCACTTAGATA	0.308													32	26					0	0	0.000692331	0	0
ASPM	259266	broad.mit.edu	37	1	197071299	197071299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:197071299G>A	uc001gtu.2	-	18	7339	c.7082C>T	c.(7081-7083)TCC>TTC	p.S2361F	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.S209F	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2361	IQ 23.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GATCACAACGGAGGCCTGTTT	0.458													19	49					0	0	0.000958276	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198498228	198498228	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:198498228G>A	uc001gup.2	-	3	272	c.166C>T	c.(166-168)CGA>TGA	p.R56*	ATP6V1G3_uc009wzd.2_Nonsense_Mutation_p.R62*|ATP6V1G3_uc001guo.2_3'UTR	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	56					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						TGTTTTAGTCGAAACTCTTTA	0.338													15	37					0	0	0.000566183	0	0
CACNA1S	779	broad.mit.edu	37	1	201030530	201030530	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:201030530C>T	uc001gvv.2	-	25	3347	c.3120G>A	c.(3118-3120)GAG>GAA	p.E1040E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1040	III.|Extracellular (Potential).|Dihydropyridine binding (By similarity).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGATGGCCATCTCCACACGGT	0.527													162	389					0	0	0.000781405	0	0
KDM5B	10765	broad.mit.edu	37	1	202701055	202701055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:202701055G>A	uc001gyf.2	-	24	4038	c.3922C>T	c.(3922-3924)CCT>TCT	p.P1308S	KDM5B_uc009xag.2_Missense_Mutation_p.P1344S|KDM5B_uc001gyg.1_Missense_Mutation_p.P1150S	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1308					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						GTTGTGCCAGGAGGTTGAGAT	0.428													91	205					0	0	0.000781405	0	0
ATP2B4	493	broad.mit.edu	37	1	203668664	203668664	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:203668664T>C	uc001gzw.2	+	4	1352	c.468T>C	c.(466-468)CTT>CTC	p.L156L	ATP2B4_uc001gzv.2_Silent_p.L156L|ATP2B4_uc009xaq.2_Silent_p.L156L	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	156	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CAGCCATCCTTTTCTCAGTGA	0.498													190	135					0	0	0.000781405	0	0
PM20D1	148811	broad.mit.edu	37	1	205814567	205814567	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:205814567G>A	uc001hdj.2	-	3	420	c.375C>T	c.(373-375)CAC>CAT	p.H125H	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	125		Zinc 2 (By similarity).				extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			CCACATCAAAGTGAGCCATCA	0.572													187	464					0	0	0.000781405	0	0
LGTN	1939	broad.mit.edu	37	1	206767007	206767007	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:206767007G>A	uc001heh.2	-	14	1854	c.1645C>T	c.(1645-1647)CAG>TAG	p.Q549*	LGTN_uc009xbw.2_Nonsense_Mutation_p.Q425*	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	549	SUI1.				intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGGTTTCCCTGGATCTGCACC	0.592													64	206					0	0	0.000781405	0	0
CR2	1380	broad.mit.edu	37	1	207642195	207642195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:207642195C>T	uc001hfw.2	+	4	779	c.685C>T	c.(685-687)CCT>TCT	p.P229S	CR2_uc001hfv.2_Missense_Mutation_p.P229S|CR2_uc009xch.2_Missense_Mutation_p.P229S|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	229	Sushi 4.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GGTAAAGGAGCCTCCAATTCT	0.413													94	73					0	0	0.000781405	0	0
CR1L	1379	broad.mit.edu	37	1	207850845	207850845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:207850845C>T	uc001hga.3	+	2	330	c.209C>T	c.(208-210)TCC>TTC	p.S70F	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	70	Sushi 1.					cytoplasm|extracellular region|membrane					0						CCTGGTTATTCCGGAAGACCG	0.473													287	355					0	0	0.000781405	0	0
LAMB3	3914	broad.mit.edu	37	1	209796891	209796891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:209796891C>T	uc001hhg.2	-	15	2707	c.2317G>A	c.(2317-2319)GAG>AAG	p.E773K	LAMB3_uc009xco.2_Missense_Mutation_p.E773K|LAMB3_uc001hhh.2_Missense_Mutation_p.E773K|LAMB3_uc010psl.1_RNA|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	773	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GAAGACATCTCCAGCCTCAGG	0.642													373	368					0	0	0.000781405	0	0
LAMB3	3914	broad.mit.edu	37	1	209803111	209803111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:209803111G>A	uc001hhg.2	-	9	1493	c.1103C>T	c.(1102-1104)CCG>CTG	p.P368L	LAMB3_uc009xco.2_Missense_Mutation_p.P368L|LAMB3_uc001hhh.2_Missense_Mutation_p.P368L|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	368	Laminin EGF-like 2.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GGAAGCTCCCGGGCGCCGGTT	0.567													163	451					0	0	0.000781405	0	0
SERTAD4	56256	broad.mit.edu	37	1	210414919	210414919	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:210414919A>G	uc001hhy.2	+	4	487	c.308A>G	c.(307-309)GAG>GGG	p.E103G	SERTAD4_uc009xcw.2_Missense_Mutation_p.E103G	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	103	SERTA.						protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TCAATTTTTGAGGAACGAGCC	0.284													4	722					0	0	0.00116845	0	0
FAM71A	149647	broad.mit.edu	37	1	212799806	212799806	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:212799806C>T	uc001hjk.2	+	1	1991	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	529										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		TCAGCTCTTTCCTGAGGAACG	0.547													211	187					0	0	0.000781405	0	0
PROX1	5629	broad.mit.edu	37	1	214170561	214170561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:214170561G>A	uc001hkh.2	+	2	955	c.683G>A	c.(682-684)CGA>CAA	p.R228Q	PROX1_uc001hkg.1_Missense_Mutation_p.R228Q	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	228					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GTTTCAGCCCGAAAAGAACAG	0.522													317	263					0	0	0.000781405	0	0
USH2A	7399	broad.mit.edu	37	1	215847603	215847603	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:215847603C>T	uc001hku.1	-	63	14037	c.13650G>A	c.(13648-13650)GTG>GTA	p.V4550V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4550	Fibronectin type-III 31.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGTCCCAGTTCACTAAGATCT	0.443										HNSCC(13;0.011)			20	74					0	0	0.000958276	0	0
MARK1	4139	broad.mit.edu	37	1	220835248	220835248	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:220835248A>G	uc001hmn.3	+	18	2725	c.2128A>G	c.(2128-2130)AGT>GGT	p.S710G	MARK1_uc009xdw.2_Missense_Mutation_p.S711G|MARK1_uc010pun.1_Missense_Mutation_p.S695G|MARK1_uc001hmm.3_Missense_Mutation_p.S673G	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	710					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		GAAGACCACTAGTTCAATGGA	0.398													3	133					0	0	6.4e-05	0	0
AIDA	64853	broad.mit.edu	37	1	222860955	222860955	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:222860955A>G	uc001hnn.2	-	5	540	c.335T>C	c.(334-336)GTT>GCT	p.V112A	AIDA_uc001hno.2_RNA|AIDA_uc010pus.1_Missense_Mutation_p.V88A	NM_022831	NP_073742	Q96BJ3	AIDA_HUMAN	axin interactor, dorsalization associated	112					dorsal/ventral pattern formation|negative regulation of JNK cascade|negative regulation of JUN kinase activity|regulation of protein homodimerization activity						0						GACAGGCTGAACATCAAATGG	0.264													157	146					0	0	0.000781405	0	0
FAM177B	400823	broad.mit.edu	37	1	222919938	222919938	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:222919938C>T	uc001hnt.2	+	3	317	c.51C>T	c.(49-51)TCC>TCT	p.S17S	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	17										ovary(1)	1						GTGTACCTTCCAAAAAGACTA	0.328													18	71					0	0	0.00074312	0	0
C1orf65	164127	broad.mit.edu	37	1	223567632	223567632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:223567632G>A	uc001hoa.2	+	1	918	c.815G>A	c.(814-816)AGG>AAG	p.R272K		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	272	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		AAGGCCCAGAGGATACGGGAG	0.642													201	153					0	0	0.000781405	0	0
EPHX1	2052	broad.mit.edu	37	1	226027685	226027685	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:226027685T>C	uc001hpk.2	+	6	958	c.878T>C	c.(877-879)CTG>CCG	p.L293P	EPHX1_uc001hpl.2_Missense_Mutation_p.L293P	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	293					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					TTCTACAGCCTGATGAGGGAG	0.607													5	838					0	0	0.000602214	0	0
TMEM63A	9725	broad.mit.edu	37	1	226055587	226055587	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:226055587C>T	uc001hpm.1	-	7	764	c.514_splice	c.e7+1	p.D172_splice	TMEM63A_uc010pvi.1_Splice_Site_p.D172_splice	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A							integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					AGGGTCATTACCCAGCAAGTC	0.547													132	125					0	0	0.000781405	0	0
SNAP47	116841	broad.mit.edu	37	1	227968362	227968362	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:227968362G>A	uc001hrf.2	+	5	1797	c.1383G>A	c.(1381-1383)AAG>AAA	p.K461K	SNAP47_uc001hra.2_Silent_p.K219K	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	461	t-SNARE coiled-coil homology 2.					endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						GGCGGATGAAGAGGCTGACCT	0.622													159	602					0	0	0.000781405	0	0
WNT3A	89780	broad.mit.edu	37	1	228210433	228210433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:228210433C>T	uc001hrq.1	+	2	215	c.137C>T	c.(136-138)CCG>CTG	p.P46L	WNT3A_uc001hrp.1_Missense_Mutation_p.P46L	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	46					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				GCCAGCATCCCGGGCCTGGTC	0.642													166	368					0	0	0.000781405	0	0
OBSCN	84033	broad.mit.edu	37	1	228456411	228456411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:228456411G>A	uc009xez.1	+	17	5086	c.5042G>A	c.(5041-5043)CGG>CAG	p.R1681Q	OBSCN_uc001hsn.2_Missense_Mutation_p.R1681Q|OBSCN_uc001hso.2_Missense_Mutation_p.R127Q	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1681	Ig-like 17.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGCTGCACACGGAGGCTGGTG	0.672													371	313					0	0	0.000781405	0	0
PCNXL2	80003	broad.mit.edu	37	1	233134934	233134934	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:233134934C>T	uc001hvl.2	-	31	5755	c.5520G>A	c.(5518-5520)GGG>GGA	p.G1840G	PCNXL2_uc001hvk.1_Silent_p.G492G|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1840						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GCCTGTGTGTCCCTAGGTAGG	0.502													140	101					0	0	0.000781405	0	0
KIAA1804	84451	broad.mit.edu	37	1	233512231	233512231	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:233512231C>T	uc001hvt.3	+	8	2143	c.1882C>T	c.(1882-1884)CAG>TAG	p.Q628*	KIAA1804_uc001hvu.3_Nonsense_Mutation_p.Q74*	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	628					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				AATAAAAAATCAGAAAACCAT	0.413													28	42					0	0	0.000491102	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514855	233514855	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:233514855C>T	uc001hvt.3	+	9	2364	c.2103C>T	c.(2101-2103)TCC>TCT	p.S701S	KIAA1804_uc001hvu.3_Silent_p.S147S	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	701				S -> T (in Ref. 1; CAC84640).	activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CCACAGTCTCCATTGAGATGA	0.527													35	92					0	0	0.000692331	0	0
LYST	1130	broad.mit.edu	37	1	235972583	235972583	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:235972583T>C	uc001hxj.2	-	5	1710	c.1535A>G	c.(1534-1536)CAT>CGT	p.H512R	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.H512R	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	512					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			ATCTCGGTGATGATGCATAAA	0.383									Chediak-Higashi_syndrome				33	59					0	0	0.000409698	0	0
RYR2	6262	broad.mit.edu	37	1	237947744	237947744	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:237947744C>T	uc001hyl.1	+	90	12852	c.12732C>T	c.(12730-12732)GCC>GCT	p.A4244A	RYR2_uc010pya.1_Silent_p.A659A	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4244	Helical; Name=M3; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCAGGTCGGCCCTGTTTGCGC	0.502													14	15					0	0	0.000219431	0	0
CNST	163882	broad.mit.edu	37	1	246784911	246784911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:246784911G>A	uc001ibp.2	+	3	938	c.560G>A	c.(559-561)AGA>AAA	p.R187K	CNST_uc001ibo.3_Missense_Mutation_p.R187K	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	187					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						TTGGATTCAAGAGCACTTCCC	0.458													237	682					0	0	0.000781405	0	0
SCCPDH	51097	broad.mit.edu	37	1	246923342	246923342	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:246923342T>G	uc001ibr.2	+	8	1244	c.897T>G	c.(895-897)TTT>TTG	p.F299L		NM_016002	NP_057086	Q8NBX0	SCPDH_HUMAN	saccharopine dehydrogenase (putative)	299						midbody	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity			ovary(1)	1	all_cancers(71;6.8e-05)|all_epithelial(71;7.93e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0545)|Lung NSC(105;0.0618)	all_cancers(173;0.0343)	OV - Ovarian serous cystadenocarcinoma(106;0.00323)	GBM - Glioblastoma multiforme(49;0.0896)		TTTTGTTCTTTGTGAGGTTTG	0.328													90	176					0	0	0.000781405	0	0
ZNF695	57116	broad.mit.edu	37	1	247150635	247150635	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:247150635G>A	uc009xgu.2	-	4	1327	c.1182C>T	c.(1180-1182)TAC>TAT	p.Y394Y	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	394	C2H2-type 9.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GCTGAATAAGGTATGAGAACC	0.393													97	123					0	0	0.000781405	0	0
NLRP3	114548	broad.mit.edu	37	1	247588522	247588522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:247588522G>A	uc001icr.2	+	5	1915	c.1777G>A	c.(1777-1779)GAG>AAG	p.E593K	NLRP3_uc001ics.2_Missense_Mutation_p.E593K|NLRP3_uc001icu.2_Missense_Mutation_p.E593K|NLRP3_uc001icw.2_Missense_Mutation_p.E593K|NLRP3_uc001icv.2_Missense_Mutation_p.E593K|NLRP3_uc010pyw.1_Missense_Mutation_p.E591K|NLRP3_uc001ict.1_Missense_Mutation_p.E591K	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	593					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTCCTACTTGGAGAAGAAATT	0.438													91	91					0	0	0.000781405	0	0
OR2G2	81470	broad.mit.edu	37	1	247752384	247752384	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:247752384C>T	uc010pyy.1	+	1	723	c.723C>T	c.(721-723)TTC>TTT	p.F241F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGAAAGCATTCGGGACCTGCT	0.403													33	23					0	0	0.000279167	0	0
OR6F1	343169	broad.mit.edu	37	1	247875599	247875599	+	Silent	SNP	G	A	A	rs144440883	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:247875599G>A	uc001idj.1	-	1	459	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAATGGCCACGAAACCACACA	0.587													51	213					0	0	0.000781405	0	0
OR2L13	284521	broad.mit.edu	37	1	248262730	248262730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:248262730C>T	uc001ids.2	+	3	390	c.53C>T	c.(52-54)CCC>CTC	p.P18L		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GGTCTGCTTCCCCCAAATCAA	0.373													48	205					0	0	0.000781405	0	0
OR2G6	391211	broad.mit.edu	37	1	248684994	248684994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:248684994G>A	uc001ien.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTTCTCCTGGGATTTTCAGAT	0.418													92	91					0	0	0.000781405	0	0
DIP2C	22982	broad.mit.edu	37	10	408428	408428	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:408428A>G	uc001ifp.2	-	22	2884	c.2794_splice	c.e22+1	p.E932_splice	DIP2C_uc009xhi.1_Splice_Site_p.E318_splice|DIP2C_uc010pzz.1_Splice_Site_p.E253_splice	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C							nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TGGTGCACATACCTGGCTGCT	0.597													133	263					0	0	0.000781405	0	0
OLAH	55301	broad.mit.edu	37	10	15107690	15107690	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:15107690G>A	uc001inu.2	+	6	764	c.510G>A	c.(508-510)AAG>AAA	p.K170K	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Silent_p.K223K	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	170					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						CTGAAGCCAAGGAATTTGTGA	0.393													25	53					0	0	0.000586117	0	0
OLAH	55301	broad.mit.edu	37	10	15115217	15115217	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:15115217T>C	uc001inu.2	+	8	1041	c.787T>C	c.(787-789)TCC>CCC	p.S263P	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.S316P	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	263					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						ATCATCGATATCCAATTTTTA	0.318													3	107					0	0	0.00024832	0	0
CUBN	8029	broad.mit.edu	37	10	17153034	17153034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:17153034C>T	uc001ioo.2	-	9	951	c.899G>A	c.(898-900)GGA>GAA	p.G300E		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	300	EGF-like 3; calcium-binding (Potential).				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCAAATATATCCATTGCCTTG	0.333													67	94					0	0	0.000781405	0	0
PLXDC2	84898	broad.mit.edu	37	10	20290886	20290886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:20290886G>A	uc001iqg.1	+	2	932	c.295G>A	c.(295-297)GAT>AAT	p.D99N	PLXDC2_uc001iqh.1_Missense_Mutation_p.D99N	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	99	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						GCTGCTGGATGATGGGCAGGA	0.443													4	15					0	0	0.000602214	0	0
NEBL	10529	broad.mit.edu	37	10	21250658	21250658	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:21250658G>A	uc001iqk.2	-	4	654	c.300C>T	c.(298-300)ATC>ATT	p.I100I		NM_213569	NP_998734	O76041	NEBL_HUMAN	nebulette non-muscle isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGTCCGTGACGATGCTGAAGC	0.458													15	54					0	0	0.000308642	0	0
C10orf113	387638	broad.mit.edu	37	10	21435362	21435362	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:21435362G>A	uc001iqm.2	-	1	66	c.46C>T	c.(46-48)CTA>TTA	p.L16L	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	26										ovary(3)|pancreas(1)	4						ATATAAGCTAGAGGACAGCCA	0.378													17	61					0	0	0.000422831	0	0
SPAG6	9576	broad.mit.edu	37	10	22676824	22676824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:22676824G>A	uc001iri.2	+	6	893	c.751G>A	c.(751-753)GAG>AAG	p.E251K	SPAG6_uc001irj.2_Missense_Mutation_p.E251K|SPAG6_uc010qct.1_Missense_Mutation_p.E221K|SPAG6_uc009xkh.2_Missense_Mutation_p.E229K	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	251	ARM 6.				cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						TGTTGAAGCAGAGATTTTTCC	0.383													15	27					0	0	0.000219431	0	0
GPR158	57512	broad.mit.edu	37	10	25887347	25887347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:25887347C>T	uc001isj.2	+	11	2852	c.2792C>T	c.(2791-2793)TCC>TTC	p.S931F	GPR158_uc001isk.2_Missense_Mutation_p.S306F	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	931	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CGCACTAAATCCCAGAAACCT	0.438													42	79					0	0	0.000319135	0	0
GAD2	2572	broad.mit.edu	37	10	26518625	26518625	+	Silent	SNP	C	T	T	rs145045666		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:26518625C>T	uc001isp.2	+	7	1262	c.759C>T	c.(757-759)ATC>ATT	p.I253I	GAD2_uc001isq.2_Silent_p.I253I	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	253					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding	p.I253I(1)		central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CCATGATGATCGCACGCTTTA	0.428													47	95					0	0	0.000781405	0	0
ACBD5	91452	broad.mit.edu	37	10	27507103	27507103	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:27507103A>T	uc010qdp.1	-	7	826	c.635T>A	c.(634-636)ATG>AAG	p.M212K	ACBD5_uc010qdm.1_Missense_Mutation_p.M210K|ACBD5_uc010qdn.1_Missense_Mutation_p.M103K|ACBD5_uc010qdo.1_Intron|ACBD5_uc001ito.2_Missense_Mutation_p.M177K|ACBD5_uc001itp.2_Missense_Mutation_p.M103K|ACBD5_uc001itq.2_Missense_Mutation_p.M103K|ACBD5_uc001itr.1_Missense_Mutation_p.M1K	NM_145698	NP_663736	Q5T8D3	ACBD5_HUMAN	acyl-Coenzyme A binding domain containing 5	221					transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding				0						CTTCTTCATCATTTTCTTATC	0.353													22	187					0	0	0.000720815	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702574	27702574	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:27702574C>T	uc001itu.2	-	1	724	c.606G>A	c.(604-606)AGG>AGA	p.R202R		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	202					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CTTCGGTGCTCCTCCTGGAGG	0.622													276	525					0	0	0.000781405	0	0
ARMC4	55130	broad.mit.edu	37	10	28228936	28228936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:28228936C>T	uc009xky.2	-	14	2085	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K	ARMC4_uc010qds.1_Missense_Mutation_p.E188K|ARMC4_uc010qdt.1_Missense_Mutation_p.E355K|ARMC4_uc001itz.2_Missense_Mutation_p.E663K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	663	ARM 4.						binding			ovary(4)|skin(2)	6						CGGTAGTTTTCCTAGGAATAA	0.368													6	17					0	0	0.000274275	0	0
SVIL	6840	broad.mit.edu	37	10	29747363	29747363	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:29747363C>T	uc001iut.1	-	37	7311	c.6558G>A	c.(6556-6558)GAG>GAA	p.E2186E	LOC387647_uc001iuo.1_Intron|LOC387647_uc001iup.2_Intron|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Silent_p.E1100E|SVIL_uc001iuu.1_Silent_p.E1760E	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	2186	HP.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				AACCGCTTACCTCGAAGTCTT	0.597													83	108					0	0	0.000781405	0	0
SVIL	6840	broad.mit.edu	37	10	29788162	29788162	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:29788162T>C	uc001iut.1	-	18	4300	c.3547A>G	c.(3547-3549)ACG>GCG	p.T1183A	SVIL_uc010qdw.1_Missense_Mutation_p.T97A|SVIL_uc001iuu.1_Missense_Mutation_p.T757A|SVIL_uc009xlc.2_5'Flank	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1183					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TCCTCAATCGTCATTTGGCTC	0.542													3	203					0	0	6.4e-05	0	0
ZEB1	6935	broad.mit.edu	37	10	31810320	31810320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:31810320C>T	uc001ivs.3	+	7	2120	c.2057C>T	c.(2056-2058)TCC>TTC	p.S686F	ZEB1_uc001ivr.3_Missense_Mutation_p.S468F|ZEB1_uc010qee.1_Missense_Mutation_p.S468F|ZEB1_uc010qef.1_Missense_Mutation_p.S468F|ZEB1_uc009xlj.1_Missense_Mutation_p.S612F|ZEB1_uc010qeg.1_Missense_Mutation_p.S545F|ZEB1_uc009xlk.1_Missense_Mutation_p.S468F|ZEB1_uc001ivt.3_Missense_Mutation_p.S468F|ZEB1_uc001ivu.3_Missense_Mutation_p.S687F|ZEB1_uc001ivv.3_Missense_Mutation_p.S666F|ZEB1_uc010qeh.1_Missense_Mutation_p.S619F|ZEB1_uc009xlo.1_Missense_Mutation_p.S669F|ZEB1_uc009xlp.2_Missense_Mutation_p.S670F	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	686					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ATGACTAACTCCCCAGTTTTA	0.443													6	15					0	0	0.00116845	0	0
GJD4	219770	broad.mit.edu	37	10	35896618	35896618	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:35896618G>A	uc001iyy.1	+	2	335	c.177G>A	c.(175-177)CCG>CCA	p.P59P		NM_153368	NP_699199	Q96KN9	CXD4_HUMAN	connexin40.1	59	Extracellular (Potential).				cell communication	connexon complex|integral to membrane				large_intestine(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CGCTGCAGCCGGGATGCGCCA	0.627													263	548					0	0	0.000781405	0	0
FZD8	8325	broad.mit.edu	37	10	35928828	35928828	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:35928828G>A	uc001iyz.1	-	1	1535	c.1530C>T	c.(1528-1530)ATC>ATT	p.I510I		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	510	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						TGACCGAGCGGATGCGGAAGA	0.637													71	167					0	0	0.000781405	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430981	37430981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:37430981G>A	uc001iza.1	+	7	1087	c.988G>A	c.(988-990)GAG>AAG	p.E330K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	386						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GATCGCATGGGAGAAAAAAGA	0.438													60	135					0	0	0.000781405	0	0
RET	5979	broad.mit.edu	37	10	43615054	43615054	+	Missense_Mutation	SNP	G	A	A	rs142779213		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:43615054G>A	uc001jal.2	+	14	2658	c.2468G>A	c.(2467-2469)GGG>GAG	p.G823E	RET_uc001jak.1_Missense_Mutation_p.G823E|RET_uc010qez.1_Missense_Mutation_p.G569E	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	823	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CGCAAAGTGGGGCCTGGCTAC	0.687		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				120	178					0	0	0.000781405	0	0
RET	5979	broad.mit.edu	37	10	43617398	43617398	+	Missense_Mutation	SNP	G	A	A	rs78347871		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:43617398G>A	uc001jal.2	+	16	2925	c.2735G>A	c.(2734-2736)CGG>CAG	p.R912Q	RET_uc001jak.1_Missense_Mutation_p.R912Q|RET_uc010qez.1_Missense_Mutation_p.R658Q	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	912	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CTTTAGGGTCGGATTCCAGTT	0.453		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				263	627					0	0	0.000781405	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285640	44285640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:44285640C>T	uc010qfe.1	-	1	226	c.196G>A	c.(196-198)GTA>ATA	p.V66I		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						TCTCTCATTACCAGACAATCT	0.433													36	117					0	0	0.000692331	0	0
LOC100133308	100133308	broad.mit.edu	37	10	45602557	45602558	+	RNA	DNP	AC	CT	CT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:45602557_45602558AC>CT	uc001jby.2	-	1		c.879_880GT>AG			LOC100133308_uc001jbz.2_Intron|LOC100133308_uc009xmq.1_Intron					Homo sapiens cDNA FLJ32851 fis, clone TESTI2003432.												0						CAATATATAAACAGGGTGGCAT	0.441													14	13					0	0	6.4e-05	0	0
OR13A1	79290	broad.mit.edu	37	10	45799539	45799539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:45799539G>A	uc001jcc.1	-	4	641	c.332C>T	c.(331-333)TCC>TTC	p.S111F	OR13A1_uc001jcd.1_Missense_Mutation_p.S107F	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	111	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCCCCGTAGGAGATGGAGCT	0.557													52	77					0	0	0.000781405	0	0
ZNF488	118738	broad.mit.edu	37	10	48371278	48371278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:48371278C>T	uc001jex.2	+	2	908	c.746C>T	c.(745-747)CCC>CTC	p.P249L	ZNF488_uc001jey.2_Missense_Mutation_p.P142L	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	249					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCCCAGGTGCCCCCACCCTCA	0.592													213	264					0	0	0.000781405	0	0
GDF2	2658	broad.mit.edu	37	10	48413663	48413663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:48413663G>A	uc001jfa.1	-	2	1368	c.1205C>T	c.(1204-1206)TCC>TTC	p.S402F		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	402					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GTAGAGGACGGAGATGGGGCT	0.597													55	95					0	0	0.000781405	0	0
GDF2	2658	broad.mit.edu	37	10	48413860	48413860	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:48413860G>A	uc001jfa.1	-	2	1171	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	336					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CGATGTCCTCGAAGTTTACCC	0.607													139	311					0	0	0.000781405	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49654486	49654486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:49654486G>A	uc001jgt.2	-	10	2342	c.2045C>T	c.(2044-2046)TCG>TTG	p.S682L	ARHGAP22_uc001jgs.2_Missense_Mutation_p.S592L|ARHGAP22_uc001jgu.2_Missense_Mutation_p.S698L|ARHGAP22_uc010qgl.1_Missense_Mutation_p.S639L|ARHGAP22_uc010qgm.1_Missense_Mutation_p.S688L|ARHGAP22_uc001jgv.2_Missense_Mutation_p.S380L|ARHGAP22_uc001jgr.2_Missense_Mutation_p.S399L	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	682	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TCCTAGGGTCGAAAAAAACTC	0.542													175	461					0	0	0.000781405	0	0
C10orf71	118461	broad.mit.edu	37	10	50531756	50531756	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:50531756A>T	uc010qgp.1	+	3	1505	c.1166A>T	c.(1165-1167)AAA>ATA	p.K389I		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	389											0						ACTGGCAAAAAAGGGAAAGAA	0.478													230	382					0	0	0.000781405	0	0
SGMS1	259230	broad.mit.edu	37	10	52103386	52103386	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:52103386C>T	uc001jje.2	-	7	1443	c.489G>A	c.(487-489)AAG>AAA	p.K163K	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Silent_p.K163K|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	169					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GCTGCACCTCCTTAGGAGGTA	0.478													38	66					0	0	0.00111076	0	0
A1CF	29974	broad.mit.edu	37	10	52575934	52575934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:52575934C>T	uc001jjj.2	-	9	1161	c.973G>A	c.(973-975)GGA>AGA	p.G325R	A1CF_uc010qhn.1_Missense_Mutation_p.G333R|A1CF_uc001jji.2_Missense_Mutation_p.G325R|A1CF_uc001jjh.2_Missense_Mutation_p.G333R|A1CF_uc010qho.1_Missense_Mutation_p.G333R|A1CF_uc009xov.2_Missense_Mutation_p.G325R	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	325					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GTATACTCTCCTTGCAGCATG	0.522													3	17					0	0	6.4e-05	0	0
PRKG1	5592	broad.mit.edu	37	10	54040672	54040672	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:54040672C>T	uc001jjm.2	+	13	1676	c.1482C>T	c.(1480-1482)CAC>CAT	p.H494H	PRKG1_uc001jjo.2_Silent_p.H509H|PRKG1_uc009xow.1_Silent_p.H212H|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	494	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TCCTAGATCACCGAGGTTATG	0.388													6	24					0	0	0.00116845	0	0
PCDH15	65217	broad.mit.edu	37	10	55582777	55582777	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:55582777A>C	uc001jju.1	-	33	5104	c.4709T>G	c.(4708-4710)ATT>AGT	p.I1570S	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.I1567S|PCDH15_uc010qhw.1_Missense_Mutation_p.I1530S|PCDH15_uc010qhx.1_Missense_Mutation_p.I1501S|PCDH15_uc010qhy.1_Missense_Mutation_p.I1577S|PCDH15_uc010qhz.1_Missense_Mutation_p.I1572S|PCDH15_uc010qia.1_Missense_Mutation_p.I1550S|PCDH15_uc010qib.1_Missense_Mutation_p.I1547S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1570	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CAGCCTCTGAATCTTTTCTCT	0.458										HNSCC(58;0.16)			195	312					0	0	0.000781405	0	0
CCDC6	8030	broad.mit.edu	37	10	61666066	61666066	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:61666066T>C	uc001jks.3	-	1	753	c.117A>G	c.(115-117)GGA>GGG	p.G39G		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	39	Poly-Gly.					cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		cgccgccgcctcccccgccgc	0.552													19	310					0	0	0.000781405	0	0
ANK3	288	broad.mit.edu	37	10	61829923	61829923	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:61829923T>G	uc001jky.2	-	37	10908	c.10716A>C	c.(10714-10716)GAA>GAC	p.E3572D	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3572					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAGAGCGGTCTTCTACCGCCA	0.483													9	21					0	0	0.000673444	0	0
ANK3	288	broad.mit.edu	37	10	61830110	61830110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:61830110G>A	uc001jky.2	-	37	10721	c.10529C>T	c.(10528-10530)CCT>CTT	p.P3510L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3510					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGATCTGTCAGGATGTCTGCC	0.418													15	15					0	0	0.000308642	0	0
ANK3	288	broad.mit.edu	37	10	61834193	61834193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:61834193G>A	uc001jky.2	-	37	6638	c.6446C>T	c.(6445-6447)CCT>CTT	p.P2149L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2149					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAGTGGTTTAGGACCAGTGCT	0.453													22	51					0	0	0.000720815	0	0
ANK3	288	broad.mit.edu	37	10	61848032	61848032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:61848032G>A	uc001jky.2	-	29	3605	c.3413C>T	c.(3412-3414)TCC>TTC	p.S1138F	ANK3_uc001jkw.2_Missense_Mutation_p.S272F|ANK3_uc009xpa.2_Missense_Mutation_p.S272F|ANK3_uc001jkx.2_Missense_Mutation_p.S316F|ANK3_uc010qih.1_Missense_Mutation_p.S1139F|ANK3_uc001jkz.3_Missense_Mutation_p.S1132F|ANK3_uc001jla.1_Missense_Mutation_p.S204F|ANK3_uc001jlb.1_Missense_Mutation_p.S656F	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1138					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTTAATCCGGGAAACCACTGC	0.468													17	51					0	0	0.00121646	0	0
ANK3	288	broad.mit.edu	37	10	61874073	61874073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:61874073C>T	uc001jky.2	-	26	3050	c.2858G>A	c.(2857-2859)AGG>AAG	p.R953K	ANK3_uc001jkw.2_Missense_Mutation_p.R87K|ANK3_uc009xpa.2_Missense_Mutation_p.R87K|ANK3_uc001jkx.2_Missense_Mutation_p.R131K|ANK3_uc010qih.1_Missense_Mutation_p.R954K|ANK3_uc001jkz.3_Missense_Mutation_p.R947K|ANK3_uc001jla.1_Missense_Mutation_p.R19K|ANK3_uc001jlb.1_Missense_Mutation_p.R460K	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	953					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATCAAATTCCCTTGTGAATGT	0.333													7	22					0	0	8.12818e-05	0	0
ZNF365	22891	broad.mit.edu	37	10	64135994	64135994	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:64135994G>A	uc001jmc.2	+	2	357	c.42G>A	c.(40-42)CAG>CAA	p.Q14Q	ZNF365_uc001jly.3_Silent_p.Q29Q|ZNF365_uc001jmb.3_Silent_p.Q14Q|ZNF365_uc001jlz.3_Silent_p.Q14Q|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					ATCCCTGGCAGGAGTCCTTTG	0.493													226	398					0	0	0.000781405	0	0
ZNF365	22891	broad.mit.edu	37	10	64148314	64148314	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:64148314C>T	uc001jmc.2	+	3	1218	c.903C>T	c.(901-903)GTC>GTT	p.V301V	ZNF365_uc001jly.3_Silent_p.V316V|ZNF365_uc001jmb.3_Silent_p.V301V|ZNF365_uc001jlz.3_Silent_p.V301V|ZNF365_uc001jma.3_RNA	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					CTGGCTTTGTCCGTGATCTCA	0.572													33	63					0	0	0.000814825	0	0
ADO	84890	broad.mit.edu	37	10	64565099	64565099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:64565099G>A	uc001jmg.2	+	1	584	c.280G>A	c.(280-282)GAC>AAC	p.D94N		NM_032804	NP_116193	Q96SZ5	AEDO_HUMAN	2-aminoethanethiol (cysteamine) dioxygenase	94							cysteamine dioxygenase activity|metal ion binding				0	Prostate(12;0.0297)|all_hematologic(501;0.228)					CTACGAGACGGACGGCTTCAG	0.667													55	104					0	0	0.000781405	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526055	68526055	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:68526055C>T	uc009xpn.1	-	9	1371	c.1248G>A	c.(1246-1248)GCG>GCA	p.A416A	CTNNA3_uc001jmw.2_Silent_p.A416A|CTNNA3_uc001jmx.3_Silent_p.A416A	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	416					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CATGAAATATCGCAGCATATT	0.433													11	27					0	0	0.000978159	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940089	68940089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:68940089C>T	uc009xpn.1	-	7	1156	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K	CTNNA3_uc001jmw.2_Missense_Mutation_p.E345K|CTNNA3_uc001jmx.3_Missense_Mutation_p.E345K|CTNNA3_uc009xpo.1_Missense_Mutation_p.E205K|CTNNA3_uc001jna.2_Missense_Mutation_p.E357K	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	345	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TTCATGTACTCTGAAAGCAGA	0.483													8	13					0	0	0.000442599	0	0
HERC4	26091	broad.mit.edu	37	10	69750152	69750152	+	Silent	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:69750152T>G	uc001jng.3	-	14	1760	c.1449A>C	c.(1447-1449)GCA>GCC	p.A483A	HERC4_uc009xpq.2_Silent_p.A24A|HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Silent_p.A483A|HERC4_uc009xpr.2_Silent_p.A483A|HERC4_uc001jni.3_Silent_p.A227A|HERC4_uc001jnj.2_Silent_p.A483A	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	483					cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						CCAAACTAGCTGCCACCTATA	0.274													12	20					0	0	0.00136819	0	0
TET1	80312	broad.mit.edu	37	10	70333459	70333459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:70333459C>T	uc001jok.3	+	2	1869	c.1364C>T	c.(1363-1365)ACT>ATT	p.T455I		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	455					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						CCCCAAAGCACTGTCTCATAT	0.463													121	227					0	0	0.000781405	0	0
TYSND1	219743	broad.mit.edu	37	10	71902467	71902467	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:71902467G>A	uc001jqr.2	-	3	1594	c.1440C>T	c.(1438-1440)TCC>TCT	p.S480S	TYSND1_uc001jqq.2_RNA|TYSND1_uc001jqs.2_Intron|TYSND1_uc001jqt.2_Intron	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	480	Serine protease.				proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						GTCCCCCACTGGAGCCGCTGT	0.632													84	110					0	0	0.000781405	0	0
KIAA1274	27143	broad.mit.edu	37	10	72324241	72324241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:72324241C>T	uc001jrd.3	+	19	2665	c.2384C>T	c.(2383-2385)TCC>TTC	p.S795F	KIAA1274_uc001jre.3_Missense_Mutation_p.S86F	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	795										ovary(2)|central_nervous_system(1)	3						AAGGCCGACTCCTGGCAGAGG	0.637													205	484					0	0	0.000781405	0	0
UNC5B	219699	broad.mit.edu	37	10	73057803	73057803	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:73057803G>A	uc001jro.2	+	16	3073	c.2628G>A	c.(2626-2628)CGG>CGA	p.R876R	UNC5B_uc001jrp.2_Silent_p.R865R|UNC5B_uc001jrq.1_5'Flank	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	876	Cytoplasmic (Potential).|Death.				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CCAACTCACGGGGCAATGACT	0.562													95	216					0	0	0.000781405	0	0
C10orf54	64115	broad.mit.edu	37	10	73521372	73521372	+	Missense_Mutation	SNP	T	C	C	rs142695132		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:73521372T>C	uc001jsd.2	-	2	635	c.494A>G	c.(493-495)GAG>GGG	p.E165G	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Missense_Mutation_p.E33G|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_Missense_Mutation_p.E165G	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	165	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CACCTGCAGCTCCATGGCACC	0.617													3	150					0	0	0.000602214	0	0
CDH23	64072	broad.mit.edu	37	10	73544845	73544845	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:73544845C>T	uc001jrx.3	+	41	6077	c.5700C>T	c.(5698-5700)TTC>TTT	p.F1900F		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1900	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGGCCTTCTTCATCAATGCCA	0.597													125	276					0	0	0.000781405	0	0
TTC18	118491	broad.mit.edu	37	10	75037955	75037955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:75037955C>T	uc009xrc.2	-	21	2711	c.2590G>A	c.(2590-2592)GAG>AAG	p.E864K	TTC18_uc001jty.2_Missense_Mutation_p.E864K|TTC18_uc001jtv.3_5'UTR|TTC18_uc001jtw.3_5'UTR|TTC18_uc001jtx.2_Missense_Mutation_p.E245K	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	864							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					GTTGGTATCTCCTTGATAAAT	0.383													57	96					0	0	0.000781405	0	0
MYOZ1	58529	broad.mit.edu	37	10	75397610	75397610	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:75397610T>C	uc001jur.2	-	3	509	c.144A>G	c.(142-144)GAA>GAG	p.E48E		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	48					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					GCAGCGACAGTTCCTCCAACA	0.493													391	502					0	0	0.000781405	0	0
KIAA0913	23053	broad.mit.edu	37	10	75548442	75548443	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:75548442_75548443CC>AA	uc009xrl.2	+	2	255_256	c.223_224CC>AA	c.(223-225)CCA>AAA	p.P75K	KIAA0913_uc001jve.2_Missense_Mutation_p.P75K|KIAA0913_uc001jvf.2_Missense_Mutation_p.P75K|KIAA0913_uc001jvh.2_5'Flank	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	75							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					ACTGGTGATCCCATTGGTGGAG	0.48													11	478					0	0	6.4e-05	0	0
KCNMA1	3778	broad.mit.edu	37	10	78850193	78850193	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:78850193C>T	uc001jxn.2	-	10	1476	c.1299G>A	c.(1297-1299)CGG>CGA	p.R433R	KCNMA1_uc001jxj.2_Silent_p.R433R|KCNMA1_uc001jxk.1_Silent_p.R48R|KCNMA1_uc009xrt.1_Silent_p.R253R|KCNMA1_uc001jxl.1_Silent_p.R87R|KCNMA1_uc001jxo.2_Silent_p.R433R|KCNMA1_uc001jxm.2_Silent_p.R433R|KCNMA1_uc001jxq.2_Silent_p.R433R	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	433	RCK N-terminal.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	TGACGTCATCCCGGTCCTTGT	0.522													17	49					0	0	0.000958276	0	0
DLG5	9231	broad.mit.edu	37	10	79581657	79581657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:79581657C>T	uc001jzk.2	-	15	2655	c.2585G>A	c.(2584-2586)GGA>GAA	p.G862E	DLG5_uc001jzi.2_5'Flank|DLG5_uc001jzj.2_Intron|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.G466E	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	862					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GCTGCTGCCTCCTGGGGGGCC	0.582													260	349					0	0	0.000781405	0	0
EIF5AL1	143244	broad.mit.edu	37	10	81272687	81272687	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:81272687C>T	uc009xrx.2	+	1	331	c.282C>T	c.(280-282)ATC>ATT	p.I94I	uc010qls.1_5'Flank	NM_001099692	NP_001093162	Q6IS14	IF5AL_HUMAN	eukaryotic translation initiation factor 5A-like	94					mRNA transport|peptidyl-lysine modification to hypusine|positive regulation of translational elongation|positive regulation of translational termination|protein transport|translational frameshifting|transmembrane transport	endoplasmic reticulum membrane|nuclear pore	ribosome binding|translation elongation factor activity				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TGATTGGCATCCAGGATGGGT	0.493													12	484					0	0	0.000953801	0	0
MBL1P	8512	broad.mit.edu	37	10	81667453	81667453	+	RNA	SNP	G	A	A	rs112457702		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:81667453G>A	uc001kbf.2	+	3		c.391G>A								Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						AAAAAGCATCGTATTCCAGTG	0.373													8	299					0	0	0.000157383	0	0
ANXA11	311	broad.mit.edu	37	10	81918919	81918919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:81918919C>T	uc001kbq.1	-	14	2038	c.1213G>A	c.(1213-1215)GAC>AAC	p.D405N	ANXA11_uc010qlx.1_Missense_Mutation_p.D505N|ANXA11_uc001kbr.1_Missense_Mutation_p.D405N|ANXA11_uc001kbs.1_Missense_Mutation_p.D405N|ANXA11_uc001kbt.1_Missense_Mutation_p.D405N|ANXA11_uc010qly.1_Missense_Mutation_p.D372N|ANXA11_uc009xsq.1_Missense_Mutation_p.D409N|ANXA11_uc001kbu.1_Missense_Mutation_p.D405N	NM_145869	NP_665876	P50995	ANX11_HUMAN	annexin A11	405	Annexin 3.				cell cycle|cytokinesis, completion of separation|phagocytosis|response to calcium ion	azurophil granule|melanosome|midbody|nuclear envelope|nucleoplasm|phagocytic vesicle|specific granule|spindle	calcium-dependent phospholipid binding|calcium-dependent protein binding|S100 alpha binding			ovary(1)	1	Prostate(51;0.00985)|all_epithelial(25;0.0951)		Colorectal(32;0.109)			TTCTCAATGTCCCGGCCTGTC	0.453													196	324					0	0	0.000781405	0	0
GRID1	2894	broad.mit.edu	37	10	87362080	87362080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:87362080C>T	uc001kdl.1	-	16	3081	c.2980G>A	c.(2980-2982)GGA>AGA	p.G994R	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.G565R|uc001kdk.1_Intron	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	994	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGGACGCCTCCAGGCACGGGC	0.677										Multiple Myeloma(13;0.14)			98	155					0	0	0.000781405	0	0
BTAF1	9044	broad.mit.edu	37	10	93718859	93718859	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:93718859T>C	uc001khr.2	+	9	1036	c.938T>C	c.(937-939)CTT>CCT	p.L313P	BTAF1_uc009xua.1_RNA|BTAF1_uc001khs.1_5'UTR	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	313					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AGGGAAATTCTTAAAGCTCAT	0.358													61	143					0	0	0.000781405	0	0
EXOC6	54536	broad.mit.edu	37	10	94669218	94669218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:94669218G>A	uc001kig.2	+	6	559	c.493G>A	c.(493-495)GAG>AAG	p.E165K	EXOC6_uc010qnr.1_Missense_Mutation_p.E181K|EXOC6_uc001kie.2_Missense_Mutation_p.E160K|EXOC6_uc009xub.2_Missense_Mutation_p.E165K|EXOC6_uc009xuc.2_Missense_Mutation_p.E165K	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	165					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				GGAACAATTAGAGAATGTGTA	0.333													97	205					0	0	0.000781405	0	0
PIPSL	266971	broad.mit.edu	37	10	95719625	95719626	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:95719625_95719626CG>AT	uc009xuj.2	-	1	2047_2048	c.1528_1529CG>AT	c.(1528-1530)CGG>ATG	p.R510M		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GGCCTGCAGCCGGGTGGGTAAG	0.49													4	107					0	0	6.4e-05	0	0
PIPSL	266971	broad.mit.edu	37	10	95720216	95720216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:95720216G>A	uc009xuj.2	-	1	1457	c.938C>T	c.(937-939)TCC>TTC	p.S313F		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TCCCTGGATGGATTCCATGGC	0.532													67	108					0	0	0.000781405	0	0
CYP2C18	1562	broad.mit.edu	37	10	96495027	96495027	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:96495027G>A	uc001kjv.3	+	9	1625	c.1299G>A	c.(1297-1299)CGG>CGA	p.R433R	CYP2C18_uc001kjw.3_Silent_p.R374R|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	433					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CAGGAAAACGGATGTGTATGG	0.393													11	16					0	0	0.000673444	0	0
C10orf129	142827	broad.mit.edu	37	10	96971703	96971703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:96971703C>T	uc001kke.2	+	6	949	c.824C>T	c.(823-825)TCC>TTC	p.S275F	C10orf129_uc009xuu.1_Missense_Mutation_p.S185F	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	275					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GGATCTTTATCCCTGAGCGCT	0.468													17	33					0	0	0.000958276	0	0
SORBS1	10580	broad.mit.edu	37	10	97096857	97096857	+	Silent	SNP	G	A	A	rs142455784		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:97096857G>A	uc001kkp.2	-	28	3105	c.3060C>T	c.(3058-3060)CAC>CAT	p.H1020H	SORBS1_uc001kkk.2_Intron|SORBS1_uc001kkl.2_Intron|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Intron|SORBS1_uc001kkq.2_Intron|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Silent_p.H974H|SORBS1_uc010qoe.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1020					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		ACAAGGCGAGGTGGTCAGTGT	0.597													44	97					0	0	0.000437636	0	0
DNTT	1791	broad.mit.edu	37	10	98092300	98092300	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:98092300C>T	uc001kmf.2	+	9	1476	c.1306C>T	c.(1306-1308)CTG>TTG	p.L436L	DNTT_uc001kmg.2_Silent_p.L436L	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	436	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		GGATTTAGTTCTGTGCCCCTA	0.527													48	51					0	0	0.000781405	0	0
LCOR	84458	broad.mit.edu	37	10	98715083	98715083	+	Nonsense_Mutation	SNP	C	T	T	rs150929680		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:98715083C>T	uc001kms.1	+	8	1227	c.706C>T	c.(706-708)CAA>TAA	p.Q236*	LCOR_uc001kmr.2_Nonsense_Mutation_p.Q236*|C10orf12_uc009xvg.1_Intron|LCOR_uc001kmt.1_Nonsense_Mutation_p.Q236*|LCOR_uc001kmu.1_Nonsense_Mutation_p.Q236*	NM_032440	NP_115816	Q96JN0	LCOR_HUMAN	ligand dependent nuclear receptor corepressor	236						nucleus	DNA binding			ovary(3)	3		Colorectal(252;0.162)		Epithelial(162;4.43e-09)|all cancers(201;2.96e-07)		AATGGCACTTCAAGCAAAACA	0.438													52	123					0	0	0.000781405	0	0
C10orf62	414157	broad.mit.edu	37	10	99349981	99349982	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:99349981_99349982CC>TT	uc001koa.2	+	1	498_499	c.327_328CC>TT	c.(325-330)ATCCAC>ATTTAC	p.H110Y	DHDPSL_uc001knx.2_Intron|DHDPSL_uc001kny.2_Intron|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_001009997	NP_001009997	Q5T681	CJ062_HUMAN	hypothetical protein LOC414157	110							protein binding				0		Colorectal(252;0.162)		Epithelial(162;9.58e-11)|all cancers(201;8.62e-09)		TCCAAGAGATCCACCAGGAGTC	0.619													140	297					0	0	6.4e-05	0	0
ABCC2	1244	broad.mit.edu	37	10	101578932	101578932	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:101578932A>C	uc001kqf.2	+	19	2665	c.2526A>C	c.(2524-2526)AAA>AAC	p.K842N		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	842	Cytoplasmic (By similarity).|ABC transporter 1.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TTGTAGAGAAAGGATCCTACA	0.413													3	131					0	0	0.00116845	0	0
CHUK	1147	broad.mit.edu	37	10	101977836	101977836	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:101977836G>A	uc001kqp.2	-	9	904	c.849C>T	c.(847-849)GAC>GAT	p.D283D		NM_001278	NP_001269	O15111	IKKA_HUMAN	conserved helix-loop-helix ubiquitous kinase	283	Protein kinase.				I-kappaB phosphorylation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|nucleus	ATP binding|identical protein binding|IkappaB kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|breast(1)	7		Colorectal(252;0.117)		Epithelial(162;2.05e-10)|all cancers(201;1.91e-08)		TCTGCTGAGGGTCCCAATTCA	0.368													75	120					0	0	0.000781405	0	0
WNT8B	7479	broad.mit.edu	37	10	102241672	102241672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:102241672G>A	uc001krb.2	+	5	485	c.371G>A	c.(370-372)GGA>GAA	p.G124E		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	124					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		TTTCCAGGGGGACAAGGCTGG	0.607											OREG0020440	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	150	210					0	0	0.000781405	0	0
C10orf76	79591	broad.mit.edu	37	10	103755071	103755071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:103755071G>A	uc009xwy.1	-	16	1294	c.1192C>T	c.(1192-1194)CTT>TTT	p.L398F		NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591	398						integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		ATACATGTAAGGATAATCAGA	0.418													68	87					0	0	0.000781405	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105362047	105362047	+	Silent	SNP	C	A	A	rs148878459		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:105362047C>A	uc001kxj.1	-	14	2984	c.2844G>T	c.(2842-2844)GCG>GCT	p.A948A	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_Silent_p.A783A|SH3PXD2A_uc010qqt.1_Silent_p.A825A|SH3PXD2A_uc009xxn.1_Silent_p.A783A|SH3PXD2A_uc010qqu.1_Silent_p.A891A	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	976					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		GGGGCCTGACCGCCACCTGCC	0.657													162	216					1.7288e-48	1.21757e-47	0.000781405	1	0
SLK	9748	broad.mit.edu	37	10	105778666	105778666	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:105778666G>A	uc001kxo.1	+	15	3166	c.3132G>A	c.(3130-3132)AAG>AAA	p.K1044K	SLK_uc001kxp.1_Silent_p.K1013K	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	1044	Potential.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GCCACGAGAAGGTTAATGAAA	0.323													67	109					0	0	0.000781405	0	0
CCDC147	159686	broad.mit.edu	37	10	106118174	106118174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:106118174G>A	uc001kyh.2	+	2	219	c.85G>A	c.(85-87)GAA>AAA	p.E29K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	29										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		AGTTCTCCATGAACTTTCTGG	0.393													97	133					0	0	0.000781405	0	0
SORCS3	22986	broad.mit.edu	37	10	106849544	106849544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:106849544G>A	uc001kyi.1	+	6	1267	c.1040G>A	c.(1039-1041)GGA>GAA	p.G347E		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	347	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TCGGTGGCCGGATTGGATAAG	0.587													33	45					0	0	0.000953801	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111648338	111648338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:111648338G>A	uc001kyp.1	-	6	442	c.302C>T	c.(301-303)CCA>CTA	p.P101L	XPNPEP1_uc009xxt.1_Missense_Mutation_p.P144L|XPNPEP1_uc001kyq.1_Missense_Mutation_p.P30L|XPNPEP1_uc010qrb.1_Missense_Mutation_p.P144L	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	101					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		TTCCTGAGTTGGTGTGTCCTT	0.488													9	21					0	0	0.000673444	0	0
DUSP5	1847	broad.mit.edu	37	10	112266753	112266753	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:112266753T>G	uc001kzd.2	+	3	844	c.589T>G	c.(589-591)TGC>GGC	p.C197G		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	197	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		TGCATCCAAGTGCGAGTTCCT	0.547													294	613					0	0	0.000781405	0	0
VWA2	340706	broad.mit.edu	37	10	116037803	116037803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:116037803C>T	uc001lbl.1	+	7	1018	c.697C>T	c.(697-699)CCA>TCA	p.P233S	VWA2_uc001lbk.1_Missense_Mutation_p.P233S|VWA2_uc009xyf.1_5'UTR	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	233						extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		CAGCGCCACGCCAGGTAAGAT	0.647													49	140					0	0	0.000781405	0	0
SLC18A2	6571	broad.mit.edu	37	10	119003629	119003629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:119003629G>A	uc001ldd.1	+	3	300	c.269G>A	c.(268-270)GGG>GAG	p.G90E	SLC18A2_uc009xyy.1_5'UTR	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	90	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	ATGGTCACCGGGAATGCTACC	0.537													156	338					0	0	0.000781405	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122334746	122334746	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:122334746C>T	uc001lev.1	+	6	901	c.549C>T	c.(547-549)ATC>ATT	p.I183I	PPAPDC1A_uc010qtd.1_Silent_p.I183I|PPAPDC1A_uc009xzl.1_Silent_p.I120I|PPAPDC1A_uc001lew.1_Missense_Mutation_p.S90F|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_Silent_p.I62I	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	183	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		GTGCTGCCATCCTGCCCTTGT	0.607													48	101					0	0	0.000781405	0	0
FGFR2	2263	broad.mit.edu	37	10	123244982	123244982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:123244982G>A	uc010qtk.1	-	17	2769	c.2122C>T	c.(2122-2124)CCC>TCC	p.P708S	FGFR2_uc010qtg.1_Missense_Mutation_p.P596S|FGFR2_uc010qth.1_Missense_Mutation_p.P593S|FGFR2_uc010qti.1_Missense_Mutation_p.P619S|FGFR2_uc010qtj.1_Missense_Mutation_p.P709S|FGFR2_uc010qtl.1_Missense_Mutation_p.P592S|FGFR2_uc010qtm.1_Missense_Mutation_p.P591S|FGFR2_uc001lfl.3_Missense_Mutation_p.P709S|FGFR2_uc001lfm.2_Missense_Mutation_p.P620S|FGFR2_uc001lfg.3_Missense_Mutation_p.P316S|FGFR2_uc001lfk.1_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	708	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding	p.P708S(1)		endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	TCCTCCACGGGAATCCCTGGG	0.522		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				65	144					0	0	0.000781405	0	0
FGFR2	2263	broad.mit.edu	37	10	123245004	123245004	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:123245004C>T	uc010qtk.1	-	17	2747	c.2100G>A	c.(2098-2100)GGG>GGA	p.G700G	FGFR2_uc010qtg.1_Silent_p.G588G|FGFR2_uc010qth.1_Silent_p.G585G|FGFR2_uc010qti.1_Silent_p.G611G|FGFR2_uc010qtj.1_Silent_p.G701G|FGFR2_uc010qtl.1_Silent_p.G584G|FGFR2_uc010qtm.1_Silent_p.G583G|FGFR2_uc001lfl.3_Silent_p.G701G|FGFR2_uc001lfm.2_Silent_p.G612G|FGFR2_uc001lfg.3_Silent_p.G308G|FGFR2_uc001lfk.1_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	700	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding	p.G701S(1)		endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	AGGGCGAGCCCCCTAAAGTGA	0.502		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				49	127					0	0	0.000781405	0	0
FGFR2	2263	broad.mit.edu	37	10	123256077	123256077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:123256077G>A	uc010qtk.1	-	14	2479	c.1832C>T	c.(1831-1833)GCC>GTC	p.A611V	FGFR2_uc010qtg.1_Missense_Mutation_p.A499V|FGFR2_uc010qth.1_Missense_Mutation_p.A496V|FGFR2_uc010qti.1_Missense_Mutation_p.A522V|FGFR2_uc010qtj.1_Missense_Mutation_p.A612V|FGFR2_uc010qtl.1_Missense_Mutation_p.A495V|FGFR2_uc010qtm.1_Missense_Mutation_p.A494V|FGFR2_uc001lfl.3_Missense_Mutation_p.A612V|FGFR2_uc001lfm.2_Missense_Mutation_p.A523V|FGFR2_uc001lfg.3_Missense_Mutation_p.A219V	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	611	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CATGCCTCTGGCCAGCTGGTA	0.493		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				155	354					0	0	0.000781405	0	0
HTRA1	5654	broad.mit.edu	37	10	124273729	124273729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124273729G>A	uc001lgj.2	+	9	1425	c.1297G>A	c.(1297-1299)GTC>ATC	p.V433I		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	433	PDZ.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				GGAAAACGACGTCATAATCAG	0.493													290	527					0	0	0.000781405	0	0
DMBT1	1755	broad.mit.edu	37	10	124358299	124358299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124358299C>T	uc001lgk.1	+	26	3072	c.2966C>T	c.(2965-2967)TCC>TTC	p.S989F	DMBT1_uc001lgl.1_Missense_Mutation_p.S979F|DMBT1_uc001lgm.1_Missense_Mutation_p.S490F|DMBT1_uc009xzz.1_Missense_Mutation_p.S989F|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	989					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGATCTGAATCCAGTTTGGCC	0.537													282	563					0	0	0.000781405	0	0
DMBT1	1755	broad.mit.edu	37	10	124377595	124377595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124377595G>A	uc001lgk.1	+	38	4673	c.4567G>A	c.(4567-4569)GAG>AAG	p.E1523K	DMBT1_uc001lgl.1_Missense_Mutation_p.E1513K|DMBT1_uc001lgm.1_Missense_Mutation_p.E895K|DMBT1_uc009xzz.1_Missense_Mutation_p.E1523K|DMBT1_uc010qtx.1_Missense_Mutation_p.E374K|DMBT1_uc009yab.1_Missense_Mutation_p.E226K|DMBT1_uc009yac.1_5'Flank	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1523	SRCR 12.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AGGCCGAGTGGAGGTCCTATA	0.582													326	535					0	0	0.000781405	0	0
DMBT1	1755	broad.mit.edu	37	10	124377832	124377832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124377832G>A	uc001lgk.1	+	38	4910	c.4804G>A	c.(4804-4806)GAA>AAA	p.E1602K	DMBT1_uc001lgl.1_Missense_Mutation_p.E1592K|DMBT1_uc001lgm.1_Missense_Mutation_p.E974K|DMBT1_uc009xzz.1_Missense_Mutation_p.E1602K|DMBT1_uc010qtx.1_Missense_Mutation_p.E453K|DMBT1_uc009yab.1_Missense_Mutation_p.E305K|DMBT1_uc009yac.1_5'Flank	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1602	SRCR 12.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGGCCATCATGAAGATGCTGG	0.512													65	137					0	0	0.000781405	0	0
DMBT1	1755	broad.mit.edu	37	10	124392781	124392781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124392781C>T	uc001lgk.1	+	49	6191	c.6085C>T	c.(6085-6087)CCA>TCA	p.P2029S	DMBT1_uc001lgl.1_Missense_Mutation_p.P2019S|DMBT1_uc001lgm.1_Missense_Mutation_p.P1401S|DMBT1_uc009xzz.1_Missense_Mutation_p.P2028S|DMBT1_uc010qtx.1_Missense_Mutation_p.P749S|DMBT1_uc009yab.1_Missense_Mutation_p.P732S|DMBT1_uc009yac.1_Missense_Mutation_p.P323S	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2029	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CGGGAACTATCCAAACAATGC	0.493													87	225					0	0	0.000781405	0	0
LOC399815	399815	broad.mit.edu	37	10	124647793	124647793	+	Silent	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124647793T>A	uc001lgu.3	+	7	1060	c.162T>A	c.(160-162)ATT>ATA	p.I54I	LOC399815_uc010qua.1_Silent_p.I16I					RecName: Full=Putative uncharacterized C10orf88-like protein;												0						AGAATTGTATTCCTATTGAAG	0.343													23	42					0	0	0.000586117	0	0
FAM24A	118670	broad.mit.edu	37	10	124671195	124671195	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:124671195C>T	uc001lgv.2	+	2	166	c.45C>T	c.(43-45)ATC>ATT	p.I15I		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	15						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		TGATCGGCATCGGAAGCAGCT	0.498													57	134					0	0	0.000781405	0	0
GPR26	2849	broad.mit.edu	37	10	125447574	125447574	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:125447574C>T	uc001lhh.2	+	3	965	c.912C>T	c.(910-912)AGC>AGT	p.S304S		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	304	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				ACCGCAAAAGCTGCAAGGAGA	0.587													105	257					0	0	0.000781405	0	0
ZRANB1	54764	broad.mit.edu	37	10	126670317	126670317	+	Silent	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:126670317T>A	uc001lic.2	+	6	1838	c.1467T>A	c.(1465-1467)TCT>TCA	p.S489S	ZRANB1_uc010qug.1_Silent_p.S515S	NM_017580	NP_060050	Q9UGI0	ZRAN1_HUMAN	zinc finger, RAN-binding domain containing 1	489	OTU.|TRAF-binding.				positive regulation of Wnt receptor signaling pathway|protein K63-linked deubiquitination|Wnt receptor signaling pathway	aggresome|centrosome|intermediate filament cytoskeleton|nucleolus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.172)		Colorectal(40;0.113)|COAD - Colon adenocarcinoma(40;0.119)		CATGGTATTCTCAGAGCTTTG	0.348													42	81					0	0	0.000781405	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218293	134218293	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:134218293A>C	uc001lll.3	+	2	318	c.289A>C	c.(289-291)ACC>CCC	p.T97P	PWWP2B_uc009ybe.2_Missense_Mutation_p.T97P	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	97	Pro-rich.										0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		CCCCGAGACCACCCGCCCCGA	0.756													15	136					0	0	0.000491102	0	0
Unknown	0	broad.mit.edu	37	10	134626288	134626288	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:134626288C>T	uc010qux.1	-	47	6679	c.6679_splice	c.e47+1	p.E2227_splice		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		ACACCTCTCACCTTGCAAGTT	0.612													252	408					0	0	0.000781405	0	0
KNDC1	85442	broad.mit.edu	37	10	135020665	135020665	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:135020665C>T	uc001llz.1	+	20	3605	c.3604C>T	c.(3604-3606)CTG>TTG	p.L1202L	KNDC1_uc001lma.1_3'UTR	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1202					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		ACGCTGGGGCCTGGAGCCCTG	0.657													59	77					0	0	0.000781405	0	0
ZNF511	118472	broad.mit.edu	37	10	135123719	135123720	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:135123719_135123720CG>AT	uc001lml.1	+	4	506_507	c.481_482CG>AT	c.(481-483)CGG>ATG	p.R161M	TUBGCP2_uc001lmg.1_5'Flank|TUBGCP2_uc010qvc.1_5'Flank|TUBGCP2_uc009ybk.1_5'Flank|TUBGCP2_uc010qvd.1_5'Flank|TUBGCP2_uc001lmh.1_Intron|ZNF511_uc001lmj.1_Missense_Mutation_p.R161M|ZNF511_uc001lmk.1_Missense_Mutation_p.R161M|ZNF511_uc001lmm.1_RNA			Q8NB15	ZN511_HUMAN	SubName: Full=cDNA FLJ78327; SubName: Full=Zinc finger protein 511, isoform CRA_d;	161	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.56e-06)|OV - Ovarian serous cystadenocarcinoma(35;8.15e-06)|Epithelial(32;9.99e-06)		CAGCAGAGACCGGAAGGATCAC	0.569													13	862					0	0	6.4e-05	0	0
SYCE1	93426	broad.mit.edu	37	10	135369180	135369180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:135369180C>T	uc001lno.2	-	11	856	c.751G>A	c.(751-753)GAG>AAG	p.E251K	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_Missense_Mutation_p.E123K|SYCE1_uc009ybn.2_Missense_Mutation_p.E251K|SYCE1_uc001lnn.2_Missense_Mutation_p.E215K	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	251	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		AGGAGCTCCTCAGCCTTCCTG	0.438													73	162					0	0	0.000781405	0	0
LOC653544	653544	broad.mit.edu	37	10	135491124	135491124	+	Silent	SNP	C	T	T	rs144321616	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:135491124C>T	uc010qvi.1	+	1	846	c.735C>T	c.(733-735)GGC>GGT	p.G245G		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	245						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCCACACCGGCGCGTGGGGAA	0.786													10	238					0	0	0.00058488	0	0
PKP3	11187	broad.mit.edu	37	11	397181	397181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:397181G>A	uc001lpc.2	+	3	756	c.680G>A	c.(679-681)GGG>GAG	p.G227E		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	227					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGCCGGGCAGGGGGGCTGGAC	0.711													145	139					0	0	0.000781405	0	0
DEAF1	10522	broad.mit.edu	37	11	654029	654029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:654029C>T	uc001lqq.1	-	11	2219	c.1526G>A	c.(1525-1527)CGG>CAG	p.R509Q	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	509	MYND-type.				embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		CATAGCCTCCCGGCCGCAGTT	0.627													148	163					0	0	0.000781405	0	0
TALDO1	6888	broad.mit.edu	37	11	758967	758967	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:758967T>A	uc001lqz.2	+	3	289	c.239T>A	c.(238-240)ATT>AAT	p.I80N	TALDO1_uc010qwl.1_Missense_Mutation_p.I80N|TALDO1_uc001lra.2_Missense_Mutation_p.I80N	NM_006755	NP_006746	P37837	TALDO_HUMAN	transaldolase 1	80					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;4.66e-26)|Epithelial(43;2.97e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.48e-19)|BRCA - Breast invasive adenocarcinoma(625;4.41e-05)|Lung(200;0.0595)|LUSC - Lung squamous cell carcinoma(625;0.0712)		GAGGACCAGATTAAAAATGCT	0.328													397	485					0	0	0.000781405	0	0
LRDD	55367	broad.mit.edu	37	11	803208	803208	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:803208G>A	uc001lro.1	-	3	817	c.675C>T	c.(673-675)GCC>GCT	p.A225A	LRDD_uc009yck.1_5'Flank|LRDD_uc001lrk.1_Silent_p.A225A|LRDD_uc001lrl.1_Silent_p.A79A|LRDD_uc001lrm.1_5'UTR|LRDD_uc001lrn.1_Silent_p.A79A|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	225	LRR 5.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCGGTTGGAGGCCAGGTTGA	0.652													146	155					0	0	0.000781405	0	0
MUC2	4583	broad.mit.edu	37	11	1087447	1087447	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:1087447G>A	uc001lsx.1	+	24	3225	c.3198G>A	c.(3196-3198)GTG>GTA	p.V1066V		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1066						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTCCCCAGGTGGACCCCAAGC	0.672													97	256					0	0	0.000781405	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629200	1629200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:1629200G>A	uc001ltw.1	-	1	494	c.416C>T	c.(415-417)TCA>TTA	p.S139L		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	139	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		CCCACAGCCTGAGGAGCAGCA	0.547													184	682					0	0	0.000781405	0	0
TRIM21	6737	broad.mit.edu	37	11	4407465	4407465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:4407465C>T	uc001lyy.1	-	6	894	c.781G>A	c.(781-783)GAC>AAC	p.D261N		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	261					cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		ATATCCAGGTCCTTCAGGTTC	0.507													11	33					0	0	0.000673444	0	0
OR52K1	390036	broad.mit.edu	37	11	4510322	4510323	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:4510322_4510323TC>GT	uc001lza.1	+	1	192_193	c.192_193TC>GT	c.(190-195)TTTCTG>TTGTTG	p.F64L		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGTACCTCTTTCTGGCCATGTT	0.485													22	27					0	0	6.4e-05	0	0
OR52M1	119772	broad.mit.edu	37	11	4566873	4566873	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:4566873C>T	uc010qyf.1	+	1	453	c.453C>T	c.(451-453)CTC>CTT	p.L151L		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGTTTCTCTCCTCCGGGGTG	0.527													6	44					0	0	0.00116845	0	0
OR51D1	390038	broad.mit.edu	37	11	4661414	4661414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:4661414G>A	uc010qyk.1	+	1	394	c.394G>A	c.(394-396)GCT>ACT	p.A132T		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	132	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGGCCATGGCTTTTGACCG	0.562													25	42					0	0	0.000375601	0	0
OR51F1	256892	broad.mit.edu	37	11	4790956	4790956	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:4790956G>A	uc010qyl.1	-	1	192	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	64						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		GCCTGAAGAGGAAATAATACA	0.433													25	60					0	0	0.000878237	0	0
OR51A2	401667	broad.mit.edu	37	11	4976213	4976213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:4976213G>A	uc010qyt.1	-	1	731	c.731C>T	c.(730-732)TCA>TTA	p.S244L		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGATGTGTGAAACACAAGT	0.478													35	192					0	0	0.000814825	0	0
OR52A1	23538	broad.mit.edu	37	11	5172912	5172912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5172912G>A	uc010qyy.1	-	1	688	c.688C>T	c.(688-690)CGT>TGT	p.R230C		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGCAAACGAAAAACTGTG	0.423													46	156					0	0	0.000509022	0	0
OR51B2	79345	broad.mit.edu	37	11	5345040	5345040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5345040G>A	uc001mao.1	-	1	543	c.488C>T	c.(487-489)TCA>TTA	p.S163L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATATGAAAATGAAAAAAGACG	0.398													4	24					0	0	0.00024832	0	0
OR51B2	79345	broad.mit.edu	37	11	5345263	5345263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5345263C>T	uc001mao.1	-	1	320	c.265G>A	c.(265-267)GAG>AAG	p.E89K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGCTAATCTCCCTGTGATTC	0.493													12	28					0	0	0.000978159	0	0
OR51B5	282763	broad.mit.edu	37	11	5364499	5364499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5364499C>T	uc001map.1	-	1	256	c.256G>A	c.(256-258)GAT>AAT	p.D86N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.D86N	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCCTGTGATCCAGCCAGAGG	0.557													6	13					0	0	0.00116845	0	0
OR51B5	282763	broad.mit.edu	37	11	5364578	5364578	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5364578G>A	uc001map.1	-	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Silent_p.F59F	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGCCAGAAAGAAGTACATGG	0.507													14	16					0	0	0.000219431	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444253	5444253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5444253C>T	uc010qzd.1	+	1	823	c.823C>T	c.(823-825)CAT>TAT	p.H275Y	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCACTGGTCCATGTTATCAT	0.473													231	149					0	0	0.000781405	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537200	5537200	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5537200T>C	uc001maz.3	-	1	757	c.472A>G	c.(472-474)AAA>GAA	p.K158E	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	158										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		GTATGCACTTTGGGTGCATCA	0.512													27	30					0	0	0.000586117	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5624743	5624743	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5624743C>G	uc001mbf.2	+	2	529	c.285C>G	c.(283-285)AAC>AAG	p.N95K	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.N67K|TRIM6_uc010qzj.1_Intron|TRIM6_uc001mbc.1_Missense_Mutation_p.N67K|TRIM6_uc001mbe.2_Intron|TRIM6_uc010qzk.1_Intron|TRIM6_uc010qzl.1_Intron|TRIM6_uc001mbd.2_Missense_Mutation_p.N95K|TRIM6_uc001mbg.1_5'Flank|TRIM6_uc009yep.1_5'Flank	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	95						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		AGCCAGGGAACCTGCGGCCTA	0.562													53	154					0	0	0.000781405	0	0
OR56A3	390083	broad.mit.edu	37	11	5969381	5969381	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:5969381A>G	uc010qzt.1	+	1	805	c.805A>G	c.(805-807)AAG>GAG	p.K269E		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATGTGGCTAAGAAGAAAGT	0.517													109	420					0	0	0.000781405	0	0
OR52L1	338751	broad.mit.edu	37	11	6007457	6007457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6007457G>A	uc001mcd.2	-	1	759	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	235	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGGGCATAGGAAACACCAAT	0.517													80	254					0	0	0.000781405	0	0
OR56A4	120793	broad.mit.edu	37	11	6024169	6024169	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6024169G>A	uc010qzv.1	-	1	210	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGAAGCAGATGAGGAGGA	0.532													72	66					0	0	0.000781405	0	0
OR56A1	120796	broad.mit.edu	37	11	6048713	6048713	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6048713G>A	uc010qzw.1	-	1	222	c.222C>T	c.(220-222)TCC>TCT	p.S74S		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTCCAGCAGGGAGAGGAGGC	0.592													18	45					0	0	0.000175454	0	0
CCKBR	887	broad.mit.edu	37	11	6291139	6291139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6291139C>T	uc001mcp.2	+	2	585	c.392C>T	c.(391-393)TCC>TTC	p.S131F	CCKBR_uc001mcq.2_Missense_Mutation_p.S59F|CCKBR_uc001mcr.2_Missense_Mutation_p.S131F|CCKBR_uc001mcs.2_Missense_Mutation_p.S131F	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	131	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	AAGGCGGTTTCCTACCTCATG	0.602													202	214					0	0	0.000781405	0	0
APBB1	322	broad.mit.edu	37	11	6424924	6424924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6424924C>T	uc001mdb.1	-	3	950	c.850G>A	c.(850-852)GGC>AGC	p.G284S	APBB1_uc001mcz.1_5'Flank|APBB1_uc001mdd.3_Missense_Mutation_p.G64S|APBB1_uc001mda.2_Intron|APBB1_uc001mdc.1_Missense_Mutation_p.G284S|APBB1_uc010rab.1_5'Flank|APBB1_uc010rac.1_5'Flank|APBB1_uc010rad.1_5'Flank|APBB1_uc010rae.1_Missense_Mutation_p.G49S|APBB1_uc010raf.1_Missense_Mutation_p.G25S|APBB1_uc009yfa.2_Missense_Mutation_p.G25S|APBB1_uc009yey.2_Missense_Mutation_p.G25S|APBB1_uc010rag.1_Missense_Mutation_p.G25S|APBB1_uc009yfb.2_Missense_Mutation_p.G25S|APBB1_uc001mde.2_Missense_Mutation_p.G25S|APBB1_uc010rah.1_Missense_Mutation_p.G25S	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	284	WW.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		GAGGCCCGGCCGGGGGGTTCC	0.652													239	302					0	0	0.000781405	0	0
DCHS1	8642	broad.mit.edu	37	11	6646552	6646552	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6646552C>T	uc001mem.1	-	19	7433	c.7023G>A	c.(7021-7023)CAG>CAA	p.Q2341Q		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	2341	Cadherin 22.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCGGTCACACTGCTCAAAGT	0.602													197	182					0	0	0.000781405	0	0
OR2D2	120776	broad.mit.edu	37	11	6913093	6913093	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6913093C>T	uc010rau.1	-	1	639	c.639G>A	c.(637-639)CTG>CTA	p.L213L		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATACCAGAATCAGAAAAACAG	0.473													7	17					0	0	8.12818e-05	0	0
NLRP14	338323	broad.mit.edu	37	11	7064277	7064277	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:7064277C>T	uc001mfb.1	+	4	1343	c.1020C>T	c.(1018-1020)TAC>TAT	p.Y340Y		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	340	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AGTATATTTACCAGTTTTTTG	0.413													15	57					0	0	0.000422831	0	0
OR5P2	120065	broad.mit.edu	37	11	7817549	7817549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:7817549C>T	uc001mfp.1	-	1	941	c.941G>A	c.(940-942)AGT>AAT	p.S314N		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGAAGTTCTACTAAAATAACA	0.373													47	37					0	0	0.000781405	0	0
NLRP10	338322	broad.mit.edu	37	11	7981382	7981382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:7981382C>T	uc001mfv.1	-	2	1794	c.1777G>A	c.(1777-1779)GAA>AAA	p.E593K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	593							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GATTTCTTTTCATTTGAATGT	0.368													52	91					0	0	0.000781405	0	0
EIF3F	8665	broad.mit.edu	37	11	8016890	8016890	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:8016890G>A	uc001mfw.2	+	7	1005	c.972G>A	c.(970-972)GAG>GAA	p.E324E	EIF3F_uc010rbj.1_Silent_p.E175E	NM_003754	NP_003745	O00303	EIF3F_HUMAN	eukaryotic translation initiation factor 3,	324						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			lung(1)	1				Epithelial(150;1.44e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ATGACTTTGAGACCATGCTCA	0.493													287	255					0	0	0.000781405	0	0
IPO7	10527	broad.mit.edu	37	11	9462133	9462133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:9462133G>A	uc001mho.2	+	23	2969	c.2827G>A	c.(2827-2829)GAA>AAA	p.E943K		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	943	Asp-rich.				interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		GACTGCTCTGGAAGGCTATTC	0.393													64	65					0	0	0.000781405	0	0
MRVI1	10335	broad.mit.edu	37	11	10647749	10647749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:10647749C>T	uc010rcc.1	-	9	1518	c.1132G>A	c.(1132-1134)GCT>ACT	p.A378T	MRVI1_uc001miw.2_Missense_Mutation_p.A369T|MRVI1_uc010rcb.1_Missense_Mutation_p.A370T|MRVI1_uc009ygb.1_Missense_Mutation_p.A63T|MRVI1_uc001mix.2_Missense_Mutation_p.A63T|MRVI1_uc001miz.2_Missense_Mutation_p.A287T|MRVI1_uc009ygc.1_Missense_Mutation_p.A287T|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_Missense_Mutation_p.A63T|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	351					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GGAAGCTCAGCTTTGGAGCCA	0.692													66	82					0	0	0.000781405	0	0
PTPN5	84867	broad.mit.edu	37	11	18764004	18764004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:18764004G>A	uc001mpd.2	-	7	961	c.530C>T	c.(529-531)CCC>CTC	p.P177L	PTPN5_uc001mpb.2_Missense_Mutation_p.P145L|PTPN5_uc001mpc.2_Missense_Mutation_p.P177L|PTPN5_uc001mpe.2_Missense_Mutation_p.P145L|PTPN5_uc010rdj.1_Missense_Mutation_p.P121L|PTPN5_uc001mpf.2_Missense_Mutation_p.P153L|PTPN5_uc010rdk.1_Missense_Mutation_p.P122L	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	177						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						GTCCTCAGGGGGCAGTGGGGT	0.642													70	185					0	0	0.000781405	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955414	18955414	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:18955414C>T	uc001mpg.2	-	1	1136	c.918G>A	c.(916-918)GGG>GGA	p.G306G		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	306	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CAGGAAGCTGCCCTCCACCTT	0.567													99	101					0	0	0.000781405	0	0
FANCF	2188	broad.mit.edu	37	11	22646992	22646992	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:22646992C>A	uc001mql.1	-	1	396	c.365G>T	c.(364-366)CGG>CTG	p.R122L		NM_022725	NP_073562	Q9NPI8	FANCF_HUMAN	Fanconi anemia, complementation group F	122					DNA repair	nucleoplasm	protein binding			skin(1)	1						ATCGGCGTCCCGGACGCCCGG	0.657			N|F			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia		OREG0020844	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	871					3.45872e-05	0.000240338	0.000422831	1	0
LUZP2	338645	broad.mit.edu	37	11	25004772	25004772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:25004772C>T	uc001mqs.2	+	9	932	c.698C>T	c.(697-699)CCA>CTA	p.P233L	LUZP2_uc009yif.2_Missense_Mutation_p.P147L|LUZP2_uc009yig.2_Missense_Mutation_p.P191L	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	233						extracellular region				ovary(1)|skin(1)	2						ACATCAAATCCAACTCGGATG	0.453													18	25					0	0	0.00074312	0	0
MUC15	143662	broad.mit.edu	37	11	26584715	26584715	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:26584715C>T	uc001mqx.2	-	3	1058	c.792G>A	c.(790-792)AGG>AGA	p.R264R	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Silent_p.R291R|MUC15_uc001mqy.2_Intron	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	264	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AATCCGTTTTCCTTTTTCCAC	0.388													12	23					0	0	0.000151284	0	0
HIPK3	10114	broad.mit.edu	37	11	33308557	33308557	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:33308557C>T	uc001mul.1	+	2	867	c.597C>T	c.(595-597)GTC>GTT	p.V199V	HIPK3_uc001mum.1_Silent_p.V199V|HIPK3_uc009yjv.1_Silent_p.V199V	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	199	Protein kinase.				anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						CTTACGAAGTCCTTGATTTTC	0.393													45	54					0	0	0.000509022	0	0
C11orf41	25758	broad.mit.edu	37	11	33667329	33667329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:33667329C>T	uc001mup.3	+	16	4758	c.4634C>T	c.(4633-4635)TCC>TTC	p.S1545F		NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1539						integral to membrane				ovary(2)	2						TCGGAGACCTCCACACTGAGC	0.602													137	557					0	0	0.000781405	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34097853	34097853	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:34097853T>G	uc001mvh.1	+	5	626	c.437T>G	c.(436-438)TTA>TGA	p.L146*	CAPRIN1_uc001mvg.2_Nonsense_Mutation_p.L146*|CAPRIN1_uc001mvi.2_Nonsense_Mutation_p.L146*|CAPRIN1_uc001mvj.1_Nonsense_Mutation_p.L65*	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	146	Potential.				negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				CAGAAACGTTTAAAAACTGTA	0.388													73	53					0	0	0.000781405	0	0
PAMR1	25891	broad.mit.edu	37	11	35492367	35492367	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:35492367C>T	uc001mwg.2	-	5	538	c.495_splice	c.e5-1	p.R165_splice	PAMR1_uc001mwf.2_Splice_Site_p.R165_splice|PAMR1_uc010rew.1_Intron|PAMR1_uc010rex.1_Splice_Site_p.R125_splice	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform						proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CATGACAAATCTGTGGGTGGA	0.547													4	14					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	11	43284006	43284006	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:43284006C>T	uc001mxe.1	-	2		c.930G>A								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		TCCCAAGTTTCATCAGCACTG	0.473													6	11					0	0	0.000157383	0	0
ACCSL	390110	broad.mit.edu	37	11	44072949	44072949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:44072949G>A	uc001mxw.1	+	4	756	c.700G>A	c.(700-702)GAA>AAA	p.E234K	ACCSL_uc009ykr.2_Missense_Mutation_p.E53K	NM_001031854	NP_001027025	Q4AC99	1A1L2_HUMAN	1-aminocyclopropane-1-carboxylate synthase	234							1-aminocyclopropane-1-carboxylate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(5)	5						ACTTGACCCAGAAAATGTGAG	0.567													77	68					0	0	0.000781405	0	0
OR4B1	119765	broad.mit.edu	37	11	48238452	48238452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:48238452C>T	uc010rhs.1	+	1	91	c.91C>T	c.(91-93)CCC>TCC	p.P31S		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						GGTGTTTCTCCCCGTGTACCT	0.502													89	111					0	0	0.000781405	0	0
OR4A47	403253	broad.mit.edu	37	11	48511177	48511177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:48511177C>T	uc010rhx.1	+	1	833	c.833C>T	c.(832-834)CCA>CTA	p.P278L		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTCATAACCCCAATGCTGAAC	0.398													9	36					0	0	0.000274275	0	0
FOLH1	2346	broad.mit.edu	37	11	49178313	49178313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:49178313G>A	uc001ngy.2	-	15	1840	c.1579C>T	c.(1579-1581)CGA>TGA	p.R527*	FOLH1_uc001ngx.2_5'Flank|FOLH1_uc001ngz.2_Nonsense_Mutation_p.R527*|FOLH1_uc009yly.2_Nonsense_Mutation_p.R512*|FOLH1_uc009ylz.2_Nonsense_Mutation_p.R512*|FOLH1_uc009yma.2_Nonsense_Mutation_p.R219*	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	527	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	ATTCCAAGTCGTTGGAAGAAC	0.303													22	85					0	0	0.00127121	0	0
FOLH1	2346	broad.mit.edu	37	11	49207377	49207377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:49207377C>T	uc001ngy.2	-	6	931	c.670G>A	c.(670-672)GGA>AGA	p.G224R	FOLH1_uc001ngz.2_Missense_Mutation_p.G224R|FOLH1_uc009yly.2_Missense_Mutation_p.G209R|FOLH1_uc009ylz.2_Missense_Mutation_p.G209R|FOLH1_uc009yma.2_Intron	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	224	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	AGAATGACTCCTTTGGCCCCT	0.453													28	103					0	0	0.000279167	0	0
LOC441601	441601	broad.mit.edu	37	11	50246832	50246832	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:50246832C>T	uc001nhd.2	-	4		c.633G>A				NR_003034				Homo sapiens septin 7 pseudogene, transcript variant 2, mRNA (cDNA clone IMAGE:5265802).												0						TCCTGCTCACCTGTTTTTTAA	0.373													13	19					0	0	0.000151284	0	0
LOC646813	646813	broad.mit.edu	37	11	50379745	50379745	+	RNA	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:50379745C>G	uc001nhe.2	+	6		c.1228C>G			LOC646813_uc001nhf.1_Intron|LOC646813_uc001nhg.1_Intron|LOC646813_uc001nhh.1_Intron|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						GGGAAGCCATCAGTACCAGAT	0.388													2	5					0	0	6.4e-05	0	0
OR4A15	81328	broad.mit.edu	37	11	55135452	55135452	+	Missense_Mutation	SNP	G	A	A	rs149233751		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55135452G>A	uc010rif.1	+	1	93	c.93G>A	c.(91-93)ATG>ATA	p.M31I		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	31	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.M31I(1)		ovary(1)|skin(1)	2						AAGAACACATGAAAAATAAGA	0.388													6	5					0	0	0.00116845	0	0
OR4C15	81309	broad.mit.edu	37	11	55322224	55322224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55322224G>A	uc010rig.1	+	1	442	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CATCTCTTTTGAAGGCTGCAT	0.483										HNSCC(20;0.049)			12	48					0	0	0.000219431	0	0
OR4C15	81309	broad.mit.edu	37	11	55322738	55322738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55322738C>T	uc010rig.1	+	1	956	c.956C>T	c.(955-957)TCC>TTC	p.S319F		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTGCTTTTTCCCTTGACAAA	0.403										HNSCC(20;0.049)			32	37					0	0	0.000491102	0	0
OR5L1	219437	broad.mit.edu	37	11	55579712	55579712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55579712C>T	uc001nhw.1	+	1	770	c.770C>T	c.(769-771)TCC>TTC	p.S257F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				ACAGTCCTTTCCATTTATTGC	0.512													36	141					0	0	0.00111076	0	0
OR5L1	219437	broad.mit.edu	37	11	55579833	55579833	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55579833G>A	uc001nhw.1	+	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				ATAAAGATGTGAAAGAAGCTC	0.458													42	50					0	0	0.000680045	0	0
OR5L2	26338	broad.mit.edu	37	11	55594973	55594973	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55594973C>T	uc001nhy.1	+	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				AAGCCATCTCCTTCCTAGGGT	0.458										HNSCC(27;0.073)			12	73					0	0	0.000151284	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735136	55735136	+	Silent	SNP	G	A	A	rs144396433		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55735136G>A	uc010rit.1	-	1	804	c.804C>T	c.(802-804)TTC>TTT	p.F268F		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	268	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					GAATGGTGTAGAAAAGAGAAA	0.343													18	70					0	0	0.000566183	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735289	55735289	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55735289C>T	uc010rit.1	-	1	651	c.651G>A	c.(649-651)TTG>TTA	p.L217L		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	217	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ATGACAATTTCAAAATGTTGG	0.393													24	40					0	0	0.000295444	0	0
OR5F1	338674	broad.mit.edu	37	11	55762055	55762055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:55762055C>T	uc010riv.1	-	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					GTCTGCTAATCCCAATAGGAC	0.348													43	58					0	0	0.000781405	0	0
APLNR	187	broad.mit.edu	37	11	57004260	57004260	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:57004260C>T	uc001njo.2	-	1	668	c.219G>A	c.(217-219)GTG>GTA	p.V73V	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	73	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TCAGGTCAGCCACCGCCAGGC	0.612													159	184					0	0	0.000781405	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57068486	57068486	+	Silent	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:57068486A>C	uc001njr.2	-	9	5313	c.5001T>G	c.(4999-5001)GCT>GCG	p.A1667A	TNKS1BP1_uc001njp.2_Silent_p.A239A|TNKS1BP1_uc001njq.2_Silent_p.A240A|TNKS1BP1_uc001njs.2_Silent_p.A1667A	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1667	Arg/Glu/Lys-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CTCCCTCCTCAGCTGAGCGAT	0.592													105	120					0	0	0.000781405	0	0
OR5A2	219981	broad.mit.edu	37	11	59189564	59189564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:59189564G>A	uc010rkt.1	-	1	863	c.863C>T	c.(862-864)CCC>CTC	p.P288L		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTAGATGATGGGATTCACCAC	0.463													4	34					0	0	0.000602214	0	0
TMEM109	79073	broad.mit.edu	37	11	60689575	60689575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:60689575G>A	uc001nqg.2	+	4	1048	c.670G>A	c.(670-672)GAG>AAG	p.E224K	TMEM109_uc001nqh.2_Missense_Mutation_p.E224K|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	224						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						ACGCCAGGTGGAGGAGCTGCG	0.687													121	111					0	0	0.000781405	0	0
RPLP0P2	113157	broad.mit.edu	37	11	61404442	61404442	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:61404442G>A	uc001nrz.1	+	5	1046	c.291G>A	c.(289-291)GAG>GAA	p.E97E		NR_002775				SubName: Full=cDNA FLJ51469, highly similar to 60S acidic ribosomal protein P0;												0						ACCTCACTGAGATCAGGGACC	0.582													24	78					0	0	0.000375601	0	0
SCGB1D1	10648	broad.mit.edu	37	11	61959676	61959676	+	Silent	SNP	G	A	A	rs140077440		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:61959676G>A	uc001nsz.1	+	2	251	c.204G>A	c.(202-204)ACG>ACA	p.T68T		NM_006552	NP_006543	O95968	SG1D1_HUMAN	lipophilin A precursor	68						extracellular space	binding			skin(1)	1						GCGTGGATACGATGGCCTATG	0.438													46	39					0	0	0.000781405	0	0
TUT1	64852	broad.mit.edu	37	11	62346322	62346323	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:62346322_62346323CC>TT	uc001nto.2	-	5	1022_1023	c.984_985GG>AA	c.(982-987)CCGGAC>CCAAAC	p.D329N	TUT1_uc001ntp.1_5'Flank	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	291	Pro-rich.				mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						AAGGCAGAGTCCGGAGTTTGGG	0.619													165	172					0	0	6.4e-05	0	0
SLC22A8	9376	broad.mit.edu	37	11	62782229	62782229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:62782229C>T	uc001nwo.2	-	2	338	c.202G>A	c.(202-204)GGG>AGG	p.G68R	SLC22A8_uc001nwp.2_Missense_Mutation_p.G68R|SLC22A8_uc009yom.2_Intron|SLC22A8_uc010rmm.1_Intron|SLC22A8_uc009yon.2_Missense_Mutation_p.G68R	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	68	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						TCAGGCTTCCCATTTGGGCCC	0.632													428	466					0	0	0.000781405	0	0
SLC22A25	387601	broad.mit.edu	37	11	62996845	62996845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:62996845G>A	uc001nwr.1	-	1	280	c.280C>T	c.(280-282)CCC>TCC	p.P94S	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.P94S	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	94	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TTCCACTGGGGATGGACAAAG	0.537													5	35					0	0	0.000602214	0	0
SLC22A10	387775	broad.mit.edu	37	11	63064812	63064812	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:63064812C>T	uc009yor.2	+	3	752	c.544C>T	c.(544-546)CAG>TAG	p.Q182*	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	182	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GTGTTTGCTCCAGCTTGCCAT	0.418													19	16					0	0	0.000229342	0	0
SLC22A10	387775	broad.mit.edu	37	11	63067078	63067078	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:63067078G>A	uc009yor.2	+	6	1255	c.1047G>A	c.(1045-1047)AGG>AGA	p.R349R	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Silent_p.R189R	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	349	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TGCGTAAAAGGATCTGTATCC	0.418													15	7					0	0	0.000566183	0	0
VEGFB	7423	broad.mit.edu	37	11	64005048	64005048	+	Silent	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64005048A>C	uc001nyw.2	+	6	607	c.567A>C	c.(565-567)GGA>GGC	p.G189G	VEGFB_uc001nyx.2_Missense_Mutation_p.T156P	NM_003377	NP_003368	P49765	VEGFB_HUMAN	vascular endothelial growth factor B precursor	189					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding				0						TGACCCCCGGACCTGCCGCTG	0.711													11	78					0	0	0.00058488	0	0
TRMT112	51504	broad.mit.edu	37	11	64084949	64084949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64084949C>T	uc001nzt.2	-	1	85	c.50G>A	c.(49-51)GGG>GAG	p.G17E	PRDX5_uc001nzu.2_5'Flank|PRDX5_uc001nzv.2_5'Flank|PRDX5_uc001nzw.2_5'Flank|PRDX5_uc001nzx.2_5'Flank	NM_016404	NP_057488	Q9UI30	TR112_HUMAN	tRNA methyltransferase 11-2 homolog	17	TRM112.				peptidyl-glutamine methylation	protein complex	protein binding|protein methyltransferase activity				0						GCCACGGGACCCCACCCCCCG	0.652													30	105					0	0	0.001512	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64136992	64136992	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64136992C>T	uc001oae.2	+	13	1586	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F	RPS6KA4_uc001oad.2_Silent_p.F495F|RPS6KA4_uc010rnl.1_Silent_p.F438F|RPS6KA4_uc001oaf.2_Silent_p.F494F|RPS6KA4_uc009ypp.2_Intron	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	501	Protein kinase 2.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						AGCGGCACTTCAGCGAGTCGG	0.692													78	88					0	0	0.000781405	0	0
PYGM	5837	broad.mit.edu	37	11	64519430	64519430	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64519430G>A	uc001oax.3	-	14	2551	c.1734C>T	c.(1732-1734)CTC>CTT	p.L578L	PYGM_uc001oay.3_Silent_p.L490L	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	578					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	GGCAGTTGAGGAGCTGTCGTT	0.512													154	451					0	0	0.000781405	0	0
PYGM	5837	broad.mit.edu	37	11	64525731	64525731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64525731G>A	uc001oax.3	-	4	1332	c.515C>T	c.(514-516)TCC>TTC	p.S172F	PYGM_uc001oay.3_Missense_Mutation_p.S84F	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	172					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	CCAGCCCCCGGAGATCTTCTG	0.552													204	673					0	0	0.000781405	0	0
ATG2A	23130	broad.mit.edu	37	11	64669436	64669437	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64669436_64669437GG>AA	uc001obx.2	-	29	4231_4232	c.4116_4117CC>TT	c.(4114-4119)ATCCCG>ATTTCG	p.P1373S	ATG2A_uc001obw.2_Missense_Mutation_p.P138S	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1373							protein binding			ovary(1)|central_nervous_system(1)	2						CCACGCACCGGGATGCCCAGGC	0.609													205	294					0	0	6.4e-05	0	0
NAALADL1	10004	broad.mit.edu	37	11	64812753	64812753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64812753G>A	uc001ocn.2	-	18	2229	c.2213C>T	c.(2212-2214)GCT>GTT	p.A738V	NAALADL1_uc010rnw.1_Missense_Mutation_p.A214V	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	738	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						TCAGAGGTCAGCCACAGGCCT	0.592													47	136					0	0	0.000781405	0	0
MALAT1	378938	broad.mit.edu	37	11	65266878	65266878	+	RNA	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:65266878T>C	uc010roh.1	+	1		c.1646T>C			MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GGGCAATGCTTTTAGATTAAA	0.299													48	50					0	0	0.000781405	0	0
MALAT1	378938	broad.mit.edu	37	11	65267853	65267853	+	RNA	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:65267853A>G	uc010roh.1	+	1		c.2621A>G			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						ACTAGCATTAATTGACAGCTG	0.393													166	185					0	0	0.000781405	0	0
LTBP3	4054	broad.mit.edu	37	11	65313968	65313968	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:65313968G>A	uc001oej.2	-	16	2567	c.2298C>T	c.(2296-2298)TTC>TTT	p.F766F	LTBP3_uc001oef.2_5'Flank|LTBP3_uc001oeg.2_5'UTR|LTBP3_uc001oeh.2_Silent_p.F196F|LTBP3_uc010roi.1_Silent_p.F649F|LTBP3_uc001oei.2_Silent_p.F766F|LTBP3_uc010roj.1_Silent_p.F467F|LTBP3_uc010rok.1_Silent_p.F677F	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	766	Cys-rich.|EGF-like 6; calcium-binding (Potential).					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						AGGTGCAGCGGAAGGAGCCCG	0.746													117	120					0	0	0.000781405	0	0
MAP3K11	4296	broad.mit.edu	37	11	65367187	65367188	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:65367187_65367188GG>AA	uc001oew.2	-	9	2376_2377	c.1883_1884CC>TT	c.(1882-1884)CCC>CTT	p.P628L	MAP3K11_uc001oev.2_Missense_Mutation_p.P44L|MAP3K11_uc010rol.1_Missense_Mutation_p.P371L|MAP3K11_uc001oex.1_Missense_Mutation_p.P135L	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	628	Pro-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CGCGCTCTGCGGGGACAGGCCT	0.728													31	103					0	0	6.4e-05	0	0
PACS1	55690	broad.mit.edu	37	11	66006668	66006668	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:66006668C>G	uc001oha.1	+	21	2483	c.2349C>G	c.(2347-2349)CCC>CCG	p.P783P	PACS1_uc010rou.1_Silent_p.P319P	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	783					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						CATCACCACCCTCCAGCTCGG	0.632													188	266					0	0	0.000781405	0	0
ACTN3	89	broad.mit.edu	37	11	66328765	66328765	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:66328765A>T	uc001oio.1	+	17	1946	c.1928A>T	c.(1927-1929)GAG>GTG	p.E643V	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	643					focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						CAGGTAAACGAGAGGCTCCGG	0.637													65	90					0	0	0.000781405	0	0
CABP4	57010	broad.mit.edu	37	11	67222957	67222957	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:67222957C>T	uc001olo.2	+	1	140	c.63C>T	c.(61-63)CCC>CCT	p.P21P	GPR152_uc001olm.2_5'Flank|CABP4_uc001oln.2_Intron	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	21					visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			GTCAGAAGCCCCCTGCGGGGG	0.632													67	198					0	0	0.000781405	0	0
ANO1	55107	broad.mit.edu	37	11	70003090	70003090	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:70003090C>G	uc001opj.2	+	16	1846	c.1541C>G	c.(1540-1542)CCA>CGA	p.P514R	ANO1_uc001opk.1_Missense_Mutation_p.P456R|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.P223R	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	514	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						GATCGGTTCCCAGCCTACCTC	0.488													4	188					0	0	0.00116845	0	0
SHANK2	22941	broad.mit.edu	37	11	70338455	70338455	+	Silent	SNP	C	T	T	rs143774841	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:70338455C>T	uc001oqc.2	-	18	2502	c.2424G>A	c.(2422-2424)GCG>GCA	p.A808A	SHANK2_uc010rqn.1_Silent_p.A220A|SHANK2_uc001opz.2_Silent_p.A213A|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Silent_p.A210A|SHANK2_uc001opy.2_5'UTR|SHANK2_uc010rqo.1_Silent_p.A21A	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	429					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TGTCTGAGCCCGCCGGGAAGC	0.677													96	306					0	0	0.000781405	0	0
NUMA1	4926	broad.mit.edu	37	11	71715117	71715117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:71715117C>T	uc001orl.1	-	26	6324	c.6152G>A	c.(6151-6153)AGC>AAC	p.S2051N	IL18BP_uc009ysu.1_Intron|NUMA1_uc001orj.2_Missense_Mutation_p.S233N|NUMA1_uc009ysw.1_Missense_Mutation_p.S1618N|NUMA1_uc001ork.1_Missense_Mutation_p.S915N|NUMA1_uc001orm.1_Missense_Mutation_p.S2037N	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	2051					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						GTTGAGGATGCTGAAGGCCAT	0.627			T	RARA	APL								334	393					0	0	0.000781405	0	0
INPPL1	3636	broad.mit.edu	37	11	71940600	71940600	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:71940600C>T	uc001osf.2	+	6	898	c.751C>T	c.(751-753)CAG>TAG	p.Q251*	INPPL1_uc001osg.2_Nonsense_Mutation_p.Q9*	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	251					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						TTTGCAGCAGCAGGTAGATTG	0.577													212	693					0	0	0.000781405	0	0
ARAP1	116985	broad.mit.edu	37	11	72408418	72408418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:72408418G>A	uc001osu.2	-	21	3092	c.2903C>T	c.(2902-2904)TCG>TTG	p.S968L	ARAP1_uc001osv.2_Missense_Mutation_p.S968L|ARAP1_uc001osr.2_Missense_Mutation_p.S728L|ARAP1_uc001oss.2_Missense_Mutation_p.S723L|ARAP1_uc009yth.2_Missense_Mutation_p.S662L|ARAP1_uc010rre.1_Missense_Mutation_p.S723L	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	968	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CGGGATATCCGAGTCCCCAAG	0.682													458	493					0	0	0.000781405	0	0
DNAJB13	374407	broad.mit.edu	37	11	73681102	73681102	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:73681102C>T	uc001ouo.2	+	8	1645	c.894C>T	c.(892-894)TTC>TTT	p.F298F		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	298					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					ACATCCAGTTCCCCACCCGCC	0.597													381	388					0	0	0.000781405	0	0
USP35	57558	broad.mit.edu	37	11	77910659	77910659	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:77910659C>T	uc009yva.1	+	4	1071	c.825C>T	c.(823-825)TCC>TCT	p.S275S	USP35_uc001oze.2_Silent_p.S31S|USP35_uc001ozc.2_Intron|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_Intron|USP35_uc001ozf.2_Silent_p.S6S	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	275					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			ACTGGGTGTCCTGGCCCCTGG	0.547													461	456					0	0	0.000781405	0	0
ODZ4	26011	broad.mit.edu	37	11	78383140	78383140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:78383140C>T	uc001ozl.3	-	31	6194	c.5731G>A	c.(5731-5733)GGC>AGC	p.G1911S	ODZ4_uc001ozk.3_Missense_Mutation_p.G136S|ODZ4_uc009yvb.1_Missense_Mutation_p.G495S	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1911	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTGATGCGGCCCGCCTGGTCG	0.537													57	150					0	0	0.000781405	0	0
ODZ4	26011	broad.mit.edu	37	11	78387371	78387371	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:78387371G>C	uc001ozl.3	-	30	5785	c.5322C>G	c.(5320-5322)AAC>AAG	p.N1774K	ODZ4_uc001ozk.3_5'UTR|ODZ4_uc009yvb.1_Missense_Mutation_p.N358K	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1774	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCTCCATGCCGTTGGCCAGCA	0.632													134	162					0	0	0.000781405	0	0
ODZ4	26011	broad.mit.edu	37	11	78443510	78443510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:78443510C>T	uc001ozl.3	-	21	3452	c.2989G>A	c.(2989-2991)GAA>AAA	p.E997K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	997	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATGATGGTTTCCATGACAAAG	0.552													19	26					0	0	0.00074312	0	0
ODZ4	26011	broad.mit.edu	37	11	78482078	78482078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:78482078G>A	uc001ozl.3	-	18	2961	c.2498C>T	c.(2497-2499)TCC>TTC	p.S833F		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	833	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AGTCTCCATGGAAGTGTCACA	0.612													8	5					0	0	0.000157383	0	0
ANKRD42	338699	broad.mit.edu	37	11	82935899	82935899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:82935899C>T	uc001ozz.1	+	6	927	c.505C>T	c.(505-507)CAC>TAC	p.H169Y	ANKRD42_uc010rsv.1_Missense_Mutation_p.H197Y|ANKRD42_uc001paa.2_Missense_Mutation_p.H197Y|ANKRD42_uc001pab.1_Missense_Mutation_p.H196Y	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	169	ANK 5.									skin(1)	1						TCCTCTAGTTCACTTAGCAGC	0.264													85	65					0	0	0.000781405	0	0
SYTL2	54843	broad.mit.edu	37	11	85420485	85420485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:85420485C>T	uc010rth.1	-	12	2165	c.1889G>A	c.(1888-1890)GGA>GAA	p.G630E	SYTL2_uc010rtg.1_Missense_Mutation_p.G631E|SYTL2_uc010rti.1_Missense_Mutation_p.G606E|SYTL2_uc010rtj.1_Missense_Mutation_p.G598E|SYTL2_uc001pav.2_Missense_Mutation_p.G72E|SYTL2_uc010rte.1_Missense_Mutation_p.G32E|SYTL2_uc001pax.2_Missense_Mutation_p.G72E|SYTL2_uc001paz.2_5'UTR|SYTL2_uc001pba.2_Missense_Mutation_p.G15E|SYTL2_uc001pay.2_Missense_Mutation_p.G61E|SYTL2_uc001paw.2_Missense_Mutation_p.G32E|SYTL2_uc009yvj.2_RNA|SYTL2_uc001pbd.2_Missense_Mutation_p.G928E|SYTL2_uc001pbb.2_Missense_Mutation_p.G968E|SYTL2_uc001pbc.2_Missense_Mutation_p.G952E|SYTL2_uc010rtf.1_Missense_Mutation_p.G448E	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	630	C2 1.				intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		CTGAATATTTCCTTTAACTTC	0.398													51	152					0	0	0.000781405	0	0
SYTL2	54843	broad.mit.edu	37	11	85468696	85468696	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:85468696G>A	uc010rth.1	-	1	349	c.73C>T	c.(73-75)CTG>TTG	p.L25L	SYTL2_uc010rtg.1_Silent_p.L25L|SYTL2_uc010rti.1_Silent_p.L25L|SYTL2_uc010rtj.1_Intron|SYTL2_uc001pbf.3_Silent_p.L25L	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	25	RabBD.				intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		GCCCTCTTCAGAGCAGCATCC	0.478													48	161					0	0	0.000781405	0	0
HEPHL1	341208	broad.mit.edu	37	11	93822030	93822030	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:93822030G>A	uc001pep.2	+	12	2347	c.2190G>A	c.(2188-2190)GGG>GGA	p.G730G	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	730	Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AGCGGTACGGGATGATAAGAA	0.527													136	181					0	0	0.000781405	0	0
KDM4D	55693	broad.mit.edu	37	11	94731230	94731230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:94731230C>T	uc001pfe.2	+	3	1526	c.694C>T	c.(694-696)CCA>TCA	p.P232S		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	232	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GGAGCTCTTCCCAGGCAGTTC	0.582													60	204					0	0	0.000781405	0	0
ENDOD1	23052	broad.mit.edu	37	11	94862602	94862602	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:94862602C>T	uc001pfh.2	+	2	1437	c.1362C>T	c.(1360-1362)GAC>GAT	p.D454D		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	454						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				TTTGCAAGGACATTGCACTGG	0.527													79	83					0	0	0.000781405	0	0
CNTN5	53942	broad.mit.edu	37	11	99690324	99690324	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:99690324A>G	uc001pga.2	+	4	444	c.105A>G	c.(103-105)TTA>TTG	p.L35L	CNTN5_uc009ywv.1_Silent_p.L35L|CNTN5_uc001pfz.2_Silent_p.L35L|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	35					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTGCTTTGTTAAGAATTAAGA	0.368													116	309					0	0	0.000781405	0	0
CNTN5	53942	broad.mit.edu	37	11	100179193	100179193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:100179193G>A	uc001pga.2	+	21	3062	c.2723G>A	c.(2722-2724)GGA>GAA	p.G908E	CNTN5_uc001pfz.2_Missense_Mutation_p.G908E|CNTN5_uc001pgb.2_Missense_Mutation_p.G834E|CNTN5_uc010ruk.1_Missense_Mutation_p.G179E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	908	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGACCACAGGGATTTGAGGTA	0.423													13	41					0	0	0.000422831	0	0
PGR	5241	broad.mit.edu	37	11	100999653	100999653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:100999653G>A	uc001pgh.2	-	1	892	c.149C>T	c.(148-150)GCC>GTC	p.A50V	PGR_uc001pgi.2_Missense_Mutation_p.A50V|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	50	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	GATAGGTATGGCCGAAACTTC	0.677													116	121					0	0	0.000781405	0	0
TRPC6	7225	broad.mit.edu	37	11	101375371	101375371	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:101375371T>C	uc001pgk.3	-	2	754	c.329A>G	c.(328-330)AAC>AGC	p.N110S	TRPC6_uc009ywy.2_Missense_Mutation_p.N110S|TRPC6_uc009ywz.1_Missense_Mutation_p.N110S	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	110	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CACTGGGATGTTACCATATTC	0.468													34	53					0	0	0.000409698	0	0
KIAA1377	57562	broad.mit.edu	37	11	101833960	101833960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:101833960G>A	uc001pgm.2	+	6	2464	c.2194G>A	c.(2194-2196)GAA>AAA	p.E732K	KIAA1377_uc001pgn.2_Missense_Mutation_p.E688K|KIAA1377_uc010run.1_Missense_Mutation_p.E533K|KIAA1377_uc009yxa.1_Missense_Mutation_p.E533K	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	732							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		CTCAAAAAAAGAAGAAAGTAA	0.378													4	19					0	0	0.000602214	0	0
MMP10	4319	broad.mit.edu	37	11	102650355	102650355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:102650355C>T	uc001phg.1	-	2	249	c.227G>A	c.(226-228)GGG>GAG	p.G76E		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	76					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		GTCTAGCTTCCCTGTCACCTC	0.483													19	67					0	0	0.00121646	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103025222	103025222	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:103025222C>T	uc001pho.2	+	23	3489	c.3345C>T	c.(3343-3345)TCC>TCT	p.S1115S	DYNC2H1_uc001phn.1_Silent_p.S1115S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1115	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CTAATTTCTCCCTGGCAAGTA	0.333													6	10					0	0	0.000274275	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103027349	103027349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:103027349C>T	uc001pho.2	+	26	4121	c.3977C>T	c.(3976-3978)TCA>TTA	p.S1326L	DYNC2H1_uc001phn.1_Missense_Mutation_p.S1326L|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1326	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GATAAAGTATCAATTTGGGAA	0.348													28	15					0	0	0.000878237	0	0
ATM	472	broad.mit.edu	37	11	108155011	108155011	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:108155011G>A	uc001pkb.1	+	26	4189	c.3804G>A	c.(3802-3804)GTG>GTA	p.V1268V	ATM_uc009yxr.1_Silent_p.V1268V	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1268					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTGATGAGGTGAAGTCCATTG	0.308			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			9	35					0	0	0.000442599	0	0
ANKK1	255239	broad.mit.edu	37	11	113269692	113269692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:113269692G>A	uc001pny.2	+	8	1095	c.1001G>A	c.(1000-1002)GGA>GAA	p.G334E		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	334							ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		GCAGACTCAGGAAACTACCTG	0.542													6	26					0	0	8.12818e-05	0	0
BUD13	84811	broad.mit.edu	37	11	116633924	116633924	+	Silent	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:116633924A>T	uc001ppn.2	-	4	415	c.381T>A	c.(379-381)TCT>TCA	p.S127S	BUD13_uc001ppo.2_Silent_p.S127S|BUD13_uc009yzc.2_Silent_p.S127S	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	127										large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		CCCTCCTAGGAGATGAATCCG	0.527													454	464					0	0	0.000781405	0	0
MLL	4297	broad.mit.edu	37	11	118373290	118373290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:118373290C>T	uc001pta.2	+	27	6697	c.6674C>T	c.(6673-6675)TCC>TTC	p.S2225F	MLL_uc001ptb.2_Missense_Mutation_p.S2228F	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2225					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AATAATGTTTCCTCAGTCTCC	0.468			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								78	77					0	0	0.000781405	0	0
ABCG4	64137	broad.mit.edu	37	11	119027056	119027056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:119027056C>T	uc001pvs.2	+	7	1040	c.704C>T	c.(703-705)TCT>TTT	p.S235F	ABCG4_uc009zar.2_Missense_Mutation_p.S235F	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	235	Cytoplasmic (Potential).|ABC transporter.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GATAGCGCCTCTTGTTTCCAA	0.602													226	675					0	0	0.000781405	0	0
CCDC153	283152	broad.mit.edu	37	11	119061483	119061483	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:119061483T>C	uc010rze.1	-	6	504	c.416A>G	c.(415-417)CAG>CGG	p.Q139R		NM_001145018	NP_001138490	Q494R4	CC153_HUMAN	coiled-coil domain containing 153	139	Potential.										0						AGCCAGGGCCTGGTCCCGCTC	0.612													6	451					0	0	0.00116845	0	0
TRIM29	23650	broad.mit.edu	37	11	120008368	120008368	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:120008368C>T	uc001pwz.2	-	1	496	c.372G>A	c.(370-372)AAG>AAA	p.K124K	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	124					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		GCAGCTCGCCCTTTTCGGCAA	0.632													459	484					0	0	0.000781405	0	0
SORL1	6653	broad.mit.edu	37	11	121477909	121477909	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:121477909G>A	uc001pxx.2	+	37	5156	c.5076G>A	c.(5074-5076)AGG>AGA	p.R1692R	SORL1_uc010rzp.1_Silent_p.R538R|SORL1_uc010rzq.1_Silent_p.R307R	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1692	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AATACAGCAGGAGTGGTTCCA	0.458													28	169					0	0	0.000279167	0	0
UBASH3B	84959	broad.mit.edu	37	11	122647763	122647763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:122647763G>A	uc001pyi.3	+	3	607	c.247G>A	c.(247-249)GAT>AAT	p.D83N		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	83						cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		CCCCTTCCTGGATGACCCCCT	0.547													53	60					0	0	0.000781405	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123448136	123448136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:123448136C>T	uc001pyx.2	+	2	414	c.85C>T	c.(85-87)CGC>TGC	p.R29C	GRAMD1B_uc001pyw.2_Missense_Mutation_p.R29C|GRAMD1B_uc010rzw.1_5'UTR|GRAMD1B_uc010rzx.1_5'UTR|GRAMD1B_uc009zbe.1_Missense_Mutation_p.R25C	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	29						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		GAAGCGGTCTCGCTCGCCAAC	0.657											OREG0021454	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	44					0	0	0.000409698	0	0
VWA5A	4013	broad.mit.edu	37	11	123993780	123993780	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:123993780A>G	uc001pzu.2	+	8	1083	c.874A>G	c.(874-876)ATG>GTG	p.M292V	VWA5A_uc001pzr.2_Missense_Mutation_p.M292V|VWA5A_uc001pzs.2_Missense_Mutation_p.M292V|VWA5A_uc010sae.1_Missense_Mutation_p.M308V|VWA5A_uc001pzt.2_Missense_Mutation_p.M292V	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	292	VWFA.									upper_aerodigestive_tract(1)|ovary(1)	2						CTCGGGAAGTATGCAGAGCCC	0.463													23	96					0	0	0.000229342	0	0
OR8B2	26595	broad.mit.edu	37	11	124253044	124253044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:124253044G>A	uc010sai.1	-	1	196	c.196C>T	c.(196-198)CTC>TTC	p.L66F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATGAAGGAGAGATTGAAGAGG	0.398													26	35					0	0	0.000878237	0	0
OR8B3	390271	broad.mit.edu	37	11	124266729	124266729	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:124266729G>A	uc010saj.1	-	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AATGGTTGATGATATTAGCAC	0.483													56	53					0	0	0.000781405	0	0
ROBO3	64221	broad.mit.edu	37	11	124749423	124749423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:124749423C>T	uc001qbc.2	+	25	3940	c.3748C>T	c.(3748-3750)CGG>TGG	p.R1250W	ROBO3_uc001qbd.2_Missense_Mutation_p.R175W|ROBO3_uc010sar.1_Missense_Mutation_p.R299W|ROBO3_uc001qbe.2_Missense_Mutation_p.R175W|ROBO3_uc001qbf.1_Missense_Mutation_p.R134W	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	1250	Cytoplasmic (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		TGCTCGATTCCGGAAGAAACC	0.607													41	150					0	0	0.000437636	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128842602	128842602	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:128842602C>A	uc009zcp.2	-	21	3757	c.3757G>T	c.(3757-3759)GAA>TAA	p.E1253*	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Nonsense_Mutation_p.E212*|ARHGAP32_uc001qez.2_Nonsense_Mutation_p.E904*	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1253					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GTATTCTCTTCGGGGGACCCA	0.483													8	797					0.000673444	0.0046179	0.000673444	1	0
ADAMTS15	170689	broad.mit.edu	37	11	130342957	130342957	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:130342957C>T	uc010scd.1	+	8	2094	c.2094C>T	c.(2092-2094)TTC>TTT	p.F698F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	698	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GCTACAATTTCGTGGTGGCCA	0.582													286	334					0	0	0.000781405	0	0
KDM5A	5927	broad.mit.edu	37	12	463244	463244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:463244C>T	uc001qif.1	-	8	1390	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	KDM5A_uc001qie.1_Missense_Mutation_p.E343K|KDM5A_uc010sdn.1_Missense_Mutation_p.E302K|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	343	PHD-type 1.				chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						ACGTGTACCTCGGCGACACAT	0.373			T 	NUP98	AML								21	66					0	0	0.000229342	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3763391	3763391	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:3763391G>A	uc001qmj.2	-	10	1605	c.1033C>T	c.(1033-1035)CAA>TAA	p.Q345*	EFCAB4B_uc010sen.1_Nonsense_Mutation_p.Q345*|EFCAB4B_uc010seo.1_Nonsense_Mutation_p.Q345*|EFCAB4B_uc001qmi.1_RNA	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	345	Potential.				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			TCCTTCTCTTGGTGGAGTTTG	0.493													80	93					0	0	0.000781405	0	0
C12orf5	57103	broad.mit.edu	37	12	4446225	4446225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:4446225C>T	uc001qmp.2	+	3	170	c.91C>T	c.(91-93)CTT>TTT	p.L31F		NM_020375	NP_065108	Q9NQ88	TIGAR_HUMAN	TP53-induced glycolysis and apoptosis regulator	31						intracellular	fructose-2,6-bisphosphate 2-phosphatase activity			skin(1)	1			all cancers(3;1.15e-07)|Colorectal(7;0.00165)|OV - Ovarian serous cystadenocarcinoma(31;0.00596)|COAD - Colon adenocarcinoma(12;0.0229)|GBM - Glioblastoma multiforme(3;0.0266)|STAD - Stomach adenocarcinoma(119;0.206)			AGATGAACCTCTTTCAGAAAC	0.343													40	120					0	0	0.000509022	0	0
DYRK4	8798	broad.mit.edu	37	12	4702284	4702284	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:4702284A>C	uc001qmx.2	+	4	395	c.235A>C	c.(235-237)AAA>CAA	p.K79Q	DYRK4_uc009zeh.1_Missense_Mutation_p.K194Q|DYRK4_uc001qmy.1_Missense_Mutation_p.K79Q	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	79						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			GGCTCCTGAGAAATTTAGCAA	0.532													50	56					0	0	0.000781405	0	0
ANO2	57101	broad.mit.edu	37	12	5708727	5708727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:5708727G>A	uc001qnm.2	-	21	2228	c.2156C>T	c.(2155-2157)TCG>TTG	p.S719L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	724	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TGGATGTTTCGAATGGGCAGA	0.453													66	76					0	0	0.000781405	0	0
SCNN1A	6337	broad.mit.edu	37	12	6471223	6471223	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:6471223T>C	uc001qnx.2	-	4	1158	c.869A>G	c.(868-870)AAC>AGC	p.N290S	SCNN1A_uc001qnv.2_Intron|SCNN1A_uc001qnw.2_Missense_Mutation_p.N349S|SCNN1A_uc010sfb.1_Missense_Mutation_p.N313S	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	290	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	TCACGCCTGGTTGCAGGAGAC	0.632													331	309					0	0	0.000781405	0	0
CHD4	1108	broad.mit.edu	37	12	6700684	6700684	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:6700684G>A	uc001qpo.2	-	22	3452	c.3288C>T	c.(3286-3288)ATC>ATT	p.I1096I	CHD4_uc001qpn.2_Silent_p.I1089I|CHD4_uc001qpp.2_Silent_p.I1093I	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1096	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TTCCACCATCGATGCGTTCGT	0.433													192	168					0	0	0.000781405	0	0
ACRBP	84519	broad.mit.edu	37	12	6753378	6753378	+	Missense_Mutation	SNP	C	T	T	rs150132385		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:6753378C>T	uc001qpu.1	-	5	917	c.869G>A	c.(868-870)CGA>CAA	p.R290Q	ACRBP_uc010sfg.1_Missense_Mutation_p.R257Q	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	290						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						CTGGGCTGATCGAATGAGCTC	0.428													290	334					0	0	0.000781405	0	0
CD163L1	283316	broad.mit.edu	37	12	7527893	7527893	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:7527893G>A	uc001qsy.2	-	11	3011	c.2985C>T	c.(2983-2985)GTC>GTT	p.V995V	CD163L1_uc010sge.1_Silent_p.V1005V	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	995	SRCR 9.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGATCACAGAGACAGTATTTC	0.433													20	59					0	0	0.000175454	0	0
CD163L1	283316	broad.mit.edu	37	12	7528442	7528443	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:7528442_7528443CC>TT	uc001qsy.2	-	10	2565_2566	c.2539_2540GG>AA	c.(2539-2541)GGA>AAA	p.G847K	CD163L1_uc010sge.1_Missense_Mutation_p.G857K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	847	SRCR 8.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AAAGTGATCTCCCACAGAAAGA	0.46													82	88					0	0	6.4e-05	0	0
CD163	9332	broad.mit.edu	37	12	7651770	7651770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:7651770C>T	uc001qsz.3	-	4	600	c.472G>A	c.(472-474)GAA>AAA	p.E158K	CD163_uc001qta.3_Missense_Mutation_p.E158K|CD163_uc009zfw.2_Missense_Mutation_p.E158K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	158	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AGCCTCATTTCCAAATTGGAT	0.413													20	69					0	0	0.000229342	0	0
CLEC2B	9976	broad.mit.edu	37	12	10010159	10010159	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:10010159T>C	uc001qwn.2	-	3	808	c.151A>G	c.(151-153)AAA>GAA	p.K51E		NM_005127	NP_005118	Q92478	CLC2B_HUMAN	C-type lectin, superfamily member 2	51	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding				0						CCTTCTTCTTTAGAGAAATAA	0.318													8	37					0	0	0.000157383	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978338	10978338	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:10978338C>A	uc001qyy.1	-	1	531	c.531G>T	c.(529-531)TTG>TTT	p.L177F		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	177	Extracellular (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						CCAGATTTAGCAAAATCTGTT	0.323													13	25					5.50884e-06	3.83994e-05	0.00136819	1	0
GUCY2C	2984	broad.mit.edu	37	12	14778842	14778842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:14778842G>A	uc001rcd.2	-	21	2394	c.2257C>T	c.(2257-2259)CAT>TAT	p.H753Y		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	753	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TTTTGGTCATGAAAAAGTCTG	0.239													5	22					0	0	8.12818e-05	0	0
GUCY2C	2984	broad.mit.edu	37	12	14827660	14827660	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:14827660C>A	uc001rcd.2	-	8	1120	c.983G>T	c.(982-984)GGA>GTA	p.G328V	GUCY2C_uc009zhz.2_Missense_Mutation_p.G328V	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	328	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GAGCAGGATTCCATTCAAATA	0.348													21	42					2.4624e-09	1.72103e-08	0.00121646	1	0
EPS8	2059	broad.mit.edu	37	12	15823810	15823810	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:15823810T>A	uc009zif.2	-	4	278	c.184A>T	c.(184-186)ATA>TTA	p.I62L	EPS8_uc001rdb.2_Missense_Mutation_p.I62L|EPS8_uc009zig.2_5'UTR	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	62					cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		TATTGAGATATATCTGACACA	0.368													36	42					0	0	0.000319135	0	0
PDE3A	5139	broad.mit.edu	37	12	20774250	20774250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:20774250C>T	uc001reh.1	+	5	1467	c.1445C>T	c.(1444-1446)CCA>CTA	p.P482L		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	482					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TGGAATAATCCAGTGATGATG	0.388													6	5					0	0	0.000157383	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036506	21036506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:21036506G>A	uc001rek.2	+	12	1778	c.1652G>A	c.(1651-1653)GGA>GAA	p.G551E	SLCO1B3_uc001rel.2_Missense_Mutation_p.G551E|SLCO1B3_uc010sil.1_Missense_Mutation_p.G551E|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G376E	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	551	Helical; Name=10; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TCTGCAACAGGAGGTACCACA	0.343													34	65					0	0	0.000692331	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172237	21172237	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:21172237G>A	uc010sin.1	+	2	141	c.141G>A	c.(139-141)CCG>CCA	p.P47P	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	47						membrane	transporter activity				0						TACACAGACCGAAGTTAATTG	0.328													8	49					0	0	0.000157383	0	0
GYS2	2998	broad.mit.edu	37	12	21727174	21727174	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:21727174C>T	uc001rfb.2	-	4	837	c.582G>A	c.(580-582)AGG>AGA	p.R194R		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	194					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TAGGAAGTTTCCTGGCTCGAG	0.418													13	14					0	0	0.00136819	0	0
DNM1L	10059	broad.mit.edu	37	12	32871635	32871635	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:32871635C>T	uc001rld.2	+	7	839	c.678C>T	c.(676-678)GCC>GCT	p.A226A	DNM1L_uc010skf.1_RNA|DNM1L_uc010skg.1_Intron|DNM1L_uc001rle.2_Silent_p.A226A|DNM1L_uc001rlf.2_Silent_p.A226A|DNM1L_uc010skh.1_Silent_p.A292A|DNM1L_uc001rlg.2_Silent_p.A292A|DNM1L_uc001rlh.2_Silent_p.A279A|DNM1L_uc010ski.1_Intron	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	226	GTPase domain.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GTACTGATGCCATGGATGTAT	0.393													50	32					0	0	0.000781405	0	0
ALG10B	144245	broad.mit.edu	37	12	38714324	38714324	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:38714324T>A	uc001rln.3	+	3	870	c.731T>A	c.(730-732)TTT>TAT	p.F244Y	ALG10B_uc001rlo.3_Missense_Mutation_p.F214Y|ALG10B_uc010skk.1_Missense_Mutation_p.F184Y	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	244	Cytoplasmic (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				TCCATGTCCTTTAAAAACTTG	0.368													130	478					0	0	0.000781405	0	0
ABCD2	225	broad.mit.edu	37	12	39973353	39973353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:39973353G>A	uc001rmb.2	-	8	2287	c.1861C>T	c.(1861-1863)CGT>TGT	p.R621C		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	621	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						TAAAACATACGAGCCATGCCC	0.353													35	134					0	0	0.000437636	0	0
C12orf40	283461	broad.mit.edu	37	12	40076547	40076547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:40076547G>A	uc001rmc.2	+	8	988	c.821G>A	c.(820-822)GGA>GAA	p.G274E	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	274										ovary(6)	6						GGGAAAAATGGAAAGGAAGTT	0.343													57	75					0	0	0.000781405	0	0
CNTN1	1272	broad.mit.edu	37	12	41312506	41312506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:41312506G>A	uc001rmm.1	+	4	273	c.160G>A	c.(160-162)GAG>AAG	p.E54K	CNTN1_uc009zjy.1_Missense_Mutation_p.E54K|CNTN1_uc001rmn.1_Missense_Mutation_p.E43K|CNTN1_uc001rmo.2_Missense_Mutation_p.E54K	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	54	Ig-like C2-type 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CATTTATCCAGAGGAATCACT	0.413													25	54					0	0	0.00047179	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43847717	43847717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:43847717G>A	uc010skx.1	-	12	1753	c.1753C>T	c.(1753-1755)CGT>TGT	p.R585C		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	585	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TACTCAGGACGATTACAGCGC	0.418													9	7					0	0	0.000274275	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43945032	43945032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:43945032G>A	uc010skx.1	-	2	133	c.133C>T	c.(133-135)CCC>TCC	p.P45S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	45						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACCCGCTCGGGGATCACTACT	0.577													174	195					0	0	0.000781405	0	0
NELL2	4753	broad.mit.edu	37	12	45059387	45059387	+	Missense_Mutation	SNP	C	T	T	rs150491663		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:45059387C>T	uc001rog.2	-	13	1919	c.1324G>A	c.(1324-1326)GAT>AAT	p.D442N	NELL2_uc001rof.3_Missense_Mutation_p.D441N|NELL2_uc001roh.2_Missense_Mutation_p.D442N|NELL2_uc009zkd.2_Missense_Mutation_p.D441N|NELL2_uc010skz.1_Missense_Mutation_p.D492N|NELL2_uc010sla.1_Missense_Mutation_p.D465N|NELL2_uc001roi.1_Missense_Mutation_p.D442N|NELL2_uc010slb.1_Missense_Mutation_p.D441N|NELL2_uc001roj.2_Missense_Mutation_p.D442N	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	442	EGF-like 2; calcium-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		GCACACTCATCGATGTCTGTG	0.418													34	118					0	0	0.000814825	0	0
ARID2	196528	broad.mit.edu	37	12	46246056	46246056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:46246056C>T	uc001ros.1	+	15	4150	c.4150C>T	c.(4150-4152)CAT>TAT	p.H1384Y	ARID2_uc001ror.2_Missense_Mutation_p.H1384Y|ARID2_uc009zkg.1_Missense_Mutation_p.H840Y|ARID2_uc009zkh.1_Missense_Mutation_p.H1011Y|ARID2_uc001rou.1_Missense_Mutation_p.H718Y	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1384					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AACTTCCAATCATGTAGGAAA	0.348													7	19					0	0	8.12818e-05	0	0
SLC38A1	81539	broad.mit.edu	37	12	46601355	46601355	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:46601355C>T	uc001rpa.2	-	7	696	c.438G>A	c.(436-438)GGG>GGA	p.G146G	SLC38A1_uc001rpb.2_Silent_p.G146G|SLC38A1_uc001rpc.2_Silent_p.G146G|SLC38A1_uc001rpd.2_Silent_p.G146G|SLC38A1_uc001rpe.2_Silent_p.G146G|SLC38A1_uc010slh.1_Silent_p.G119G|SLC38A1_uc009zkj.1_Silent_p.G146G	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	146	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TTACGAACTTCCCTGTGGTGC	0.408													23	34					0	0	0.000878237	0	0
SLC38A4	55089	broad.mit.edu	37	12	47186741	47186741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:47186741C>T	uc001rpi.2	-	3	513	c.114G>A	c.(112-114)ATG>ATA	p.M38I	SLC38A4_uc001rpj.2_Missense_Mutation_p.M38I|SLC38A4_uc009zkl.2_Missense_Mutation_p.M38I	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	38	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CATACCTGCTCATTGCTGCCT	0.413													16	31					0	0	0.000422831	0	0
HDAC7	51564	broad.mit.edu	37	12	48191260	48191260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:48191260C>T	uc009zkv.1	-	4	582	c.367G>A	c.(367-369)GAA>AAA	p.E123K	HDAC7_uc010slo.1_Missense_Mutation_p.E162K|HDAC7_uc001rqj.3_Missense_Mutation_p.E162K|HDAC7_uc001rqk.3_Missense_Mutation_p.E145K			Q8WUI4	HDAC7_HUMAN	Synthetic construct DNA, clone: pF1KB0470, Homo sapiens HDAC7 gene for histone deacetylase 7, without stop codon, in Flexi system.	123	Interaction with MEF2A (By similarity).|Transcription repression 1 (By similarity).				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		GTGGCTCCTTCCGTCTCCAGG	0.642													262	291					0	0	0.000781405	0	0
H1FNT	341567	broad.mit.edu	37	12	48723366	48723366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:48723366G>A	uc001rrm.2	+	1	604	c.292G>A	c.(292-294)GAA>AAA	p.E98K		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	98					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						CGGCCGCCACGAAGCGCCCAG	0.662													114	151					0	0	0.000781405	0	0
LALBA	3906	broad.mit.edu	37	12	48962956	48962956	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:48962956C>T	uc001rrt.2	-	2	227	c.201G>A	c.(199-201)ACG>ACA	p.T67T		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	67					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						GTCCATATTCCGTGCTTTCAT	0.453													18	53					0	0	0.00074312	0	0
CCNT1	904	broad.mit.edu	37	12	49087349	49087349	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:49087349G>A	uc001rse.1	-	9	1971	c.1648C>T	c.(1648-1650)CAG>TAG	p.Q550*	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Nonsense_Mutation_p.Q265*	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	550	Ser-rich.				cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						TTGCTTGTCTGGCTACTATGT	0.448													241	279					0	0	0.000781405	0	0
MLL2	8085	broad.mit.edu	37	12	49421018	49421018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:49421018G>A	uc001rta.3	-	48	14731	c.14731C>T	c.(14731-14733)CCT>TCT	p.P4911S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4911	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding	p.G4911E(1)		kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGTTCTTCAGGAGGTGGGGCC	0.627			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			235	686					0	0	0.000781405	0	0
MLL2	8085	broad.mit.edu	37	12	49432566	49432566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:49432566G>A	uc001rta.3	-	34	8573	c.8573C>T	c.(8572-8574)TCC>TTC	p.S2858F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2858					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAGACGGGTGGAAATTCCCGC	0.582			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			20	92					0	0	0.00121646	0	0
PRPF40B	25766	broad.mit.edu	37	12	50025701	50025701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:50025701C>T	uc001rur.1	+	3	285	c.221C>T	c.(220-222)ACC>ATC	p.T74I	PRPF40B_uc001rup.1_Missense_Mutation_p.T96I|PRPF40B_uc001ruq.1_Missense_Mutation_p.T68I|PRPF40B_uc001rus.1_Missense_Mutation_p.T17I	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	74					mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						GTGCCTGTCACCGCAGCGGTA	0.547													283	378					0	0	0.000781405	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50189689	50189689	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:50189689G>C	uc009zlk.2	-	8	2156	c.1954C>G	c.(1954-1956)CGA>GGA	p.R652G	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_Missense_Mutation_p.R245G	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	648										central_nervous_system(1)	1						TCCCCAGGTCGCCGTCCTGAC	0.662													30	87					0	0	0.00127121	0	0
SCN8A	6334	broad.mit.edu	37	12	52156341	52156341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:52156341C>T	uc001ryw.2	+	15	2603	c.2425C>T	c.(2425-2427)CCC>TCC	p.P809S	SCN8A_uc010snl.1_Missense_Mutation_p.P674S|SCN8A_uc001ryy.2_Missense_Mutation_p.P674S	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	809	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AGCCATGGATCCCTACTATTA	0.413													173	204					0	0	0.000781405	0	0
SCN8A	6334	broad.mit.edu	37	12	52163031	52163031	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:52163031G>C	uc001ryw.2	+	17	3462	c.3284G>C	c.(3283-3285)CGG>CCG	p.R1095P	SCN8A_uc010snl.1_Missense_Mutation_p.R960P	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1095					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TTGACTGTACGGGTACCCATT	0.517													3	120					0	0	6.4e-05	0	0
KRT71	112802	broad.mit.edu	37	12	52943862	52943862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:52943862C>T	uc001sao.2	-	2	677	c.607G>A	c.(607-609)GAC>AAC	p.D203N		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	203	Coil 1B.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		AGCTCCGAGTCCAGCCTCACC	0.587													253	330					0	0	0.000781405	0	0
KRT4	3851	broad.mit.edu	37	12	53202120	53202120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:53202120C>T	uc001saz.2	-	6	1576	c.1305G>A	c.(1303-1305)ATG>ATA	p.M435I		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	361						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GCCTCTGGATCATCCTGTTGA	0.537													63	307					0	0	0.000781405	0	0
ESPL1	9700	broad.mit.edu	37	12	53664583	53664583	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:53664583G>A	uc001sck.2	+	5	1460	c.1369_splice	c.e5+1	p.A457_splice	ESPL1_uc001scj.2_Splice_Site_p.A132_splice	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase						apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GGGATGACCGGTTAGTGCCCT	0.562													124	379					0	0	0.000781405	0	0
NFE2	4778	broad.mit.edu	37	12	54686416	54686416	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:54686416C>T	uc009znk.2	-	2	1374	c.864G>A	c.(862-864)CTG>CTA	p.L288L	NFE2_uc001sfq.2_Silent_p.L288L|NFE2_uc001sfr.3_Silent_p.L288L|NFE2_uc009znl.2_Silent_p.L288L	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	288					blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						CAATGGTTTCCAGCTTCCTCT	0.642													121	82					0	0	0.000781405	0	0
ITGA5	3678	broad.mit.edu	37	12	54795606	54795606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:54795606G>A	uc001sga.2	-	22	2328	c.2260C>T	c.(2260-2262)CTC>TTC	p.L754F		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	754	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						GTGTCCCGGAGATGAGGGACT	0.557													110	127					0	0	0.000781405	0	0
ITGA5	3678	broad.mit.edu	37	12	54799016	54799016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:54799016C>T	uc001sga.2	-	12	1227	c.1159G>A	c.(1159-1161)GAT>AAT	p.D387N	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	387	Extracellular (Potential).|FG-GAP 6.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CCAAACTCATCATGGCCAGTG	0.627													230	222					0	0	0.000781405	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54901693	54901693	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:54901693C>T	uc001sgc.3	+	4	442	c.363C>T	c.(361-363)ATC>ATT	p.I121I	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Silent_p.I71I	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	121					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						ATTTTGATATCGTAAGAACCT	0.438													23	110					0	0	0.000586117	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420303	55420303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:55420303C>T	uc001sgp.3	+	2	458	c.80C>T	c.(79-81)TCC>TTC	p.S27F		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	27					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						GGTCTGGGCTCCCAAAATGAG	0.413													19	36					0	0	0.00121646	0	0
OR10A7	121364	broad.mit.edu	37	12	55615353	55615353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:55615353C>T	uc010spf.1	+	1	545	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TGTGATGGTCCCCCAGTGTTA	0.463													9	44					0	0	0.000274275	0	0
OR10P1	121130	broad.mit.edu	37	12	56031459	56031459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:56031459C>T	uc010spq.1	+	1	784	c.784C>T	c.(784-786)CGG>TGG	p.R262W		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CACCTACATCCGGCCGCAGGC	0.577													75	291					0	0	0.000781405	0	0
SUOX	6821	broad.mit.edu	37	12	56398469	56398470	+	Missense_Mutation	DNP	CC	TT	TT	rs61733163	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:56398469_56398470CC>TT	uc001six.2	+	6	1622_1623	c.1296_1297CC>TT	c.(1294-1299)CCCCGG>CCTTGG	p.R433W	SUOX_uc001siy.2_Missense_Mutation_p.R433W|SUOX_uc001siz.2_Missense_Mutation_p.R433W|SUOX_uc001sja.2_Missense_Mutation_p.R433W	NM_000456	NP_000447	P51687	SUOX_HUMAN	sulfite oxidase precursor	433	Molybdenum-pterin domain (By similarity).					mitochondrial intermembrane space	electron carrier activity|molybdenum ion binding|sulfite oxidase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.119)			TCACAGAGCCCCGGGATGGAGA	0.545													92	370					0	0	6.4e-05	0	0
CNPY2	10330	broad.mit.edu	37	12	56705059	56705059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:56705059G>A	uc001sku.1	-	4	885	c.344C>T	c.(343-345)TCC>TTC	p.S115F		NM_014255	NP_055070	Q9Y2B0	CNPY2_HUMAN	canopy 2 homolog precursor	115	Saposin B-type.					endoplasmic reticulum|integral to plasma membrane	protein binding				0						CAGTTCACTGGATTCTCCATT	0.512													177	599					0	0	0.000781405	0	0
APOF	319	broad.mit.edu	37	12	56755814	56755814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:56755814G>A	uc001sle.1	-	2	230	c.176C>T	c.(175-177)TCC>TTC	p.S59F		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	59					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						GGGGTCTGAGGAGGGTGTCTG	0.527													323	420					0	0	0.000781405	0	0
LRP1	4035	broad.mit.edu	37	12	57548035	57548035	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:57548035T>G	uc001snd.2	+	7	1352	c.886T>G	c.(886-888)TTT>GTT	p.F296V	LRP1_uc001snc.1_Missense_Mutation_p.F296V	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	296	Extracellular (Potential).|LDL-receptor class B 1.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CAACTTCTACTTTGTGGATGA	0.512													135	529					0	0	0.000781405	0	0
LRP1	4035	broad.mit.edu	37	12	57600328	57600328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:57600328C>T	uc001snd.2	+	76	12129	c.11663C>T	c.(11662-11664)TCG>TTG	p.S3888L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3888	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CACCCCCATTCGGCTTACGAG	0.587													199	190					0	0	0.000781405	0	0
SRGAP1	57522	broad.mit.edu	37	12	64521665	64521665	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:64521665C>T	uc010ssp.1	+	21	2621	c.2565C>T	c.(2563-2565)CCC>CCT	p.P855P	SRGAP1_uc001srv.2_Silent_p.P792P	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	855	Poly-Pro.				axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		GAGAGCCACCCCCTCCAGTAA	0.562													106	147					0	0	0.000781405	0	0
CPSF6	11052	broad.mit.edu	37	12	69651633	69651633	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:69651633G>T	uc001sut.3	+	5	752	c.642G>T	c.(640-642)GGG>GGT	p.G214G	CPSF6_uc001suu.3_Silent_p.G214G|CPSF6_uc010stk.1_5'Flank	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	214	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			TTCCTGGTGGGGACAGATTTC	0.537													193	189					1.56076e-113	1.10572e-112	0.000781405	1	0
PTPRB	5787	broad.mit.edu	37	12	70954554	70954554	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:70954554C>T	uc001swb.3	-	15	3705	c.3675G>A	c.(3673-3675)ACG>ACA	p.T1225T	PTPRB_uc010sto.1_Silent_p.T1135T|PTPRB_uc010stp.1_Silent_p.T1135T|PTPRB_uc001swc.3_Silent_p.T1443T|PTPRB_uc001swa.3_Silent_p.T1355T|PTPRB_uc001swd.3_Silent_p.T1442T|PTPRB_uc009zrr.1_Silent_p.T1322T	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1225	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ACCGCCACTCCGTCAGGTCCT	0.488													12	24					0	0	0.000978159	0	0
KCNC2	3747	broad.mit.edu	37	12	75444548	75444548	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:75444548G>T	uc001sxg.1	-	3	1781	c.1237C>A	c.(1237-1239)CCT>ACT	p.P413T	KCNC2_uc009zry.2_Missense_Mutation_p.P413T|KCNC2_uc001sxe.2_Missense_Mutation_p.P413T|KCNC2_uc001sxf.2_Missense_Mutation_p.P413T|KCNC2_uc010stw.1_Missense_Mutation_p.P413T	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	413					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CTAGCTGAAGGGTCGTTAGGT	0.458													9	7					7.48243e-07	5.2203e-06	0.000442599	1	0
BBS10	79738	broad.mit.edu	37	12	76740252	76740252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:76740252G>A	uc001syd.1	-	2	1597	c.1513C>T	c.(1513-1515)CCG>TCG	p.P505S		NM_024685	NP_078961	Q8TAM1	BBS10_HUMAN	Bardet-Biedl syndrome 10	505					cellular protein metabolic process|nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	cilium	ATP binding			ovary(1)|skin(1)	2						GTTGAATACGGAATATATGTT	0.343									Bardet-Biedl_syndrome				245	292					0	0	0.000781405	0	0
NAV3	89795	broad.mit.edu	37	12	78562597	78562597	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:78562597C>T	uc001syp.2	+	24	5105	c.4932C>T	c.(4930-4932)GCC>GCT	p.A1644A	NAV3_uc001syo.2_Silent_p.A1644A|NAV3_uc010sub.1_Silent_p.A1130A|NAV3_uc009zsf.2_Silent_p.A475A	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1644	Potential.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ATTCTGCTGCCCAGGCGGCTA	0.403										HNSCC(70;0.22)			8	15					0	0	0.000157383	0	0
PPFIA2	8499	broad.mit.edu	37	12	81733043	81733043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:81733043G>A	uc001szo.1	-	21	2625	c.2464C>T	c.(2464-2466)CAC>TAC	p.H822Y	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	748										ovary(3)|lung(2)|pancreas(1)	6						GGGGCTTTGTGAAGAGAGTCT	0.443													6	15					0	0	8.12818e-05	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85518290	85518290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:85518290G>A	uc001tac.2	+	17	4111	c.4000G>A	c.(4000-4002)GAA>AAA	p.E1334K	LRRIQ1_uc001tab.1_Missense_Mutation_p.E1334K	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1334										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TGAGCCTAGTGAAAAAATGTA	0.328													132	176					0	0	0.000781405	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373394	86373394	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:86373394C>T	uc001tai.3	-	8	2360	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	MGAT4C_uc001tal.3_Silent_p.G370G|MGAT4C_uc001taj.3_Silent_p.G370G|MGAT4C_uc001tak.3_Silent_p.G370G|MGAT4C_uc010sum.1_Silent_p.G394G|MGAT4C_uc001tah.3_Silent_p.G370G	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	370	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						AAGGTGGTTTCCCCCAAAAGT	0.353													11	28					0	0	0.000673444	0	0
USP44	84101	broad.mit.edu	37	12	95914826	95914826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:95914826C>T	uc001teg.2	-	5	2030	c.1886G>A	c.(1885-1887)GGG>GAG	p.G629E	USP44_uc001teh.2_Missense_Mutation_p.G629E|USP44_uc009zte.2_Missense_Mutation_p.G626E	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	629					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						AAATCCTTTCCCATGGTGCAT	0.458													74	213					0	0	0.000781405	0	0
HAL	3034	broad.mit.edu	37	12	96368029	96368029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:96368029G>A	uc001tem.1	-	21	2252	c.1955C>T	c.(1954-1956)CCG>CTG	p.P652L	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Missense_Mutation_p.P444L|HAL_uc010sux.1_3'UTR	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	652					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	CTCAGACTCCGGGATTTTGGT	0.428													196	605					0	0	0.000781405	0	0
CDK17	5128	broad.mit.edu	37	12	96683000	96683000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:96683000G>A	uc001tep.1	-	11	1552	c.1063C>T	c.(1063-1065)CGG>TGG	p.R355W	CDK17_uc009ztk.2_Missense_Mutation_p.R355W|CDK17_uc010svb.1_Missense_Mutation_p.R302W	NM_002595	NP_002586	Q00537	CDK17_HUMAN	PCTAIRE protein kinase 2	355	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity			ovary(3)|lung(2)|kidney(1)|central_nervous_system(1)	7						TCAGGTGGCCGGTACCATAGT	0.398													9	57					0	0	0.000274275	0	0
SLC5A8	160728	broad.mit.edu	37	12	101573822	101573822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:101573822C>T	uc001thz.3	-	10	1608	c.1218G>A	c.(1216-1218)ATG>ATA	p.M406I		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	406	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						ACAAAGCTCCCATAAGTGACG	0.453													21	110					0	0	0.000586117	0	0
STAB2	55576	broad.mit.edu	37	12	104033936	104033936	+	Silent	SNP	C	T	T	rs144975292		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:104033936C>T	uc001tjw.2	+	9	1128	c.942C>T	c.(940-942)TTC>TTT	p.F314F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	314	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity	p.F314F(1)		ovary(9)|skin(5)	14						ACCAGAATTTCGTACCTGGAG	0.448													221	256					0	0	0.000781405	0	0
STAB2	55576	broad.mit.edu	37	12	104149490	104149490	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:104149490C>T	uc001tjw.2	+	63	7167	c.6981C>T	c.(6979-6981)TTC>TTT	p.F2327F	STAB2_uc009zug.2_Intron	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2327	Extracellular (Potential).|FAS1 7.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCACAAACTTCCTGACGGTAT	0.547													86	79					0	0	0.000781405	0	0
BTBD11	121551	broad.mit.edu	37	12	108045516	108045516	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:108045516G>A	uc001tmk.1	+	16	3578	c.3057G>A	c.(3055-3057)GCG>GCA	p.A1019A	BTBD11_uc001tml.1_Silent_p.A556A|BTBD11_uc001tmm.1_Silent_p.A98A	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	1019						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TTATCTGTGCGAAAAGCATCA	0.483													62	54					0	0	0.000781405	0	0
ACACB	32	broad.mit.edu	37	12	109644522	109644522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:109644522C>T	uc001tob.2	+	20	3040	c.2921C>T	c.(2920-2922)CCG>CTG	p.P974L	ACACB_uc001toc.2_Missense_Mutation_p.P974L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	974					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CAGGCTGAACCGTTCACAGGA	0.567													149	690					0	0	0.000781405	0	0
MYO1H	283446	broad.mit.edu	37	12	109881337	109881337	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:109881337A>T	uc010sxo.1	+	5	507	c.232A>T	c.(232-234)AAA>TAA	p.K78*	MYO1H_uc010sxn.1_Nonsense_Mutation_p.K887*			Q8N1T3	MYO1H_HUMAN	SubName: Full=cDNA FLJ54829, moderately similar to Myosin Ic; SubName: Full=Myosin IH, isoform CRA_a;	78						myosin complex	motor activity				0						CCCGGTCATTAAATATGACAG	0.478													34	103					0	0	0.00111076	0	0
ANAPC7	51434	broad.mit.edu	37	12	110812066	110812066	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:110812066G>A	uc001tqo.2	-	11	1684	c.1683C>T	c.(1681-1683)GCC>GCT	p.A561A		NM_016238	NP_057322	Q9UJX3	APC7_HUMAN	anaphase-promoting complex subunit 7 isoform a	561					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding				0						CCTCCTGAGTGGCATCCGTGG	0.587													178	216					0	0	0.000781405	0	0
HVCN1	84329	broad.mit.edu	37	12	111089095	111089095	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:111089095G>A	uc001trs.1	-	6	735	c.570C>T	c.(568-570)TTC>TTT	p.F190F	HVCN1_uc001trq.1_Silent_p.F190F|HVCN1_uc001trt.1_Silent_p.F190F|HVCN1_uc010syd.1_Silent_p.F170F	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	190	Helical; Name=Segment S3; (By similarity).				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						GGTGCTCCTGGAACAGGAGGA	0.557													39	85					0	0	0.000953801	0	0
CUX2	23316	broad.mit.edu	37	12	111785931	111785931	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:111785931C>T	uc001tsa.1	+	22	4416	c.4263C>T	c.(4261-4263)TCC>TCT	p.S1421S		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1421	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CTCCCATCTCCCCATCCCCAC	0.657													57	203					0	0	0.000781405	0	0
TMEM116	89894	broad.mit.edu	37	12	112371783	112371783	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:112371783C>A	uc001ttc.1	-	11	1020	c.364G>T	c.(364-366)GGC>TGC	p.G122C	TMEM116_uc001ttd.1_Missense_Mutation_p.G214C|TMEM116_uc001tte.1_Missense_Mutation_p.G179C|TMEM116_uc001ttf.1_Missense_Mutation_p.G122C|TMEM116_uc001ttg.1_RNA|TMEM116_uc001tth.1_Missense_Mutation_p.G28C	NM_138341	NP_612350	Q8NCL8	TM116_HUMAN	transmembrane protein 116	122						integral to membrane				ovary(1)	1						CCCAGAAAGCCAGTTGACTTC	0.473													40	48					6.29468e-14	4.40939e-13	0.000953801	1	0
RPH3A	22895	broad.mit.edu	37	12	113333679	113333679	+	Splice_Site	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113333679G>C	uc010syl.1	+	21	2316	c.1954_splice	c.e21+1	p.G652_splice	RPH3A_uc001ttz.2_Splice_Site_p.G652_splice|RPH3A_uc001tty.2_Splice_Site_p.G648_splice|RPH3A_uc010sym.1_Splice_Site_p.G603_splice|RPH3A_uc001tua.2_Splice_Site_p.G412_splice	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1						intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		GATTACATCGGTGAGTGTTCC	0.468													10	23					0	0	0.000673444	0	0
OAS3	4940	broad.mit.edu	37	12	113386888	113386888	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113386888C>A	uc001tug.2	+	6	1339	c.1252C>A	c.(1252-1254)CGC>AGC	p.R418S		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	418	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GGAGCTGGACCGCTTCATCCA	0.607													5	184					0.000602214	0.00414587	0.000602214	1	0
OAS3	4940	broad.mit.edu	37	12	113403602	113403602	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113403602C>T	uc001tug.2	+	12	2544	c.2457C>T	c.(2455-2457)CTC>CTT	p.L819L		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	819	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						ATGCCGACCTCGTGGTGTTCC	0.607													16	36					0	0	0.000958276	0	0
DTX1	1840	broad.mit.edu	37	12	113496244	113496244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113496244C>T	uc001tuk.1	+	1	583	c.247C>T	c.(247-249)CGC>TGC	p.R83C		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	83	WWE 1.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						GCACCAGTTTCGCCAGGACAC	0.612													375	361					0	0	0.000781405	0	0
DTX1	1840	broad.mit.edu	37	12	113532612	113532612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113532612G>A	uc001tuk.1	+	6	1582	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	416	RING-type.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						CATCTGCATGGAGCGACTGGT	0.667													84	280					0	0	0.000781405	0	0
RASAL1	8437	broad.mit.edu	37	12	113537799	113537799	+	Missense_Mutation	SNP	G	A	A	rs149283617		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113537799G>A	uc001tum.1	-	22	2643	c.2350C>T	c.(2350-2352)CGT>TGT	p.R784C	RASAL1_uc010syp.1_Missense_Mutation_p.R785C|RASAL1_uc001tul.2_Missense_Mutation_p.R756C|RASAL1_uc001tun.1_Missense_Mutation_p.R786C	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	784					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity	p.R784C(1)		ovary(2)|skin(2)	4						TCGTGGGCACGATCCAGGTCT	0.667													106	355					0	0	0.000781405	0	0
SLC24A6	80024	broad.mit.edu	37	12	113759134	113759134	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:113759134A>G	uc001tvc.2	-	3	386	c.176T>C	c.(175-177)CTG>CCG	p.L59P	SLC24A6_uc001tvd.1_Missense_Mutation_p.L59P|SLC24A6_uc001tuz.2_5'Flank|SLC24A6_uc001tva.2_5'Flank|SLC24A6_uc001tvb.2_5'Flank	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	59	Extracellular (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						AGAGACATTCAGGCCACACAC	0.567													5	738					0	0	0.000602214	0	0
NOS1	4842	broad.mit.edu	37	12	117669901	117669901	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:117669901G>T	uc001twm.1	-	22	3957	c.3271C>A	c.(3271-3273)CCG>ACG	p.P1091T		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1091	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GTGCAGGGCGGGAGGCGGAGC	0.602													33	55					9.45814e-24	6.64926e-23	0.000953801	1	0
NOS1	4842	broad.mit.edu	37	12	117685236	117685236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:117685236C>T	uc001twm.1	-	18	3426	c.2740G>A	c.(2740-2742)GAG>AAG	p.E914K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	914	FMN (By similarity).|Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	AGGATCCTCTCCCCTCCCAGT	0.557													28	93					0	0	0.000878237	0	0
NOS1	4842	broad.mit.edu	37	12	117696935	117696935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:117696935C>T	uc001twm.1	-	15	3054	c.2368G>A	c.(2368-2370)GTG>ATG	p.V790M	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	790	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATGGACATCACCTAGGTGGGC	0.318													41	44					0	0	0.000374591	0	0
KSR2	283455	broad.mit.edu	37	12	117977675	117977675	+	Silent	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:117977675A>T	uc001two.2	-	10	1504	c.1449T>A	c.(1447-1449)CCT>CCA	p.P483P		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	512	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGGCTGGTAAGGGACAGGGA	0.637													32	140					0	0	0.000319135	0	0
SRRM4	84530	broad.mit.edu	37	12	119568606	119568606	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:119568606C>T	uc001txa.1	+	8	1030	c.738C>T	c.(736-738)CTC>CTT	p.L246L		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	246	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						GTCAACCCCTCCAGATGCTTG	0.622													31	28					0	0	0.000692331	0	0
CIT	11113	broad.mit.edu	37	12	120288030	120288030	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:120288030G>T	uc001txi.1	-	5	517	c.464C>A	c.(463-465)CCG>CAG	p.P155Q	CIT_uc001txj.1_Missense_Mutation_p.P155Q	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	155	Protein kinase.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GGGGATCCACGGGCTTGTGCT	0.408													8	453					0.000673444	0.0046179	0.000673444	1	0
GCN1L1	10985	broad.mit.edu	37	12	120578756	120578756	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:120578756G>A	uc001txo.2	-	45	5914	c.5901C>T	c.(5899-5901)ATC>ATT	p.I1967I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1967	HEAT 16.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTTCCTCAAGGATGGGGATGA	0.527													171	562					0	0	0.000781405	0	0
SPPL3	121665	broad.mit.edu	37	12	121205252	121205252	+	Silent	SNP	G	A	A	rs148802591	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:121205252G>A	uc001tzd.2	-	9	1399	c.918C>T	c.(916-918)TCC>TCT	p.S306S	SPPL3_uc009zwz.2_Silent_p.S299S|SPPL3_uc001tzc.2_Silent_p.S136S	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	307						integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCATGCGCCCGGAGATGTTGG	0.532													70	66					0	0	0.000781405	0	0
OASL	8638	broad.mit.edu	37	12	121471316	121471317	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:121471316_121471317CC>TT	uc001tzj.1	-	2	434_435	c.428_429GG>AA	c.(427-429)AGG>AAA	p.R143K	OASL_uc001tzk.1_Missense_Mutation_p.R143K	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	143					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCGCAGTCCCCCTGGTCTGGAT	0.624													202	686					0	0	6.4e-05	0	0
KDM2B	84678	broad.mit.edu	37	12	121880394	121880394	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:121880394C>T	uc001uat.2	-	19	2954	c.2850G>A	c.(2848-2850)CTG>CTA	p.L950L	KDM2B_uc001uaq.2_Silent_p.L390L|KDM2B_uc010szy.1_Silent_p.L390L|KDM2B_uc001uar.2_Silent_p.L541L|KDM2B_uc001uas.2_Silent_p.L881L|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Silent_p.L198L|KDM2B_uc010szx.1_Silent_p.L198L|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	950	Potential.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						gctccttgctcagctccctgc	0.547													45	124					0	0	0.000437636	0	0
LRRC43	254050	broad.mit.edu	37	12	122669159	122669159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:122669159G>A	uc009zxm.2	+	2	269	c.244G>A	c.(244-246)GAG>AAG	p.E82K	LRRC43_uc001ubw.3_5'UTR|LRRC43_uc009zxl.1_RNA	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	82											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GGAGACGGTGGAGGCCCTGCT	0.592													69	208					0	0	0.000781405	0	0
SBNO1	55206	broad.mit.edu	37	12	123805410	123805410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:123805410G>A	uc010tap.1	-	17	2327	c.2327C>T	c.(2326-2328)CCC>CTC	p.P776L	SBNO1_uc010tao.1_Missense_Mutation_p.P775L|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.P776L|SBNO1_uc001ueu.2_Missense_Mutation_p.P775L|SBNO1_uc001uev.2_Missense_Mutation_p.P774L|SBNO1_uc009zxy.1_Missense_Mutation_p.P741L	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	776							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		AATTAACCAGGGATCTGAGTG	0.284													12	48					0	0	0.000566183	0	0
TCTN2	79867	broad.mit.edu	37	12	124191370	124191370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:124191370C>T	uc001ufp.2	+	16	1995	c.1867C>T	c.(1867-1869)CCT>TCT	p.P623S	TCTN2_uc009zya.2_Missense_Mutation_p.P622S	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	623	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TATTAAAATTCCTGCACAGTT	0.453													141	169					0	0	0.000781405	0	0
DNAH10	196385	broad.mit.edu	37	12	124341782	124341782	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:124341782C>T	uc001uft.3	+	36	6289	c.6264C>T	c.(6262-6264)GTC>GTT	p.V2088V		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2088	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GCTACGCGGTCCTACCCATCC	0.507													136	139					0	0	0.000781405	0	0
UBC	7316	broad.mit.edu	37	12	125397652	125397652	+	Silent	SNP	T	C	C	rs146795524		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:125397652T>C	uc001ugs.3	-	2	1114	c.666A>G	c.(664-666)GTA>GTG	p.V222V	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Silent_p.V222V|UBC_uc001ugt.2_Silent_p.V222V|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Silent_p.V70V	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	222	Ubiquitin-like 3.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		TGAGACGGAGTACCAGGTGCA	0.512													8	875					0	0	0.000151284	0	0
TMEM132B	114795	broad.mit.edu	37	12	126135361	126135361	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:126135361C>T	uc001uhe.1	+	7	1769	c.1761C>T	c.(1759-1761)ACC>ACT	p.T587T	TMEM132B_uc001uhf.1_Silent_p.T99T	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	587	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGCAGCTGACCTACATGCTGG	0.582													26	38					0	0	0.000720815	0	0
RIMBP2	23504	broad.mit.edu	37	12	130897293	130897293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:130897293C>T	uc001uil.2	-	15	2856	c.2692G>A	c.(2692-2694)GAA>AAA	p.E898K		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	898	SH3 2.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GCACAGGTTTCCCCACGGTAG	0.438													121	136					0	0	0.000781405	0	0
RIMBP2	23504	broad.mit.edu	37	12	130935832	130935833	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:130935832_130935833GG>AA	uc001uil.2	-	5	524_525	c.360_361CC>TT	c.(358-363)CCCCTT>CCTTTT	p.L121F	RIMBP2_uc001uim.2_Missense_Mutation_p.L29F	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	121						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GGCTGCGGAAGGGGCCGGATAT	0.55													142	186					0	0	6.4e-05	0	0
PUS1	80324	broad.mit.edu	37	12	132425867	132425867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:132425867C>T	uc001ujf.2	+	5	1054	c.575C>T	c.(574-576)TCC>TTC	p.S192F	PUS1_uc001ujg.2_Missense_Mutation_p.S164F|PUS1_uc001ujh.2_Missense_Mutation_p.S164F|PUS1_uc001uji.2_Missense_Mutation_p.S139F	NM_025215	NP_079491	Q9Y606	TRUA_HUMAN	pseudouridine synthase 1 isoform 1	192						mitochondrion	pseudouridine synthase activity|pseudouridylate synthase activity|RNA binding			breast(1)|central_nervous_system(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.05e-08)|Epithelial(86;2.51e-07)|all cancers(50;2.94e-07)		GGGTTTAACTCCAAGAACAGA	0.597													141	208					0	0	0.000781405	0	0
DDX51	317781	broad.mit.edu	37	12	132624299	132624299	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:132624299G>A	uc001ujy.3	-	14	1894	c.1855C>T	c.(1855-1857)CGA>TGA	p.R619*		NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	619	Helicase C-terminal.				rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		GTTAGCATTCGGAGGAATCTC	0.607													241	270					0	0	0.000781405	0	0
NOC4L	79050	broad.mit.edu	37	12	132629495	132629495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:132629495C>T	uc001ujz.1	+	2	255	c.214C>T	c.(214-216)CCC>TCC	p.P72S	DDX51_uc001ujy.3_5'Flank	NM_024078	NP_076983	Q9BVI4	NOC4L_HUMAN	nucleolar complex associated 4 homolog	72					rRNA processing	integral to membrane|nuclear membrane|nucleolus	protein binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.2e-08)|Epithelial(86;3.34e-07)|all cancers(50;1.97e-05)		GGGCCAGCTGCCCTCTGAGGA	0.637													33	91					0	0	0.00058488	0	0
LOC100101938	100101938	broad.mit.edu	37	13	19868694	19868694	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:19868694C>T	uc010tck.1	-	13		c.1934G>A				NR_027248				Homo sapiens cDNA clone IMAGE:5265638.												0						ATTCCTTTTCCTTCGAGCCAG	0.318													10	13					0	0	0.000673444	0	0
SPATA13	221178	broad.mit.edu	37	13	24876758	24876758	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:24876758C>T	uc001upg.1	+	12	2213	c.1806C>T	c.(1804-1806)GCC>GCT	p.A602A	SPATA13_uc001upd.1_Silent_p.A1227A|C1QTNF9_uc001upe.2_Intron|SPATA13_uc010tcy.1_Missense_Mutation_p.P550S|SPATA13_uc010tcz.1_Silent_p.A486A|SPATA13_uc010tda.1_Silent_p.A546A|SPATA13_uc001uph.2_Silent_p.A524A|SPATA13_uc010tdb.1_Silent_p.A462A|SPATA13_uc009zzz.1_Missense_Mutation_p.P160S	NM_153023	NP_694568	Q96N96	SPT13_HUMAN	spermatogenesis associated 13	602	C-terminal tail.				cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		GCCCTGTGGCCCCACCGCACC	0.587													251	455					0	0	0.000781405	0	0
RNF17	56163	broad.mit.edu	37	13	25338466	25338466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:25338466C>T	uc001upr.2	+	1	166	c.125C>T	c.(124-126)TCA>TTA	p.S42L	RNF17_uc010tdd.1_5'UTR|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.S42L|RNF17_uc001ups.2_Intron|RNF17_uc001upq.1_Missense_Mutation_p.S42L	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	42	RING-type.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GTATCCAGATCATCCGGTGAG	0.657													42	62					0	0	0.00148497	0	0
RNF17	56163	broad.mit.edu	37	13	25418068	25418068	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:25418068G>A	uc001upr.2	+	20	2831	c.2790G>A	c.(2788-2790)AAG>AAA	p.K930K	RNF17_uc010tdd.1_Silent_p.K789K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.K930K|RNF17_uc001ups.2_Silent_p.K869K|RNF17_uc010aac.2_Silent_p.K128K|RNF17_uc010aad.2_5'UTR	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	930					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CTCCTGAGAAGATTTATGTTC	0.269													12	37					0	0	0.00136819	0	0
C13orf26	122046	broad.mit.edu	37	13	31506856	31506856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:31506856G>A	uc001uti.2	+	1	23	c.4G>A	c.(4-6)GAA>AAA	p.E2K	uc001utg.1_5'Flank	NM_152325	NP_689538	Q8N6G2	CM026_HUMAN	hypothetical protein LOC122046	2										ovary(2)|skin(1)	3		Lung SC(185;0.0281)		all cancers(112;0.0176)|Epithelial(112;0.0768)|OV - Ovarian serous cystadenocarcinoma(117;0.0852)		GGGCAGAATGGAACAGCCTGG	0.687													70	139					0	0	0.000781405	0	0
KL	9365	broad.mit.edu	37	13	33635166	33635166	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:33635166C>T	uc001uus.2	+	4	1958	c.1950C>T	c.(1948-1950)CTC>CTT	p.L650L	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	650	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TGCCGCGCCTCCTGGCCAGGC	0.622													87	203					0	0	0.000781405	0	0
NBEA	26960	broad.mit.edu	37	13	35630155	35630155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:35630155G>A	uc001uvb.2	+	8	1187	c.981G>A	c.(979-981)ATG>ATA	p.M327I		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	327						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		aGTGGTACATGATCAGCATTG	0.313													4	23					0	0	0.00024832	0	0
NBEA	26960	broad.mit.edu	37	13	35770018	35770018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:35770018C>T	uc001uvb.2	+	31	5151	c.4945C>T	c.(4945-4947)CCA>TCA	p.P1649S	NBEA_uc010abi.2_Missense_Mutation_p.P305S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1649						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TGCTGCATTTCCAGACACCAT	0.328													8	15					0	0	0.000673444	0	0
NBEA	26960	broad.mit.edu	37	13	36239231	36239231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:36239231C>T	uc001uvb.2	+	55	8515	c.8309C>T	c.(8308-8310)CCG>CTG	p.P2770L	NBEA_uc010abi.2_Missense_Mutation_p.P1428L|NBEA_uc010tef.1_Missense_Mutation_p.P563L|NBEA_uc001uvd.2_Missense_Mutation_p.P348L	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2770						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GGTGACTATCCGGCACCAAGA	0.488													18	25					0	0	0.000566183	0	0
NBEA	26960	broad.mit.edu	37	13	36241521	36241522	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:36241521_36241522CC>TT	uc001uvb.2	+	56	8618_8619	c.8412_8413CC>TT	c.(8410-8415)TGCCTT>TGTTTT	p.L2805F	NBEA_uc010abi.2_Missense_Mutation_p.L1463F|NBEA_uc010tef.1_Missense_Mutation_p.L598F|NBEA_uc001uvd.2_Missense_Mutation_p.L383F	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2805	WD 3.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		AGGGCCCTTGCCTTGTCCACAC	0.53													104	192					0	0	6.4e-05	0	0
SOHLH2	54937	broad.mit.edu	37	13	36764133	36764133	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:36764133C>T	uc001uvj.2	-	6	680	c.591G>A	c.(589-591)GAG>GAA	p.E197E	SOHLH2_uc010tei.1_Silent_p.E274E	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	197	Basic motif.				cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		TTTTGTTTTTCTCGAACTCTG	0.333													25	47					0	0	0.001512	0	0
TRPC4	7223	broad.mit.edu	37	13	38211150	38211150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:38211150G>A	uc001uws.2	-	11	3059	c.2824C>T	c.(2824-2826)CCT>TCT	p.P942S	TRPC4_uc010abv.2_Missense_Mutation_p.P522S|TRPC4_uc001uwt.2_Missense_Mutation_p.P858S|TRPC4_uc010tey.1_Missense_Mutation_p.P801S|TRPC4_uc010abw.2_Missense_Mutation_p.P769S|TRPC4_uc010abx.2_Missense_Mutation_p.P947S|TRPC4_uc010aby.2_Missense_Mutation_p.P793S	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	942	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GGTATTATAGGAACCGTGTCC	0.458													22	62					0	0	0.000375601	0	0
FREM2	341640	broad.mit.edu	37	13	39452977	39452977	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:39452977C>T	uc001uwv.2	+	23	9178	c.8869C>T	c.(8869-8871)CAG>TAG	p.Q2957*		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2957	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGACAAAGCTCAGCCAGAGAC	0.443													18	31					0	0	0.00121646	0	0
FOXO1	2308	broad.mit.edu	37	13	41134072	41134072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:41134072G>A	uc001uxl.3	-	2	1941	c.1556C>T	c.(1555-1557)CCC>CTC	p.P519L	FOXO1_uc010acc.1_Missense_Mutation_p.P334L	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	519					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		ATGGGAGCTGGGATTCATCAT	0.572													150	185					0	0	0.000781405	0	0
DGKH	160851	broad.mit.edu	37	13	42769039	42769039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:42769039C>T	uc001uyl.1	+	17	2075	c.2054C>T	c.(2053-2055)TCT>TTT	p.S685F	DGKH_uc010tfh.1_Missense_Mutation_p.S685F|DGKH_uc001uym.1_Missense_Mutation_p.S685F|DGKH_uc010tfi.1_Missense_Mutation_p.S440F|DGKH_uc010tfj.1_Missense_Mutation_p.S540F|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.S540F|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	685					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		GCACCTCGGTCTCCAGATGCC	0.418													34	60					0	0	0.00128727	0	0
DGKH	160851	broad.mit.edu	37	13	42769041	42769041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:42769041C>T	uc001uyl.1	+	17	2077	c.2056C>T	c.(2056-2058)CCA>TCA	p.P686S	DGKH_uc010tfh.1_Missense_Mutation_p.P686S|DGKH_uc001uym.1_Missense_Mutation_p.P686S|DGKH_uc010tfi.1_Missense_Mutation_p.P441S|DGKH_uc010tfj.1_Missense_Mutation_p.P541S|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.P541S|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	686					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		ACCTCGGTCTCCAGATGCCCG	0.418													34	60					0	0	0.00128727	0	0
GTF2F2	2963	broad.mit.edu	37	13	45841479	45841479	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:45841479A>C	uc001uzw.2	+	7	758	c.598A>C	c.(598-600)AAG>CAG	p.K200Q	GTF2F2_uc001uzv.2_Missense_Mutation_p.K200Q	NM_004128	NP_004119	P13984	T2FB_HUMAN	general transcription factor IIF, polypeptide 2,	200					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	microtubule cytoskeleton|transcription factor TFIIF complex	ATP binding|ATP-dependent helicase activity|DNA binding|protein binding				0		Lung NSC(96;0.00115)|Prostate(109;0.00578)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000647)		CTATAATCTTAAGGACTTGGT	0.373													59	114					0	0	0.000781405	0	0
SPERT	220082	broad.mit.edu	37	13	46276945	46276945	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:46276945C>T	uc001van.1	+	2	191	c.111C>T	c.(109-111)ACC>ACT	p.T37T	SPERT_uc001vao.2_5'Flank	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	37						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		AAAGAGATACCAGATCTGAAA	0.443													75	115					0	0	0.000781405	0	0
LCP1	3936	broad.mit.edu	37	13	46708262	46708262	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:46708262C>T	uc001vaz.3	-	14	1752	c.1626G>A	c.(1624-1626)AAG>AAA	p.K542K	LCP1_uc010ack.2_Silent_p.K111K|LCP1_uc001vay.3_Silent_p.K139K|LCP1_uc001vba.3_Silent_p.K542K	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	542	Actin-binding 2.|CH 4.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		AGAATTTTACCTTGAAACTAG	0.393			T	BCL6	NHL 								28	20					0	0	0.000279167	0	0
ARL11	115761	broad.mit.edu	37	13	50204832	50204832	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:50204832C>T	uc001vdf.1	+	2	395	c.249C>T	c.(247-249)ATC>ATT	p.I83I		NM_138450	NP_612459	Q969Q4	ARL11_HUMAN	ADP-ribosylation factor-like 11	83					small GTPase mediated signal transduction	intracellular	GTP binding|protein binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.119)|Kidney(9;0.169)	GBM - Glioblastoma multiforme(99;1.67e-09)		GCACAGATATCCTCGTGTACG	0.612													135	246					0	0	0.000781405	0	0
KPNA3	3839	broad.mit.edu	37	13	50296188	50296188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:50296188G>A	uc001vdj.2	-	9	1044	c.629C>T	c.(628-630)CCC>CTC	p.P210L		NM_002267	NP_002258	O00505	IMA3_HUMAN	karyopherin alpha 3	210	NLS binding site (major) (By similarity).|ARM 4.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|protein complex assembly	cytoplasm|nuclear pore	nuclear localization sequence binding|protein transporter activity				0		Lung NSC(96;2.46e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.42e-09)		GGGGATGGAGGGACTGATGAA	0.448													134	186					0	0	0.000781405	0	0
FAM10A4	145165	broad.mit.edu	37	13	50746252	50746252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:50746252C>T	uc001vej.2	+	1	99	c.28C>T	c.(28-30)CGG>TGG	p.R10W	DLEU1_uc010adl.1_Intron|DLEU1_uc001vee.1_Intron|DLEU1_uc010adm.1_Intron|DLEU1_uc010adn.1_Intron|DLEU1_uc001vef.1_Intron|DLEU1_uc001veg.1_Intron|DLEU1_uc010tgn.1_Intron|DLEU1_uc001vei.1_Intron|DLEU1_uc010ado.1_Intron|DLEU1_uc010adp.1_Intron	NR_002183				SubName: Full=ST13 protein;												0						GAACGAGCTTCGGGCCTTTGT	0.617													89	169					0	0	0.000781405	0	0
ATP7B	540	broad.mit.edu	37	13	52548574	52548574	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:52548574A>G	uc001vfw.2	-	2	939	c.782T>C	c.(781-783)CTG>CCG	p.L261P	ATP7B_uc010adv.2_Missense_Mutation_p.L261P|ATP7B_uc001vfx.2_Missense_Mutation_p.L261P|ATP7B_uc001vfy.2_Missense_Mutation_p.L261P|ATP7B_uc010tgt.1_Missense_Mutation_p.L261P|ATP7B_uc010tgu.1_Missense_Mutation_p.L261P|ATP7B_uc010tgv.1_Missense_Mutation_p.L261P|ATP7B_uc010tgw.1_Missense_Mutation_p.L229P	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	261	HMA 3.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		ATCTATTCTCAGTTGGAGGGT	0.423									Wilson_disease				86	109					0	0	0.000781405	0	0
PCDH20	64881	broad.mit.edu	37	13	61986316	61986316	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:61986316A>G	uc001vid.3	-	2	2280	c.1916T>C	c.(1915-1917)TTT>TCT	p.F639S	PCDH20_uc010thj.1_Missense_Mutation_p.F639S	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	612	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		CTTGTTGATAAACCGAGGACT	0.458													250	399					0	0	0.000781405	0	0
DACH1	1602	broad.mit.edu	37	13	72131210	72131210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:72131210C>T	uc010thn.1	-	7	1939	c.1516G>A	c.(1516-1518)GAT>AAT	p.D506N	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	558					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		CCGGCCAAATCTCCCTCTTTG	0.413													17	29					0	0	0.000422831	0	0
LMO7	4008	broad.mit.edu	37	13	76381890	76381890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:76381890G>A	uc001vjv.2	+	7	1532	c.772G>A	c.(772-774)GAT>AAT	p.D258N	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.D164N	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	543						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CTCTGAGCAAGATGATTCTGT	0.388													20	43					0	0	0.000586117	0	0
LMO7	4008	broad.mit.edu	37	13	76381957	76381957	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:76381957A>C	uc001vjv.2	+	7	1599	c.839A>C	c.(838-840)GAA>GCA	p.E280A	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.E186A	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	565						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CCGGATTTGGAAAAAGATGAT	0.443													35	46					0	0	0.000692331	0	0
LMO7	4008	broad.mit.edu	37	13	76423325	76423325	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:76423325G>T	uc001vjv.2	+	24	4322	c.3562G>T	c.(3562-3564)GAA>TAA	p.E1188*	LMO7_uc010thv.1_Nonsense_Mutation_p.E1139*|LMO7_uc010thw.1_Nonsense_Mutation_p.E1065*	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1473						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AATCCTTCAGGAAATGAGGAA	0.463													18	52					6.94344e-10	4.85512e-09	0.00074312	1	0
MYCBP2	23077	broad.mit.edu	37	13	77725060	77725060	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:77725060A>T	uc001vkf.2	-	48	6917	c.6826T>A	c.(6826-6828)TCT>ACT	p.S2276T	MYCBP2_uc010aev.2_Missense_Mutation_p.S1680T	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2276					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTTTTCTGAGAAACAGGGACA	0.353													29	96					0	0	0.000279167	0	0
SCEL	8796	broad.mit.edu	37	13	78133981	78133981	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:78133981C>T	uc001vki.2	+	4	374	c.204C>T	c.(202-204)TCC>TCT	p.S68S	SCEL_uc001vkj.2_Silent_p.S68S|SCEL_uc010thx.1_Silent_p.S68S	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	68					embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		GACATAATTCCCATGATGCAT	0.398													39	110					0	0	0.000374591	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454708	84454708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:84454708G>A	uc001vlk.2	-	1	1821	c.935C>T	c.(934-936)CCA>CTA	p.P312L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	312	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CCAGTTGCCTGGGATCTTTGT	0.552													103	183					0	0	0.000781405	0	0
SLITRK5	26050	broad.mit.edu	37	13	88328412	88328412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:88328412G>A	uc001vln.2	+	2	988	c.769G>A	c.(769-771)GCC>ACC	p.A257T	SLITRK5_uc010tic.1_Intron	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	257	LRRCT 1.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CTCCTATTCAGCCCTGGTGGG	0.493													353	551					0	0	0.000781405	0	0
UGGT2	55757	broad.mit.edu	37	13	96589279	96589279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:96589279C>T	uc001vmt.2	-	17	2046	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	626					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TTAAAGGGTTCACCATTATAA	0.328													221	411					0	0	0.000781405	0	0
MBNL2	10150	broad.mit.edu	37	13	97995409	97995409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:97995409C>T	uc010aft.2	+	4	1295	c.479C>T	c.(478-480)CCA>CTA	p.P160L	MBNL2_uc001vmz.2_Missense_Mutation_p.P160L|MBNL2_uc001vna.2_Missense_Mutation_p.P160L|MBNL2_uc001vnb.2_RNA|MBNL2_uc010tij.1_Intron	NM_144778	NP_659002	Q5VZF2	MBNL2_HUMAN	muscleblind-like 2 isoform 1	160					mRNA processing|regulation of RNA splicing|RNA splicing	cytoplasm|nucleus	RNA binding|zinc ion binding				0	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.218)			CCCGGAAGTCCACCGGTCACT	0.502													195	356					0	0	0.000781405	0	0
NALCN	259232	broad.mit.edu	37	13	101944421	101944421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:101944421C>T	uc001vox.1	-	9	1156	c.967G>A	c.(967-969)GAA>AAA	p.E323K	NALCN_uc001voy.2_Missense_Mutation_p.E38K|NALCN_uc001voz.2_Missense_Mutation_p.E323K|NALCN_uc001vpa.2_Missense_Mutation_p.E323K	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	323	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCAAATGTTTCAATGATAACA	0.408													10	17					0	0	0.00136819	0	0
FGF14	2259	broad.mit.edu	37	13	102568864	102568864	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:102568864C>G	uc001vpe.2	-	1	132	c.132G>C	c.(130-132)CTG>CTC	p.L44L	FGF14_uc001vpf.2_Intron	NM_004115	NP_004106	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1A	44					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding	p.W44C(1)		ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGATATCCACCAGGTTGCCGT	0.677													4	370					0	0	0.000602214	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698526	103698526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:103698526G>A	uc001vpy.3	-	6	1601	c.1004C>T	c.(1003-1005)TCG>TTG	p.S335L		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	335	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTTATAAAACGATGACTCTGG	0.373													16	27					0	0	0.00074312	0	0
MYO16	23026	broad.mit.edu	37	13	109318403	109318403	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:109318403C>T	uc001vqt.1	+	2	258	c.132C>T	c.(130-132)TTC>TTT	p.F44F	MYO16_uc010agk.1_Silent_p.F66F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	44					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			AGGAAGGGTTCCTGAAAAGGC	0.502													12	30					0	0	0.000978159	0	0
MYO16	23026	broad.mit.edu	37	13	109518583	109518583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:109518583C>T	uc001vqt.1	+	12	1478	c.1352C>T	c.(1351-1353)TCT>TTT	p.S451F	MYO16_uc010agk.1_Missense_Mutation_p.S473F|MYO16_uc001vqu.1_Missense_Mutation_p.S251F	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	451	Myosin head-like 1.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CCAATTTATTCTTCCATGGTG	0.308													111	165					0	0	0.000781405	0	0
COL4A2	1284	broad.mit.edu	37	13	111154033	111154033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:111154033G>A	uc001vqx.2	+	41	4068	c.3779G>A	c.(3778-3780)GGG>GAG	p.G1260E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1260	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGCCCACCTGGGAGCCCAGGA	0.517													174	330					0	0	0.000781405	0	0
MCF2L	23263	broad.mit.edu	37	13	113679023	113679023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:113679023C>T	uc001vsu.2	+	3	422	c.400C>T	c.(400-402)CCG>TCG	p.P134S	MCF2L_uc001vsq.2_Missense_Mutation_p.P134S|MCF2L_uc010tjr.1_Missense_Mutation_p.P77S|MCF2L_uc001vsr.2_Missense_Mutation_p.P81S|MCF2L_uc001vss.3_Missense_Mutation_p.P75S|MCF2L_uc010tjs.1_Missense_Mutation_p.P75S	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	107	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CAGCGAGATTCCGGACAAGGA	0.622													232	411					0	0	0.000781405	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216471	20216471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20216471G>A	uc010tkt.1	+	1	885	c.885G>A	c.(883-885)ATG>ATA	p.M295I		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATACTGATATGAAGACAGCTA	0.398													5	23					0	0	0.00116845	0	0
OR4M1	441670	broad.mit.edu	37	14	20248579	20248579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20248579C>T	uc010tku.1	+	1	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATATTTCTATCCTTCTATTTG	0.413													91	347					0	0	0.000781405	0	0
OR4N2	390429	broad.mit.edu	37	14	20296159	20296159	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20296159C>T	uc010tkv.1	+	1	552	c.552C>T	c.(550-552)GTC>GTT	p.V184V		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCCACAGGTCATCAAGCTGG	0.542													37	145					0	0	0.000319135	0	0
OR4K2	390431	broad.mit.edu	37	14	20344984	20344984	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20344984G>A	uc001vwh.1	+	1	558	c.558G>A	c.(556-558)CAG>CAA	p.Q186Q		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGTGTTCCAGTTGGCTTGTG	0.398													110	828					0	0	0.000781405	0	0
OR4K2	390431	broad.mit.edu	37	14	20345023	20345023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20345023G>A	uc001vwh.1	+	1	597	c.597G>A	c.(595-597)ATG>ATA	p.M199I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCCTCTTTATGATCTCAACAA	0.403													130	831					0	0	0.000781405	0	0
OR4K5	79317	broad.mit.edu	37	14	20389353	20389353	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20389353A>T	uc010tkw.1	+	1	588	c.588A>T	c.(586-588)GAA>GAT	p.E196D		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACATCATTGAAATACTAATTG	0.408													14	91					0	0	0.000151284	0	0
OR4K1	79544	broad.mit.edu	37	14	20404475	20404475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20404475C>T	uc001vwj.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTAATTATTTCCTACACCATC	0.433													25	105					0	0	0.000375601	0	0
OR4K1	79544	broad.mit.edu	37	14	20404482	20404482	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20404482C>T	uc001vwj.1	+	1	657	c.657C>T	c.(655-657)ACC>ACT	p.T219T		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTTCCTACACCATCATTTTGA	0.443													26	104					0	0	0.00047179	0	0
OR4K17	390436	broad.mit.edu	37	14	20586009	20586009	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20586009C>A	uc001vwo.1	+	1	444	c.444C>A	c.(442-444)TCC>TCA	p.S148S		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TGTTGGTCTCCATGGCTTTTG	0.423													23	65					9.95505e-16	6.97972e-15	0.000295444	1	0
TEP1	7011	broad.mit.edu	37	14	20841843	20841843	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:20841843G>T	uc001vxe.2	-	45	6638	c.6598C>A	c.(6598-6600)CGT>AGT	p.R2200S	TEP1_uc010ahj.1_5'Flank|TEP1_uc010ahk.2_Missense_Mutation_p.R1543S|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.R2092S|TEP1_uc010tlh.1_Missense_Mutation_p.R538S	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	2200	WD 14.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TTACCTGCACGGGGCTCCATG	0.567													7	189					8.12818e-05	0.000563304	8.12818e-05	1	0
RNASE4	6038	broad.mit.edu	37	14	21167603	21167603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:21167603C>T	uc001vxy.3	+	2	636	c.73C>T	c.(73-75)CCC>TCC	p.P25S	RNASE4_uc001vxx.3_RNA|RNASE4_uc001vya.2_Missense_Mutation_p.P25S	NM_002937	NP_002928	P34096	RNAS4_HUMAN	ribonuclease, RNase A family, 4 precursor	25					mRNA cleavage	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			central_nervous_system(1)	1	all_cancers(95;0.00304)		Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	GBM - Glioblastoma multiforme(265;0.0133)		GCTGGTCCAGCCCTCCTATGG	0.557													210	360					0	0	0.000781405	0	0
EDDM3B	64184	broad.mit.edu	37	14	21238388	21238388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:21238388G>A	uc001vyd.2	+	2	177	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NM_022360	NP_071755	P56851	EP3B_HUMAN	human epididymis-specific 3 beta precursor	27					spermatid development	extracellular region				ovary(1)	1						ACAGAGCAAAGAAGTTTCTTG	0.468													49	67					0	0	0.000781405	0	0
RNASE2	6036	broad.mit.edu	37	14	21424314	21424314	+	Silent	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:21424314A>C	uc010aif.2	+	2	453	c.384A>C	c.(382-384)ACA>ACC	p.T128T	RNASE2_uc001vyl.1_Silent_p.T128T	NM_002934	NP_002925	P10153	RNAS2_HUMAN	ribonuclease, RNase A family, 2 (liver,	128					chemotaxis|RNA catabolic process	extracellular region|lysosome	nucleic acid binding|pancreatic ribonuclease activity			ovary(1)	1	all_cancers(95;0.00381)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)		ATGCGCAGACACCAGCAAACA	0.458													102	171					0	0	0.000781405	0	0
SUPT16H	11198	broad.mit.edu	37	14	21830469	21830469	+	Silent	SNP	G	A	A	rs143347467		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:21830469G>A	uc001wao.2	-	15	2019	c.1680C>T	c.(1678-1680)TCC>TCT	p.S560S		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	560					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		CTCCTTCCACGGACATACTTA	0.373													20	47					0	0	0.000375601	0	0
OR10G2	26534	broad.mit.edu	37	14	22102532	22102532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:22102532G>A	uc010tmc.1	-	1	467	c.467C>T	c.(466-468)GCC>GTC	p.A156V		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		CATGGAGCCGGCGACCCAAGC	0.557													84	165					0	0	0.000781405	0	0
SLC22A17	51310	broad.mit.edu	37	14	23818588	23818588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:23818588G>A	uc001wjl.2	-	3	475	c.419C>T	c.(418-420)CCC>CTC	p.P140L	SLC22A17_uc010akk.2_5'UTR|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Missense_Mutation_p.P140L|SLC22A17_uc010akl.1_Missense_Mutation_p.P140L	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	140	Helical; (Potential).				siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		TACTCCACAGGGGCCCACCAG	0.612													97	165					0	0	0.000781405	0	0
MYH7	4625	broad.mit.edu	37	14	23887503	23887503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:23887503G>A	uc001wjx.2	-	30	4191	c.4085C>T	c.(4084-4086)TCC>TTC	p.S1362F	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1362	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GTTGGCCTTGGAAAGGACGCG	0.652													254	365					0	0	0.000781405	0	0
AP1G2	8906	broad.mit.edu	37	14	24033353	24033353	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:24033353T>C	uc001wkl.2	-	11	1330	c.993A>G	c.(991-993)ACA>ACG	p.T331T	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Silent_p.T259T|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_Intron|AP1G2_uc001wkp.1_RNA|AP1G2_uc010tnp.1_Silent_p.T331T	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	331					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		GAAGCAGTGATGTCAGGGCTA	0.567													103	145					0	0	0.000781405	0	0
DHRS2	10202	broad.mit.edu	37	14	24114504	24114504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:24114504G>A	uc001wkt.3	+	9	1343	c.896G>A	c.(895-897)GGA>GAA	p.G299E	DHRS2_uc001wku.3_3'UTR|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_3'UTR	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	Error:Variant_position_missing_in_Q13268_after_alignment					C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		CCAGGCCCAGGAGCCTGAGGG	0.592													184	299					0	0	0.000781405	0	0
DCAF11	80344	broad.mit.edu	37	14	24587637	24587637	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:24587637C>T	uc001wlv.2	+	7	898	c.618C>T	c.(616-618)TTC>TTT	p.F206F	DCAF11_uc001wlw.2_Silent_p.F206F|DCAF11_uc001wlz.2_Silent_p.F106F|DCAF11_uc001wly.2_Silent_p.F162F|DCAF11_uc001wme.2_Silent_p.F166F|DCAF11_uc010tny.1_Silent_p.F73F|DCAF11_uc001wmd.2_Silent_p.F206F|DCAF11_uc001wmc.2_Silent_p.F106F|DCAF11_uc001wmb.3_Silent_p.F180F|DCAF11_uc001wma.3_Silent_p.F206F	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	206	WD 1.					CUL4 RING ubiquitin ligase complex	protein binding				0						ATGGCCGTTTCCGTAAATTCA	0.488													275	497					0	0	0.000781405	0	0
ADCY4	196883	broad.mit.edu	37	14	24799472	24799472	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:24799472C>G	uc001wov.2	-	7	966	c.960G>C	c.(958-960)CTG>CTC	p.L320L	ADCY4_uc001wow.2_Silent_p.L320L|ADCY4_uc010toh.1_Silent_p.L6L|ADCY4_uc001wox.2_Silent_p.L320L|ADCY4_uc001woy.2_Silent_p.L320L	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	320	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		AACAGTCCCCCAGGATCTTGA	0.567													5	369					0	0	8.12818e-05	0	0
ADCY4	196883	broad.mit.edu	37	14	24803709	24803709	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:24803709G>A	uc001wov.2	-	1	156	c.150C>T	c.(148-150)GCC>GCT	p.A50A	ADCY4_uc001wow.2_Silent_p.A50A|ADCY4_uc010toh.1_5'UTR|ADCY4_uc001wox.2_Silent_p.A50A|ADCY4_uc001woy.2_Silent_p.A50A|ADCY4_uc001woz.3_Silent_p.A50A	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	50	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		CCCTGCCGCTGGCCCAGGCCA	0.637													22	44					0	0	0.000878237	0	0
CTSG	1511	broad.mit.edu	37	14	25043610	25043610	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:25043610G>A	uc001wpq.2	-	4	472	c.435C>T	c.(433-435)GCC>GCT	p.A145A		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	145	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		TGCCCCAGCCGGCCACAGTGC	0.612													79	170					0	0	0.000781405	0	0
NKX2-1	7080	broad.mit.edu	37	14	36988522	36988522	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:36988522G>C	uc001wtt.2	-	1	382	c.41C>G	c.(40-42)TCT>TGT	p.S14C	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Missense_Mutation_p.S44C|NKX2-1_uc001wtv.2_Missense_Mutation_p.S14C|uc001wtw.1_RNA	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	14					epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		CAAGATGTCAGACACTGAGAA	0.617			A		NSCLC								7	298					0	0	8.12818e-05	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724051	38724051	+	Missense_Mutation	SNP	C	T	T	rs112354022	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:38724051C>T	uc001wum.1	-	1	1524	c.1177G>A	c.(1177-1179)GAC>AAC	p.D393N		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	393	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GAGGAGGAGTCGAAAGCCTGA	0.498													154	213					0	0	0.000781405	0	0
FKBP3	2287	broad.mit.edu	37	14	45599954	45599954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:45599954G>A	uc010tqf.1	-	2	231	c.158C>T	c.(157-159)ACA>ATA	p.T53I		NM_002013	NP_002004	Q00688	FKBP3_HUMAN	FK506 binding protein 3, 25kDa	53					protein folding	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor activity				0						CTTGTTAGCTGTCTTGGCCAC	0.338													90	177					0	0	0.000781405	0	0
ARF6	382	broad.mit.edu	37	14	50360931	50360931	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:50360931G>A	uc001wxg.3	+	2	1098	c.477G>A	c.(475-477)GGG>GGA	p.G159G		NM_001663	NP_001654	P62330	ARF6_HUMAN	ADP-ribosylation factor 6	159					cell adhesion|cellular component movement|cortical actin cytoskeleton organization|negative regulation of receptor-mediated endocytosis|positive regulation of actin filament polymerization|positive regulation of establishment of protein localization in plasma membrane|protein localization at cell surface|protein transport|regulation of dendritic spine development|regulation of filopodium assembly|regulation of Rac protein signal transduction|ruffle organization|small GTPase mediated signal transduction|vesicle-mediated transport	cell cortex|endosome membrane|filopodium membrane|Golgi apparatus|membrane fraction|ruffle	GTP binding|GTPase activity|thioesterase binding				0	all_epithelial(31;0.000822)|Breast(41;0.0117)					CCACCTCAGGGGACGGACTCT	0.532													107	176					0	0	0.000781405	0	0
KIAA0831	22863	broad.mit.edu	37	14	55847310	55847310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:55847310G>A	uc001xbx.1	-	7	1012	c.976C>T	c.(976-978)CCC>TCC	p.P326S	FBXO34_uc001xbv.2_Intron|KIAA0831_uc001xbw.1_Missense_Mutation_p.P213S	NM_014924	NP_055739	Q6ZNE5	BAKOR_HUMAN	Barkor	326					autophagic vacuole assembly|positive regulation of autophagy	autophagic vacuole|endoplasmic reticulum|pre-autophagosomal structure membrane	protein binding				0						AGCTTTTTGGGAAGATTTACA	0.403													22	36					0	0	0.000720815	0	0
KTN1	3895	broad.mit.edu	37	14	56108471	56108471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:56108471C>T	uc001xcb.2	+	19	2467	c.2165C>T	c.(2164-2166)TCT>TTT	p.S722F	KTN1_uc001xce.2_Missense_Mutation_p.S722F|KTN1_uc001xcc.2_Missense_Mutation_p.S722F|KTN1_uc001xcd.2_Missense_Mutation_p.S722F|KTN1_uc010trb.1_Missense_Mutation_p.S722F|KTN1_uc001xcf.1_Missense_Mutation_p.S722F|KTN1_uc010aoq.2_5'Flank	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	722	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						ACTCTTGTTTCTGAACAGGTA	0.294			T	RET	papillary thryoid								49	91					0	0	0.000781405	0	0
C14orf101	54916	broad.mit.edu	37	14	57082683	57082683	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:57082683G>A	uc001xcm.2	+	8	1001	c.879G>A	c.(877-879)AGG>AGA	p.R293R	C14orf101_uc001xcj.2_RNA|C14orf101_uc010aot.1_Silent_p.R293R|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_5'UTR|C14orf101_uc001xco.2_5'UTR	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	293						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		CAAATATGAGGACCGAACTCT	0.318													100	203					0	0	0.000781405	0	0
C14orf39	317761	broad.mit.edu	37	14	60921820	60921820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:60921820C>T	uc001xez.3	-	16	1512	c.1402G>A	c.(1402-1404)GAA>AAA	p.E468K	C14orf39_uc010apo.2_Missense_Mutation_p.E179K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	468										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		CCAGGGGATTCCTTTTCTGTT	0.294													13	34					0	0	0.000308642	0	0
KCNH5	27133	broad.mit.edu	37	14	63453898	63453898	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:63453898C>T	uc001xfx.2	-	5	492	c.441G>A	c.(439-441)ACG>ACA	p.T147T	KCNH5_uc001xfy.2_Silent_p.T147T|KCNH5_uc001xfz.1_Silent_p.T89T|KCNH5_uc001xga.2_Silent_p.T89T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	147	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGGCAAATTTCGTCCAACCTT	0.388													13	31					0	0	0.00136819	0	0
ESR2	2100	broad.mit.edu	37	14	64724039	64724039	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:64724039C>T	uc001xha.1	-	6	1464	c.996G>A	c.(994-996)GAG>GAA	p.E332E	ESR2_uc001xgu.2_Silent_p.E332E|ESR2_uc001xgv.2_Silent_p.E332E|ESR2_uc001xgw.2_Intron|ESR2_uc001xgx.2_Silent_p.E332E|ESR2_uc001xgy.1_Silent_p.E332E|ESR2_uc001xgz.1_Silent_p.E332E|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Intron|ESR2_uc010aqd.1_RNA	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	332	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	TCCAACAGCTCTCCAAGAGCC	0.577													264	398					0	0	0.000781405	0	0
ESR2	2100	broad.mit.edu	37	14	64724074	64724074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:64724074C>T	uc001xha.1	-	6	1429	c.961G>A	c.(961-963)GAG>AAG	p.E321K	ESR2_uc001xgu.2_Missense_Mutation_p.E321K|ESR2_uc001xgv.2_Missense_Mutation_p.E321K|ESR2_uc001xgw.2_Intron|ESR2_uc001xgx.2_Missense_Mutation_p.E321K|ESR2_uc001xgy.1_Missense_Mutation_p.E321K|ESR2_uc001xgz.1_Missense_Mutation_p.E321K|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Intron|ESR2_uc010aqd.1_RNA	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	321	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	AGGCTGAGCTCCACAAAGCCT	0.557													165	337					0	0	0.000781405	0	0
SPTB	6710	broad.mit.edu	37	14	65241964	65241964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:65241964G>A	uc001xht.2	-	22	4775	c.4721C>T	c.(4720-4722)GCC>GTC	p.A1574V	SPTB_uc001xhr.2_Missense_Mutation_p.A1574V|SPTB_uc001xhs.2_Missense_Mutation_p.A1574V|SPTB_uc001xhu.2_Missense_Mutation_p.A1574V|SPTB_uc010aqi.2_Missense_Mutation_p.A235V	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1574	Spectrin 13.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CAGCCTCCCGGCCGCTGCCTC	0.682													130	264					0	0	0.000781405	0	0
SPTB	6710	broad.mit.edu	37	14	65262071	65262071	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:65262071C>T	uc001xht.2	-	11	1682	c.1628G>A	c.(1627-1629)TGG>TAG	p.W543*	SPTB_uc001xhr.2_Nonsense_Mutation_p.W543*|SPTB_uc001xhs.2_Nonsense_Mutation_p.W543*|SPTB_uc001xhu.2_Nonsense_Mutation_p.W543*	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	543	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CTCATCCATCCAGTCGATGCT	0.632													80	122					0	0	0.000781405	0	0
RDH12	145226	broad.mit.edu	37	14	68191301	68191301	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:68191301T>C	uc001xjz.3	+	4	504	c.180T>C	c.(178-180)GCT>GCC	p.A60A		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	60					photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	GAGAGCTCGCTAGCCGAGGTA	0.557													96	180					0	0	0.000781405	0	0
TTC9	23508	broad.mit.edu	37	14	71134364	71134364	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:71134364T>C	uc001xmi.2	+	2	833	c.490T>C	c.(490-492)TTC>CTC	p.F164L		NM_015351	NP_056166	Q92623	TTC9A_HUMAN	tetratricopeptide repeat domain 9	164	TPR 3.						binding				0				all cancers(60;0.00545)|BRCA - Breast invasive adenocarcinoma(234;0.00747)|OV - Ovarian serous cystadenocarcinoma(108;0.0538)		AGGGGAGAACTTCAAGGCCCT	0.512													54	94					0	0	0.000781405	0	0
FAM161B	145483	broad.mit.edu	37	14	74413020	74413020	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:74413020T>C	uc001xpd.1	-	2	449	c.343A>G	c.(343-345)ATG>GTG	p.M115V		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						ACCTGCACCATCCCCCTGTCC	0.562													4	671					0	0	0.000602214	0	0
KIAA0317	9870	broad.mit.edu	37	14	75151289	75151289	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:75151289G>A	uc001xqb.2	-	4	616	c.111C>T	c.(109-111)GAC>GAT	p.D37D	KIAA0317_uc010tut.1_Intron|KIAA0317_uc001xqc.2_Silent_p.D37D|KIAA0317_uc001xqd.1_Intron	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	37					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		GGCGCTCGCGGTCCTCATTCT	0.527													35	44					0	0	0.000692331	0	0
ESRRB	2103	broad.mit.edu	37	14	76905876	76905876	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:76905876C>T	uc001xsq.1	+	2	247	c.180C>T	c.(178-180)CCC>CCT	p.P60P	ESRRB_uc001xsr.2_Silent_p.P60P|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	60						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		ACTCGCCACCCATGTTTGCAG	0.677													162	248					0	0	0.000781405	0	0
C14orf145	145508	broad.mit.edu	37	14	81227856	81227856	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:81227856G>A	uc001xux.2	-	16	2649	c.2478C>T	c.(2476-2478)TCC>TCT	p.S826S	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	826	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CACCAAGAATGGATTCCTGTT	0.393													125	217					0	0	0.000781405	0	0
KCNK13	56659	broad.mit.edu	37	14	90650963	90650963	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:90650963C>T	uc001xye.1	+	2	1285	c.843C>T	c.(841-843)ATC>ATT	p.I281I		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	281	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TCATCTCTATCCTCATCAAAC	0.522													106	175					0	0	0.000781405	0	0
SMEK1	55671	broad.mit.edu	37	14	91927794	91927794	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:91927794G>T	uc001xzn.2	-	14	3144	c.2322C>A	c.(2320-2322)TCC>TCA	p.S774S	SMEK1_uc001xzm.2_Silent_p.S761S|SMEK1_uc001xzo.2_Silent_p.S761S|SMEK1_uc010atz.2_Silent_p.S535S	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	774						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		GAGATCCTGGGGATCCAGGTG	0.498													127	189					1.49884e-55	1.05752e-54	0.000781405	1	0
TC2N	123036	broad.mit.edu	37	14	92258712	92258712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:92258712G>A	uc001xzu.3	-	9	1237	c.1046C>T	c.(1045-1047)TCT>TTT	p.S349F	TC2N_uc001xzt.3_Missense_Mutation_p.S349F|TC2N_uc010auc.2_Intron|TC2N_uc001xzv.3_Missense_Mutation_p.S349F	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	349						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		ATCGCTTACAGAAATTTTTGA	0.358													87	182					0	0	0.000781405	0	0
LGMN	5641	broad.mit.edu	37	14	93183739	93183739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:93183739C>T	uc001yav.2	-	5	630	c.304G>A	c.(304-306)GAC>AAC	p.D102N	LGMN_uc001yat.2_Missense_Mutation_p.D102N|LGMN_uc001yau.2_Missense_Mutation_p.D102N|LGMN_uc001yaw.2_Missense_Mutation_p.D102N|LGMN_uc010aul.2_Silent_p.R11R|LGMN_uc001yax.2_Missense_Mutation_p.D102N|LGMN_uc001yay.2_Missense_Mutation_p.D102N	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	102					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		CCAGTGTAGTCCTTCGGGACT	0.438													311	555					0	0	0.000781405	0	0
ITPK1	3705	broad.mit.edu	37	14	93412789	93412789	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:93412789C>A	uc001ybg.2	-	10	1077	c.788G>T	c.(787-789)CGG>CTG	p.R263L	ITPK1_uc001ybe.2_Missense_Mutation_p.R263L|ITPK1_uc001ybf.2_Missense_Mutation_p.R144L|ITPK1_uc001ybh.2_Missense_Mutation_p.R263L	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	263	ATP-grasp.				blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		GGAGAGCTCCCGGATGACCTC	0.627													13	660					0.00136819	0.0093286	0.00136819	1	0
KIAA1409	57578	broad.mit.edu	37	14	94044276	94044276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:94044276C>T	uc001ybv.1	+	15	1852	c.1769C>T	c.(1768-1770)CCT>CTT	p.P590L	KIAA1409_uc001ybs.1_Missense_Mutation_p.P590L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	767						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TTTCGGAGTCCTTTGCGTAGT	0.438													71	120					0	0	0.000781405	0	0
SERPINA12	145264	broad.mit.edu	37	14	94964483	94964483	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:94964483G>A	uc001ydj.2	-	3	1048	c.252C>T	c.(250-252)TCC>TCT	p.S84S		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	84					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		GGCACAGCATGGAGAAAGCTG	0.502													129	239					0	0	0.000781405	0	0
PAPOLA	10914	broad.mit.edu	37	14	96998708	96998708	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:96998708C>G	uc001yfq.2	+	8	858	c.648C>G	c.(646-648)AAC>AAG	p.N216K	PAPOLA_uc001yfp.2_Missense_Mutation_p.N216K|PAPOLA_uc001yfr.2_Missense_Mutation_p.N216K|PAPOLA_uc010twv.1_Missense_Mutation_p.N216K|PAPOLA_uc010avp.2_5'UTR	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	216				CRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYS -> MR KPTSFCVLQFLSDISCFYTSFVLKLFIAILLTQ (in Ref. 2; CAD61935).	mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		TAGTACCAAACATTGACAACT	0.279													3	31					0	0	6.4e-05	0	0
DLK1	8788	broad.mit.edu	37	14	101194759	101194759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:101194759C>T	uc001yhs.3	+	2	247	c.94C>T	c.(94-96)CCC>TCC	p.P32S	DLK1_uc001yhu.3_Missense_Mutation_p.P32S	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	32	Extracellular (Potential).|EGF-like 1.				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				GGCCTGCAACCCCCAAAATGG	0.562													178	326					0	0	0.000781405	0	0
RTL1	388015	broad.mit.edu	37	14	101349454	101349454	+	Missense_Mutation	SNP	G	A	A	rs41286560	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:101349454G>A	uc010txj.1	-	1	1731	c.1672C>T	c.(1672-1674)CCA>TCA	p.P558S	MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	558										pancreas(1)	1						TCTGAGTATGGGTGTGGCAGT	0.577													95	156					0	0	0.000781405	0	0
TECPR2	9895	broad.mit.edu	37	14	102901477	102901477	+	Nonsense_Mutation	SNP	G	T	T	rs138725425		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:102901477G>T	uc001ylw.1	+	9	2471	c.2323G>T	c.(2323-2325)GGA>TGA	p.G775*	TECPR2_uc010awl.2_Nonsense_Mutation_p.G775*|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	775							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GACAGAGCTCGGACCTAGTTG	0.597													10	881					0.000978159	0.00669854	0.000978159	1	0
AMN	81693	broad.mit.edu	37	14	103395162	103395162	+	Silent	SNP	G	A	A	rs141455061	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:103395162G>A	uc001ymg.3	+	5	396	c.363G>A	c.(361-363)GGG>GGA	p.G121G	AMN_uc001ymh.3_Silent_p.G67G	NM_030943	NP_112205	Q9BXJ7	AMNLS_HUMAN	amnionless protein precursor	121	Extracellular (Potential).				lipid metabolic process|lipoprotein metabolic process|multicellular organismal development	integral to membrane|plasma membrane					0				Colorectal(3;0.00739)|READ - Rectum adenocarcinoma(2;0.0336)|Epithelial(152;0.0363)|all cancers(159;0.147)	Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGCGCTCTGGGGACGAGGCAC	0.677													98	178					0	0	0.000781405	0	0
MARK3	4140	broad.mit.edu	37	14	103946755	103946755	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:103946755G>C	uc001ymz.3	+	14	2180	c.1514G>C	c.(1513-1515)CGA>CCA	p.R505P	MARK3_uc001ymx.3_Missense_Mutation_p.R505P|MARK3_uc001ymw.3_Missense_Mutation_p.R505P|MARK3_uc001yna.3_Missense_Mutation_p.R489P|MARK3_uc001ymy.3_Missense_Mutation_p.R426P|MARK3_uc010awp.2_Missense_Mutation_p.R528P|MARK3_uc010tyb.1_Missense_Mutation_p.R300P|MARK3_uc010awq.2_Missense_Mutation_p.R35P	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	505							ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			ATGACACGACGAAATACTTAT	0.343													82	206					0	0	0.000781405	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104206788	104206788	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:104206788G>A	uc001yof.1	-	12	2248	c.1965C>T	c.(1963-1965)GCC>GCT	p.A655A	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Silent_p.A522A	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	655	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				CTGCGGGGGCGGCGGGGCCAT	0.647													278	570					0	0	0.000781405	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104208349	104208349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:104208349C>T	uc001yof.1	-	11	1883	c.1600G>A	c.(1600-1602)GGA>AGA	p.G534R	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Missense_Mutation_p.G401R	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	534	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				GCAGGTGGTCCCGCTGGCGGG	0.617													306	597					0	0	0.000781405	0	0
KIF26A	26153	broad.mit.edu	37	14	104643503	104643503	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:104643503C>G	uc001yos.3	+	12	4378	c.4378C>G	c.(4378-4380)CGG>GGG	p.R1460G		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1460					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GCGGCCTCCCCGGGCTGTACC	0.711													4	268					0	0	0.000274275	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406180	105406180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:105406180G>A	uc010axc.1	-	7	15728	c.15608C>T	c.(15607-15609)TCT>TTT	p.S5203F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S5103F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5203						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GTCCCTGAAAGAGCGCCTAAG	0.562													294	441					0	0	0.000781405	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409727	105409727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:105409727G>A	uc010axc.1	-	7	12181	c.12061C>T	c.(12061-12063)CCT>TCT	p.P4021S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P3921S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4021						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCAGCGGAAGGGGGCTGAACG	0.662													297	630					0	0	0.000781405	0	0
AHNAK2	113146	broad.mit.edu	37	14	105411657	105411657	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:105411657C>T	uc010axc.1	-	7	10251	c.10131G>A	c.(10129-10131)CCG>CCA	p.P3377P	AHNAK2_uc001ypx.2_Silent_p.P3277P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3377						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CGTGGCCCTCCGGGAGCTTCA	0.637													367	586					0	0	0.000781405	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413138	105413138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:105413138C>T	uc010axc.1	-	7	8770	c.8650G>A	c.(8650-8652)GGC>AGC	p.G2884S	AHNAK2_uc001ypx.2_Missense_Mutation_p.G2784S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2884						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGAACGTGGCCCTCTGGGAGT	0.612													353	593					0	0	0.000781405	0	0
C14orf79	122616	broad.mit.edu	37	14	105455377	105455377	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:105455377A>T	uc001ypy.1	+	2	674	c.521A>T	c.(520-522)GAA>GTA	p.E174V	C14orf79_uc001ypz.1_RNA|C14orf79_uc010tym.1_RNA	NM_174891	NP_777551	Q96F83	CN079_HUMAN	hypothetical protein LOC122616	174											0		all_cancers(154;0.0798)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.00326)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0181)			CATTTCCTAGAAATAAGCAGT	0.378													221	350					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	106091118	106091118	+	RNA	SNP	G	T	T	rs112825195		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:106091118G>T	uc010tyt.1	-	3648		c.62293C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTGTACACCTGTGGCTCTCGG	0.647													198	739					1.14094e-113	8.08663e-113	0.000781405	1	0
ADAM6	8755	broad.mit.edu	37	14	106622284	106622284	+	RNA	SNP	G	A	A	rs112834475	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:106622284G>A	uc010tyt.1	-	1110		c.25413C>T								Parts of antibodies, mostly variable regions.												0						AATATCCTTAGTTCTCCATGA	0.433													130	187					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	106667825	106667825	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:106667825G>A	uc010tyt.1	-	877		c.22040C>T								Parts of antibodies, mostly variable regions.												0						GAGTCTCAGGGACCCCCCAGG	0.592													78	114					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	107062397	107062397	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:107062397G>A	uc010tyt.1	-	131		c.6198C>T								Parts of antibodies, mostly variable regions.												0						ACCAGTCCTGGGCCCGACTCC	0.607													86	218					0	0	0.000781405	0	0
GOLGA8DP	100132979	broad.mit.edu	37	15	22709637	22709637	+	Missense_Mutation	SNP	T	G	G	rs140467724	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:22709637T>G	uc010axw.2	-	10	1148	c.250A>C	c.(250-252)AAC>CAC	p.N84H	GOLGA8DP_uc010axx.2_Missense_Mutation_p.N84H|uc010tzw.1_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E												0						CCCATCTGGTTTTTGAGTTTG	0.547													4	772					0	0	0.000602214	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890670	23890670	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:23890670C>T	uc001ywj.3	-	1	506	c.411G>A	c.(409-411)AAG>AAA	p.K137K		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		CCCTGCGCTCCTTCGAGGAGG	0.592													168	192					0	0	0.000781405	0	0
C15orf2	23742	broad.mit.edu	37	15	24922703	24922704	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:24922703_24922704CC>AA	uc001ywo.2	+	1	2163_2164	c.1689_1690CC>AA	c.(1687-1692)GCCCAC>GCAAAC	p.H564N		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	564					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACGCATCTGCCCACCTAACCTC	0.48													12	771					0	0	6.4e-05	0	0
MTMR15	22909	broad.mit.edu	37	15	31220836	31220836	+	Missense_Mutation	SNP	G	A	A	rs139319999		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:31220836G>A	uc001zff.2	+	11	2860	c.2569G>A	c.(2569-2571)GAT>AAT	p.D857N	MTMR15_uc001zfe.2_Missense_Mutation_p.D462N	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	857					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		TGGGATTCCGGATGTCTTCAG	0.557								Direct_reversal_of_damage|Editing_and_processing_nucleases					263	464					0	0	0.000781405	0	0
MIR211	406993	broad.mit.edu	37	15	31357274	31357274	+	RNA	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:31357274T>C	hsa-mir-211|MI0000287	-			c.71T>C			TRPM1_uc010azy.2_Intron|TRPM1_uc001zfl.2_Intron|TRPM1_uc001zfm.2_Intron|uc010ubm.1_RNA																	0						ACCCCTTTGCTGTCCCTGCCC	0.527													173	331					0	0	0.000781405	0	0
FAM7A3	89837	broad.mit.edu	37	15	32693645	32693645	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:32693645C>T	uc001zgb.2	-	9		c.799G>A								Homo sapiens family with sequence similarity 7, member A3, mRNA (cDNA clone IMAGE:4579054).												0						TGCTGGAACTCTAGGGCTGTT	0.478													18	13					0	0	0.00121646	0	0
ARHGAP11A	9824	broad.mit.edu	37	15	32929997	32929997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:32929997C>T	uc001zgy.1	+	12	3745	c.3023C>T	c.(3022-3024)CCT>CTT	p.P1008L	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.P819L|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.P819L	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	1008					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		CCAAAACATCCTATCGGAAAA	0.353													44	93					0	0	0.000509022	0	0
RYR3	6263	broad.mit.edu	37	15	33895497	33895497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:33895497G>A	uc001zhi.2	+	18	2166	c.2096G>A	c.(2095-2097)GGA>GAA	p.G699E	RYR3_uc010bar.2_Missense_Mutation_p.G699E	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	699	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGTGGAGAAGGATGGGGAGGC	0.547													72	126					0	0	0.000781405	0	0
LPCAT4	254531	broad.mit.edu	37	15	34657849	34657849	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:34657849G>A	uc001zig.2	-	2	262	c.168C>T	c.(166-168)ATC>ATT	p.I56I	LPCAT4_uc010bav.1_Silent_p.I56I	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	56	Helical; (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						GAAAGAGGACGATAAAGGCCA	0.557													223	280					0	0	0.000781405	0	0
AQR	9716	broad.mit.edu	37	15	35176813	35176813	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:35176813G>A	uc001ziv.2	-	26	3121	c.2940C>T	c.(2938-2940)CCC>CCT	p.P980P		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	980						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		CTTTAAAAATGGGTTGAGGAG	0.368													39	63					0	0	0.000374591	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40247835	40247835	+	Silent	SNP	T	C	C	rs56302914		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:40247835T>C	uc001zkm.1	+	6	659	c.609T>C	c.(607-609)ATT>ATC	p.I203I	EIF2AK4_uc001zkl.2_Silent_p.I203I|EIF2AK4_uc010bbj.1_5'UTR	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	203					translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		GTTTGGAAATTGCTAGTTTGT	0.373													47	113					0	0	0.000781405	0	0
C15orf23	90417	broad.mit.edu	37	15	40675112	40675112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:40675112C>T	uc001zll.2	+	1	191	c.76C>T	c.(76-78)CCA>TCA	p.P26S	C15orf23_uc010ucp.1_Missense_Mutation_p.P26S|C15orf23_uc001zlo.2_Missense_Mutation_p.P26S|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	26						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		CGATTCCCACCCACTTCCGCC	0.567													284	402					0	0	0.000781405	0	0
VPS18	57617	broad.mit.edu	37	15	41195020	41195020	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:41195020C>T	uc001zne.2	+	5	2742	c.2403C>T	c.(2401-2403)TTC>TTT	p.F801F		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	801					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TCGACCACTTCAAGGAGGCGA	0.567													192	276					0	0	0.000781405	0	0
RTF1	23168	broad.mit.edu	37	15	41772832	41772833	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:41772832_41772833CC>TT	uc001zny.2	+	18	2092_2093	c.2080_2081CC>TT	c.(2080-2082)CCA>TTA	p.P694L		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	694					histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		GGATGGGGCTCCAAGGAGATCT	0.55													165	327					0	0	6.4e-05	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42092084	42092084	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:42092084C>G	uc001zok.3	+	3	464	c.178C>G	c.(178-180)CGA>GGA	p.R60G	MAPKBP1_uc001zoj.3_Missense_Mutation_p.R60G|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.R60G|MAPKBP1_uc010udb.1_Intron|MAPKBP1_uc010bck.2_5'UTR	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	60										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CTGTGACCCCCGATCAGGTTT	0.507													4	415					0	0	0.00024832	0	0
SPTBN5	51332	broad.mit.edu	37	15	42170735	42170735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:42170735G>A	uc001zos.2	-	17	3503	c.3170C>T	c.(3169-3171)GCC>GTC	p.A1057V		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	1092					actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GGCCCGTTGGGCCACTTGTTC	0.637													101	150					0	0	0.000781405	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42436718	42436718	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:42436718G>A	uc001zoz.2	-	17	1968	c.1905C>T	c.(1903-1905)AGC>AGT	p.S635S	PLA2G4F_uc010bcq.2_5'UTR|PLA2G4F_uc001zoy.2_Silent_p.S267S|PLA2G4F_uc010bcr.2_Silent_p.S386S|PLA2G4F_uc001zpa.2_Silent_p.S386S|PLA2G4F_uc010bcs.2_Silent_p.S422S	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	635	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		TGAAGTTAAAGCTCTGGGCGG	0.622													110	176					0	0	0.000781405	0	0
CAPN3	825	broad.mit.edu	37	15	42702858	42702858	+	Missense_Mutation	SNP	G	A	A	rs146923842	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:42702858G>A	uc001zpn.1	+	21	2563	c.2257G>A	c.(2257-2259)GAC>AAC	p.D753N	CAPN3_uc001zpk.1_Missense_Mutation_p.D520N|CAPN3_uc001zpl.1_Missense_Mutation_p.D660N|CAPN3_uc010udf.1_Missense_Mutation_p.D666N|CAPN3_uc010udg.1_Missense_Mutation_p.D618N|CAPN3_uc001zpo.1_Missense_Mutation_p.D747N|CAPN3_uc001zpp.1_Missense_Mutation_p.D661N|CAPN3_uc001zpq.1_Missense_Mutation_p.D241N|CAPN3_uc010bcv.1_Missense_Mutation_p.D88N|CAPN3_uc001zpr.1_Missense_Mutation_p.D88N|CAPN3_uc001zps.1_Missense_Mutation_p.D88N|CAPN3_uc001zpt.1_Missense_Mutation_p.D88N	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	753	EF-hand 3.|Domain IV.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		TGCAGTCAACGACGCAGGTGC	0.532													27	42					0	0	0.000878237	0	0
TGM5	9333	broad.mit.edu	37	15	43552311	43552311	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:43552311C>T	uc001zrd.1	-	3	383	c.375G>A	c.(373-375)CAG>CAA	p.Q125Q	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	125					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	TCACAGACCCCTGGAAGGAGT	0.612													217	316					0	0	0.000781405	0	0
CASC4	113201	broad.mit.edu	37	15	44705593	44705593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:44705593G>A	uc001ztp.2	+	10	1599	c.1300G>A	c.(1300-1302)GAT>AAT	p.D434N	CASC4_uc001ztq.2_Missense_Mutation_p.D378N	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	Error:Variant_position_missing_in_Q6P4E1_after_alignment						integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		ACATTTCAATGATGTCCTTTA	0.313													130	215					0	0	0.000781405	0	0
SPG11	80208	broad.mit.edu	37	15	44918538	44918538	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:44918538C>T	uc001ztx.2	-	11	2266	c.2235G>A	c.(2233-2235)TTG>TTA	p.L745L	SPG11_uc010ueh.1_Silent_p.L745L|SPG11_uc010uei.1_Silent_p.L745L|SPG11_uc001zua.1_Silent_p.L745L	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	745	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		CCATATTCTTCAAAAGTTCAG	0.274													49	70					0	0	0.000781405	0	0
DUOX2	50506	broad.mit.edu	37	15	45398743	45398743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:45398743G>A	uc010bea.2	-	16	2131	c.1928C>T	c.(1927-1929)GCC>GTC	p.A643V	DUOX2_uc001zun.2_Missense_Mutation_p.A643V	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	643	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TCCATCTTTGGCTGCTTCCTT	0.552													272	588					0	0	0.000781405	0	0
SLC30A4	7782	broad.mit.edu	37	15	45781175	45781175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:45781175G>A	uc001zvj.2	-	5	1070	c.758C>T	c.(757-759)TCC>TTC	p.S253F		NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	253	Cytoplasmic (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		TCTGGTAGGGGAATTTGAAGG	0.453													28	58					0	0	0.00127121	0	0
FBN1	2200	broad.mit.edu	37	15	48707889	48707889	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:48707889A>G	uc001zwx.1	-	64	8223	c.7895T>C	c.(7894-7896)ATG>ACG	p.M2632T	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2632	EGF-like 46; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GGCGGGACACATGCACTTGTA	0.547													52	85					0	0	0.000781405	0	0
FBN1	2200	broad.mit.edu	37	15	48789529	48789529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:48789529G>A	uc001zwx.1	-	19	2555	c.2227C>T	c.(2227-2229)CGT>TGT	p.R743C		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	743	EGF-like 11; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TAGGTCCCACGAAGGTTTTCA	0.353													58	59					0	0	0.000781405	0	0
HDC	3067	broad.mit.edu	37	15	50555448	50555448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:50555448C>T	uc001zxz.2	-	2	294	c.188G>A	c.(187-189)CGA>CAA	p.R63Q	HDC_uc010uff.1_Missense_Mutation_p.R63Q|HDC_uc010bet.1_Missense_Mutation_p.R63Q|HDC_uc010beu.1_Missense_Mutation_p.R63Q	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	63					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	CATGATGATTCGTTCAATGTC	0.597													118	196					0	0	0.000781405	0	0
AP4E1	23431	broad.mit.edu	37	15	51250972	51250973	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:51250972_51250973GG>AT	uc001zyx.1	+	14	1862_1863	c.1832_1833GG>AT	c.(1831-1833)AGG>AAT	p.R611N		NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	611					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		CCAGTTGACAGGAGTTGTGAAG	0.347													24	53					0	0	6.4e-05	0	0
AP4E1	23431	broad.mit.edu	37	15	51289545	51289545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:51289545C>T	uc001zyx.1	+	18	2399	c.2369C>T	c.(2368-2370)TCT>TTT	p.S790F	AP4E1_uc010bex.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	790					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		GATACTGTCTCTCACAAGTTC	0.308													4	15					0	0	0.00116845	0	0
MAPK6	5597	broad.mit.edu	37	15	52356190	52356190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:52356190G>A	uc002abp.2	+	6	1953	c.1159G>A	c.(1159-1161)GAT>AAT	p.D387N		NM_002748	NP_002739	Q16659	MK06_HUMAN	mitogen-activated protein kinase 6	387					cell cycle		ATP binding|MAP kinase activity			lung(3)|ovary(1)	4				all cancers(107;0.0028)		AGCTCTGTCCGATGTCACTGA	0.393													36	52					0	0	0.000491102	0	0
UNC13C	440279	broad.mit.edu	37	15	54306845	54306845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:54306845C>T	uc002ack.2	+	1	1745	c.1745C>T	c.(1744-1746)TCG>TTG	p.S582L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	582					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTGTCATCTTCGGACCGGGAG	0.448													16	34					0	0	0.000308642	0	0
UNC13C	440279	broad.mit.edu	37	15	54841857	54841857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:54841857G>A	uc002ack.2	+	26	5845	c.5845G>A	c.(5845-5847)GCT>ACT	p.A1949T		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1949	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TTTCATTGCAGCTAAAGATCT	0.343													30	74					0	0	0.000953801	0	0
PRTG	283659	broad.mit.edu	37	15	56032592	56032592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:56032592G>A	uc002adg.2	-	2	433	c.385C>T	c.(385-387)CTT>TTT	p.L129F		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	129	Ig-like 1.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		GATAAGGCAAGATGAGCTTTT	0.373													335	558					0	0	0.000781405	0	0
RFX7	64864	broad.mit.edu	37	15	56386375	56386375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:56386375G>A	uc010bfn.2	-	9	3551	c.3551C>T	c.(3550-3552)CCA>CTA	p.P1184L	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.P998L	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	1087					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						ATTAGATACTGGATAGAGGGT	0.463													88	148					0	0	0.000781405	0	0
AQP9	366	broad.mit.edu	37	15	58467154	58467154	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:58467154C>T	uc002aez.2	+	4	771	c.414C>T	c.(412-414)ATC>ATT	p.I138I	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Silent_p.I73I	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	138	Extracellular (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		AACTGCTGATCGTGGGAGAAA	0.458													26	52					0	0	0.000720815	0	0
NARG2	79664	broad.mit.edu	37	15	60768358	60768358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:60768358G>A	uc002agp.2	-	3	285	c.50C>T	c.(49-51)TCC>TTC	p.S17F	NARG2_uc002ago.2_5'UTR|NARG2_uc010bgk.2_Missense_Mutation_p.S17F|NARG2_uc002agr.1_Missense_Mutation_p.S17F	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	17						nucleus				ovary(1)|lung(1)	2						ATTTTTGGGGGAAATATCCCT	0.323													92	118					0	0	0.000781405	0	0
HERC1	8925	broad.mit.edu	37	15	63908060	63908060	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:63908060G>A	uc002amp.2	-	76	14149	c.14001C>T	c.(13999-14001)ATC>ATT	p.I4667I		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4667	HECT.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TTCCACCAGGGATTATAGGAA	0.403													20	40					0	0	0.000375601	0	0
HERC1	8925	broad.mit.edu	37	15	64015516	64015516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:64015516C>T	uc002amp.2	-	19	3755	c.3607G>A	c.(3607-3609)GGA>AGA	p.G1203R	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1203					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TCTTCATTTCCAGAAAGTGCT	0.363													6	10					0	0	8.12818e-05	0	0
PLEKHO2	80301	broad.mit.edu	37	15	65157173	65157174	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:65157173_65157174CC>AA	uc002anv.2	+	6	693_694	c.559_560CC>AA	c.(559-561)CCC>AAC	p.P187N	PLEKHO2_uc010bgz.2_Intron|PLEKHO2_uc002anw.2_Missense_Mutation_p.P137N	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	187	Pro-rich.									ovary(1)|lung(1)	2						AGTGTTTGCCCCCAGCAATCAT	0.609													14	737					0	0	6.4e-05	0	0
CORO2B	10391	broad.mit.edu	37	15	69011130	69011130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:69011130C>T	uc002arj.3	+	9	1090	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	CORO2B_uc010bic.2_Missense_Mutation_p.S349F|CORO2B_uc002ark.2_Missense_Mutation_p.S121F	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	354					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						GAGCCCATCTCCATGATCGTG	0.627													102	137					0	0	0.000781405	0	0
SPESP1	246777	broad.mit.edu	37	15	69238433	69238433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:69238433G>A	uc002arn.1	+	2	688	c.560G>A	c.(559-561)AGC>AAC	p.S187N	NOX5_uc002arp.1_Intron|NOX5_uc002arq.1_Intron|NOX5_uc010bid.1_Intron|NOX5_uc002aro.2_Intron	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	187					multicellular organismal development	acrosomal vesicle					0						TTAGATAAGAGCACTGGCATT	0.433													113	179					0	0	0.000781405	0	0
NR2E3	10002	broad.mit.edu	37	15	72104741	72104741	+	Missense_Mutation	SNP	T	C	C	rs76502381		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:72104741T>C	uc002ati.2	+	5	827	c.637T>C	c.(637-639)TCC>CCC	p.S213P	NR2E3_uc002ath.1_Missense_Mutation_p.S213P	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	213					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						CTCCTCTTCCTCCCCCTGCGG	0.572													4	617					0	0	0.000157383	0	0
NR2E3	10002	broad.mit.edu	37	15	72109899	72109899	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:72109899G>A	uc002ati.2	+	9	1297	c.1107G>A	c.(1105-1107)GGG>GGA	p.G369G		NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	369					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						TCAGGTTTGGGAAATTGCTCC	0.552													252	561					0	0	0.000781405	0	0
MYO9A	4649	broad.mit.edu	37	15	72192297	72192297	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:72192297C>G	uc002atl.3	-	24	3674	c.3201G>C	c.(3199-3201)GTG>GTC	p.V1067V	MYO9A_uc010biq.2_Silent_p.V687V|MYO9A_uc002atn.1_Silent_p.V1048V|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1067	IQ 2.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CATCCTTCTGCACAGCTGCAT	0.473													3	33					0	0	6.4e-05	0	0
ADPGK	83440	broad.mit.edu	37	15	73044794	73044794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:73044794G>A	uc002avg.3	-	7	1476	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F	ADPGK_uc002ave.3_Missense_Mutation_p.S186F|ADPGK_uc010ukw.1_Missense_Mutation_p.S403F|ADPGK_uc002avf.3_Missense_Mutation_p.S460F|ADPGK_uc002avi.3_Missense_Mutation_p.S338F|ADPGK_uc002avh.3_Missense_Mutation_p.S222F	NM_031284	NP_112574	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	461	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding				0						GAAGTGGAAGGATATTCCCTC	0.488													85	165					0	0	0.000781405	0	0
ISLR2	57611	broad.mit.edu	37	15	74427119	74427119	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:74427119A>G	uc002axd.2	+	4	2793	c.2024A>G	c.(2023-2025)GAG>GGG	p.E675G	ISLR2_uc002axe.2_Missense_Mutation_p.E675G|ISLR2_uc010bjg.2_Missense_Mutation_p.E675G|ISLR2_uc010bjf.2_Missense_Mutation_p.E675G	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	675	Cytoplasmic (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GTGCAGGGGGAGGGCCTTGAT	0.682											OREG0023277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	653					0	0	0.000673444	0	0
CYP1A1	1543	broad.mit.edu	37	15	75012934	75012934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:75012934C>T	uc002ayp.3	-	7	1557	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.E215K|CYP1A1_uc010bjx.2_Missense_Mutation_p.E215K|CYP1A1_uc002ayq.3_Missense_Mutation_p.E479K|CYP1A1_uc010bjy.2_Missense_Mutation_p.E450K	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	479					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	ACGCTGAATTCCACCCGTTGC	0.557									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				215	398					0	0	0.000781405	0	0
CYP1A1	1543	broad.mit.edu	37	15	75014765	75014766	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:75014765_75014766CC>AA	uc002ayp.3	-	2	795_796	c.673_674GG>TT	c.(673-675)GGG>TTG	p.G225L	CYP1A1_uc010bjv.2_Intron|CYP1A1_uc010bjw.2_Intron|CYP1A1_uc010bju.2_5'UTR|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Missense_Mutation_p.G225L|CYP1A1_uc010bjy.2_Missense_Mutation_p.G225L|CYP1A1_uc010bjz.1_5'UTR	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	225					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	AACCACCTCCCCGAAATTATTA	0.495									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				12	859					0	0	6.4e-05	0	0
SIN3A	25942	broad.mit.edu	37	15	75722576	75722576	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:75722576G>A	uc002bai.2	-	2	400	c.141C>T	c.(139-141)ACC>ACT	p.T47T	SIN3A_uc002baj.2_Silent_p.T47T|SIN3A_uc010uml.1_Silent_p.T47T|SIN3A_uc002bak.3_Silent_p.T47T	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	47					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						CTGACTGCATGGTCTCAGACA	0.557													53	63					0	0	0.000781405	0	0
LOC645752	645752	broad.mit.edu	37	15	78211517	78211517	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:78211517C>G	uc010bky.2	-	11	1014	c.250G>C	c.(250-252)GTC>CTC	p.V84L		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TTGCTCAGGACACTCAAGGCC	0.557													7	866					0	0	0.000673444	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78317818	78317818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:78317818G>A	uc002bcy.3	-	5	869	c.869C>T	c.(868-870)CCC>CTC	p.P290L	TBC1D2B_uc010bla.2_Missense_Mutation_p.P290L	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	290						intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						AAAATCAAAGGGGAATCCTGA	0.299													52	67					0	0	0.000781405	0	0
RASGRF1	5923	broad.mit.edu	37	15	79350699	79350699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:79350699C>T	uc002beq.2	-	3	883	c.508G>A	c.(508-510)GAG>AAG	p.E170K	RASGRF1_uc002bep.2_Missense_Mutation_p.E170K|RASGRF1_uc010blm.1_Missense_Mutation_p.E92K|RASGRF1_uc002ber.3_Missense_Mutation_p.E170K	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	170					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CGCTCGATCTCGATCTCCCCA	0.607													133	162					0	0	0.000781405	0	0
EFTUD1	79631	broad.mit.edu	37	15	82456262	82456262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:82456262G>A	uc002bgt.1	-	16	1983	c.1814C>T	c.(1813-1815)CCA>CTA	p.P605L	EFTUD1_uc002bgu.1_Missense_Mutation_p.P554L	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	605					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TATAAATGGTGGGCAGGATGG	0.413													28	50					0	0	0.00106085	0	0
AP3B2	8120	broad.mit.edu	37	15	83349745	83349746	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:83349745_83349746GG>AA	uc010uoh.1	-	7	791_792	c.614_615CC>TT	c.(613-615)GCC>GTT	p.A205V	AP3B2_uc010uoi.1_Missense_Mutation_p.A205V|AP3B2_uc010uoj.1_Missense_Mutation_p.A173V|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	205					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			CCTCCTCAAAGGCCATCACCAC	0.614													132	336					0	0	6.4e-05	0	0
HDGFRP3	50810	broad.mit.edu	37	15	83876084	83876084	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:83876084C>A	uc002bjs.1	-	1	238	c.83G>T	c.(82-84)CGG>CTG	p.R28L		NM_016073	NP_057157	Q9Y3E1	HDGR3_HUMAN	hepatoma-derived growth factor, related protein	28	PWWP.				cell proliferation	nucleus	growth factor activity				0						ggTACTCACCCGGGCCGGCCA	0.602													29	39					1.45844e-13	1.02117e-12	0.000491102	1	0
SH3GL3	6457	broad.mit.edu	37	15	84245413	84245413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:84245413G>A	uc002bjw.2	+	6	739	c.544G>A	c.(544-546)GAA>AAA	p.E182K	SH3GL3_uc010uot.1_Missense_Mutation_p.E182K|SH3GL3_uc002bjx.2_Missense_Mutation_p.E113K|SH3GL3_uc002bju.2_Missense_Mutation_p.E190K|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	182	BAR.|Potential.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						ACCAGACGAAGAAGTCAGACA	0.373													25	32					0	0	0.00047179	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84553918	84553918	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:84553918G>A	uc002bjz.3	+	10	1250	c.1026G>A	c.(1024-1026)CAG>CAA	p.Q342Q	ADAMTSL3_uc010bmt.1_Silent_p.Q342Q|ADAMTSL3_uc010bmu.1_Silent_p.Q342Q	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	342						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCAGTCATCAGTGGAGACAAA	0.468													8	26					0	0	0.000274275	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84561641	84561641	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:84561641G>A	uc002bjz.3	+	13	1691	c.1467_splice	c.e13+1	p.Q489_splice	ADAMTSL3_uc010bmt.1_Splice_Site_p.Q489_splice|ADAMTSL3_uc010bmu.1_Splice_Site_p.Q489_splice	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor							proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GTGGTCTCAGGTAAGATTTGA	0.398													14	32					0	0	0.000151284	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85055739	85055739	+	RNA	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:85055739A>C	uc002bkm.2	-	6		c.821T>G				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						GCCTCTCCTCATGTTCACGTA	0.547													3	64					0	0	6.4e-05	0	0
ALPK3	57538	broad.mit.edu	37	15	85382953	85382953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:85382953C>T	uc002ble.2	+	5	1216	c.1049C>T	c.(1048-1050)GCC>GTC	p.A350V		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	350	Ig-like 1.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GAAGATGCCGCCATCTACCAG	0.632													319	488					0	0	0.000781405	0	0
ACAN	176	broad.mit.edu	37	15	89381943	89381944	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:89381943_89381944GG>AA	uc010upo.1	+	3	494_495	c.120_121GG>AA	c.(118-123)AGGGTC>AGAATC	p.V41I	ACAN_uc002bmx.2_Missense_Mutation_p.V41I|ACAN_uc010upp.1_Missense_Mutation_p.V41I|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	41					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCCCGCTGAGGGTCCTCCTGGG	0.604													219	416					0	0	6.4e-05	0	0
ACAN	176	broad.mit.edu	37	15	89403630	89403630	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:89403630C>T	uc010upo.1	+	13	7280	c.6906C>T	c.(6904-6906)TGC>TGT	p.C2302C	ACAN_uc010upp.1_Intron|ACAN_uc002bna.2_Intron	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2302					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ACGTCATATGCCTGTGCCCCC	0.632													71	123					0	0	0.000781405	0	0
KIF7	374654	broad.mit.edu	37	15	90172234	90172234	+	Missense_Mutation	SNP	C	A	A	rs143316368	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:90172234C>A	uc002bof.2	-	18	3714	c.3637G>T	c.(3637-3639)GGT>TGT	p.G1213C	KIF7_uc010upw.1_Missense_Mutation_p.G699C|C15orf42_uc010upv.1_Intron	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	1213					microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GCGTTCACACCGCCGAGCTTC	0.552													9	784					0.00136819	0.0093286	0.00136819	1	0
MESP1	55897	broad.mit.edu	37	15	90293450	90293450	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:90293450C>G	uc002bol.2	-	2	810	c.732G>C	c.(730-732)CCG>CCC	p.P244P		NM_018670	NP_061140	Q9BRJ9	MESP1_HUMAN	mesoderm posterior 1	244					cardiac atrium formation|cardiac cell fate determination|cardiac vascular smooth muscle cell differentiation|cardiac ventricle formation|cardioblast anterior-lateral migration|cardioblast migration to the midline involved in heart field formation|endothelial cell differentiation|gastrulation|growth involved in heart morphogenesis|heart looping|lateral mesoderm development|negative regulation of endodermal cell fate specification|negative regulation of mesodermal cell fate specification|negative regulation of transcription, DNA-dependent|neurogenesis|Notch signaling pathway|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|positive regulation of hepatocyte differentiation|positive regulation of Notch signaling pathway|positive regulation of striated muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|secondary heart field specification|sinoatrial node cell differentiation|sinus venosus morphogenesis		sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			GCACGTCGCCCGGAAGGAGCT	0.657													4	615					0	0	0.00024832	0	0
UNC45A	55898	broad.mit.edu	37	15	91496790	91496790	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:91496790G>T	uc002bqg.2	+	20	3019	c.2679G>T	c.(2677-2679)TCG>TCT	p.S893S	UNC45A_uc002bqd.2_Silent_p.S878S|UNC45A_uc010uqr.1_Silent_p.S285S|UNC45A_uc002bqi.2_Silent_p.S171S|RCCD1_uc002bqj.2_5'Flank|RCCD1_uc002bqk.2_5'Flank|RCCD1_uc002bql.2_5'Flank	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	893					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			TGGAGGCCTCGAGGGAGATTG	0.602													10	971					8.12818e-05	0.000563304	8.12818e-05	1	0
LYSMD4	145748	broad.mit.edu	37	15	100269448	100269448	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:100269448G>A	uc002bvk.2	-	3	834	c.771C>T	c.(769-771)ATC>ATT	p.I257I	LYSMD4_uc002bvj.1_Intron|LYSMD4_uc010bou.1_Intron|LYSMD4_uc002bvl.2_Silent_p.I258I|LYSMD4_uc002bvm.2_3'UTR|LYSMD4_uc010bov.2_Silent_p.I257I			Q5XG99	LYSM4_HUMAN	SubName: Full=cDNA FLJ77040, highly similar to Homo sapiens LysM, putative peptidoglycan-binding, domain containing 4, mRNA; SubName: Full=LysM, putative peptidoglycan-binding, domain containing 4, isoform CRA_c;	257	Cytoplasmic (Potential).				cell wall macromolecule catabolic process	integral to membrane					0	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			AGCCATTGGGGATGACAGTTG	0.488													342	564					0	0	0.000781405	0	0
PCSK6	5046	broad.mit.edu	37	15	101929707	101929707	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:101929707G>A	uc002bwy.2	-	10	1586	c.1272C>T	c.(1270-1272)CCC>CCT	p.P424P	PCSK6_uc010bpd.2_Silent_p.P294P|PCSK6_uc010bpe.2_Silent_p.P424P|PCSK6_uc002bxa.2_Silent_p.P424P|PCSK6_uc002bxb.2_Silent_p.P424P|PCSK6_uc002bxc.1_Silent_p.P424P|PCSK6_uc002bxd.1_Silent_p.P424P|PCSK6_uc002bxe.2_Silent_p.P424P|PCSK6_uc002bxg.1_Silent_p.P424P	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	424	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCGCCACCATGGGGGCAGAGA	0.473													225	428					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	15	102292829	102292829	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:102292829C>G	uc010usj.1	+	4	476	c.417C>G	c.(415-417)CAC>CAG	p.H139Q	uc002bxo.2_5'Flank|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CGAGAAGACACTCGTGGAGGC	0.597													3	105					0	0	0.00116845	0	0
WASH3P	374666	broad.mit.edu	37	15	102516407	102516407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:102516407C>T	uc002cdi.2	+	11	2153	c.733C>T	c.(733-735)CCT>TCT	p.P245S	WASH3P_uc002cdl.2_Missense_Mutation_p.P245S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.P245S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						AGACTCCATCCCTCCTCTGCC	0.647													19	207					0	0	0.00127121	0	0
Unknown	0	broad.mit.edu	37	16	66940	66940	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:66940G>A	uc002cfg.1	-	5	1355	c.696C>T	c.(694-696)AGC>AGT	p.S232S		NM_182905	NP_878908			WAS protein family homolog 1																		GCTCTCTCTTGCTGATGGACA	0.597													41	190					0	0	0.000781405	0	0
AXIN1	8312	broad.mit.edu	37	16	347065	347065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:347065G>A	uc002cgp.1	-	7	2123	c.1946C>T	c.(1945-1947)ACC>ATC	p.T649I	AXIN1_uc002cgq.1_Missense_Mutation_p.T649I	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	649	Interaction with RNF111.|Interaction with PPP2CA.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				CCCGTGGCCGGTCCTGCGGTG	0.627													371	562					0	0	0.000781405	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270244	1270244	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:1270244C>T	uc002cks.2	+	35	6560	c.6312C>T	c.(6310-6312)ATC>ATT	p.I2104I	CACNA1H_uc002ckt.2_Silent_p.I2098I|CACNA1H_uc002cku.2_Silent_p.I799I|CACNA1H_uc010brj.2_Silent_p.I815I|CACNA1H_uc002ckv.2_Silent_p.I793I	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2104	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TCAGCCACATCACCAGCTCCG	0.741													106	169					0	0	0.000781405	0	0
NUBP2	10101	broad.mit.edu	37	16	1838655	1838655	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:1838655C>T	uc002cmw.3	+	7	845	c.756C>T	c.(754-756)TTC>TTT	p.F252F	NUBP2_uc002cmx.3_Silent_p.F111F|NUBP2_uc010brx.2_Silent_p.F192F	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	252						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						GCCCCGCCTTCGCTGCACTCA	0.667													123	149					0	0	0.000781405	0	0
RPS2	6187	broad.mit.edu	37	16	2012222	2012222	+	Silent	SNP	G	A	A	rs145826103		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2012222G>A	uc002cnn.2	-	6	947	c.759C>T	c.(757-759)CCC>CCT	p.P253P	RPS2_uc010bsa.1_RNA|RPS2_uc002cnl.2_Silent_p.P195P|RPS2_uc002cnm.2_RNA|RPS2_uc002cno.2_Silent_p.P253P|SNHG9_uc002cnr.2_5'Flank|SNORA78_uc002cns.1_5'Flank	NM_002952	NP_002943	P15880	RS2_HUMAN	ribosomal protein S2	253					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleoplasm	fibroblast growth factor 1 binding|fibroblast growth factor 3 binding|RNA binding|structural constituent of ribosome				0						TCCAGAGGTCGGGGGTCAGGT	0.547													192	328					0	0	0.000781405	0	0
CASKIN1	57524	broad.mit.edu	37	16	2228577	2228577	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2228577C>G	uc010bsg.1	-	20	4302	c.4270G>C	c.(4270-4272)GAC>CAC	p.D1424H		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	1424					signal transduction	cytoplasm				skin(2)	2						TCCAGCTGGTCGGCCAGGTCG	0.537													86	125					0	0	0.000781405	0	0
CASKIN1	57524	broad.mit.edu	37	16	2231004	2231004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2231004G>A	uc010bsg.1	-	18	2397	c.2365C>T	c.(2365-2367)CAG>TAG	p.Q789*		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	789	Pro-rich.				signal transduction	cytoplasm				skin(2)	2						CCAAGGGCCTGGGGAGAGCCT	0.711													98	190					0	0	0.000781405	0	0
CASKIN1	57524	broad.mit.edu	37	16	2234978	2234978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2234978G>A	uc010bsg.1	-	13	1330	c.1298C>T	c.(1297-1299)CCC>CTC	p.P433L		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	433	CASK-binding (By similarity).				signal transduction	cytoplasm				skin(2)	2						AGGCTTGGCGGGGCTGTCCCC	0.662													294	422					0	0	0.000781405	0	0
C16orf79	283870	broad.mit.edu	37	16	2260031	2260031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2260031C>T	uc010bsh.2	-	4	535	c.358G>A	c.(358-360)GAG>AAG	p.E120K	C16orf79_uc002cpi.1_Missense_Mutation_p.E120K	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	120	BRICHOS.					integral to membrane				central_nervous_system(1)	1						TGGTGCTCCTCAGGGCGGTAA	0.687													82	131					0	0	0.000781405	0	0
DCI	1632	broad.mit.edu	37	16	2294496	2294497	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2294496_2294497GG>AA	uc002cpr.2	-	4	387_388	c.351_352CC>TT	c.(349-354)AGCCCC>AGTTCC	p.P118S	DCI_uc002cps.2_Missense_Mutation_p.P118S	NM_001919	NP_001910	P42126	ECI1_HUMAN	dodecenoyl-Coenzyme A delta isomerase precursor	118					fatty acid beta-oxidation	mitochondrial matrix	dodecenoyl-CoA delta-isomerase activity				0						TAGTGGGCGGGGCTCCTCCCAC	0.668													66	121					0	0	6.4e-05	0	0
CCNF	899	broad.mit.edu	37	16	2499286	2499286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2499286C>T	uc002cqd.1	+	12	1310	c.1222C>T	c.(1222-1224)CCC>TCC	p.P408S	CCNF_uc002cqe.1_Missense_Mutation_p.P100S	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	408					cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				TGTCTAGGTCCCCACTGTGGT	0.652													234	385					0	0	0.000781405	0	0
SRRM2	23524	broad.mit.edu	37	16	2817170	2817171	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2817170_2817171CG>AT	uc002crk.2	+	11	7190_7191	c.6641_6642CG>AT	c.(6640-6642)CCG>CAT	p.P2214H	SRRM2_uc002crj.1_Missense_Mutation_p.P2118H|SRRM2_uc002crl.1_Missense_Mutation_p.P2214H|SRRM2_uc010bsu.1_Missense_Mutation_p.P2118H	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2214	Ala-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GTTCCAGCCCCGGTGCCTCTCA	0.614													15	686					0	0	6.4e-05	0	0
ZNF213	7760	broad.mit.edu	37	16	3188445	3188445	+	Silent	SNP	C	A	A	rs7194765	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:3188445C>A	uc010uws.1	+	3	873	c.426C>A	c.(424-426)CCC>CCA	p.P142P	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_3'UTR|ZNF213_uc010bth.2_Silent_p.P142P|ZNF213_uc010uwt.1_Silent_p.P142P	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	142					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGGCGGAACCCGAGGCTGCAG	0.682													9	764					0.000673444	0.0046179	0.000673444	1	0
OR1F1	4992	broad.mit.edu	37	16	3254585	3254585	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:3254585C>T	uc010uwu.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGACAATTTCCTCCTAGCTG	0.502													233	440					0	0	0.000781405	0	0
ZNF174	7727	broad.mit.edu	37	16	3454643	3454643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:3454643G>A	uc002cvc.2	+	2	1435	c.620G>A	c.(619-621)GGG>GAG	p.G207E	ZNF174_uc002cva.2_Missense_Mutation_p.G207E|ZNF174_uc002cvb.2_Missense_Mutation_p.G207E	NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	207					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						AAATTGGCTGGGACAGGTAAA	0.517													177	283					0	0	0.000781405	0	0
BTBD12	84464	broad.mit.edu	37	16	3640521	3640521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:3640521G>A	uc002cvp.2	-	12	3745	c.3118C>T	c.(3118-3120)CCC>TCC	p.P1040S		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1040	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CCGCCCTGGGGAGGCCCCAAT	0.662								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				363	490					0	0	0.000781405	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857458	9857458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:9857458C>T	uc002czo.3	-	13	4491	c.3943G>A	c.(3943-3945)GAC>AAC	p.D1315N	GRIN2A_uc010uym.1_Missense_Mutation_p.D1315N|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1315	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGTTCCCTGTCCTTGAGGCTT	0.512													20	51					0	0	0.000375601	0	0
FAM18A	780776	broad.mit.edu	37	16	10867218	10867218	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:10867218C>T	uc010buo.1	-	5	676	c.405G>A	c.(403-405)TGG>TGA	p.W135*	FAM18A_uc010uyr.1_RNA|FAM18A_uc010uys.1_RNA|FAM18A_uc010uyt.1_RNA|FAM18A_uc010bun.2_RNA|FAM18A_uc010uyu.1_RNA|FAM18A_uc002dad.3_RNA|FAM18A_uc002daf.1_RNA|FAM18A_uc002dae.1_Nonsense_Mutation_p.W71*	NM_001079512	NP_001072980	A6NH52	FA18A_HUMAN	hypothetical protein LOC780776	135	Helical; (Potential).					integral to membrane					0						AAAACACAATCCATATCATGG	0.423													156	248					0	0	0.000781405	0	0
CIITA	4261	broad.mit.edu	37	16	11001684	11001684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:11001684G>A	uc002dai.3	+	11	2468	c.2335G>A	c.(2335-2337)GCT>ACT	p.A779T	CIITA_uc002daj.3_Missense_Mutation_p.A780T|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.A779T|CIITA_uc002dah.2_Missense_Mutation_p.A731T|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	779					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						GCCATCGGCGGCTGCCTCGGT	0.687			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								263	410					0	0	0.000781405	0	0
TXNDC11	51061	broad.mit.edu	37	16	11785503	11785504	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:11785503_11785504CC>AA	uc010buu.1	-	9	1685_1686	c.1623_1624GG>TT	c.(1621-1626)AGGGGT>AGTTGT	p.541_542RG>SC	TXNDC11_uc002dbg.1_Missense_Mutation_p.514_515RG>SC	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	541_542					cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						CCTGACACACCCCTGCTTATGG	0.46													12	851					0	0	6.4e-05	0	0
MYH11	4629	broad.mit.edu	37	16	15815413	15815413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:15815413C>T	uc002ddy.2	-	32	4551	c.4444G>A	c.(4444-4446)GAA>AAA	p.E1482K	MYH11_uc002ddv.2_Missense_Mutation_p.E1489K|MYH11_uc002ddw.2_Missense_Mutation_p.E1482K|MYH11_uc002ddx.2_Missense_Mutation_p.E1489K|MYH11_uc010bvg.2_Missense_Mutation_p.E1314K|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Missense_Mutation_p.E188K|NDE1_uc002ddz.1_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1482	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCCTTGGTTTCCTTCTCCCTG	0.532			T	CBFB	AML								213	366					0	0	0.000781405	0	0
MYH11	4629	broad.mit.edu	37	16	15870018	15870018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:15870018G>A	uc002ddy.2	-	8	913	c.806C>T	c.(805-807)TCA>TTA	p.S269L	MYH11_uc002ddv.2_Missense_Mutation_p.S276L|MYH11_uc002ddw.2_Missense_Mutation_p.S269L|MYH11_uc002ddx.2_Missense_Mutation_p.S276L|MYH11_uc010bvg.2_Missense_Mutation_p.S101L|MYH11_uc002dea.1_5'UTR	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	269	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						AATTGCCCGTGATTTTTCTAG	0.493			T	CBFB	AML								139	265					0	0	0.000781405	0	0
MYH11	4629	broad.mit.edu	37	16	15880532	15880532	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:15880532G>A	uc002ddy.2	-	5	695	c.588C>T	c.(586-588)GCC>GCT	p.A196A	MYH11_uc002ddv.2_Silent_p.A196A|MYH11_uc002ddw.2_Silent_p.A196A|MYH11_uc002ddx.2_Silent_p.A196A|MYH11_uc010bvg.2_Missense_Mutation_p.R22C|MYH11_uc002deb.3_Silent_p.A196A	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	196	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						AGGCCACCACGGCCAGGTACT	0.537			T	CBFB	AML								32	52					0	0	0.000814825	0	0
ABCC6	368	broad.mit.edu	37	16	16282690	16282690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:16282690G>A	uc002den.3	-	13	1814	c.1777C>T	c.(1777-1779)CAG>TAG	p.Q593*	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Nonsense_Mutation_p.Q605*	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	593	ABC transmembrane type-1 1.|Helical; Name=11; (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CACCTCACCTGGACGAGGGAG	0.572													27	66					0	0	0.000720815	0	0
XYLT1	64131	broad.mit.edu	37	16	17353103	17353103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:17353103G>A	uc002dfa.2	-	3	740	c.655C>T	c.(655-657)CCC>TCC	p.P219S		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	219	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CTGTCCCCGGGAGGCAGCACC	0.582													131	285					0	0	0.000781405	0	0
NOMO2	283820	broad.mit.edu	37	16	18554963	18554963	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:18554963G>A	uc002dfe.2	-	7	783	c.711C>T	c.(709-711)CTC>CTT	p.L237L	NOMO2_uc002dff.2_Silent_p.L237L|NOMO2_uc010bvx.2_Silent_p.L70L	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	237	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						AAGAAGAAAAGAGAAGAAACT	0.453													160	285					0	0	0.000781405	0	0
COQ7	10229	broad.mit.edu	37	16	19083404	19083404	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:19083404G>A	uc002dfr.2	+	2	288	c.228G>A	c.(226-228)CGG>CGA	p.R76R	COQ7_uc002dfs.2_Silent_p.R62R	NM_016138	NP_057222	Q99807	COQ7_HUMAN	COQ7 protein	76	1.|2 X approximate tandem repeats.				ubiquinone biosynthetic process	mitochondrial inner membrane|nucleus	oxidoreductase activity|transition metal ion binding			skin(1)	1						TCCTGGGTCGGACCAGCGTCG	0.542											OREG0023656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	260	434					0	0	0.000781405	0	0
SYT17	51760	broad.mit.edu	37	16	19234378	19234378	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:19234378G>C	uc002dfw.2	+	6	1294	c.963G>C	c.(961-963)GAG>GAC	p.E321D	SYT17_uc002dfx.2_Missense_Mutation_p.E260D|SYT17_uc002dfy.2_Missense_Mutation_p.E317D|SYT17_uc002dfv.1_Missense_Mutation_p.E260D	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	321						membrane|synaptic vesicle	transporter activity			ovary(1)	1						ATGAAGTGGAGCTGGGGGAGC	0.458													3	192					0	0	6.4e-05	0	0
ACSM5	54988	broad.mit.edu	37	16	20422920	20422920	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:20422920C>T	uc002dhe.2	+	2	261	c.114C>T	c.(112-114)ACC>ACT	p.T38T	ACSM5_uc002dhd.1_Silent_p.T38T	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	38					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						TCGTGGCCACCTGGGAAGCCA	0.577													34	53					0	0	0.000409698	0	0
DNAH3	55567	broad.mit.edu	37	16	20986677	20986677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:20986677C>T	uc010vbe.1	-	51	8137	c.8137G>A	c.(8137-8139)GAA>AAA	p.E2713K	DNAH3_uc010vbd.1_Missense_Mutation_p.E148K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2713	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGGCAGTTTCCTCGGAGGTG	0.488													219	336					0	0	0.000781405	0	0
DNAH3	55567	broad.mit.edu	37	16	21042367	21042367	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:21042367C>A	uc010vbe.1	-	37	5439	c.5439G>T	c.(5437-5439)AAG>AAT	p.K1813N		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1813	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CAATACTTACCTTTTTATTGT	0.338													25	79					4.7796e-09	3.33909e-08	0.000720815	1	0
SCNN1B	6338	broad.mit.edu	37	16	23391948	23391948	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:23391948G>A	uc002dln.2	+	13	1925	c.1749G>A	c.(1747-1749)GAG>GAA	p.E583E		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	583	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AGCTGGTGGAGGCCCACACCA	0.697													229	399					0	0	0.000781405	0	0
ERN2	10595	broad.mit.edu	37	16	23713965	23713965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:23713965G>A	uc002dma.3	-	9	1226	c.1057C>T	c.(1057-1059)CAC>TAC	p.H353Y	ERN2_uc010bxp.2_Missense_Mutation_p.H353Y|ERN2_uc010bxq.1_Missense_Mutation_p.H161Y	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	305	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		ACTCCTGTGTGGACCAGTGCT	0.498													356	563					0	0	0.000781405	0	0
PRKCB	5579	broad.mit.edu	37	16	24104192	24104192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:24104192C>T	uc002dmd.2	+	6	807	c.610C>T	c.(610-612)CCC>TCC	p.P204S	PRKCB_uc002dme.2_Missense_Mutation_p.P204S	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	204	C2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GATTCCCGATCCCAAAAGTGA	0.423													63	99					0	0	0.000781405	0	0
PRKCB	5579	broad.mit.edu	37	16	24196444	24196444	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:24196444C>T	uc002dmd.2	+	14	1743	c.1546C>T	c.(1546-1548)CAG>TAG	p.Q516*	PRKCB_uc002dme.2_Nonsense_Mutation_p.Q516*	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	516	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	AATTGCTTATCAGCCCTATGG	0.433													36	85					0	0	0.000680045	0	0
RBBP6	5930	broad.mit.edu	37	16	24582320	24582320	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:24582320C>T	uc002dmh.2	+	18	4973	c.3933C>T	c.(3931-3933)ATC>ATT	p.I1311I	RBBP6_uc002dmi.2_Silent_p.I1277I|RBBP6_uc010bxr.2_Silent_p.I471I|RBBP6_uc002dmk.2_Silent_p.I1144I	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1311					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AAGATGTTATCATTATGATTC	0.363													138	260					0	0	0.000781405	0	0
TNRC6A	27327	broad.mit.edu	37	16	24831623	24831624	+	Missense_Mutation	DNP	TA	AC	AC			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:24831623_24831624TA>AC	uc002dmm.2	+	22	5358_5359	c.5244_5245TA>AC	c.(5242-5247)GATAAT>GAACAT	p.1748_1749DN>EH	TNRC6A_uc010bxs.2_Missense_Mutation_p.1495_1496DN>EH|TNRC6A_uc002dmn.2_Missense_Mutation_p.1446_1447DN>EH|TNRC6A_uc002dmo.2_Missense_Mutation_p.1387_1388DN>EH|TNRC6A_uc002dmr.2_5'Flank	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1748_1749	Sufficient for interaction with EIF2C2.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		CTACGTGGGATAATTCTCCCCT	0.52													99	179					0	0	6.4e-05	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25263266	25263266	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:25263266A>T	uc002dod.3	-	4	1176	c.769T>A	c.(769-771)TTC>ATC	p.F257I	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.F53I|ZKSCAN2_uc002doe.2_Missense_Mutation_p.F257I	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	257	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		TCCTTCCTGAAATCCCGGTAG	0.463													218	343					0	0	0.000781405	0	0
XPO6	23214	broad.mit.edu	37	16	28146597	28146597	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:28146597G>A	uc002dpa.1	-	10	1884	c.1383C>T	c.(1381-1383)ATC>ATT	p.I461I	XPO6_uc002dpb.1_Silent_p.I447I|XPO6_uc010vcp.1_Silent_p.I461I	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	461					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						ATCTGAACTGGATTCGATTCA	0.478													124	130					0	0	0.000781405	0	0
CCDC101	112869	broad.mit.edu	37	16	28602126	28602126	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:28602126C>A	uc002dqf.2	+	9	820	c.635C>A	c.(634-636)CCG>CAG	p.P212Q	uc010vct.1_Intron	NM_138414	NP_612423	Q96ES7	SGF29_HUMAN	coiled-coil domain containing 101	212	SGF29 C-terminal.				establishment of protein localization to chromatin|histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ada2/Gcn5/Ada3 transcription activator complex|SAGA-type complex	methylated histone residue binding			central_nervous_system(1)	1						CGTGTCATCCCGCTGCCCCAG	0.632													8	354					0.000673444	0.0046179	0.000673444	1	0
EIF3CL	728689	broad.mit.edu	37	16	28734620	28734620	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:28734620C>T	uc010byj.2	+	10	1004	c.915C>T	c.(913-915)GTC>GTT	p.V305V	uc010vct.1_Intron|EIF3CL_uc010byi.2_Silent_p.V304V|EIF3CL_uc002dqs.3_Silent_p.V304V|EIF3C_uc002dqt.3_Silent_p.V304V|EIF3CL_uc010vcy.1_Silent_p.V294V|EIF3C_uc002dqu.3_Silent_p.V304V|EIF3CL_uc002dqv.3_Silent_p.V50V	NM_001099661	NP_001093131	B5ME19	B5ME19_HUMAN	eukaryotic translation initiation factor 3,	305						eukaryotic translation initiation factor 3 complex	translation initiation factor activity				0						GGGAAAGGGTCCGGGGCGGAG	0.532													126	413					0	0	0.000781405	0	0
QPRT	23475	broad.mit.edu	37	16	29708641	29708641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:29708641C>T	uc002dto.2	+	4	881	c.803C>T	c.(802-804)TCC>TTC	p.S268F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|QPRT_uc010vdu.1_RNA	NM_014298	NP_055113	Q15274	NADC_HUMAN	quinolinate phosphoribosyltransferase	268					protein oligomerization|quinolinate catabolic process|water-soluble vitamin metabolic process	cytosol	nicotinate-nucleotide diphosphorylase (carboxylating) activity|protein homodimerization activity				0					Niacin(DB00627)	GACGTCATCTCCATGGGGATG	0.602													209	320					0	0	0.000781405	0	0
MVP	9961	broad.mit.edu	37	16	29841948	29841948	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:29841948C>T	uc002dui.2	+	2	162	c.78C>T	c.(76-78)TCC>TCT	p.S26S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Silent_p.S26S|MVP_uc010vea.1_5'Flank	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	26	MVP 1.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GCAACGTGTCCCGTGTGGAGG	0.592													174	301					0	0	0.000781405	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29885032	29885032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:29885032G>A	uc002duq.3	-	13	2363	c.2123C>T	c.(2122-2124)CCT>CTT	p.P708L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.P638L|SEZ6L2_uc002dur.3_Missense_Mutation_p.P638L|SEZ6L2_uc002dus.3_Missense_Mutation_p.P594L|SEZ6L2_uc010vec.1_Missense_Mutation_p.P708L|SEZ6L2_uc010ved.1_Missense_Mutation_p.P664L	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	708	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AATCTCGCCAGGGTCAGCACA	0.532													204	255					0	0	0.000781405	0	0
DOC2A	8448	broad.mit.edu	37	16	30018571	30018571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:30018571C>T	uc002dvm.2	-	6	677	c.577G>A	c.(577-579)GAG>AAG	p.E193K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Missense_Mutation_p.E193K|DOC2A_uc002dvn.2_Missense_Mutation_p.E193K|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Missense_Mutation_p.E193K|DOC2A_uc002dvp.2_Missense_Mutation_p.E193K|DOC2A_uc002dvq.2_Missense_Mutation_p.E193K	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	193	C2 1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						ACGCGGATCTCCCCAATAAAC	0.622													267	479					0	0	0.000781405	0	0
MAPK3	5595	broad.mit.edu	37	16	30128045	30128045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:30128045C>T	uc002dws.2	-	8	1184	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAPK3_uc002dwr.2_Missense_Mutation_p.E248K|MAPK3_uc002dwv.3_Missense_Mutation_p.E318K|MAPK3_uc002dwt.2_3'UTR|MAPK3_uc002dwu.2_RNA|MAPK3_uc010bzp.2_RNA	NM_002746	NP_002737	P27361	MK03_HUMAN	mitogen-activated protein kinase 3 isoform 1	362					activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|cellular response to mechanical stimulus|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|interleukin-1-mediated signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription initiation from RNA polymerase I promoter	cytosol|nucleoplasm	ATP binding|MAP kinase activity|phosphatase binding				0					Arsenic trioxide(DB01169)|Isoproterenol(DB01064)|Simvastatin(DB00641)|Sulindac(DB00605)	AAGATGAGCTCCTTCAGCCGC	0.637													370	479					0	0	0.000781405	0	0
ITGAL	3683	broad.mit.edu	37	16	30495178	30495178	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:30495178C>T	uc002dyi.3	+	8	929	c.753C>T	c.(751-753)GCC>GCT	p.A251A	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Silent_p.A168A|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	251	VWFA.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGCTGGGGGCCCGGCCAGATG	0.582													361	466					0	0	0.000781405	0	0
SRCAP	10847	broad.mit.edu	37	16	30749203	30749203	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:30749203C>T	uc002dze.1	+	34	8227	c.7842C>T	c.(7840-7842)GGC>GGT	p.G2614G	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.G2409G	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2614	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TGGAGGCTGGCAGCATCCCCA	0.572													284	445					0	0	0.000781405	0	0
SETD1A	9739	broad.mit.edu	37	16	30976750	30976750	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:30976750C>A	uc002ead.1	+	7	2373	c.1687C>A	c.(1687-1689)CGG>AGG	p.R563R		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	563	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						AGGGGCTACCCGGGAGTCTCC	0.657													10	803					0.00136819	0.0093286	0.00136819	1	0
SETD1A	9739	broad.mit.edu	37	16	30995019	30995020	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:30995019_30995020CG>AT	uc002ead.1	+	18	5562_5563	c.4876_4877CG>AT	c.(4876-4878)CGG>ATG	p.R1626M	HSD3B7_uc002eaf.2_5'Flank|HSD3B7_uc010cac.2_5'Flank|HSD3B7_uc002eag.2_5'Flank|HSD3B7_uc002eah.2_5'Flank	NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1626	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CTACCTGTTCCGGGTGGACCAC	0.634													8	503					0	0	6.4e-05	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512													6	221					0	0	0.00116845	0	0
LOC146481	146481	broad.mit.edu	37	16	34712344	34712344	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:34712344G>A	uc002edx.3	-	2		c.1011C>T			LOC146481_uc010vgd.1_RNA					Homo sapiens hypothetical protein LOC146481, mRNA (cDNA clone IMAGE:4639919), partial cds.												0						TTCTTAGCAGGGAAGACATAA	0.567													10	35					0	0	0.000442599	0	0
HEATR3	55027	broad.mit.edu	37	16	50112882	50112882	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:50112882C>A	uc002efw.2	+	7	1156	c.994C>A	c.(994-996)CAT>AAT	p.H332N	HEATR3_uc002efx.2_Missense_Mutation_p.H246N	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	332							binding			ovary(1)|skin(1)	2						AGGAATTTCTCATAAAAGAAG	0.353													79	157					5.68823e-23	3.99174e-22	0.000781405	1	0
NOD2	64127	broad.mit.edu	37	16	50733554	50733554	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:50733554C>T	uc002egm.1	+	2	334	c.229C>T	c.(229-231)CTG>TTG	p.L77L	NOD2_uc010cbj.1_Silent_p.L50L|NOD2_uc010cbk.1_Silent_p.L50L|NOD2_uc002egl.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	77	CARD 1.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				CTTCCACCTCCTGGGCCAGCC	0.632													200	355					0	0	0.000781405	0	0
NOD2	64127	broad.mit.edu	37	16	50765666	50765666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:50765666G>A	uc002egm.1	+	12	3164	c.3059G>A	c.(3058-3060)GGG>GAG	p.G1020E	NOD2_uc010vgq.1_Missense_Mutation_p.G65E	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	1020	LRR 9.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				AGGCTCCGAGGGAACACTTTC	0.483													89	179					0	0	0.000781405	0	0
GPR97	222487	broad.mit.edu	37	16	57702286	57702287	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:57702286_57702287CC>TT	uc002emh.2	+	1	130_131	c.27_28CC>TT	c.(25-30)GCCCTG>GCTTTG	p.9_10AL>AL	GPR97_uc010cdc.2_Silent_p.9_10AL>AL|GPR97_uc010vhv.1_5'UTR|GPR97_uc010cdd.2_RNA	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	9_10					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						GCCTGGGGGCCCTGCTCCTGCT	0.718													62	92					0	0	6.4e-05	0	0
GPR97	222487	broad.mit.edu	37	16	57713216	57713216	+	Missense_Mutation	SNP	C	A	A	rs146307657		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:57713216C>A	uc002emh.2	+	5	723	c.620C>A	c.(619-621)CCG>CAG	p.P207Q	GPR97_uc010vhv.1_Missense_Mutation_p.P87Q|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_5'Flank	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	207	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						CACCAGCGACCGCCCCCTGTG	0.617													7	545					0.000274275	0.00189323	0.000274275	1	0
CDH8	1006	broad.mit.edu	37	16	61851630	61851630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:61851630C>T	uc002eog.1	-	7	1282	c.1030G>A	c.(1030-1032)GAC>AAC	p.D344N	CDH8_uc002eoh.2_Missense_Mutation_p.D113N	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	344	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GTCTCAAAGTCCAGAGGCTGT	0.438													12	20					0	0	0.000978159	0	0
PDP2	57546	broad.mit.edu	37	16	66918344	66918345	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:66918344_66918345CC>AA	uc002eqk.1	+	2	319_320	c.157_158CC>AA	c.(157-159)CCA>AAA	p.P53K		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	53					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		AAACAGTTCCCCATGTGGTGGC	0.455													16	903					0	0	6.4e-05	0	0
CDH16	1014	broad.mit.edu	37	16	66948284	66948284	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:66948284C>T	uc002eql.2	-	7	688	c.615G>A	c.(613-615)AGG>AGA	p.R205R	CDH16_uc010cdy.2_Silent_p.R205R|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	205	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GCTGGTAGGTCCTCTCCAGGG	0.617													128	251					0	0	0.000781405	0	0
CES2	8824	broad.mit.edu	37	16	66969505	66969505	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:66969505C>T	uc002eqr.2	+	1	1159	c.159C>T	c.(157-159)GTC>GTT	p.V53V	CES2_uc002eqq.2_Silent_p.V53V|CES2_uc002eqs.2_5'UTR|FAM96B_uc002eqp.2_5'Flank	NM_003869	NP_003860	O00748	EST2_HUMAN	carboxylesterase 2 isoform 1	Error:Variant_position_missing_in_O00748_after_alignment					catabolic process	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0663)|Epithelial(162;0.166)		AGCAGCGTGTCCGCCGGCAGC	0.672													351	575					0	0	0.000781405	0	0
FHOD1	29109	broad.mit.edu	37	16	67264530	67264530	+	Silent	SNP	C	T	T	rs111846078	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:67264530C>T	uc002esl.2	-	18	2944	c.2832G>A	c.(2830-2832)AGG>AGA	p.R944R	FHOD1_uc002esk.2_Silent_p.R3R|FHOD1_uc010ced.2_Silent_p.R751R	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	944	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		GGTGCACTATCCTTAGCATGG	0.627													310	598					0	0	0.000781405	0	0
SLC9A5	6553	broad.mit.edu	37	16	67288959	67288959	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:67288959C>T	uc002esm.2	+	3	589	c.526C>T	c.(526-528)CTG>TTG	p.L176L	SLC9A5_uc010cee.2_5'UTR|SLC9A5_uc010vji.1_5'UTR	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	176	Helical; (Potential).				regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		GGACTTCCTGCTGTTTGGGAG	0.572													151	258					0	0	0.000781405	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67316524	67316525	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:67316524_67316525CG>AT	uc002eso.3	+	9	3907_3908	c.1372_1373CG>AT	c.(1372-1374)CGG>ATG	p.R458M	PLEKHG4_uc002esp.3_Missense_Mutation_p.R265M|PLEKHG4_uc002esq.3_Missense_Mutation_p.R458M|PLEKHG4_uc010cef.2_Missense_Mutation_p.R458M|PLEKHG4_uc002ess.3_Missense_Mutation_p.R458M|PLEKHG4_uc010ceg.2_Missense_Mutation_p.R377M	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	458					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		ACTGGAGGCCCGGGAAAGCGGA	0.584													9	740					0	0	6.4e-05	0	0
C16orf48	84080	broad.mit.edu	37	16	67699046	67699046	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:67699046C>T	uc002etw.1	-	3	589	c.306G>A	c.(304-306)AAG>AAA	p.K102K	C16orf48_uc002etv.1_5'Flank|C16orf48_uc010cem.1_Silent_p.K102K|C16orf86_uc002etx.1_5'Flank|C16orf86_uc002ety.2_5'Flank|C16orf86_uc002etz.2_5'Flank	NM_032140	NP_115516	Q9H0I2	CP048_HUMAN	hypothetical protein LOC84080	102						microtubule cytoskeleton	protein binding				0		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		TCAGGTTCTCCTTCTCATGGT	0.597													322	593					0	0	0.000781405	0	0
AARS	16	broad.mit.edu	37	16	70292955	70292956	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:70292955_70292956GG>AA	uc002eyn.1	-	14	2029_2030	c.1919_1920CC>TT	c.(1918-1920)GCC>GTT	p.A640V	AARS_uc010vlu.1_Missense_Mutation_p.A470V	NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	640					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	TGGCTCCCTTGGCAGTAAAGTC	0.545													298	541					0	0	6.4e-05	0	0
COG4	25839	broad.mit.edu	37	16	70543248	70543248	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:70543248G>A	uc002ezc.2	-	7	899	c.888C>T	c.(886-888)ACC>ACT	p.T296T	COG4_uc002ezb.2_5'UTR|COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Silent_p.T296T|COG4_uc002eze.2_5'UTR	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	292					Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				GCCCATAATAGGTCTCCACTA	0.463													135	178					0	0	0.000781405	0	0
AP1G1	164	broad.mit.edu	37	16	71772996	71772996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:71772996G>A	uc010cgg.2	-	21	2431	c.2117C>T	c.(2116-2118)TCC>TTC	p.S706F	AP1G1_uc002fba.2_Missense_Mutation_p.S709F|AP1G1_uc002fbb.2_Missense_Mutation_p.S729F|AP1G1_uc002faz.2_Missense_Mutation_p.S123F	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	706	GAE.				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				TGCTGTGATGGAGGGGATGCC	0.398													173	302					0	0	0.000781405	0	0
ZFHX3	463	broad.mit.edu	37	16	72993478	72993478	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:72993478G>A	uc002fck.2	-	2	1240	c.567C>T	c.(565-567)CCC>CCT	p.P189P	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	189					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCGGGTACACGGGTGCAGCAC	0.617													325	510					0	0	0.000781405	0	0
PSMD7	5713	broad.mit.edu	37	16	74330842	74330842	+	Silent	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:74330842G>C	uc002fcq.2	+	1	162	c.30G>C	c.(28-30)GTG>GTC	p.V10V	PSMD7_uc010vmr.1_5'UTR	NM_002811	NP_002802	P51665	PSD7_HUMAN	proteasome 26S non-ATPase subunit 7	10	MPN.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding				0						AGAAGGTGGTGGTCCACCCCC	0.682													137	231					0	0	0.000781405	0	0
CLEC18B	497190	broad.mit.edu	37	16	74447494	74447494	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:74447494G>A	uc002fct.2	-	4	737	c.537C>T	c.(535-537)GTC>GTT	p.V179V	CLEC18B_uc002fcu.2_Silent_p.V179V|CLEC18B_uc010vmu.1_Silent_p.V99V|CLEC18B_uc010vmw.1_Silent_p.V179V|CLEC18B_uc010vmv.1_5'Flank	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	179	SCP.					extracellular region	sugar binding				0						AGTAGGCACAGACAAAGGCTT	0.612													7	803					0	0	0.001512	0	0
CHST6	4166	broad.mit.edu	37	16	75512732	75512732	+	Missense_Mutation	SNP	G	A	A	rs144301922		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:75512732G>A	uc002fef.2	-	3	1175	c.995C>T	c.(994-996)GCC>GTC	p.A332V	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.A332V	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	332	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						ATGGCGCCAGGCCTGGGAGAC	0.642													273	395					0	0	0.000781405	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76461449	76461450	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:76461449_76461450CC>TA	uc002feu.1	+	6	876_877	c.491_492CC>TA	c.(490-492)CCC>CTA	p.P164L	CNTNAP4_uc002fev.1_Missense_Mutation_p.P76L|CNTNAP4_uc010chb.1_Missense_Mutation_p.P139L|CNTNAP4_uc002fex.1_Missense_Mutation_p.P167L|CNTNAP4_uc002few.2_Missense_Mutation_p.P139L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	164	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GAATGGAACCCCAAGGGCAGAA	0.406													17	23					0	0	6.4e-05	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76486463	76486463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:76486463C>T	uc002feu.1	+	10	1515	c.1130C>T	c.(1129-1131)TCC>TTC	p.S377F	CNTNAP4_uc002fev.1_Missense_Mutation_p.S241F|CNTNAP4_uc010chb.1_Missense_Mutation_p.S304F|CNTNAP4_uc002fex.1_Missense_Mutation_p.S380F|CNTNAP4_uc002few.2_Missense_Mutation_p.S352F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	377	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TTTCTGAGCTCCAGGAGTTAT	0.413													99	152					0	0	0.000781405	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80583408	80583408	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:80583408A>G	uc002ffo.2	+	5	227	c.107A>G	c.(106-108)AAC>AGC	p.N36S	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	36					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						ACCTTGGACAACTCAACAACT	0.358													43	71					0	0	0.000589545	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181055	81181055	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:81181055C>T	uc002fgh.1	-	30	5036	c.5036G>A	c.(5035-5037)TGG>TAG	p.W1679*	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1679	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CACTGAGTCCCAGCCCAAGGC	0.547													181	316					0	0	0.000781405	0	0
LRRC50	123872	broad.mit.edu	37	16	84209740	84209740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:84209740G>A	uc002fhl.3	+	11	2081	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	LRRC50_uc010vnw.1_Missense_Mutation_p.E398K	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	634					axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						GAGGGACTTGGAAATCCGAAA	0.517									Kartagener_syndrome				109	136					0	0	0.000781405	0	0
ATP2C2	9914	broad.mit.edu	37	16	84444322	84444322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:84444322G>A	uc002fhx.2	+	6	555	c.466G>A	c.(466-468)GAG>AAG	p.E156K	ATP2C2_uc010chj.2_Missense_Mutation_p.E156K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E173K|ATP2C2_uc002fhz.2_Intron	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	156	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GTACAGGTCGGAGAAATCTCT	0.542													107	166					0	0	0.000781405	0	0
ATP2C2	9914	broad.mit.edu	37	16	84474529	84474529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:84474529G>A	uc002fhx.2	+	14	1365	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	ATP2C2_uc010chj.2_Missense_Mutation_p.E426K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E443K|ATP2C2_uc002fhz.2_Missense_Mutation_p.E275K	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	426	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AGTCATTAAGGAATTTTCCAA	0.498													84	188					0	0	0.000781405	0	0
KIAA0182	23199	broad.mit.edu	37	16	85690882	85690882	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:85690882G>A	uc002fix.2	+	8	1387	c.1313_splice	c.e8-1	p.E438_splice	KIAA0182_uc002fiw.2_Splice_Site_p.E334_splice|KIAA0182_uc002fiy.2_Splice_Site_p.E365_splice	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1								protein binding			large_intestine(3)|ovary(1)|skin(1)	5						TCCCCCCACAGAGAAGCTGAA	0.642													176	335					0	0	0.000781405	0	0
SPATA2L	124044	broad.mit.edu	37	16	89763814	89763814	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:89763814G>A	uc002foj.2	-	3	1268	c.1203C>T	c.(1201-1203)GCC>GCT	p.A401A	SPATA2L_uc002fok.2_Intron	NM_152339	NP_689552	Q8IUW3	SPA2L_HUMAN	spermatogenesis associated 2-like	401											0		Lung NSC(15;0.00043)|all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0272)		AGCGCCGCTGGGCGTCGCCAA	0.697													102	158					0	0	0.000781405	0	0
GEMIN4	50628	broad.mit.edu	37	17	649222	649222	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:649222G>A	uc002frs.1	-	2	2180	c.2061C>T	c.(2059-2061)TAC>TAT	p.Y687Y		NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	687					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TCTGGAGCCAGTATTCCTCTC	0.532													143	66					0	0	0.000781405	0	0
PRPF8	10594	broad.mit.edu	37	17	1563247	1563247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:1563247C>T	uc002fte.2	-	31	4948	c.4834G>A	c.(4834-4836)GAG>AAG	p.E1612K		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1612						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TGGATTGTCTCCTTTTGTACT	0.428													137	87					0	0	0.000781405	0	0
SGSM2	9905	broad.mit.edu	37	17	2266792	2266792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:2266792G>A	uc002fun.3	+	7	881	c.706G>A	c.(706-708)GAG>AAG	p.E236K	SGSM2_uc002fum.3_Missense_Mutation_p.E236K|SGSM2_uc010vqw.1_Missense_Mutation_p.E236K	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	236						intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		CAGCGCGTCGGAGGACAGGCT	0.652													101	55					0	0	0.000781405	0	0
KIAA0664	23277	broad.mit.edu	37	17	2601309	2601309	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:2601309G>A	uc002fuy.1	-	10	1814	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	KIAA0664_uc002fux.1_Silent_p.F508F|KIAA0664_uc010ckc.1_5'Flank	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	576							binding			breast(2)	2						GCACGGGCAGGAAGTTGAGGT	0.692													51	36					0	0	0.000781405	0	0
ARRB2	409	broad.mit.edu	37	17	4621956	4621957	+	Nonsense_Mutation	DNP	TC	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:4621956_4621957TC>AT	uc002fyj.2	+	10	984_985	c.756_757TC>AT	c.(754-759)TGTCCT>TGATCT	p.252_253CP>*S	ARRB2_uc002fyk.2_Nonsense_Mutation_p.237_238CP>*S|ARRB2_uc002fyl.2_Nonsense_Mutation_p.252_253CP>*S|ARRB2_uc010vsg.1_Nonsense_Mutation_p.273_274CP>*S|ARRB2_uc002fym.2_Nonsense_Mutation_p.237_238CP>*S|ARRB2_uc002fyn.2_Nonsense_Mutation_p.60_61CP>*S|ARRB2_uc010ckq.2_Nonsense_Mutation_p.60_61CP>*S|ARRB2_uc002fyo.2_Nonsense_Mutation_p.60_61CP>*S	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	252_253	Interaction with TRAF6.				cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						AGTACAAGTGTCCTGTGGCTCA	0.559													465	198					0	0	6.4e-05	0	0
CAMTA2	23125	broad.mit.edu	37	17	4883016	4883016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:4883016G>A	uc002gah.1	-	9	1709	c.1601C>T	c.(1600-1602)ACC>ATC	p.T534I	CAMTA2_uc010cku.1_Missense_Mutation_p.T557I|CAMTA2_uc002gag.1_Missense_Mutation_p.T533I|CAMTA2_uc002gai.1_Missense_Mutation_p.T536I|CAMTA2_uc010ckv.1_Missense_Mutation_p.T181I|CAMTA2_uc010vsu.1_Missense_Mutation_p.T347I	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	534					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						GTCTGTGATGGTGCTAAGAGC	0.532													374	242					0	0	0.000781405	0	0
DHX33	56919	broad.mit.edu	37	17	5347542	5347542	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:5347542T>C	uc002gca.2	-	12	2109	c.2107A>G	c.(2107-2109)AGA>GGA	p.R703G	DHX33_uc002gbz.2_Missense_Mutation_p.R474G|DHX33_uc002gcb.2_Missense_Mutation_p.R530G|DHX33_uc010clf.2_Missense_Mutation_p.R479G	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	703						nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						CTGGCGGTTCTCAGCTTCCTC	0.577													3	153					0	0	6.4e-05	0	0
FBXO39	162517	broad.mit.edu	37	17	6683895	6683895	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:6683895C>T	uc010vtg.1	+	2	828	c.708C>T	c.(706-708)ATC>ATT	p.I236I		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	236										ovary(1)|skin(1)	2						ACAACTGTATCTCCGACGAGC	0.507													266	125					0	0	0.000781405	0	0
TP53	7157	broad.mit.edu	37	17	7576897	7576897	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:7576897G>A	uc002gim.2	-	9	1143	c.949C>T	c.(949-951)CAG>TAG	p.Q317*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.Q317*|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Nonsense_Mutation_p.Q185*|TP53_uc010cng.1_Nonsense_Mutation_p.Q185*|TP53_uc002gii.1_Nonsense_Mutation_p.Q185*|TP53_uc010cnh.1_Nonsense_Mutation_p.Q317*|TP53_uc010cni.1_Nonsense_Mutation_p.Q317*|TP53_uc002gij.2_Nonsense_Mutation_p.Q317*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	317	Bipartite nuclear localization signal.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.		Q -> H (in a kidney cancer with no family history; germline mutation and in a sporadic cancer; somatic mutation).|Q -> P (in a sporadic cancer; somatic mutation).|Q -> K (in sporadic cancers; somatic mutation).|Q -> L (in a sporadic cancer; somatic mutation).|Q -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Q317*(19)|p.0?(7)|p.Q317K(3)|p.Q317R(2)|p.S315fs*22(1)|p.?(1)|p.S314fs*25(1)|p.L308fs*15(1)|p.Q317P(1)|p.Q317fs*28(1)|p.Q317fs*45(1)|p.Q317fs*19(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTCTTTGGCTGGGGAGAGGAG	0.473		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			210	115					0	0	0.000781405	0	0
GUCY2D	3000	broad.mit.edu	37	17	7910458	7910458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:7910458G>A	uc002gjt.2	+	5	1533	c.1459G>A	c.(1459-1461)GTG>ATG	p.V487M		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	487	Helical; (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GGCCCATTATGTGAGGTGAGT	0.557													355	208					0	0	0.000781405	0	0
PER1	5187	broad.mit.edu	37	17	8049307	8049307	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:8049307G>A	uc002gkd.2	-	17	2425	c.2187C>T	c.(2185-2187)GTC>GTT	p.V729V	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Silent_p.V713V	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	729	CSNK1E binding domain (By similarity).				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CTCCCACATGGACGATGGTGG	0.637			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					290	185					0	0	0.000781405	0	0
KRBA2	124751	broad.mit.edu	37	17	8272565	8272565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:8272565C>T	uc002glf.1	-	2	1372	c.1366G>A	c.(1366-1368)GAA>AAA	p.E456K	KRBA2_uc002glg.1_Missense_Mutation_p.E373K	NM_213597	NP_998762	Q6ZNG9	KRBA2_HUMAN	KRAB-A domain containing 2	456	Potential.				DNA integration|regulation of transcription, DNA-dependent	intracellular	DNA binding				0						TCAGCCCTTTCTTCCTGCCTG	0.488													367	188					0	0	0.000781405	0	0
KRBA2	124751	broad.mit.edu	37	17	8273312	8273312	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:8273312C>A	uc002glf.1	-	2	625	c.619G>T	c.(619-621)GGT>TGT	p.G207C	KRBA2_uc002glg.1_Missense_Mutation_p.G124C	NM_213597	NP_998762	Q6ZNG9	KRBA2_HUMAN	KRAB-A domain containing 2	207					DNA integration|regulation of transcription, DNA-dependent	intracellular	DNA binding				0						GTCCGCCCACCATGTCCAATA	0.418													10	649					0.00136819	0.0093286	0.00136819	1	0
MYH8	4626	broad.mit.edu	37	17	10318681	10318681	+	Silent	SNP	G	A	A	rs140722284		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:10318681G>A	uc002gmm.2	-	8	764	c.669C>T	c.(667-669)ATC>ATT	p.I223I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	223	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGGCGCTGATGATTTGATCTT	0.502									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				54	28					0	0	0.000781405	0	0
MYH4	4622	broad.mit.edu	37	17	10369888	10369888	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:10369888T>C	uc002gmn.2	-	3	286	c.175A>G	c.(175-177)AAG>GAG	p.K59E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	59	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCTGTCACCTTCCCCCCTTCC	0.463													5	418					0	0	0.000157383	0	0
MYH1	4619	broad.mit.edu	37	17	10405001	10405001	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:10405001C>T	uc002gmo.2	-	26	3352	c.3258G>A	c.(3256-3258)AAG>AAA	p.K1086K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1086	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CAAACTCTTTCCTATTAGAAA	0.363													72	33					0	0	0.000781405	0	0
DNAH9	1770	broad.mit.edu	37	17	11573027	11573027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:11573027G>A	uc002gne.2	+	17	3337	c.3269G>A	c.(3268-3270)CGA>CAA	p.R1090Q	DNAH9_uc010coo.2_Missense_Mutation_p.R384Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1090	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ATTGATATTCGACCCTTTAAG	0.443													97	90					0	0	0.000781405	0	0
MYOCD	93649	broad.mit.edu	37	17	12639528	12639528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:12639528G>A	uc002gnn.2	+	6	765	c.466G>A	c.(466-468)GAC>AAC	p.D156N	MYOCD_uc002gno.2_Missense_Mutation_p.D156N|MYOCD_uc002gnp.1_Missense_Mutation_p.D60N	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	156	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CTTTGAAGAGGACAGCAGCAG	0.537													133	121					0	0	0.000781405	0	0
MYOCD	93649	broad.mit.edu	37	17	12661487	12661487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:12661487C>T	uc002gnn.2	+	11	2443	c.2144C>T	c.(2143-2145)TCA>TTA	p.S715L	MYOCD_uc002gno.2_Missense_Mutation_p.S763L|MYOCD_uc002gnp.1_Missense_Mutation_p.S667L|MYOCD_uc002gnq.2_Intron	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	715					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		TCAGCAATTTCAGAGGTAACA	0.408													32	22					0	0	0.000409698	0	0
UBB	7314	broad.mit.edu	37	17	16285329	16285329	+	Silent	SNP	T	C	C	rs16962978		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:16285329T>C	uc002gpx.2	+	2	246	c.108T>C	c.(106-108)ATT>ATC	p.I36I	UBB_uc010vwe.1_Silent_p.I36I	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	36	Ubiquitin-like 1.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AGGAAGGCATTCCCCCCGACC	0.542													4	368					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	17	21730916	21730916	+	Missense_Mutation	SNP	G	T	T	rs111245273	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:21730916G>T	uc002gyy.3	+	2	343	c.218G>T	c.(217-219)CGG>CTG	p.R73L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCGGAGAGGTGGT	0.552													14	427					9.31168e-06	6.48492e-05	0.000151284	1	0
FLJ36000	284124	broad.mit.edu	37	17	21904114	21904114	+	RNA	SNP	A	G	G	rs75848292		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:21904114A>G	uc002gza.2	+	1		c.53A>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						tccggctgccaggagtcgcaa	0													6	256					0	0	0.000157383	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904125	21904125	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:21904125G>A	uc002gza.2	+	1		c.64G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ggagtcgcaaggggccgagca	0													9	310					0	0	0.000978159	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904133	21904133	+	RNA	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:21904133G>C	uc002gza.2	+	1		c.72G>C				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						aaggggccgagcaggatgagg	0													4	364					0	0	0.00116845	0	0
KSR1	8844	broad.mit.edu	37	17	25924425	25924425	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:25924425C>T	uc010crg.2	+	10	1465	c.1020C>T	c.(1018-1020)CCC>CCT	p.P340P	KSR1_uc002gzj.1_RNA|KSR1_uc002gzm.2_Silent_p.P141P	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	475					Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CCCCCAACCCCTCACCTGGCC	0.617													60	120					0	0	0.000781405	0	0
SUPT6H	6830	broad.mit.edu	37	17	27002448	27002448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:27002448G>A	uc002hby.2	+	6	658	c.568G>A	c.(568-570)GGA>AGA	p.G190R	SUPT6H_uc010crt.2_Missense_Mutation_p.G190R	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	190	Asp/Glu-rich.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GGATGATGATGGACAGCCTCT	0.498													111	174					0	0	0.000781405	0	0
SEZ6	124925	broad.mit.edu	37	17	27306818	27306818	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:27306818C>T	uc002hdp.2	-	3	932	c.738G>A	c.(736-738)TGG>TGA	p.W246*	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Nonsense_Mutation_p.W246*|SEZ6_uc002hdq.1_Nonsense_Mutation_p.W121*|SEZ6_uc010crz.1_Nonsense_Mutation_p.W246*	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	246	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			CTGAGAAATTCCAGCTACAAG	0.512													56	70					0	0	0.000781405	0	0
SSH2	85464	broad.mit.edu	37	17	27975269	27975269	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:27975269C>T	uc002heo.1	-	13	1239	c.1239G>A	c.(1237-1239)TGG>TGA	p.W413*	SSH2_uc010wbh.1_Nonsense_Mutation_p.W440*|SSH2_uc002hep.1_Nonsense_Mutation_p.W413*	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	413	Tyrosine-protein phosphatase.				actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						GGTCCAGATTCCAGCCATATT	0.483													57	115					0	0	0.000781405	0	0
SLC6A4	6532	broad.mit.edu	37	17	28537579	28537579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:28537579G>A	uc002hey.3	-	11	1947	c.1403C>T	c.(1402-1404)GCC>GTC	p.A468V	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	468	Helical; Name=9; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	GATGACCACGGCGAGCACGAA	0.602													184	229					0	0	0.000781405	0	0
SLC6A4	6532	broad.mit.edu	37	17	28548879	28548879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:28548879G>A	uc002hey.3	-	3	642	c.98C>T	c.(97-99)ACC>ATC	p.T33I		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	33	Cytoplasmic (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	GTCCCCTGGGGTGGGAACAAC	0.532													364	555					0	0	0.000781405	0	0
NF1	4763	broad.mit.edu	37	17	29685550	29685550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:29685550C>T	uc002hgg.2	+	55	8356	c.8023C>T	c.(8023-8025)CCA>TCA	p.P2675S	NF1_uc002hgh.2_Missense_Mutation_p.P2654S|NF1_uc010cso.2_Missense_Mutation_p.P863S|NF1_uc010wbt.1_Missense_Mutation_p.P153S|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2675					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GTGCCAAGATCCAAATTTGTT	0.348			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			23	59					0	0	0.000229342	0	0
AMAC1	146861	broad.mit.edu	37	17	33520323	33520323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:33520323C>T	uc002hjd.2	-	1	1090	c.1004G>A	c.(1003-1005)AGG>AAG	p.R335K		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	335						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CTCCTCCACCCTCCCTGTCCT	0.557													6	584					0	0	0.000274275	0	0
AMAC1	146861	broad.mit.edu	37	17	33520539	33520539	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:33520539G>T	uc002hjd.2	-	1	874	c.788C>A	c.(787-789)GCC>GAC	p.A263D		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	263	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		GGAGACCAAGGCGAGGATCCC	0.627													7	885					6.40141e-05	0.000444029	0.000978159	1	0
RASL10B	91608	broad.mit.edu	37	17	34067441	34067441	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:34067441C>A	uc002hju.2	+	3	596	c.230C>A	c.(229-231)ACC>AAC	p.T77N		NM_033315	NP_201572	Q96S79	RSLAB_HUMAN	RAS-like, family 10, member B precursor	77	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			lung(2)|breast(2)	4				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGGGCAGACACCTGCTGCAGG	0.597													265	452					2.26023e-93	1.59835e-92	0.000781405	1	0
GAS2L2	246176	broad.mit.edu	37	17	34072434	34072434	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:34072434C>T	uc002hjv.1	-	6	2110	c.2082G>A	c.(2080-2082)GGG>GGA	p.G694G		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	694					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTCCCAACTTCCCTTTGAGGC	0.627													360	585					0	0	0.000781405	0	0
C17orf66	256957	broad.mit.edu	37	17	34183756	34183756	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:34183756C>T	uc002hke.1	-	12	1355	c.1206G>A	c.(1204-1206)ACG>ACA	p.T402T	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Silent_p.T362T|C17orf66_uc010wcm.1_Silent_p.T368T	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	402							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		AGTTCATCATCGTAGGCTTCA	0.488													13	22					0	0	0.000151284	0	0
ACACA	31	broad.mit.edu	37	17	35563735	35563735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:35563735G>A	uc002hnm.2	-	32	3990	c.3799C>T	c.(3799-3801)CCT>TCT	p.P1267S	ACACA_uc002hnk.2_Missense_Mutation_p.P1189S|ACACA_uc002hnl.2_Missense_Mutation_p.P1209S|ACACA_uc002hnn.2_Missense_Mutation_p.P1267S|ACACA_uc002hno.2_Missense_Mutation_p.P1304S|ACACA_uc010cuy.2_5'Flank	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1267					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CCTGCCTCAGGGAATGTGGGA	0.463													39	55					0	0	0.000509022	0	0
DDX52	11056	broad.mit.edu	37	17	36003412	36003412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:36003412C>T	uc002hoi.1	-	1	76	c.38G>A	c.(37-39)GGG>GAG	p.G13E	DDX52_uc002hoh.1_5'UTR|DDX52_uc002hoj.1_5'Flank	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	13						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				GAATTTGGCCCCCGCGCCGAG	0.627													42	157					0	0	0.000589545	0	0
MLLT6	4302	broad.mit.edu	37	17	36876005	36876005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:36876005C>T	uc002hqi.3	+	14	2025	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F	MLLT6_uc002hqj.2_Missense_Mutation_p.S106F|MLLT6_uc002hqk.3_Missense_Mutation_p.S2F	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	671					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					GGCCGCAGGTCCCCCATCAGC	0.682			T	MLL	AL								126	215					0	0	0.000781405	0	0
CDK12	51755	broad.mit.edu	37	17	37627546	37627547	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:37627546_37627547CG>AT	uc010cvv.2	+	2	2047_2048	c.1461_1462CG>AT	c.(1459-1464)TCCGAG>TCATAG	p.E488*	CDK12_uc010wef.1_Nonsense_Mutation_p.E487*|CDK12_uc002hrw.3_Nonsense_Mutation_p.E488*	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	488					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						ATGAGAACTCCGAGAAGCATCT	0.391										TCGA Ovarian(9;0.13)			7	681					0	0	6.4e-05	0	0
CASC3	22794	broad.mit.edu	37	17	38325687	38325687	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:38325687C>T	uc010cwt.1	+	12	2371	c.2076C>T	c.(2074-2076)CCC>CCT	p.P692P	CASC3_uc002hue.2_Silent_p.P692P	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	692	Poly-Pro.|Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						CCATCAAGCCCCCTCCACCTG	0.562													232	313					0	0	0.000781405	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38350012	38350012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:38350012C>T	uc010cwu.1	+	15	1833	c.1343C>T	c.(1342-1344)TCC>TTC	p.S448F	RAPGEFL1_uc010wfd.1_Missense_Mutation_p.S384F	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	654	Ras-GEF.				G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTCGAGCTCTCCTACAAGCTG	0.567													202	311					0	0	0.000781405	0	0
TNS4	84951	broad.mit.edu	37	17	38636963	38636963	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:38636963T>G	uc010cxb.2	-	9	1894	c.1730A>C	c.(1729-1731)AAG>ACG	p.K577T	TNS4_uc002huu.3_Missense_Mutation_p.E46D	NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	577	Phosphatase tensin-type.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CGCAGATTTCTTCTGGCAGGA	0.552													92	176					0	0	0.000781405	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240729	39240729	+	Missense_Mutation	SNP	A	G	G	rs148949542	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:39240729A>G	uc010wfn.1	+	1	271	c.271A>G	c.(271-273)ATG>GTG	p.M91V		NM_033061	NP_149050			keratin associated protein 4-7												0						cagctgctgtatgtccagctg	0.189													5	314					0	0	0.00127121	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274214	39274214	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:39274214G>C	uc002hvz.2	-	1	393	c.354C>G	c.(352-354)AGC>AGG	p.S118R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	118	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].|19.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			gtctgcagcagctggacacac	0.129													5	430					0	0	0.000409698	0	0
KRTAP4-1	85285	broad.mit.edu	37	17	39340692	39340692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:39340692G>A	uc002hwe.3	-	2	399	c.358C>T	c.(358-360)CCC>TCC	p.P120S		NM_033060	NP_149049	Q9BYQ7	KRA41_HUMAN	keratin associated protein 4-1	139	17.|18 X 5 AA repeats of C-C-[GRQC]-[SPT]- [VSTL].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			CAGCAGCTGGGGCGGCAGCAA	0.537													311	586					0	0	0.000781405	0	0
KRT15	3866	broad.mit.edu	37	17	39671830	39671830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:39671830C>T	uc002hwy.2	-	6	1332	c.1141G>A	c.(1141-1143)GAG>AAG	p.E381K	KRT15_uc002hwz.2_Missense_Mutation_p.E283K|KRT15_uc002hxa.2_Missense_Mutation_p.E216K|KRT15_uc002hxb.1_Missense_Mutation_p.E216K	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	381	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				GCCTCCATCTCGCATCGGAGC	0.602													204	319					0	0	0.000781405	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40842928	40842928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:40842928C>T	uc002iay.2	+	13	2243	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	676	Extracellular (Potential).|Fibrinogen C-terminal.				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		ATCGAGTTCTCCTGCTACAAT	0.587													317	594					0	0	0.000781405	0	0
G6PC	2538	broad.mit.edu	37	17	41063225	41063225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:41063225G>A	uc002icb.1	+	5	935	c.856G>A	c.(856-858)GGG>AGG	p.G286R	G6PC_uc010whf.1_3'UTR	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	286	Cytoplasmic (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GAGCTGCAAGGGGAAACTCAG	0.577									Glycogen_Storage_Disease_type_Ia				71	120					0	0	0.000781405	0	0
MPP2	4355	broad.mit.edu	37	17	41955296	41955297	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:41955296_41955297CC>TT	uc010wip.1	-	13	1729_1730	c.1672_1673GG>AA	c.(1672-1674)GGG>AAG	p.G558K	MPP2_uc002ien.1_Missense_Mutation_p.G530K|MPP2_uc010wim.1_Missense_Mutation_p.G502K|MPP2_uc002ieo.1_Missense_Mutation_p.G513K|MPP2_uc010win.1_Missense_Mutation_p.G374K|MPP2_uc010wio.1_Missense_Mutation_p.G502K	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	537	Guanylate kinase-like.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		AAAGTAGTGCCCGTAGCCCCGC	0.629													145	273					0	0	6.4e-05	0	0
IMP5	162540	broad.mit.edu	37	17	43924320	43924320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:43924320C>T	uc010wka.1	+	1	2048	c.2048C>T	c.(2047-2049)CCC>CTC	p.P683L	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	683	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		ACCCAGGCTCCCTTGTGAACT	0.567													158	302					0	0	0.000781405	0	0
C17orf57	124989	broad.mit.edu	37	17	45517911	45517911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:45517911G>A	uc002iln.2	+	25	3164	c.2753G>A	c.(2752-2754)AGG>AAG	p.R918K		NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	918							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						GATCTAGAAAGGCAAGCAGTG	0.303													80	136					0	0	0.000781405	0	0
NFE2L1	4779	broad.mit.edu	37	17	46135824	46135824	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:46135824C>T	uc002imz.3	+	6	1791	c.1140C>T	c.(1138-1140)CCC>CCT	p.P380P	NFE2L1_uc002ina.3_Silent_p.P350P|NFE2L1_uc002inb.3_Silent_p.P350P|NFE2L1_uc010wle.1_Silent_p.P192P|NFE2L1_uc010wlf.1_Silent_p.P224P	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	380					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						TCTTCAGCCCCGAGGTGGAAA	0.607													314	489					0	0	0.000781405	0	0
HOXB6	3216	broad.mit.edu	37	17	46673891	46673892	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:46673891_46673892CC>AT	uc002ins.1	-	4	883_884	c.558_559GG>AT	c.(556-561)ACGGAG>ACATAG	p.E187*	HOXB5_uc002inr.2_5'Flank|HOXB6_uc010dbh.1_Nonsense_Mutation_p.E187*|HOXB6_uc002int.1_3'UTR	NM_018952	NP_061825	P17509	HXB6_HUMAN	homeobox B6	187	Homeobox.				anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ATCTGCCTCTCCGTCAGGCACA	0.579													347	581					0	0	6.4e-05	0	0
EPN3	55040	broad.mit.edu	37	17	48616568	48616568	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:48616568T>C	uc002ira.3	+	5	1218	c.783T>C	c.(781-783)GGT>GGC	p.G261G	EPN3_uc010wms.1_Silent_p.G289G|EPN3_uc010wmt.1_RNA|EPN3_uc010wmu.1_Silent_p.G234G	NM_017957	NP_060427	Q9H201	EPN3_HUMAN	epsin 3	261						clathrin-coated vesicle|nucleus|perinuclear region of cytoplasm	lipid binding			ovary(1)	1	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;2.88e-09)			CCTGGCAGGGTGATGGCTCCC	0.597													7	776					0	0	0.000151284	0	0
KIF2B	84643	broad.mit.edu	37	17	51902363	51902363	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:51902363A>G	uc002iua.2	+	1	2125	c.1969A>G	c.(1969-1971)AAG>GAG	p.K657E	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	657	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity	p.K657N(1)		ovary(5)|skin(3)	8						CGAGATCCAAAAGAAACTGAA	0.458													99	178					0	0	0.000781405	0	0
TMEM100	55273	broad.mit.edu	37	17	53798339	53798339	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:53798339G>A	uc002iuj.3	-	2	404	c.93C>T	c.(91-93)ATC>ATT	p.I31I	TMEM100_uc002iuk.3_Silent_p.I31I	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	31						integral to membrane					0						GGACTGTGGTGATCACAACTT	0.537													26	66					0	0	0.00106085	0	0
OR4D1	26689	broad.mit.edu	37	17	56232598	56232598	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:56232598C>T	uc010wno.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AATTCCTGTTCCTTCTGTTCC	0.468													373	597					0	0	0.000781405	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386214	56386214	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:56386214G>A	uc002ivx.3	-	22	5290	c.4419C>T	c.(4417-4419)TCC>TCT	p.S1473S	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Silent_p.S1413S|BZRAP1_uc010wnt.1_Silent_p.S1473S	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1473						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGCACCTCCGGGAAGGGCCCA	0.662													208	262					0	0	0.000781405	0	0
TEX14	56155	broad.mit.edu	37	17	56646619	56646619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:56646619C>T	uc010dcz.1	-	27	4076	c.3958G>A	c.(3958-3960)GAA>AAA	p.E1320K	TEX14_uc002iwr.1_Missense_Mutation_p.E1314K|TEX14_uc002iws.1_Missense_Mutation_p.E1274K|TEX14_uc010dda.1_Missense_Mutation_p.E1054K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1320						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAGAAGGCTTCTACTAGTTTT	0.413													40	61					0	0	0.000374591	0	0
RPS6KB1	6198	broad.mit.edu	37	17	58022834	58022834	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:58022834T>C	uc002ixy.2	+	14	1398	c.1295T>C	c.(1294-1296)ATC>ACC	p.I432T	RPS6KB1_uc010ddj.1_Missense_Mutation_p.I432T|RPS6KB1_uc010wom.1_Missense_Mutation_p.I379T|RPS6KB1_uc010won.1_Missense_Mutation_p.I409T|RPS6KB1_uc010woo.1_Missense_Mutation_p.I367T|RPS6KB1_uc002ixz.2_RNA	NM_003161	NP_003152	P23443	KS6B1_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	432	Autoinhibitory domain.				apoptosis|G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|negative regulation of apoptosis|phosphatidylinositol-mediated signaling|positive regulation of mitotic cell cycle|positive regulation of translational initiation|TOR signaling cascade	cell junction|cytoplasm|cytosol|mitochondrial outer membrane|nucleus|nucleus|synapse|synaptosome	ATP binding|protein binding|protein kinase activity			large_intestine(1)	1	all_cancers(5;1.63e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.57e-12)|all cancers(12;6.41e-11)			GAACCAAAAATCCGATCACCT	0.383													21	26					0	0	0.000375601	0	0
TBX2	6909	broad.mit.edu	37	17	59485551	59485551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:59485551G>A	uc010wox.1	+	7	2104	c.1823G>A	c.(1822-1824)CGG>CAG	p.R608Q	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Missense_Mutation_p.R454Q	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	608					cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						TCCCTCTCCCGGAGCCCCTTC	0.433													120	174					0	0	0.000781405	0	0
INTS2	57508	broad.mit.edu	37	17	59958411	59958411	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:59958411C>T	uc002izn.2	-	17	2311	c.2235G>A	c.(2233-2235)CTG>CTA	p.L745L	INTS2_uc002izm.2_Silent_p.L737L	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	745					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						CATTATTAGTCAGGAGCATTC	0.403													64	97					0	0	0.000781405	0	0
TANC2	26115	broad.mit.edu	37	17	61428720	61428720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:61428720G>A	uc002jal.3	+	11	1718	c.1695G>A	c.(1693-1695)ATG>ATA	p.M565I	TANC2_uc010wpe.1_Missense_Mutation_p.M475I	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	565							binding			ovary(2)	2						TGAGTAAAATGATCGGAAAGT	0.343													48	73					0	0	0.000781405	0	0
ACE	1636	broad.mit.edu	37	17	61559001	61559001	+	Silent	SNP	C	G	G	rs3730026		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:61559001C>G	uc002jau.1	+	7	1042	c.1020C>G	c.(1018-1020)CCC>CCG	p.P340P	ACE_uc010wpi.1_Silent_p.P340P|ACE_uc010ddu.1_Silent_p.P157P	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	340	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CCATGCCTCCCGAGTTCTGGG	0.637													4	542					0	0	0.00116845	0	0
KCNH6	81033	broad.mit.edu	37	17	61619602	61619602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:61619602G>A	uc002jay.2	+	9	2035	c.1955G>A	c.(1954-1956)GGA>GAA	p.G652E	KCNH6_uc010wpl.1_Missense_Mutation_p.G529E|KCNH6_uc010wpm.1_Missense_Mutation_p.G652E|KCNH6_uc002jaz.1_Missense_Mutation_p.G599E	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	652	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TGGCTGGCAGGAAAGAATGAC	0.587													180	349					0	0	0.000781405	0	0
FTSJ3	117246	broad.mit.edu	37	17	61902519	61902519	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:61902519G>A	uc002jbz.2	-	7	678	c.600C>T	c.(598-600)TTC>TTT	p.F200F	FTSJ3_uc002jca.2_Silent_p.F200F|PSMC5_uc002jcb.2_5'Flank|PSMC5_uc010ddy.2_5'Flank|PSMC5_uc010ddz.2_5'Flank|PSMC5_uc002jcc.2_5'Flank|PSMC5_uc002jcd.2_5'Flank	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	200					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						CAGGGGCCAGGAATCCTAAAA	0.423													177	292					0	0	0.000781405	0	0
SMARCD2	6603	broad.mit.edu	37	17	61914857	61914857	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:61914857G>A	uc010deb.1	-	2	662	c.345C>T	c.(343-345)TTC>TTT	p.F115F	SMARCD2_uc010wpt.1_Silent_p.F67F|SMARCD2_uc010dea.1_Silent_p.F40F|SMARCD2_uc010dec.1_Silent_p.F94F	NM_001098426	NP_001091896	Q92925	SMRD2_HUMAN	SWI/SNF-related matrix-associated	115	Pro-rich.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex	protein binding|transcription coactivator activity				0						GGCGTTTTCGGAATGGATCCA	0.637													314	546					0	0	0.000781405	0	0
ERN1	2081	broad.mit.edu	37	17	62131659	62131659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:62131659C>T	uc002jdz.2	-	15	2017	c.1904G>A	c.(1903-1905)CGG>CAG	p.R635Q		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	635	Cytoplasmic (Potential).|Protein kinase.		R -> W (in a gastric adenocarcinoma sample; somatic mutation).		activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity	p.R635W(1)		central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CTGGAATTGCCGGTCCTTCTC	0.448													50	96					0	0	0.000781405	0	0
ERN1	2081	broad.mit.edu	37	17	62144126	62144126	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:62144126G>A	uc002jdz.2	-	8	860	c.747C>T	c.(745-747)ACC>ACT	p.T249T		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	249	Lumenal (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						GATAGCGCAGGGTCTCCACAG	0.572													31	70					0	0	0.000279167	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62856307	62856307	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:62856307G>A	uc002jey.2	-	11	4488	c.3957C>T	c.(3955-3957)CCC>CCT	p.P1319P	LRRC37A3_uc010wqg.1_Silent_p.P437P|LRRC37A3_uc002jex.1_Silent_p.P296P|LRRC37A3_uc010wqf.1_Silent_p.P357P|LRRC37A3_uc010dek.1_Silent_p.P325P	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1319	Extracellular (Potential).					integral to membrane					0						TTTTGACCTTGGGTGTTCTGT	0.428													304	544					0	0	0.000781405	0	0
CACNG5	27091	broad.mit.edu	37	17	64880637	64880637	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:64880637C>T	uc010wqi.1	+	5	666	c.429C>T	c.(427-429)CTC>CTT	p.L143L	CACNG5_uc002jfr.2_Silent_p.L143L|CACNG5_uc010wqj.1_Silent_p.L143L	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	143	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			AACCAGGCCTCTCTCTCGTGG	0.567													58	89					0	0	0.000781405	0	0
CACNG4	27092	broad.mit.edu	37	17	65021002	65021002	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:65021002C>G	uc002jft.1	+	3	346	c.331C>G	c.(331-333)CCC>GCC	p.P111A		NM_014405	NP_055220	Q9UBN1	CCG4_HUMAN	voltage-dependent calcium channel gamma-4	111	Helical; (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane	voltage-gated calcium channel activity			central_nervous_system(1)	1	all_cancers(12;9.86e-11)		BRCA - Breast invasive adenocarcinoma(6;1.35e-07)			CAGCGTCTTCCCCATCCTCAG	0.642													234	546					0	0	0.000781405	0	0
CACNG1	786	broad.mit.edu	37	17	65041002	65041003	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:65041002_65041003GG>AA	uc002jfu.2	+	1	297_298	c.226_227GG>AA	c.(226-228)GGG>AAG	p.G76K		NM_000727	NP_000718	Q06432	CCG1_HUMAN	voltage-dependent calcium channel gamma-1	76					muscle contraction	voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(12;1.04e-10)|Breast(2;1.45e-16)|all_epithelial(3;4.81e-12)				Amlodipine(DB00381)|Diltiazem(DB00343)|Ibutilide(DB00308)|Lercanidipine(DB00528)|Magnesium Sulfate(DB00653)|Nimodipine(DB00393)|Nitrendipine(DB01054)|Verapamil(DB00661)	CACCCTGCCCGGGGGTAACGTA	0.644													58	129					0	0	6.4e-05	0	0
BPTF	2186	broad.mit.edu	37	17	65908943	65908943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:65908943C>T	uc002jgf.2	+	11	5004	c.4943C>T	c.(4942-4944)TCT>TTT	p.S1648F	BPTF_uc002jge.2_Missense_Mutation_p.S1774F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1774	Thr-rich.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GACATCATCTCTGTAAAGGAG	0.512													19	40					0	0	0.00121646	0	0
KPNA2	3838	broad.mit.edu	37	17	66042701	66042701	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:66042701T>G	uc002jgk.2	+	11	1711	c.1579T>G	c.(1579-1581)TTT>GTT	p.F527V	KPNA2_uc002jgl.2_Missense_Mutation_p.F527V	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	527					DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			TCCTGGGACCTTTAACTTTTA	0.363													5	589					0	0	0.000274275	0	0
ABCA9	10350	broad.mit.edu	37	17	66972067	66972067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:66972067C>T	uc002jhu.2	-	39	5007	c.4864G>A	c.(4864-4866)GAA>AAA	p.E1622K	ABCA9_uc010dez.2_Missense_Mutation_p.E1584K	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1622					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TAAGGCTCTTCCTGCAGGAGG	0.423													9	21					0	0	0.000673444	0	0
SDK2	54549	broad.mit.edu	37	17	71395335	71395335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:71395335G>A	uc010dfm.2	-	22	3065	c.3065C>T	c.(3064-3066)TCC>TTC	p.S1022F	SDK2_uc002jjt.3_Missense_Mutation_p.S181F|SDK2_uc010dfn.2_Missense_Mutation_p.S701F	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1022	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GCGGGAGATGGAGGTTTTCCC	0.637													158	271					0	0	0.000781405	0	0
CD300LD	100131439	broad.mit.edu	37	17	72584797	72584797	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:72584797G>A	uc002jkz.2	-	2	261	c.232C>T	c.(232-234)CGA>TGA	p.R78*	C17orf77_uc002jla.1_Intron	NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	78	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity				0						ATGGAAACTCGATTCTTCTTT	0.448													118	216					0	0	0.000781405	0	0
CDR2L	30850	broad.mit.edu	37	17	72998256	72998256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:72998256G>A	uc002jml.3	+	4	851	c.439G>A	c.(439-441)GAG>AAG	p.E147K		NM_014603	NP_055418	Q86X02	CDR2L_HUMAN	cerebellar degeneration-related protein 2-like	147											0	all_lung(278;0.226)					AGTGCTCCGGGAGAAGCGGGA	0.642													61	85					0	0	0.000781405	0	0
LLGL2	3993	broad.mit.edu	37	17	73559867	73559867	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:73559867C>T	uc002joh.2	+	9	1015	c.861C>T	c.(859-861)CTC>CTT	p.L287L	LLGL2_uc002jog.1_Silent_p.L287L|LLGL2_uc010dgf.1_Silent_p.L287L|LLGL2_uc002joi.2_Silent_p.L287L|LLGL2_uc010dgg.1_Silent_p.L287L|LLGL2_uc002joj.2_Silent_p.L276L|LLGL2_uc010wsd.1_5'UTR|uc002jok.2_5'Flank	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	287	WD 6.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CCAGAATCCTCTGGCTGACCA	0.542													306	495					0	0	0.000781405	0	0
ITGB4	3691	broad.mit.edu	37	17	73723294	73723294	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:73723294C>T	uc002jpg.2	+	3	286	c.99C>T	c.(97-99)GCC>GCT	p.A33A	ITGB4_uc002jph.2_Silent_p.A33A|ITGB4_uc010dgo.2_Silent_p.A33A|ITGB4_uc002jpi.3_Silent_p.A33A|ITGB4_uc010dgp.1_Silent_p.A33A|ITGB4_uc002jpj.2_Silent_p.A33A	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	33	PSI.|Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCAAGAAGGCCCCAGTGAAGA	0.607													47	113					0	0	0.000781405	0	0
UNC13D	201294	broad.mit.edu	37	17	73836021	73836021	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:73836021C>T	uc002jpp.2	-	12	1334	c.954G>A	c.(952-954)GCG>GCA	p.A318A	UNC13D_uc010wsk.1_Silent_p.A318A|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_Silent_p.A115A	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	318	Interaction with RAB27A.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGGTGCTTCCCGCCTGAGGGG	0.667									Familial_Hemophagocytic_Lymphohistiocytosis				200	299					0	0	0.000781405	0	0
UNC13D	201294	broad.mit.edu	37	17	73838692	73838692	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:73838692A>G	uc002jpp.2	-	6	771	c.391T>C	c.(391-393)TTC>CTC	p.F131L	UNC13D_uc010wsk.1_Missense_Mutation_p.F131L|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_5'UTR	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	131	C2 1.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGGTCGCTGAACCCTGTGGAG	0.711									Familial_Hemophagocytic_Lymphohistiocytosis				194	329					0	0	0.000781405	0	0
DNAH17	8632	broad.mit.edu	37	17	76499039	76499039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:76499039C>T	uc010wtu.1	-	6	1063	c.886G>A	c.(886-888)GAA>AAA	p.E296K	uc002jvt.1_RNA					full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCTGGGATTTCGTGCCGGAGG	0.647													134	186					0	0	0.000781405	0	0
CBX8	57332	broad.mit.edu	37	17	77770084	77770084	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:77770084G>A	uc002jxd.1	-	3	237	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_020649	NP_065700	Q9HC52	CBX8_HUMAN	chromobox homolog 8	48	Chromo.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex	methylated histone residue binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GAGCATCCAGGATGTTTTCCT	0.547													340	603					0	0	0.000781405	0	0
CCDC40	55036	broad.mit.edu	37	17	78058622	78058622	+	Silent	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:78058622A>C	uc010dht.2	+	13	2097	c.2070A>C	c.(2068-2070)GCA>GCC	p.A690A	CCDC40_uc002jxm.3_Silent_p.A473A|CCDC40_uc002jxn.3_Silent_p.A86A	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	690	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GGCTGGACGCACACCAGAAGA	0.532													114	208					0	0	0.000781405	0	0
FASN	2194	broad.mit.edu	37	17	80053275	80053275	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:80053275G>A	uc002kdu.2	-	3	318	c.201C>T	c.(199-201)GTC>GTT	p.V67V		NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	67	Beta-ketoacyl synthase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GCTTGGGGTGGACTCCGAAGA	0.617													233	362					0	0	0.000781405	0	0
COLEC12	81035	broad.mit.edu	37	18	346625	346625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:346625C>T	uc002kkm.2	-	5	1212	c.997G>A	c.(997-999)GAG>AAG	p.E333K		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	333	Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				AAGCGTTCCTCCAGTTGGTTG	0.468													94	110					0	0	0.000781405	0	0
SMCHD1	23347	broad.mit.edu	37	18	2718181	2718181	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:2718181T>C	uc002klm.3	+	18	2475	c.2286T>C	c.(2284-2286)ATT>ATC	p.I762I	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	762					chromosome organization		ATP binding				0						AAGAGATTATTTCGCATATTA	0.303													57	66					0	0	0.000781405	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891764	2891764	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:2891764C>T	uc002kln.2	+	4	1798	c.1639C>T	c.(1639-1641)CAA>TAA	p.Q547*		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	547					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GGACAAAGTTCAAGTTGTTGA	0.552													172	312					0	0	0.000781405	0	0
MYOM1	8736	broad.mit.edu	37	18	3116369	3116369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:3116369C>T	uc002klp.2	-	21	3597	c.3263G>A	c.(3262-3264)CGA>CAA	p.R1088Q	MYOM1_uc002klq.2_Missense_Mutation_p.R992Q	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1088	Fibronectin type-III 5.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						ATTGAGCCCTCGCCACTGGTC	0.522													24	36					0	0	0.000878237	0	0
MYOM1	8736	broad.mit.edu	37	18	3215125	3215125	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:3215125T>G	uc002klp.2	-	2	431	c.97A>C	c.(97-99)AAG>CAG	p.K33Q	MYOM1_uc002klq.2_Missense_Mutation_p.K33Q	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	33						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GAGCGTTTCTTCTCCCGCTGG	0.642													98	285					0	0	0.000781405	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887912	9887913	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:9887912_9887913GG>AA	uc002koi.3	+	2	1885_1886	c.1436_1437GG>AA	c.(1435-1437)TGG>TAA	p.W479*	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Nonsense_Mutation_p.W412*	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	479	Thioredoxin.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						TCGGCCACGTGGTGTGGGCCCT	0.589													28	60					0	0	6.4e-05	0	0
CEP192	55125	broad.mit.edu	37	18	13049187	13049187	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:13049187C>T	uc010xac.1	+	16	2477	c.2397C>T	c.(2395-2397)AAC>AAT	p.N799N	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Silent_p.N324N|CEP192_uc002kru.2_RNA|CEP192_uc002krs.1_Silent_p.N540N	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	799										ovary(4)|pancreas(1)	5						CATTGGAAAACTTTTCAAGGG	0.343													26	38					0	0	0.000720815	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478185	14478185	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:14478185C>T	uc010xai.1	-	3		c.1379G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TAGACCCATCCTTGCTCTGTG	0.453													148	202					0	0	0.000781405	0	0
LOC644669	644669	broad.mit.edu	37	18	15323347	15323347	+	RNA	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:15323347T>C	uc002ktd.1	-	3		c.112A>G				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						CCAATAAAAGTGGTGTGTGGC	0.303													5	26					0	0	8.12818e-05	0	0
C18orf8	29919	broad.mit.edu	37	18	21099071	21099071	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:21099071A>T	uc010xax.1	+	9	903	c.782A>T	c.(781-783)AAT>ATT	p.N261I	C18orf8_uc010xau.1_Missense_Mutation_p.N104I|C18orf8_uc010xav.1_Missense_Mutation_p.N213I|C18orf8_uc010xaw.1_Missense_Mutation_p.N104I|C18orf8_uc002kul.2_RNA	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	261										ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TTGAAGTTAAATAGGACGGGA	0.418													79	124					0	0	0.000781405	0	0
TAF4B	6875	broad.mit.edu	37	18	23862009	23862009	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:23862009G>A	uc002kvu.3	+	6	1446	c.957G>A	c.(955-957)CTG>CTA	p.L319L	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Silent_p.L319L	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	319	TAFH.				transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			AGCCTCACCTGGTTCCTTTTC	0.343													37	65					0	0	0.00111076	0	0
DSC3	1825	broad.mit.edu	37	18	28605778	28605778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:28605778C>T	uc002kwj.3	-	5	733	c.578G>A	c.(577-579)GGA>GAA	p.G193E	DSC3_uc002kwi.3_Missense_Mutation_p.G193E	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	193	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			AAATAGATTTCCAGTGTCTCT	0.333													23	51					0	0	0.000229342	0	0
DSC2	1824	broad.mit.edu	37	18	28659912	28659912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:28659912C>T	uc002kwl.3	-	11	2018	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	DSC2_uc002kwk.3_Missense_Mutation_p.E522K	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	522	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CCTGTATTTTCATCAATGGTG	0.328													21	49					0	0	0.000586117	0	0
DSC2	1824	broad.mit.edu	37	18	28666641	28666641	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:28666641C>T	uc002kwl.3	-	7	1294	c.840G>A	c.(838-840)CTG>CTA	p.L280L	DSC2_uc002kwk.3_Silent_p.L280L	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	280	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TGGAGTACTTCAGGCGTGTGT	0.473													45	75					0	0	0.000589545	0	0
DSC1	1823	broad.mit.edu	37	18	28711788	28711788	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:28711788G>A	uc002kwn.2	-	15	2518	c.2256C>T	c.(2254-2256)CTC>CTT	p.L752L	DSC1_uc002kwm.2_Silent_p.L752L|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	752	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TCTGCATGGGGAGTCTAATAT	0.343													22	37					0	0	0.000229342	0	0
DSG4	147409	broad.mit.edu	37	18	28989502	28989502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:28989502G>A	uc002kwq.2	+	13	2156	c.2021G>A	c.(2020-2022)GGA>GAA	p.G674E	DSG4_uc002kwr.2_Missense_Mutation_p.G674E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	674	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CCTGAGGGCGGAGAAGGAGTG	0.542													282	507					0	0	0.000781405	0	0
MCART2	147407	broad.mit.edu	37	18	29340041	29340041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:29340041C>T	uc002kxa.2	-	1	803	c.584G>A	c.(583-585)GGT>GAT	p.G195D		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	195	Helical; Name=4; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			CTTAATGGGACCTCGAAGGCC	0.473													263	451					0	0	0.000781405	0	0
MCART2	147407	broad.mit.edu	37	18	29340355	29340355	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:29340355C>T	uc002kxa.2	-	1	489	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	90	Solcar 1.|Helical; Name=2; (Potential).				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			TAGTTGTCTTCTGCATCAATG	0.488													289	466					0	0	0.000781405	0	0
MEP1B	4225	broad.mit.edu	37	18	29795084	29795084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:29795084G>A	uc002kxj.3	+	12	1666	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	540	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						TCTAAAGTGGGAACAGTGGCT	0.408													86	186					0	0	0.000781405	0	0
MEP1B	4225	broad.mit.edu	37	18	29797810	29797810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:29797810C>T	uc002kxj.3	+	14	2020	c.1973C>T	c.(1972-1974)TCA>TTA	p.S658L		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	658	Helical; (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						ATTGCTGTTTCATCTACTGTT	0.483													51	92					0	0	0.000781405	0	0
ASXL3	80816	broad.mit.edu	37	18	31320151	31320151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:31320151G>A	uc010dmg.1	+	11	2838	c.2783G>A	c.(2782-2784)GGG>GAG	p.G928E	ASXL3_uc002kxq.2_Missense_Mutation_p.G635E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	928					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CATAAGCAAGGGAGTACACAG	0.403													67	106					0	0	0.000781405	0	0
NOL4	8715	broad.mit.edu	37	18	31803000	31803001	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:31803000_31803001CC>TG	uc010dmi.2	-	1	446_447	c.217_218GG>CA	c.(217-219)GGA>CAA	p.G73Q	NOL4_uc002kxr.3_5'Flank|NOL4_uc010xbt.1_5'Flank|NOL4_uc010dmh.2_5'Flank|NOL4_uc010xbu.1_Missense_Mutation_p.G73Q|NOL4_uc002kxt.3_Missense_Mutation_p.G73Q	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	73						nucleolus	RNA binding			ovary(3)	3						GCCGCCGCCTCCCCCGCGGACC	0.624													195	294					0	0	6.4e-05	0	0
NOL4	8715	broad.mit.edu	37	18	31803068	31803068	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:31803068G>C	uc010dmi.2	-	1	379	c.150C>G	c.(148-150)AAC>AAG	p.N50K	NOL4_uc002kxr.3_5'Flank|NOL4_uc010xbt.1_5'Flank|NOL4_uc010dmh.2_5'Flank|NOL4_uc010xbu.1_Missense_Mutation_p.N50K|NOL4_uc002kxt.3_Missense_Mutation_p.N50K	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	50						nucleolus	RNA binding			ovary(3)	3						TAAATTTGGCGTTGTCCGTGG	0.597													237	471					0	0	0.000781405	0	0
CELF4	56853	broad.mit.edu	37	18	34901826	34901826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:34901826C>T	uc002lae.2	-	3	784	c.388G>A	c.(388-390)GTG>ATG	p.V130M	CELF4_uc010dnd.1_Missense_Mutation_p.V130M|CELF4_uc002lag.2_Missense_Mutation_p.V130M|CELF4_uc002laf.2_Missense_Mutation_p.V126M|CELF4_uc002lai.2_Missense_Mutation_p.V126M	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	130	RRM 1.|Sufficient for RNA-binding and MSE- dependent splicing activity.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						GCAGGCTTCACCTGGATCGGC	0.572											OREG0024927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	108	131					0	0	0.000781405	0	0
SLC14A2	8170	broad.mit.edu	37	18	43252881	43252881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:43252881C>T	uc010dnj.2	+	18	2567	c.2246C>T	c.(2245-2247)CCC>CTC	p.P749L	SLC14A2_uc002lbe.2_Missense_Mutation_p.P749L	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	749						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AGAGCCATCCCCGTTGGAATT	0.488													42	97					0	0	0.000781405	0	0
SLC14A1	6563	broad.mit.edu	37	18	43328385	43328385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:43328385G>A	uc010xcn.1	+	10	1310	c.991G>A	c.(991-993)GCT>ACT	p.A331T	SLC14A1_uc010dnk.2_Missense_Mutation_p.A387T|SLC14A1_uc002lbf.3_Missense_Mutation_p.A331T|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.A226T|SLC14A1_uc002lbh.3_Missense_Mutation_p.A223T|SLC14A1_uc002lbi.3_Missense_Mutation_p.A199T|SLC14A1_uc002lbj.3_Missense_Mutation_p.A387T|SLC14A1_uc002lbk.3_Missense_Mutation_p.A331T	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	331						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						AAACTTTATGGCTGAGGTGAG	0.443													49	68					0	0	0.000781405	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555104	44555104	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:44555104C>T	uc010xdb.1	-	1	1346	c.1110G>A	c.(1108-1110)TGG>TGA	p.W370*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	370	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GATCGGGCGTCCACCCTTCCA	0.587													26	494					0	0	0.000319135	0	0
MYO5B	4645	broad.mit.edu	37	18	47429091	47429091	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:47429091C>G	uc002leb.2	-	21	2972	c.2684G>C	c.(2683-2685)CGG>CCG	p.R895P	MYO5B_uc002lea.2_Missense_Mutation_p.R36P	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	895	Arg-rich.|IQ 6.|IQ 5.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CTTGAGCATCCGGAAGGCACA	0.622													51	90					0	0	0.000781405	0	0
MYO5B	4645	broad.mit.edu	37	18	47432962	47432962	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:47432962G>A	uc002leb.2	-	19	2529	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	747	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CTGCTCGAAAGAAGATCTTGG	0.557													59	89					0	0	0.000781405	0	0
CCDC11	220136	broad.mit.edu	37	18	47777856	47777856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:47777856G>A	uc002lee.2	-	4	863	c.772C>T	c.(772-774)CTT>TTT	p.L258F		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	258	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		CCCACCACAAGGCGTGCCTCC	0.542													149	205					0	0	0.000781405	0	0
DCC	1630	broad.mit.edu	37	18	50450106	50450106	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:50450106C>T	uc002lfe.1	+	4	1314	c.727C>T	c.(727-729)CTG>TTG	p.L243L	DCC_uc010xdr.1_Silent_p.L91L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	243	Extracellular (Potential).|Ig-like C2-type 3.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GCTGTATTTTCTGCAAAGACC	0.378													8	11					0	0	0.000442599	0	0
TXNL1	9352	broad.mit.edu	37	18	54278309	54278309	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:54278309T>G	uc002lgg.2	-	7	1004	c.755A>C	c.(754-756)CAA>CCA	p.Q252P	TXNL1_uc010xdz.1_RNA|TXNL1_uc002lgh.2_RNA|TXNL1_uc002lgi.2_Missense_Mutation_p.Q252P|TXNL1_uc002lgj.1_Missense_Mutation_p.Q252P	NM_004786	NP_004777	O43396	TXNL1_HUMAN	thioredoxin-like 1	252	PITH.				cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	cytoplasm	electron carrier activity|protein disulfide oxidoreductase activity				0				READ - Rectum adenocarcinoma(59;0.193)|Colorectal(16;0.211)		CTCTTCACCTTGATTCGACTG	0.289													15	18					0	0	0.000308642	0	0
WDR7	23335	broad.mit.edu	37	18	54547228	54547228	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:54547228A>G	uc002lgk.1	+	21	3569	c.3358A>G	c.(3358-3360)AGA>GGA	p.R1120G	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.R1087G	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	1120										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TTACGAGGAAAGACGGAAGCA	0.378													3	223					0	0	6.4e-05	0	0
SERPINB12	89777	broad.mit.edu	37	18	61225604	61225604	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:61225604T>A	uc010xen.1	+	2	188	c.188T>A	c.(187-189)TTT>TAT	p.F63Y	SERPINB12_uc010xeo.1_Missense_Mutation_p.F63Y	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	63					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						TTCAACGAATTTTCCCAGAAT	0.423													38	64					0	0	0.000319135	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471555	61471555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:61471555C>T	uc002ljl.2	+	8	925	c.829C>T	c.(829-831)CCT>TCT	p.P277S	SERPINB7_uc002ljm.2_Missense_Mutation_p.P277S|SERPINB7_uc010xet.1_Missense_Mutation_p.P260S|SERPINB7_uc010dqg.2_Missense_Mutation_p.P277S	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	277					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GGTATTTTTTCCTCAGTTCAA	0.353													14	33					0	0	0.000219431	0	0
CDH7	1005	broad.mit.edu	37	18	63548088	63548088	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:63548088C>G	uc002ljz.2	+	12	2641	c.2316C>G	c.(2314-2316)CTC>CTG	p.L772L	CDH7_uc002lkb.2_Silent_p.L772L	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	772	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TTAAACGACTCGCGGACATGT	0.413													94	188					0	0	0.000781405	0	0
CD226	10666	broad.mit.edu	37	18	67614037	67614037	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:67614037G>A	uc010dqo.2	-	2	762	c.315C>T	c.(313-315)TAC>TAT	p.Y105Y	CD226_uc002lkm.3_Silent_p.Y105Y	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	105	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				AGCAGGAATAGTAGCCAACAT	0.418													22	59					0	0	0.000375601	0	0
RTTN	25914	broad.mit.edu	37	18	67733128	67733128	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:67733128G>A	uc002lkp.2	-	35	4752	c.4684C>T	c.(4684-4686)CAG>TAG	p.Q1562*	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Nonsense_Mutation_p.Q650*	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1562							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				ACAAGTGGCTGAAATTCAGTA	0.393													130	215					0	0	0.000781405	0	0
FAM69C	125704	broad.mit.edu	37	18	72109245	72109245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:72109245G>A	uc002llk.2	-	3	992	c.983C>T	c.(982-984)TCA>TTA	p.S328L		NM_001044369	NP_001037834	Q0P6D2	FA69C_HUMAN	hypothetical protein LOC125704	328	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0						ATCACATCTTGAAAAACAGTC	0.473													244	428					0	0	0.000781405	0	0
FAM69C	125704	broad.mit.edu	37	18	72109314	72109314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:72109314G>A	uc002llk.2	-	3	923	c.914C>T	c.(913-915)CCT>CTT	p.P305L		NM_001044369	NP_001037834	Q0P6D2	FA69C_HUMAN	hypothetical protein LOC125704	305	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0						CCTCATTTTAGGTTCAAAAAA	0.453													161	242					0	0	0.000781405	0	0
ZNF236	7776	broad.mit.edu	37	18	74631830	74631830	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:74631830T>C	uc002lmi.2	+	20	3565	c.3367T>C	c.(3367-3369)TTA>CTA	p.L1123L	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1123					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GACAGCCCAGTTAGCCAAGAT	0.552													93	158					0	0	0.000781405	0	0
SALL3	27164	broad.mit.edu	37	18	76753692	76753692	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:76753692C>T	uc002lmt.2	+	2	1701	c.1701C>T	c.(1699-1701)TCC>TCT	p.S567S	SALL3_uc010dra.2_Silent_p.S174S	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CCTCCTTGTCCCCAGGCCTCA	0.746													35	80					0	0	0.000814825	0	0
ADNP2	22850	broad.mit.edu	37	18	77894694	77894694	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:77894694C>T	uc002lnw.2	+	4	1853	c.1398C>T	c.(1396-1398)ATC>ATT	p.I466I		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	466					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CAGGGGTTATCCCTGGGCAAA	0.612													166	270					0	0	0.000781405	0	0
PARD6G	84552	broad.mit.edu	37	18	77917846	77917847	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:77917846_77917847GG>AA	uc002lny.2	-	3	1104_1105	c.938_939CC>TT	c.(937-939)CCC>CTT	p.P313L	LOC100130522_uc002lnx.2_Intron|LOC100130522_uc010xfn.1_Intron|LOC100130522_uc010xfo.1_Intron	NM_032510	NP_115899	Q9BYG4	PAR6G_HUMAN	PAR-6 gamma protein	313					cell cycle|cell division|tight junction assembly	cytosol|tight junction	protein binding				0		all_cancers(4;5.63e-22)|all_epithelial(4;5.86e-15)|all_lung(4;1.32e-05)|Ovarian(4;1.33e-05)|Lung NSC(4;2.77e-05)|Esophageal squamous(42;0.0157)|all_hematologic(56;0.13)|Melanoma(33;0.144)		Epithelial(2;1.48e-13)|all cancers(1;5.77e-13)|OV - Ovarian serous cystadenocarcinoma(15;2.74e-10)|BRCA - Breast invasive adenocarcinoma(31;0.00166)|STAD - Stomach adenocarcinoma(84;0.18)|Lung(128;0.23)		CCGGGGTCTGGGGGGGACGTGC	0.748													39	50					0	0	6.4e-05	0	0
GZMM	3004	broad.mit.edu	37	19	549174	549174	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:549174G>C	uc002low.1	+	4	646	c.601G>C	c.(601-603)GCT>CCT	p.A201P		NM_005317	NP_005308	P51124	GRAM_HUMAN	granzyme M precursor	201	Peptidase S1.				apoptosis|cytolysis|innate immune response|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAAGGACCAGGCTCCCTGCAA	0.711													47	71					0	0	0.000781405	0	0
BSG	682	broad.mit.edu	37	19	577991	577991	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:577991C>T	uc002loz.2	+	2	383	c.285C>T	c.(283-285)ATC>ATT	p.I95I	BSG_uc002loy.2_Intron|BSG_uc002lpa.2_Intron|BSG_uc002lpb.2_Intron|BSG_uc010drr.2_Intron|BSG_uc002lpc.2_5'Flank	NM_001728	NP_001719	P35613	BASI_HUMAN	basigin isoform 1 precursor	95					blood coagulation|cell surface receptor linked signaling pathway|leukocyte migration|pyruvate metabolic process	Golgi membrane|integral to membrane|melanosome	lactate transmembrane transporter activity|mannose binding|protein binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCATCTCCATCGACACGCTCG	0.692													131	181					0	0	0.000781405	0	0
BSG	682	broad.mit.edu	37	19	578036	578036	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:578036C>T	uc002loz.2	+	2	428	c.330C>T	c.(328-330)GCC>GCT	p.A110A	BSG_uc002loy.2_Intron|BSG_uc002lpa.2_Intron|BSG_uc002lpb.2_Intron|BSG_uc010drr.2_Intron|BSG_uc002lpc.2_5'Flank	NM_001728	NP_001719	P35613	BASI_HUMAN	basigin isoform 1 precursor	110					blood coagulation|cell surface receptor linked signaling pathway|leukocyte migration|pyruvate metabolic process	Golgi membrane|integral to membrane|melanosome	lactate transmembrane transporter activity|mannose binding|protein binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTGCCGGGCCAGCAACGACC	0.682													83	142					0	0	0.000781405	0	0
PALM	5064	broad.mit.edu	37	19	731131	731131	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:731131C>T	uc002lpm.1	+	5	500	c.306C>T	c.(304-306)GAC>GAT	p.D102D	PALM_uc010xft.1_Silent_p.D102D|PALM_uc002lpn.1_Silent_p.D102D|PALM_uc010xfu.1_5'UTR	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	102					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		AGCGTGGAGACTCCGCCCCAG	0.672													55	105					0	0	0.000781405	0	0
ABCA7	10347	broad.mit.edu	37	19	1047168	1047168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:1047168C>T	uc002lqw.3	+	15	2089	c.1858C>T	c.(1858-1860)CTC>TTC	p.L620F	ABCA7_uc010dsb.1_Missense_Mutation_p.L482F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	620					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGAGACATCCTCCCCTACAG	0.677													65	104					0	0	0.000781405	0	0
AP3D1	8943	broad.mit.edu	37	19	2115595	2115596	+	Missense_Mutation	DNP	CG	AT	AT	rs140741000	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:2115595_2115596CG>AT	uc002luz.2	-	19	2313_2314	c.2090_2091CG>AT	c.(2089-2091)CCG>CAT	p.P697H	AP3D1_uc002luy.2_Missense_Mutation_p.P606H|AP3D1_uc002lva.2_Missense_Mutation_p.P697H	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	697					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCCACGCCCGGGGTGTCCTG	0.629													11	506					0	0	6.4e-05	0	0
C19orf35	374872	broad.mit.edu	37	19	2278609	2278610	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:2278609_2278610CC>TT	uc002lvn.2	-	3	685_686	c.585_586GG>AA	c.(583-588)GAGGAC>GAAAAC	p.D196N	SPPL2B_uc010dsw.1_Intron	NM_198532	NP_940934	Q6ZS72	CS035_HUMAN	hypothetical protein LOC374872	196										pancreas(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCAGGCGTCCTCGTGCGCGC	0.668													177	325					0	0	6.4e-05	0	0
ZNF77	58492	broad.mit.edu	37	19	2936681	2936681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:2936681G>A	uc002lws.3	-	3	283	c.152C>T	c.(151-153)ACC>ATC	p.T51I		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	51	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		TGATCCACTGGTTCTAACATA	0.353													174	268					0	0	0.000781405	0	0
SHD	56961	broad.mit.edu	37	19	4283124	4283124	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:4283124C>T	uc002lzw.2	+	3	1940	c.477C>T	c.(475-477)CCC>CCT	p.P159P	SHD_uc010dtu.2_Silent_p.P159P	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	159											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGATGGACCCCCTTCTGGGC	0.582													166	344					0	0	0.000781405	0	0
SHD	56961	broad.mit.edu	37	19	4288335	4288335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:4288335C>T	uc002lzw.2	+	5	2275	c.812C>T	c.(811-813)CCC>CTC	p.P271L	SHD_uc010dtu.2_Intron	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	271	SH2.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGACCAACCCCCAGGACTGC	0.577													104	123					0	0	0.000781405	0	0
FEM1A	55527	broad.mit.edu	37	19	4793084	4793084	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:4793084C>T	uc002mbf.2	+	1	1357	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	406	TPR 2.				regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CGGGCAATTTCGAGCGCTGCA	0.622													316	520					0	0	0.000781405	0	0
PTPRS	5802	broad.mit.edu	37	19	5231452	5231452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:5231452G>A	uc002mbv.2	-	14	2258	c.2024C>T	c.(2023-2025)CCC>CTC	p.P675L	PTPRS_uc002mbu.1_Intron|PTPRS_uc010xin.1_Intron|PTPRS_uc002mbw.2_Missense_Mutation_p.P662L|PTPRS_uc002mbx.2_Intron|PTPRS_uc002mby.2_Intron	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	675	Extracellular (Potential).|Fibronectin type-III 4.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GGTGGTCGGGGGGATGCCGTT	0.672													142	268					0	0	0.000781405	0	0
TMEM146	257062	broad.mit.edu	37	19	5757867	5757867	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:5757867A>G	uc002mda.2	+	14	1353	c.1292A>G	c.(1291-1293)AAC>AGC	p.N431S	TMEM146_uc010duj.1_Missense_Mutation_p.N89S	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	431	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATGGTGAGCAACCCCCACTCC	0.607													52	101					0	0	0.000781405	0	0
FUT3	2525	broad.mit.edu	37	19	5843807	5843807	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:5843807G>A	uc002mdk.2	-	2	1141	c.1044C>T	c.(1042-1044)TCC>TCT	p.S348S	FUT3_uc002mdm.2_Silent_p.S348S|FUT3_uc002mdj.2_Silent_p.S348S|FUT3_uc002mdl.2_Silent_p.S348S	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	348	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						TCTGGTACCTGGATTCCTGCT	0.637													272	373					0	0	0.000781405	0	0
ACSBG2	81616	broad.mit.edu	37	19	6183239	6183239	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:6183239G>A	uc002mef.1	+	10	1505	c.1278G>A	c.(1276-1278)TCG>TCA	p.S426S	ACSBG2_uc002mee.1_Silent_p.S239S|ACSBG2_uc002meg.1_Silent_p.S426S|ACSBG2_uc002meh.1_Silent_p.S426S|ACSBG2_uc002mei.1_Silent_p.S376S|ACSBG2_uc010xiz.1_Silent_p.S426S	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	426					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						GTGAGAGCTCGGGACCCCACA	0.547													49	105					0	0	0.000781405	0	0
GTF2F1	2962	broad.mit.edu	37	19	6389649	6389649	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:6389649C>T	uc002meq.2	-	4	418	c.133_splice	c.e4-1	p.A45_splice	GTF2F1_uc010xjb.1_5'Flank|GTF2F1_uc010xjc.1_Splice_Site_p.A17_splice	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,						mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						CCAGCCGAGCCTAGGGGAGCA	0.607													302	446					0	0	0.000781405	0	0
TNFSF14	8740	broad.mit.edu	37	19	6670004	6670004	+	Missense_Mutation	SNP	C	T	T	rs150431195		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:6670004C>T	uc002mfk.1	-	2	459	c.77G>A	c.(76-78)CGA>CAA	p.R26Q	TNFSF14_uc002mfj.1_Missense_Mutation_p.R26Q	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	26	Cytoplasmic (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						CCGGTGGCTTCGTCCCAGCCT	0.637													317	509					0	0	0.000781405	0	0
C3	718	broad.mit.edu	37	19	6697806	6697806	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:6697806C>T	uc002mfm.2	-	20	2503	c.2441_splice	c.e20-1	p.G814_splice		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor						complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACACAGATCCCTGCTCGGGCA	0.577													36	72					0	0	0.000319135	0	0
XAB2	56949	broad.mit.edu	37	19	7684728	7684729	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:7684728_7684729CG>AT	uc002mgx.2	-	18	2436_2437	c.2410_2411CG>AT	c.(2410-2412)CGG>ATG	p.R804M		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	804					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CAGCTCCTCCCGGGAGGCGTCA	0.683								Direct_reversal_of_damage|NER					17	824					0	0	6.4e-05	0	0
FCER2	2208	broad.mit.edu	37	19	7763263	7763263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:7763263C>T	uc002mhn.2	-	4	353	c.169G>A	c.(169-171)GAA>AAA	p.E57K	FCER2_uc010xjs.1_5'UTR|FCER2_uc010xjt.1_5'UTR|FCER2_uc002mhm.2_Missense_Mutation_p.E57K|FCER2_uc010dvo.2_Missense_Mutation_p.E57K	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	57	Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						GCCCTCTCTTCCAGCTGTTTT	0.632													141	241					0	0	0.000781405	0	0
FBN3	84467	broad.mit.edu	37	19	8174164	8174164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:8174164G>A	uc002mjf.2	-	35	4586	c.4565C>T	c.(4564-4566)TCC>TTC	p.S1522F		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1522	TB 6.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CCGGCCCAGGGAGCAACAGCA	0.627													88	201					0	0	0.000781405	0	0
KANK3	256949	broad.mit.edu	37	19	8389897	8389897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:8389897C>T	uc010dwa.2	-	8	2086	c.2020G>A	c.(2020-2022)GAG>AAG	p.E674K		NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	674	ANK 2.										0						GCCATGTCCTCCTCTTCCTGC	0.632													259	455					0	0	0.000781405	0	0
ANGPTL4	51129	broad.mit.edu	37	19	8431098	8431098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:8431098G>A	uc002mjq.1	+	3	637	c.442G>A	c.(442-444)GAC>AAC	p.D148N	ANGPTL4_uc002mjr.1_Missense_Mutation_p.D148N|ANGPTL4_uc010xkc.1_5'UTR	NM_139314	NP_647475	Q9BY76	ANGL4_HUMAN	angiopoietin-like 4 protein isoform a precursor	148					angiogenesis|cell differentiation|cellular lipid metabolic process|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|positive regulation of angiogenesis|response to hypoxia|signal transduction|triglyceride homeostasis	extracellular space|proteinaceous extracellular matrix	enzyme inhibitor activity|receptor binding			ovary(1)	1						TGGCCTCCTGGACCACAAGCA	0.637													236	476					0	0	0.000781405	0	0
MARCH2	51257	broad.mit.edu	37	19	8486870	8486870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:8486870C>T	uc002mjv.2	+	3	587	c.146C>T	c.(145-147)TCC>TTC	p.S49F	MARCH2_uc002mjw.2_Missense_Mutation_p.S49F|MARCH2_uc002mjx.2_Missense_Mutation_p.S49F	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	49					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CGGCTCCTCTCCACCGTCATC	0.622													203	369					0	0	0.000781405	0	0
PRAM1	84106	broad.mit.edu	37	19	8563693	8563693	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:8563693G>A	uc002mkd.2	-	2	1019	c.999C>T	c.(997-999)TCC>TCT	p.S333S	PRAM1_uc002mkc.2_Silent_p.S333S	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	381	Pro-rich.						lipid binding|protein binding				0						CGGGCTCTGAGGAGGTCCTGG	0.687													50	58					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9049457	9049457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9049457G>A	uc002mkp.2	-	5	32378	c.32174C>T	c.(32173-32175)CCA>CTA	p.P10725L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10727	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCATAATTGGAATAGCTGA	0.443													101	187					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9057986	9057986	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9057986G>A	uc002mkp.2	-	3	29664	c.29460C>T	c.(29458-29460)TCC>TCT	p.S9820S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9822	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAACAGAACTGGAGGTCCTCA	0.478													23	46					0	0	0.00047179	0	0
MUC16	94025	broad.mit.edu	37	19	9062265	9062265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9062265G>A	uc002mkp.2	-	3	25385	c.25181C>T	c.(25180-25182)TCC>TTC	p.S8394F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8396	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGATATGGAAACACTCGT	0.483													34	37					0	0	0.000491102	0	0
MUC16	94025	broad.mit.edu	37	19	9065268	9065268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9065268G>A	uc002mkp.2	-	3	22382	c.22178C>T	c.(22177-22179)TCT>TTT	p.S7393F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7395	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGCTGGGAAGATGGAGGGCT	0.512													14	17					0	0	0.000151284	0	0
MUC16	94025	broad.mit.edu	37	19	9066502	9066502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9066502C>T	uc002mkp.2	-	3	21148	c.20944G>A	c.(20944-20946)GAG>AAG	p.E6982K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6984	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAGACCTCAGCAGTAGTA	0.483													42	77					0	0	0.00128727	0	0
MUC16	94025	broad.mit.edu	37	19	9070884	9070884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9070884C>T	uc002mkp.2	-	3	16766	c.16562G>A	c.(16561-16563)AGA>AAA	p.R5521K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5523	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATTTCTGTTCTGGAGGCCTG	0.507													24	35					0	0	0.000586117	0	0
MUC16	94025	broad.mit.edu	37	19	9074523	9074523	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9074523C>A	uc002mkp.2	-	3	13127	c.12923G>T	c.(12922-12924)GGA>GTA	p.G4308V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4310	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCCTGAAGTCCCTGGTTCAC	0.512													15	21					6.31663e-08	4.40892e-07	0.000308642	1	0
MUC16	94025	broad.mit.edu	37	19	9074994	9074994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9074994G>A	uc002mkp.2	-	3	12656	c.12452C>T	c.(12451-12453)CCC>CTC	p.P4151L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4153	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCACAGAGGGAGGGCTTGG	0.502													37	56					0	0	0.000953801	0	0
MUC16	94025	broad.mit.edu	37	19	9077717	9077717	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9077717T>C	uc002mkp.2	-	3	9933	c.9729A>G	c.(9727-9729)GAA>GAG	p.E3243E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3244	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTGACTGGTTCCACTGTGG	0.527													63	93					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9085475	9085475	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9085475G>A	uc002mkp.2	-	1	6544	c.6340C>T	c.(6340-6342)CAG>TAG	p.Q2114*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2114	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGTATTCTGGGGACCATGG	0.488													67	119					0	0	0.000781405	0	0
OR1M1	125963	broad.mit.edu	37	19	9204400	9204400	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9204400C>T	uc010xkj.1	+	1	480	c.480C>T	c.(478-480)ATC>ATT	p.I160I		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TCACTCACATCCTCCTGATGG	0.597													113	187					0	0	0.000781405	0	0
ZNF121	7675	broad.mit.edu	37	19	9677121	9677121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9677121G>A	uc010xkp.1	-	4	900	c.668C>T	c.(667-669)ACT>ATT	p.T223I	ZNF121_uc010dwt.2_Missense_Mutation_p.T223I|ZNF121_uc010xkq.1_Missense_Mutation_p.T223I	NM_001008727	NP_001008727	P58317	ZN121_HUMAN	zinc finger protein 121	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTCTCTCCAGTGTGTATTCG	0.413													46	86					0	0	0.000680045	0	0
ZNF562	54811	broad.mit.edu	37	19	9764094	9764094	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9764094T>C	uc010xks.1	-	6	975	c.812A>G	c.(811-813)AAT>AGT	p.N271S	ZNF562_uc002mly.2_Missense_Mutation_p.N271S|ZNF562_uc002mlx.2_Missense_Mutation_p.N199S|ZNF562_uc010xkt.1_Missense_Mutation_p.N234S|ZNF562_uc010xku.1_Missense_Mutation_p.N202S|ZNF562_uc010xkv.1_Missense_Mutation_p.N270S|ZNF562_uc010xkw.1_Missense_Mutation_p.N155S	NM_001130032	NP_001123504	Q6V9R5	ZN562_HUMAN	zinc finger protein 562 isoform a	271	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTGAGAAAAATTAGTGAAGGA	0.373													33	107					0	0	0.000339439	0	0
ZNF562	54811	broad.mit.edu	37	19	9768812	9768812	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9768812C>T	uc010xks.1	-	4	278	c.115_splice	c.e4-1	p.D39_splice	ZNF562_uc002mly.2_Splice_Site_p.D39_splice|ZNF562_uc002mlx.2_Intron|ZNF562_uc010xkt.1_Splice_Site_p.D2_splice|ZNF562_uc010xku.1_Splice_Site|ZNF562_uc010xkv.1_Splice_Site_p.D39_splice|ZNF562_uc010xkw.1_Intron	NM_001130032	NP_001123504	Q6V9R5	ZN562_HUMAN	zinc finger protein 562 isoform a						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCACTGAATCCTAAGTCATCA	0.453													35	27					0	0	0.000953801	0	0
ZNF846	162993	broad.mit.edu	37	19	9868912	9868912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:9868912G>A	uc002mmb.1	-	6	1372	c.841C>T	c.(841-843)CCA>TCA	p.P281S	ZNF846_uc010xky.1_RNA|ZNF846_uc010xkz.1_RNA|ZNF846_uc010dww.2_Missense_Mutation_p.P152S|ZNF846_uc002mmc.1_Missense_Mutation_p.P152S	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	281					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATTTATATGGTTTTTCTCCA	0.398													114	209					0	0	0.000781405	0	0
COL5A3	50509	broad.mit.edu	37	19	10114341	10114341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:10114341C>T	uc002mmq.1	-	6	835	c.749G>A	c.(748-750)GGA>GAA	p.G250E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	250	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCTCCCTTTTCCCTTCCCCTT	0.587													195	205					0	0	0.000781405	0	0
SMARCA4	6597	broad.mit.edu	37	19	11118581	11118581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:11118581G>A	uc002mqf.3	+	14	2289	c.2005G>A	c.(2005-2007)GAG>AAG	p.E669K	SMARCA4_uc010dxp.2_Missense_Mutation_p.E669K|SMARCA4_uc010dxo.2_Missense_Mutation_p.E669K|SMARCA4_uc002mqg.1_Missense_Mutation_p.E669K|SMARCA4_uc010dxq.2_Missense_Mutation_p.E669K|SMARCA4_uc010dxr.2_Missense_Mutation_p.E669K|SMARCA4_uc002mqj.3_Missense_Mutation_p.E669K|SMARCA4_uc010dxs.2_Missense_Mutation_p.E669K	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	669	Poly-Glu.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				TTGGTAGGAGGAGGAGGAAGA	0.582			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				96	194					0	0	0.000781405	0	0
DOCK6	57572	broad.mit.edu	37	19	11332692	11332692	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:11332692A>T	uc002mqs.3	-	28	3426	c.3385T>A	c.(3385-3387)TTC>ATC	p.F1129I	DOCK6_uc010xlq.1_Missense_Mutation_p.F468I	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1129					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TGCAACAGGAATGCCCTATGG	0.607													96	192					0	0	0.000781405	0	0
ZNF627	199692	broad.mit.edu	37	19	11728690	11728690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:11728690C>T	uc002msk.2	+	4	1580	c.1372C>T	c.(1372-1374)CCA>TCA	p.P458S	ZNF627_uc010dyf.2_Missense_Mutation_p.P348S	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTCAGTTGTCCCAGTTCTTTC	0.418													67	141					0	0	0.000781405	0	0
ZNF439	90594	broad.mit.edu	37	19	11978504	11978504	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:11978504T>A	uc002mss.2	+	3	748	c.620T>A	c.(619-621)GTG>GAG	p.V207E	ZNF439_uc002msr.2_Missense_Mutation_p.V71E	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	207	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CACATGGTAGTGCACAGTGGG	0.373													141	194					0	0	0.000781405	0	0
ZNF136	7695	broad.mit.edu	37	19	12298386	12298386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:12298386G>A	uc002mti.2	+	4	1293	c.1193G>A	c.(1192-1194)GGG>GAG	p.G398E	ZNF136_uc010xmh.1_Missense_Mutation_p.G332E	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	398	C2H2-type 10.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						AAGGTATGTGGGAAACCCTTT	0.383													82	181					0	0	0.000781405	0	0
PRDX2	7001	broad.mit.edu	37	19	12911090	12911090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:12911090C>T	uc002mvd.2	-	4	431	c.281G>A	c.(280-282)GGA>GAA	p.G94E		NM_005809	NP_005800	P32119	PRDX2_HUMAN	peroxiredoxin 2 isoform a	94	Thioredoxin.				anti-apoptosis|cell redox homeostasis|hydrogen peroxide catabolic process|removal of superoxide radicals		thioredoxin peroxidase activity				0						GCCCAAGCCTCCCTCTTTCCG	0.607													352	510					0	0	0.000781405	0	0
FARSA	2193	broad.mit.edu	37	19	13033639	13033639	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:13033639G>A	uc002mvs.2	-	13	1498	c.1450C>T	c.(1450-1452)CTG>TTG	p.L484L	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Silent_p.L453L	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	484					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	ACCATCTGCAGGTTCACCTTG	0.557													334	576					0	0	0.000781405	0	0
OR7C2	26658	broad.mit.edu	37	19	15052948	15052948	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:15052948C>T	uc010xoc.1	+	1	648	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					GAATCCTATTCTCTTATTCTC	0.468													114	157					0	0	0.000781405	0	0
ILVBL	10994	broad.mit.edu	37	19	15226123	15226124	+	Missense_Mutation	DNP	CG	AT	AT	rs146472972		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:15226123_15226124CG>AT	uc002nam.2	-	16	1959_1960	c.1838_1839CG>AT	c.(1837-1839)CCG>CAT	p.P613H	ILVBL_uc010xof.1_Missense_Mutation_p.P254H|ILVBL_uc010dzw.2_Missense_Mutation_p.P506H	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	613						integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						TGACCACAACCGGGTGGCCGTC	0.634													10	794					0	0	6.4e-05	0	0
AKAP8	10270	broad.mit.edu	37	19	15472548	15472548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:15472548G>A	uc002nav.2	-	11	1449	c.1388C>T	c.(1387-1389)CCT>CTT	p.P463L	AKAP8_uc010dzy.2_Missense_Mutation_p.P12L|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_Missense_Mutation_p.P277L	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	463					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						ACCTTTGAAAGGATCTGGTTT	0.413													161	343					0	0	0.000781405	0	0
RASAL3	64926	broad.mit.edu	37	19	15565513	15565513	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:15565513A>G	uc002nbe.2	-	12	1999	c.1913T>C	c.(1912-1914)CTC>CCC	p.L638P	RASAL3_uc002nbd.2_5'Flank|RASAL3_uc010eaa.1_Missense_Mutation_p.L126P	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	638	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						AATCAGTGTGAGGGTGCGGGC	0.662											OREG0025322	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	193					0	0	0.00116845	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739586	15739586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:15739586C>T	uc002nbi.2	+	14	1394	c.1330C>T	c.(1330-1332)CGC>TGC	p.R444C	CYP4F8_uc010xoj.1_Missense_Mutation_p.R256C	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	444					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						TGACCCCTTCCGCTTCGACCC	0.597													152	335					0	0	0.000781405	0	0
CYP4F3	4051	broad.mit.edu	37	19	15756645	15756645	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:15756645C>T	uc002nbj.2	+	3	365	c.315C>T	c.(313-315)ACC>ACT	p.T105T	CYP4F3_uc010xok.1_Intron|CYP4F3_uc010xol.1_Intron|CYP4F3_uc010xom.1_Intron|CYP4F3_uc002nbk.2_Intron	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	105					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						TCCACCCCACCTACATCAAGC	0.592													82	133					0	0	0.000781405	0	0
NWD1	284434	broad.mit.edu	37	19	16902221	16902222	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:16902221_16902222GA>AT	uc002neu.3	+	14	3423_3424	c.3001_3002GA>AT	c.(3001-3003)GAT>ATT	p.D1001I	NWD1_uc002net.3_Missense_Mutation_p.D866I|NWD1_uc002nev.3_Missense_Mutation_p.D795I			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1001	WD 5.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						AGATGCCTCTGATCCTTGGATG	0.525													104	225					0	0	6.4e-05	0	0
NWD1	284434	broad.mit.edu	37	19	16905281	16905281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:16905281C>T	uc002neu.3	+	15	3643	c.3221C>T	c.(3220-3222)TCC>TTC	p.S1074F	NWD1_uc002net.3_Missense_Mutation_p.S939F|NWD1_uc002nev.3_Missense_Mutation_p.S868F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1074	WD 6.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CAGGTTTCCTCCAAAGGGGAC	0.458													26	47					0	0	0.00127121	0	0
CPAMD8	27151	broad.mit.edu	37	19	17122550	17122551	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17122550_17122551CC>AA	uc002nfb.2	-	4	457_458	c.425_426GG>TT	c.(424-426)CGG>CTT	p.R142L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	95						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GCGCTTGGCCCCGGAGGCCCGT	0.649													9	483					0	0	6.4e-05	0	0
HAUS8	93323	broad.mit.edu	37	19	17163694	17163694	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17163694C>A	uc002nfe.2	-	10	981	c.870G>T	c.(868-870)GTG>GTT	p.V290V	HAUS8_uc002nff.2_Silent_p.V289V|HAUS8_uc002nfg.1_Silent_p.V229V|HAUS8_uc002nfh.1_Silent_p.V290V	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	290					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						GTAAGTCCAGCACCTGCACAT	0.532											OREG0025339	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	195	365					3.15268e-66	2.22542e-65	0.000781405	1	0
MYO9B	4650	broad.mit.edu	37	19	17306163	17306163	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17306163C>A	uc010eak.2	+	22	4079	c.3927C>A	c.(3925-3927)GCC>GCA	p.A1309A	MYO9B_uc002nfi.2_Silent_p.A1309A|MYO9B_uc002nfj.1_Silent_p.A1309A|MYO9B_uc002nfl.1_5'Flank	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1309	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						TGGCCAGCGCCGTGGAACTGT	0.687													8	403					3.86212e-05	0.000268012	0.000673444	1	0
UNC13A	23025	broad.mit.edu	37	19	17737533	17737533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17737533C>T	uc002nhd.2	-	34	4246	c.4246G>A	c.(4246-4248)GGC>AGC	p.G1416S		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1328					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TTGCCTGTGCCCTTAACCTGG	0.587													56	92					0	0	0.000781405	0	0
UNC13A	23025	broad.mit.edu	37	19	17785529	17785529	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17785529T>C	uc002nhd.2	-	4	353	c.353A>G	c.(352-354)AAT>AGT	p.N118S		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	30	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GCTCTTGACATTCTGCACTTT	0.592													225	403					0	0	0.000781405	0	0
MAP1S	55201	broad.mit.edu	37	19	17836861	17836861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17836861C>T	uc002nhe.1	+	5	677	c.668C>T	c.(667-669)CCC>CTC	p.P223L	MAP1S_uc010eaz.1_RNA|MAP1S_uc010eba.1_Missense_Mutation_p.P223L|MAP1S_uc002nhf.1_Intron|MAP1S_uc010xpv.1_Missense_Mutation_p.P197L	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	223	Necessary for the microtubule-organizing center localization.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						CCACCGTCCCCCTTCGAGCTG	0.692													103	201					0	0	0.000781405	0	0
TMEM161A	54929	broad.mit.edu	37	19	19231604	19231604	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:19231604G>T	uc002nlg.2	-	11	1186	c.1156C>A	c.(1156-1158)CTC>ATC	p.L386I	TMEM161A_uc010eca.2_RNA|TMEM161A_uc002nlh.2_Missense_Mutation_p.L361I|TMEM161A_uc002nli.2_Missense_Mutation_p.L283I|TMEM161A_uc002nlj.2_Missense_Mutation_p.L261I	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor	386	Helical; (Potential).				cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			GTGCAGTTGAGGGTGAGGATG	0.602													12	827					0.000219431	0.00151667	0.000219431	1	0
NDUFA13	51079	broad.mit.edu	37	19	19627014	19627015	+	Missense_Mutation	DNP	CC	TT	TT	rs147346438		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:19627014_19627015CC>TT	uc010xqy.1	+	1	475_476	c.216_217CC>TT	c.(214-219)TTCCGC>TTTTGC	p.R73C	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Missense_Mutation_p.R73C|NDUFA13_uc010xqx.1_Missense_Mutation_p.R73C	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TAAGTCACTTCCGCCCGGGACC	0.609													261	355					0	0	6.4e-05	0	0
LPAR2	9170	broad.mit.edu	37	19	19735326	19735326	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:19735326A>G	uc002nnb.3	-	3	934	c.795T>C	c.(793-795)GGT>GGC	p.G265G	LPAR2_uc002nna.3_Silent_p.G265G|LPAR2_uc002nnc.3_Silent_p.G265G	NM_004720	NP_004711	Q9HBW0	LPAR2_HUMAN	lysophosphatidic acid receptor 2	265	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	cell surface|integral to plasma membrane	LIM domain binding|lipid binding			ovary(1)|breast(1)	2						CACAGCCTAAACCATCCAGGA	0.592													156	304					0	0	0.000781405	0	0
ZNF98	148198	broad.mit.edu	37	19	22574359	22574359	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:22574359T>A	uc002nqt.2	-	4	1800	c.1678A>T	c.(1678-1680)AAG>TAG	p.K560*		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	560					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TTGGAAATCTTTGCAATGTTG	0.328													7	6					0	0	0.000274275	0	0
ZNF536	9745	broad.mit.edu	37	19	30935622	30935622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:30935622C>T	uc002nsu.1	+	2	1291	c.1153C>T	c.(1153-1155)CCC>TCC	p.P385S	ZNF536_uc010edd.1_Missense_Mutation_p.P385S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	385	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CTTCAAGGAGCCCTGGTTCCT	0.597													271	470					0	0	0.000781405	0	0
ZNF536	9745	broad.mit.edu	37	19	30936358	30936358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:30936358C>T	uc002nsu.1	+	2	2027	c.1889C>T	c.(1888-1890)CCC>CTC	p.P630L	ZNF536_uc010edd.1_Missense_Mutation_p.P630L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	630					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AAGGAGAAGCCCACCGAGTGC	0.602													271	614					0	0	0.000781405	0	0
SLC7A10	56301	broad.mit.edu	37	19	33706762	33706762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:33706762G>A	uc002num.2	-	2	416	c.269C>T	c.(268-270)TCC>TTC	p.S90F	SLC7A10_uc010xrq.1_Intron	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10	90	Helical; (Potential).				blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					ATAGCAGAGGGAGCCCAGAGC	0.667													32	72					0	0	0.000339439	0	0
GRAMD1A	57655	broad.mit.edu	37	19	35501050	35501050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:35501050C>T	uc010xse.1	+	5	517	c.380C>T	c.(379-381)TCT>TTT	p.S127F	GRAMD1A_uc002nxi.1_Missense_Mutation_p.S214F|GRAMD1A_uc002nxk.2_Missense_Mutation_p.S120F|GRAMD1A_uc002nxl.2_5'UTR|GRAMD1A_uc010xsf.1_Missense_Mutation_p.S132F	NM_020895	NP_065946	Q96CP6	GRM1A_HUMAN	GRAM domain containing 1A isoform 1	127	GRAM.					integral to membrane					0	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CTCTACCTCTCTGAGAACTGG	0.657													332	547					0	0	0.000781405	0	0
RBM42	79171	broad.mit.edu	37	19	36125256	36125257	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:36125256_36125257CC>TT	uc002oan.2	+	8	1192_1193	c.1116_1117CC>TT	c.(1114-1119)AGCCTG>AGTTTG	p.372_373SL>SL	RBM42_uc010eef.2_Silent_p.318_319SL>SL|RBM42_uc002oao.2_Silent_p.350_351SL>SL|RBM42_uc002oap.2_Silent_p.342_343SL>SL|RBM42_uc002oaq.2_Silent_p.343_344SL>SL|RBM42_uc010eeg.2_Silent_p.343_344SL>SL	NM_024321	NP_077297	Q9BTD8	RBM42_HUMAN	RNA binding motif protein 42	372_373	Necessary for interaction with HNRNPK (By similarity).					cytoplasm|nucleus	nucleotide binding|RNA binding				0	all_lung(56;1.58e-07)|Lung NSC(56;2.43e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			AGGACCCCAGCCTGCTGGAGTG	0.624													179	322					0	0	6.4e-05	0	0
MLL4	9757	broad.mit.edu	37	19	36213929	36213929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:36213929C>T	uc010eei.2	+	6	2755	c.2755C>T	c.(2755-2757)CCG>TCG	p.P919S		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	919					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGAGAGTGTCCCGTCACGGTC	0.647													93	140					0	0	0.000781405	0	0
NPHS1	4868	broad.mit.edu	37	19	36333054	36333054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:36333054C>T	uc002oby.2	-	19	2635	c.2635G>A	c.(2635-2637)GGG>AGG	p.G879R	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	879	Ig-like C2-type 8.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGAGGGACCCCGTTTTTTGTC	0.617													91	130					0	0	0.000781405	0	0
ZNF568	374900	broad.mit.edu	37	19	37440439	37440439	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:37440439C>T	uc002ofc.2	+	7	899	c.384C>T	c.(382-384)ATC>ATT	p.I128I	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Silent_p.I52I|ZNF568_uc010efe.2_Silent_p.I52I|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	128				I -> V (in Ref. 1; CAE45810).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATGAACAGATCAAGAAGCAAC	0.323													24	46					0	0	0.000375601	0	0
ZNF527	84503	broad.mit.edu	37	19	37880001	37880001	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:37880001G>A	uc010efk.1	+	5	1161	c.1050G>A	c.(1048-1050)AGG>AGA	p.R350R	ZNF527_uc002ogf.3_Silent_p.R318R|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	350	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AACATCAGAGGATCCACACTG	0.438													51	74					0	0	0.000781405	0	0
ZNF607	84775	broad.mit.edu	37	19	38190356	38190356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:38190356C>T	uc002ohc.1	-	5	1272	c.676G>A	c.(676-678)GAA>AAA	p.E226K	ZNF607_uc002ohb.1_Missense_Mutation_p.E225K	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	226	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			TCCTTACATTCGTAGGGTTTC	0.418													120	234					0	0	0.000781405	0	0
CATSPERG	57828	broad.mit.edu	37	19	38860892	38860892	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:38860892C>G	uc002oih.3	+	28	3294	c.3207C>G	c.(3205-3207)ATC>ATG	p.I1069M	CATSPERG_uc002oig.3_Missense_Mutation_p.I1029M|CATSPERG_uc002oif.3_Missense_Mutation_p.I709M|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1069	Helical; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CCCTTTTCATCATCATGGTGA	0.577													4	310					0	0	0.00024832	0	0
RYR1	6261	broad.mit.edu	37	19	39025372	39025372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:39025372G>A	uc002oit.2	+	79	11402	c.11272G>A	c.(11272-11274)GAG>AAG	p.E3758K	RYR1_uc002oiu.2_Missense_Mutation_p.E3753K|RYR1_uc002oiv.1_Missense_Mutation_p.E673K|RYR1_uc010xuf.1_Missense_Mutation_p.E678K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3758					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAAACAGATGGAGAAGCAGAG	0.592													65	100					0	0	0.000781405	0	0
MAP4K1	11184	broad.mit.edu	37	19	39103298	39103298	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:39103298G>A	uc002oix.1	-	9	726	c.618C>T	c.(616-618)ATC>ATT	p.I206I	MAP4K1_uc002oiy.1_Silent_p.I206I|MAP4K1_uc010xug.1_5'UTR	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	206	Protein kinase.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CGGCCAGTTCGATGGCCGTGA	0.632													216	376					0	0	0.000781405	0	0
FCGBP	8857	broad.mit.edu	37	19	40430452	40430452	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:40430452C>T	uc002omp.3	-	3	1499	c.1491G>A	c.(1489-1491)ACG>ACA	p.T497T		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	497	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCTCCACCATCGTGTACGAAC	0.682													42	86					0	0	0.000319135	0	0
AKT2	208	broad.mit.edu	37	19	40741983	40741983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:40741983G>A	uc002onf.2	-	11	1251	c.989C>T	c.(988-990)GCC>GTC	p.A330V	AKT2_uc010egs.2_Missense_Mutation_p.A287V|AKT2_uc010egt.2_Missense_Mutation_p.A268V|AKT2_uc010xvj.1_Missense_Mutation_p.A268V|AKT2_uc010egu.1_Missense_Mutation_p.A268V|AKT2_uc002one.2_Missense_Mutation_p.A226V	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	330	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			CCAGTCCACGGCCCGGCCATA	0.637			A		ovarian|pancreatic 								328	591					0	0	0.000781405	0	0
PRX	57716	broad.mit.edu	37	19	40900086	40900087	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:40900086_40900087CC>AA	uc002onr.2	-	7	4441_4442	c.4172_4173GG>TT	c.(4171-4173)CGG>CTT	p.R1391L	PRX_uc002onq.2_Missense_Mutation_p.R1252L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1391					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTCCTGCCCCCGAGAGGCTTT	0.658													12	831					0	0	6.4e-05	0	0
C19orf54	284325	broad.mit.edu	37	19	41250078	41250078	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41250078G>A	uc002oou.1	-	4	661	c.541C>T	c.(541-543)CAG>TAG	p.Q181*	C19orf54_uc002oow.1_Intron|C19orf54_uc002oox.1_RNA|C19orf54_uc002ooy.1_Intron|C19orf54_uc010xvs.1_Intron	NM_198476	NP_940878	Q5BKX5	CS054_HUMAN	hypothetical protein LOC284325	181											0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			AGCACCTCCTGGGCCAGCCTG	0.498													44	85					0	0	0.000374591	0	0
SNRPA	6626	broad.mit.edu	37	19	41263307	41263308	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41263307_41263308CC>TT	uc002ooz.2	+	2	679_680	c.144_145CC>TT	c.(142-147)AGCCTG>AGTTTG	p.48_49SL>SL	SNRPA_uc002opa.2_5'UTR	NM_004596	NP_004587	P09012	SNRPA_HUMAN	small nuclear ribonucleoprotein polypeptide A	48_49	RRM 1.					nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding			skin(2)|ovary(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			TATCACGGAGCCTGAAGATGAG	0.53													137	212					0	0	6.4e-05	0	0
CYP2A6	1548	broad.mit.edu	37	19	41349793	41349793	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41349793A>G	uc002opl.3	-	9	1414	c.1393T>C	c.(1393-1395)TCC>CCC	p.S465P		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	465					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	GGTGACTGGGAGGACTTGAGG	0.572													4	628					0	0	0.000602214	0	0
CYP2A6	1548	broad.mit.edu	37	19	41351362	41351362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41351362C>T	uc002opl.3	-	7	1019	c.998G>A	c.(997-999)AGA>AAA	p.R333K	CYP2A6_uc010ehe.1_Missense_Mutation_p.R129K	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	333					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	GCCGATCACTCTGTCAATCTC	0.527													230	424					0	0	0.000781405	0	0
CYP2A6	1548	broad.mit.edu	37	19	41354552	41354552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41354552C>T	uc002opl.3	-	3	481	c.460G>A	c.(460-462)GGC>AGC	p.G154S	CYP2A6_uc010ehe.1_5'UTR|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	154					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	ATGAGGAAGCCCGCCTCCTCC	0.716													12	590					0	0	0.000375601	0	0
CYP2A7	1549	broad.mit.edu	37	19	41386417	41386418	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41386417_41386418CC>TT	uc002opm.2	-	3	1001_1002	c.459_460GG>AA	c.(457-462)TCGGGC>TCAAGC	p.G154S	CYP2A7_uc002opo.2_Missense_Mutation_p.G154S|CYP2A7_uc002opn.2_Missense_Mutation_p.G103S	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	154						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ATGAGGAAGCCCGACTCCTCCT	0.673													110	345					0	0	6.4e-05	0	0
CYP2B6	1555	broad.mit.edu	37	19	41518286	41518286	+	Missense_Mutation	SNP	G	A	A	rs45466193		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41518286G>A	uc002opr.1	+	7	1055	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.E150K	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	350					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	GCCATACACAGAGGCAGTCAT	0.512													62	92					0	0	0.000781405	0	0
AXL	558	broad.mit.edu	37	19	41765525	41765525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:41765525G>A	uc010ehj.2	+	20	2591	c.2401G>A	c.(2401-2403)GAA>AAA	p.E801K	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_5'Flank|HNRNPUL1_uc002oqa.3_5'Flank|AXL_uc010ehk.2_Missense_Mutation_p.E792K	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	801	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						AGAGCTGCGGGAAGATTTGGA	0.552													162	314					0	0	0.000781405	0	0
CEACAM5	1048	broad.mit.edu	37	19	42222055	42222055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:42222055G>A	uc002ork.2	+	6	1367	c.1246G>A	c.(1246-1248)GAC>AAC	p.D416N	CEACAM5_uc002orj.1_Missense_Mutation_p.D415N|CEACAM5_uc002orl.2_Missense_Mutation_p.D416N	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	416	Ig-like 5.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		AGATGGCCCAGACGACCCCAC	0.562													113	203					0	0	0.000781405	0	0
PSG8	440533	broad.mit.edu	37	19	43262211	43262211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:43262211C>T	uc002ouo.2	-	3	750	c.652G>A	c.(652-654)GAA>AAA	p.E218K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Missense_Mutation_p.E57K|PSG8_uc002ouh.2_Missense_Mutation_p.E218K|PSG8_uc010ein.2_Missense_Mutation_p.E96K|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Missense_Mutation_p.E57K|PSG8_uc002oul.3_Missense_Mutation_p.E218K|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	218	Ig-like C2-type 1.					extracellular region					0		Prostate(69;0.00899)				TTCCGTATTTCACATTCATAG	0.512													261	461					0	0	0.000781405	0	0
PSG1	5669	broad.mit.edu	37	19	43372477	43372477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:43372477G>A	uc002ovb.2	-	5	1157	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_Intron|PSG1_uc002our.1_Missense_Mutation_p.S340L|PSG1_uc010eio.1_Missense_Mutation_p.S340L|PSG1_uc002oux.1_Missense_Mutation_p.S269L|PSG1_uc002ouy.1_Missense_Mutation_p.S247L|PSG1_uc002ouz.1_Missense_Mutation_p.S340L|PSG1_uc002ova.1_Missense_Mutation_p.S247L|PSG1_uc002ovc.2_Missense_Mutation_p.S247L|PSG1_uc002ovd.1_Missense_Mutation_p.S340L	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	340	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				ATAGGTGAATGAAGGGTAAAT	0.468													69	145					0	0	0.000781405	0	0
IRGC	56269	broad.mit.edu	37	19	44223308	44223308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:44223308G>A	uc002oxh.2	+	2	745	c.598G>A	c.(598-600)GAG>AAG	p.E200K		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	200						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CCACTGTGCCGAGCGGCTGCG	0.701													217	363					0	0	0.000781405	0	0
ZNF229	7772	broad.mit.edu	37	19	44933888	44933888	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:44933888C>T	uc002oze.1	-	6	1502	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	ZNF229_uc010ejk.1_Silent_p.K10K|ZNF229_uc010ejl.1_Silent_p.K350K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	356	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				ACCTGAACCCCTTTCCACAGA	0.512													44	95					0	0	0.000509022	0	0
GPR4	2828	broad.mit.edu	37	19	46094863	46094864	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:46094863_46094864CG>AT	uc002pcm.2	-	2	1206_1207	c.261_262CG>AT	c.(259-264)CCCGGG>CCATGG	p.G88W	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	88	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		TTGCAGGACCCGGGGCCGTGGA	0.579													11	859					0	0	6.4e-05	0	0
FOXA3	3171	broad.mit.edu	37	19	46375989	46375989	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:46375989C>T	uc002pdr.2	+	2	923	c.726C>T	c.(724-726)ACC>ACT	p.T242T		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	242					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		CGACCACCACCCCCGCGGCCA	0.692													73	85					0	0	0.000781405	0	0
SLC1A5	6510	broad.mit.edu	37	19	47285682	47285682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:47285682G>A	uc002pfs.2	-	4	1402	c.782C>T	c.(781-783)TCC>TTC	p.S261F	SLC1A5_uc010xyh.1_Missense_Mutation_p.S59F|SLC1A5_uc002pfq.2_Missense_Mutation_p.S85F|SLC1A5_uc002pfr.2_Missense_Mutation_p.S33F	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	261					cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	CTCATTGAAGGAGTTGAAGAA	0.597													303	523					0	0	0.000781405	0	0
ZC3H4	23211	broad.mit.edu	37	19	47571034	47571034	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:47571034G>A	uc002pga.3	-	15	2529	c.2491C>T	c.(2491-2493)CGA>TGA	p.R831*	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	831							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		GCCGGGGGTCGGCTGGACGTC	0.632													65	112					0	0	0.000781405	0	0
PLA2G4C	8605	broad.mit.edu	37	19	48565294	48565294	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:48565294G>A	uc002phx.2	-	14	1616	c.1218C>T	c.(1216-1218)CTC>CTT	p.L406L	PLA2G4C_uc002phw.2_Silent_p.L341L|PLA2G4C_uc010elr.2_Silent_p.L406L|PLA2G4C_uc010xzd.1_Silent_p.L416L	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	406	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		AGGAGAGGATGAGGTGAACCT	0.607													153	228					0	0	0.000781405	0	0
LIG1	3978	broad.mit.edu	37	19	48643362	48643362	+	Missense_Mutation	SNP	G	A	A	rs111507847		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:48643362G>A	uc002pia.1	-	12	1073	c.953C>T	c.(952-954)TCC>TTC	p.S318F	LIG1_uc010xze.1_Missense_Mutation_p.S11F|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.S250F|LIG1_uc010xzg.1_Missense_Mutation_p.S287F|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	318					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GGCCACCACGGAGCGCAGCAA	0.642								NER					170	309					0	0	0.000781405	0	0
GRWD1	83743	broad.mit.edu	37	19	48953774	48953775	+	Missense_Mutation	DNP	CG	AT	AT	rs147465341	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:48953774_48953775CG>AT	uc002pjd.2	+	4	906_907	c.673_674CG>AT	c.(673-675)CGG>ATG	p.R225M		NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	225	WD 1.					nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		CTGGTCCCCCCGGGTGACCGGT	0.668													12	620					0	0	6.4e-05	0	0
RPL18	6141	broad.mit.edu	37	19	49119171	49119171	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:49119171A>T	uc002pjq.1	-	6	487	c.454T>A	c.(454-456)TTC>ATC	p.F152I	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Missense_Mutation_p.F100I	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	152					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		GCCTTGCCGAAATGCCGGTAC	0.667													87	118					0	0	0.000781405	0	0
KCNA7	3743	broad.mit.edu	37	19	49575738	49575738	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:49575738C>A	uc002pmg.2	-	1	461	c.105G>T	c.(103-105)CCG>CCT	p.P35P		NM_031886	NP_114092	Q96RP8	KCNA7_HUMAN	potassium voltage-gated channel, shaker-related	35						voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(1)	1		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_epithelial(76;3.83e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000397)|OV - Ovarian serous cystadenocarcinoma(262;0.000519)|GBM - Glioblastoma multiforme(486;0.00541)|Epithelial(262;0.0441)		GCAGAGTGTCCGGGAAGCGGC	0.751													6	176					0.00116845	0.00799463	0.00116845	1	0
PPFIA3	8541	broad.mit.edu	37	19	49633253	49633253	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:49633253C>T	uc002pmr.2	+	6	918	c.586C>T	c.(586-588)CTG>TTG	p.L196L	PPFIA3_uc010yai.1_RNA|PPFIA3_uc010emt.2_Silent_p.L120L|PPFIA3_uc010yaj.1_RNA|PPFIA3_uc002pms.2_Silent_p.L64L	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	196	Potential.					cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		CTTCCAGACTCTGAACCTTCG	0.607													319	390					0	0	0.000781405	0	0
TEAD2	8463	broad.mit.edu	37	19	49850485	49850485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:49850485G>A	uc002pnj.2	-	9	962	c.871C>T	c.(871-873)CGT>TGT	p.R291C	TEAD2_uc002png.2_Missense_Mutation_p.R294C|TEAD2_uc002pnh.2_Missense_Mutation_p.R295C|TEAD2_uc002pni.2_Missense_Mutation_p.R294C|TEAD2_uc010yao.1_Missense_Mutation_p.R163C|TEAD2_uc010emw.2_Missense_Mutation_p.R294C	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	291	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		GGGGGGCCACGATCATATAGC	0.577													362	573					0	0	0.000781405	0	0
SLC17A7	57030	broad.mit.edu	37	19	49940005	49940006	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:49940005_49940006CC>TT	uc002pnp.2	-	2	287_288	c.115_116GG>AA	c.(115-117)GGG>AAG	p.G39K	SLC17A7_uc002pnq.1_5'UTR	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	39	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		CACCGGGCGCCCATCCGCACTC	0.683													211	356					0	0	6.4e-05	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169131	50169131	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:50169131C>T	uc002ppa.2	+	1	733	c.51C>T	c.(49-51)TTC>TTT	p.F17F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F17F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	17					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTTGGGTTTCCGGCCAGAGG	0.572													310	464					0	0	0.000781405	0	0
BCL2L12	83596	broad.mit.edu	37	19	50170415	50170415	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:50170415C>A	uc002ppa.2	+	3	1181	c.499C>A	c.(499-501)CCT>ACT	p.P167T	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'Flank|IRF3_uc002pov.2_5'Flank|IRF3_uc002pow.2_5'Flank|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Missense_Mutation_p.P166T	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	167					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TGGTTTAGAGCCTGGTAAGAG	0.567													287	614					1.2836e-98	9.08123e-98	0.000781405	1	0
CPT1C	126129	broad.mit.edu	37	19	50209263	50209263	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:50209263C>T	uc002ppj.2	+	10	1267	c.1062C>T	c.(1060-1062)TCC>TCT	p.S354S	CPT1C_uc002ppl.3_Silent_p.S320S|CPT1C_uc002ppi.2_Silent_p.S271S|CPT1C_uc002ppk.2_Silent_p.S343S|CPT1C_uc010eng.2_Silent_p.S354S|CPT1C_uc010enh.2_Silent_p.S354S|CPT1C_uc010ybc.1_Silent_p.S225S|CPT1C_uc010eni.1_Silent_p.S11S	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	354	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GCCTGCTTTCCCCGAGAGCCC	0.612													254	402					0	0	0.000781405	0	0
SHANK1	50944	broad.mit.edu	37	19	51171679	51171679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:51171679C>T	uc002psx.1	-	22	3557	c.3538G>A	c.(3538-3540)GAG>AAG	p.E1180K	SHANK1_uc002psw.1_Missense_Mutation_p.E564K	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1180					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GTGGGGGGCTCCGCCTCGGTG	0.522													129	162					0	0	0.000781405	0	0
KLK5	25818	broad.mit.edu	37	19	51455882	51455882	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:51455882A>C	uc002pue.2	-	3	250	c.32T>G	c.(31-33)GTG>GGG	p.V11G	KLK5_uc002puf.2_Missense_Mutation_p.V11G|KLK5_uc002pug.2_Missense_Mutation_p.V11G	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	11					epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		AGCACAGAGCACCCACATCCA	0.622													60	153					0	0	0.000781405	0	0
KLK14	43847	broad.mit.edu	37	19	51581359	51581359	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:51581359C>G	uc002pvs.1	-	7	928	c.709G>C	c.(709-711)GGA>CGA	p.G237R		NM_022046	NP_071329	Q9P0G3	KLK14_HUMAN	kallikrein 14 preproprotein	237	Peptidase S1.				epidermis morphogenesis|fertilization|negative regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis|seminal clot liquefaction	extracellular space	serine-type endopeptidase activity			skin(1)	1		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00422)		CGCTCCATTCCCCAAGACACG	0.592													4	327					0	0	0.00024832	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033094	52033094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:52033094G>A	uc002pwy.2	-	5	1058	c.896C>T	c.(895-897)TCC>TTC	p.S299F	SIGLEC6_uc002pwz.2_Missense_Mutation_p.S283F|SIGLEC6_uc002pxa.2_Missense_Mutation_p.S299F|SIGLEC6_uc010ydb.1_Missense_Mutation_p.S236F|SIGLEC6_uc010ydc.1_Missense_Mutation_p.S299F|SIGLEC6_uc010eoz.1_Missense_Mutation_p.S277F|SIGLEC6_uc010epb.1_Missense_Mutation_p.S252F|SIGLEC6_uc010epa.1_Missense_Mutation_p.S288F	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	299	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CCCGGTATTGGAGATGGGGGT	0.627													110	171					0	0	0.000781405	0	0
FPR1	2357	broad.mit.edu	37	19	52250226	52250226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:52250226G>A	uc002pxq.2	-	2	117	c.22C>T	c.(22-24)CCC>TCC	p.P8S		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	8	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	ATGTTCGTGGGGAGAGAGGAA	0.493													6	14					0	0	0.00116845	0	0
ZNF615	284370	broad.mit.edu	37	19	52505120	52505121	+	Nonsense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:52505120_52505121GT>AA	uc002pye.1	-	5	475_476	c.183_184AC>TT	c.(181-186)GAACGA>GATTGA	p.61_62ER>D*	ZNF615_uc002pyf.1_Nonsense_Mutation_p.61_62ER>D*|ZNF615_uc002pyg.1_5'UTR|ZNF615_uc002pyh.1_Nonsense_Mutation_p.61_62ER>D*|ZNF615_uc010epi.1_Nonsense_Mutation_p.57_58ER>D*|ZNF615_uc010ydg.1_Nonsense_Mutation_p.66_67ER>D*	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	61_62	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TCTTCTCCTCGTTCCAATTTGG	0.455													46	168					0	0	6.4e-05	0	0
ZNF616	90317	broad.mit.edu	37	19	52619667	52619667	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:52619667G>T	uc002pym.2	-	4	1033	c.750C>A	c.(748-750)TTC>TTA	p.F250L	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	250	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		AATTTTTTCTGAAGATCTTGC	0.403													34	83					2.48696e-23	1.7468e-22	0.00058488	1	0
ZNF808	388558	broad.mit.edu	37	19	53056804	53056804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:53056804C>T	uc010epq.1	+	5	812	c.635C>T	c.(634-636)CCC>CTC	p.P212L	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	212					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		GGGAATAATCCCCTGAATTCT	0.393													188	341					0	0	0.000781405	0	0
MYADM	91663	broad.mit.edu	37	19	54377302	54377303	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:54377302_54377303CG>AT	uc002qcl.2	+	3	667_668	c.519_520CG>AT	c.(517-522)CCCGGG>CCATGG	p.G174W	MYADM_uc002qcm.2_Missense_Mutation_p.G174W|MYADM_uc002qcn.2_Missense_Mutation_p.G174W|MYADM_uc002qco.2_Missense_Mutation_p.G174W|MYADM_uc002qcp.2_Missense_Mutation_p.G174W	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	174	MARVEL 2.|Helical; (Potential).					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		CCACCGTACCCGGGCTGCTGAA	0.644													14	793					0	0	6.4e-05	0	0
CACNG8	59283	broad.mit.edu	37	19	54466543	54466543	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:54466543C>T	uc002qcs.1	+	1	250	c.144C>T	c.(142-144)GCC>GCT	p.A48A		NM_031895	NP_114101	Q8WXS5	CCG8_HUMAN	voltage-dependent calcium channel gamma-8	49					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic density|postsynaptic membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(19;0.0385)|all_epithelial(19;0.0207)|all_lung(19;0.145)|Lung NSC(19;0.168)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.162)		ACACGCGCGCCCTCATCTGCA	0.706													128	204					0	0	0.000781405	0	0
PRPF31	26121	broad.mit.edu	37	19	54634857	54634857	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:54634857C>A	uc002qdh.2	+	14	1890	c.1494C>A	c.(1492-1494)TCC>TCA	p.S498S	PRPF31_uc010yek.1_3'UTR	NM_015629	NP_056444	Q8WWY3	PRP31_HUMAN	pre-mRNA processing factor 31 homolog	498					assembly of spliceosomal tri-snRNP	Cajal body|MLL1 complex|nuclear speck|U4 snRNP|U4/U6 x U5 tri-snRNP complex|U4atac snRNP	RNA binding|snRNP binding			ovary(1)	1	all_cancers(19;0.00681)|all_epithelial(19;0.00362)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCCTTATGTCCACCTGAATGA	0.562													8	320					0.000157383	0.00108877	0.000157383	1	0
LILRB5	10990	broad.mit.edu	37	19	54759954	54759954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:54759954G>A	uc002qex.2	-	4	718	c.607C>T	c.(607-609)CCT>TCT	p.P203S	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.P194S|LILRB5_uc002qey.2_Missense_Mutation_p.P203S|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	203	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CACACCTGAGGGTTTTTCCTG	0.532													250	471					0	0	0.000781405	0	0
LILRA4	23547	broad.mit.edu	37	19	54844919	54844919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:54844919G>A	uc002qfj.2	-	8	1481	c.1424C>T	c.(1423-1425)CCA>CTA	p.P475L	LILRA4_uc002qfi.2_Missense_Mutation_p.P409L	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	475	Cytoplasmic (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GCTGCACCTTGGGGGGCTTCT	0.547													176	278					0	0	0.000781405	0	0
LILRP2	79166	broad.mit.edu	37	19	55221543	55221543	+	RNA	SNP	T	G	G	rs45452596		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:55221543T>G	uc002qgs.1	+	1		c.1943T>G			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CCTGTGAGGGTCTCCCACGGG	0.662													4	193					0	0	0.000673444	0	0
LILRP2	79166	broad.mit.edu	37	19	55221570	55221570	+	RNA	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:55221570A>C	uc002qgs.1	+	1		c.1970A>C			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						TACAGATGCTACGGTGCACAC	0.677													5	232					0	0	0.000978159	0	0
BRSK1	84446	broad.mit.edu	37	19	55816724	55816724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:55816724G>A	uc002qkg.2	+	15	2030	c.1753G>A	c.(1753-1755)GAG>AAG	p.E585K	BRSK1_uc002qkf.2_Missense_Mutation_p.E601K|BRSK1_uc002qkh.2_Missense_Mutation_p.E280K	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	585					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		CTTGACGCCAGAGTCCTCCCC	0.612													147	268					0	0	0.000781405	0	0
EPN1	29924	broad.mit.edu	37	19	56206590	56206591	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:56206590_56206591CC>AT	uc002qlw.2	+	11	1941_1942	c.1599_1600CC>AT	c.(1597-1602)CTCCGT>CTATGT	p.R534C	EPN1_uc002qlv.2_Missense_Mutation_p.R508C|EPN1_uc010etd.2_Missense_Mutation_p.R533C|EPN1_uc002qlx.2_Missense_Mutation_p.R620C	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	534	Ala/Gly/Pro-rich.|3 X 3 AA repeats of N-P-F.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		TGAACCAGCTCCGTCTCAGTCC	0.629													136	171					0	0	6.4e-05	0	0
NLRP9	338321	broad.mit.edu	37	19	56243633	56243633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:56243633C>T	uc002qly.2	-	2	1592	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	522						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TGGGTTATTTCCTGCTTTAGG	0.413													106	213					0	0	0.000781405	0	0
NLRP11	204801	broad.mit.edu	37	19	56321645	56321645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:56321645G>A	uc010ygf.1	-	5	1042	c.331C>T	c.(331-333)CAC>TAC	p.H111Y	NLRP11_uc002qlz.2_Missense_Mutation_p.H12Y|NLRP11_uc002qmb.2_Missense_Mutation_p.H12Y|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	111							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CCAAAAGTGTGACTTTCCCAT	0.383													28	61					0	0	0.001512	0	0
NLRP4	147945	broad.mit.edu	37	19	56369416	56369416	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:56369416C>T	uc002qmd.3	+	3	1079	c.657C>T	c.(655-657)ATC>ATT	p.I219I	NLRP4_uc002qmf.2_Silent_p.I144I|NLRP4_uc010etf.2_Silent_p.I50I	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	219	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TAACAGAGATCGTGTCTCAAC	0.537													105	225					0	0	0.000781405	0	0
NLRP5	126206	broad.mit.edu	37	19	56539571	56539571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:56539571C>T	uc002qmj.2	+	7	1972	c.1972C>T	c.(1972-1974)CCC>TCC	p.P658S	NLRP5_uc002qmi.2_Missense_Mutation_p.P639S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	658						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTGTCCCGTTCCCCTGGGGGT	0.587													196	343					0	0	0.000781405	0	0
ZNF749	388567	broad.mit.edu	37	19	57955633	57955633	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:57955633C>T	uc002qoq.2	+	3	1371	c.1117C>T	c.(1117-1119)CAG>TAG	p.Q373*	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	373	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		CGGTAGACATCAGAGAGTTCA	0.453													153	259					0	0	0.000781405	0	0
ZNF274	10782	broad.mit.edu	37	19	58718408	58718409	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:58718408_58718409GG>AA	uc002qrq.1	+	7	1038_1039	c.579_580GG>AA	c.(577-582)AAGGCA>AAAACA	p.A194T	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Missense_Mutation_p.A162T|ZNF274_uc002qrs.1_Missense_Mutation_p.A89T|ZNF274_uc010eum.1_5'UTR	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	194	SCAN box.				viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TACAGCCTAAGGCACGCTCCAA	0.619													66	106					0	0	6.4e-05	0	0
SLC27A5	10998	broad.mit.edu	37	19	59010864	59010864	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:59010864G>A	uc002qtc.2	-	7	1772	c.1662C>T	c.(1660-1662)ACC>ACT	p.T554T	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	554	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		CGGACCGGAAGGTGTCCCCGA	0.657													187	355					0	0	0.000781405	0	0
MYT1L	23040	broad.mit.edu	37	2	1983293	1983293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:1983293C>T	uc002qxe.2	-	7	916	c.89G>A	c.(88-90)AGC>AAC	p.S30N	MYT1L_uc002qxd.2_Missense_Mutation_p.S30N	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	30	C2HC-type 1.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGGCACTAACCTGAACAGCTC	0.458													55	142					0	0	0.000781405	0	0
ADI1	55256	broad.mit.edu	37	2	3504605	3504605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:3504605G>A	uc002qxp.3	-	3	492	c.400C>T	c.(400-402)CGC>TGC	p.R134C	ADI1_uc010yiq.1_RNA	NM_018269	NP_060739	Q9BV57	MTND_HUMAN	acireductone dioxygenase 1	134					L-methionine salvage from methylthioadenosine	cytoplasm|nucleus|plasma membrane	acireductone dioxygenase (Ni2+-requiring) activity|metal ion binding|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0729)|Epithelial(75;0.173)|all cancers(51;0.228)		ACCGTGAAGCGGTGATAGATC	0.632													137	240					0	0	0.000781405	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871126	8871126	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:8871126G>A	uc002qzc.2	-	30	5222	c.5040C>T	c.(5038-5040)CCC>CCT	p.P1680P	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Silent_p.P1581P|KIDINS220_uc002qzb.2_Silent_p.P534P	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1680	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TCACGGTGCTGGGAGTTCGGT	0.483													138	341					0	0	0.000781405	0	0
KIDINS220	57498	broad.mit.edu	37	2	8873729	8873729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:8873729G>A	uc002qzc.2	-	29	4080	c.3898C>T	c.(3898-3900)CCG>TCG	p.P1300S	KIDINS220_uc010yiv.1_Missense_Mutation_p.P1009S|KIDINS220_uc002qzd.2_Missense_Mutation_p.P1201S|KIDINS220_uc002qzb.2_Missense_Mutation_p.P154S	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1300	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TCACCGTGCGGGGCTGGGCCA	0.567													147	244					0	0	0.000781405	0	0
GRHL1	29841	broad.mit.edu	37	2	10101458	10101458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:10101458C>T	uc002raa.2	+	4	733	c.562C>T	c.(562-564)CGG>TGG	p.R188W	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.I24I|GRHL1_uc010yjb.1_Missense_Mutation_p.R37W	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	188					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		GGTTTTCGATCGGAATCTCAA	0.547													189	320					0	0	0.000781405	0	0
GREB1	9687	broad.mit.edu	37	2	11758670	11758670	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:11758670C>T	uc002rbk.1	+	22	3969	c.3669C>T	c.(3667-3669)TCC>TCT	p.S1223S	GREB1_uc002rbp.1_Silent_p.S221S	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1223	Ser-rich.					integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CCCAGCTGTCCTCCTCCTCGG	0.711													125	177					0	0	0.000781405	0	0
LPIN1	23175	broad.mit.edu	37	2	11913802	11913802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:11913802C>T	uc010yjn.1	+	6	927	c.653C>T	c.(652-654)TCC>TTC	p.S218F	LPIN1_uc010yjm.1_Missense_Mutation_p.S267F|LPIN1_uc002rbt.2_Missense_Mutation_p.S218F|LPIN1_uc002rbs.2_Missense_Mutation_p.S218F	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	218					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GAAAACCTCTCCCTGGCTGTG	0.443													332	574					0	0	0.000781405	0	0
LPIN1	23175	broad.mit.edu	37	2	11922502	11922502	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:11922502T>A	uc010yjn.1	+	8	1299	c.1025T>A	c.(1024-1026)TTT>TAT	p.F342Y	LPIN1_uc010yjm.1_Missense_Mutation_p.F427Y|LPIN1_uc002rbt.2_Missense_Mutation_p.F342Y|LPIN1_uc002rbs.2_Missense_Mutation_p.F378Y	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	342					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GAAATGCAGTTTGTGAATGAA	0.527													260	331					0	0	0.000781405	0	0
NBAS	51594	broad.mit.edu	37	2	15307436	15307436	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:15307436G>A	uc002rcc.1	-	52	6878	c.6852C>T	c.(6850-6852)TCC>TCT	p.S2284S	NBAS_uc002rcb.1_Silent_p.S124S|NBAS_uc010exl.1_Silent_p.S1356S|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2284										ovary(2)|liver(1)|skin(1)	4						GGTCACAATTGGAATCATTCA	0.527													37	49					0	0	0.000437636	0	0
NBAS	51594	broad.mit.edu	37	2	15319169	15319169	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:15319169C>A	uc002rcc.1	-	51	6809	c.6783G>T	c.(6781-6783)GAG>GAT	p.E2261D	NBAS_uc002rcb.1_Missense_Mutation_p.E101D|NBAS_uc010exl.1_Missense_Mutation_p.E1333D|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2261										ovary(2)|liver(1)|skin(1)	4						CATCTCGGCTCTCGAGGAGAA	0.488													35	42					6.90743e-12	4.8321e-11	0.000692331	1	0
HADHB	3032	broad.mit.edu	37	2	26477303	26477304	+	Nonsense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:26477303_26477304AG>TA	uc002rgz.2	+	3	321_322	c.70_71AG>TA	c.(70-72)AGA>TAA	p.R24*	HADHB_uc010yku.1_RNA|HADHB_uc010ykv.1_5'UTR|HADHB_uc010ykw.1_Nonsense_Mutation_p.R24*|HADHB_uc002rha.2_Nonsense_Mutation_p.R24*	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	24					fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCAGCCATAAGACCTCTGAGC	0.332													69	174					0	0	6.4e-05	0	0
OTOF	9381	broad.mit.edu	37	2	26706495	26706496	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:26706495_26706496CC>TT	uc002rhk.2	-	13	1353_1354	c.1226_1227GG>AA	c.(1225-1227)GGG>GAA	p.G409E		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	409	Cytoplasmic (Potential).|C2 2.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGGGGGGCACCCCCTCGGGGAG	0.604													84	174					0	0	6.4e-05	0	0
EMILIN1	11117	broad.mit.edu	37	2	27306762	27306762	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:27306762C>T	uc002rii.3	+	4	2751	c.2323C>T	c.(2323-2325)CTG>TTG	p.L775L	EMILIN1_uc002rik.3_Silent_p.L5L|KHK_uc002ril.2_5'Flank|KHK_uc002rim.2_5'Flank|KHK_uc002rin.2_5'Flank|KHK_uc002rio.2_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	775					cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCAGGCAGCCCTGCTGGAGAA	0.692													136	165					0	0	0.000781405	0	0
CAD	790	broad.mit.edu	37	2	27449415	27449415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:27449415C>T	uc002rji.2	+	14	2216	c.2054C>T	c.(2053-2055)GCC>GTC	p.A685V	CAD_uc010eyw.2_Missense_Mutation_p.A622V	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	685	CPSase (Carbamoyl-phosphate synthase).|CPSase A.|ATP-grasp 1.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GAAGTGAATGCCAGGCTCTCT	0.507													183	327					0	0	0.000781405	0	0
FAM179A	165186	broad.mit.edu	37	2	29240746	29240746	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:29240746G>A	uc010ezl.2	+	10	1635	c.1284G>A	c.(1282-1284)AGG>AGA	p.R428R	FAM179A_uc010ymm.1_Intron|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	428							binding			ovary(3)|skin(1)	4						TCATCCTGAGGAAGTGGGCCA	0.692													67	118					0	0	0.000781405	0	0
ALK	238	broad.mit.edu	37	2	29450459	29450459	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:29450459C>A	uc002rmy.2	-	17	3802	c.2895G>T	c.(2893-2895)CTG>CTT	p.L965L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	965	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CTGGGGTGTACAGGATGCCCA	0.522			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				6	541					0.000274275	0.00189323	0.000274275	1	0
CAPN13	92291	broad.mit.edu	37	2	30966439	30966439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:30966439G>A	uc002rnn.2	-	12	1431	c.1255C>T	c.(1255-1257)CGG>TGG	p.R419W	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	419					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AATTTCTCCCGGAACCGCTGG	0.473													50	78					0	0	0.000781405	0	0
XDH	7498	broad.mit.edu	37	2	31591480	31591480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:31591480G>A	uc002rnv.1	-	19	2106	c.2027C>T	c.(2026-2028)CCG>CTG	p.P676L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	676					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGTGTGTTCCGGGGTGTCAGC	0.423													70	134					0	0	0.000781405	0	0
XDH	7498	broad.mit.edu	37	2	31604542	31604542	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:31604542G>A	uc002rnv.1	-	12	1168	c.1089C>T	c.(1087-1089)CCC>CCT	p.P363P		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	363	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CCATGAACACGGGGTTGAGGT	0.577													19	31					0	0	0.000229342	0	0
NLRC4	58484	broad.mit.edu	37	2	32475921	32475921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:32475921G>A	uc002roi.2	-	4	1258	c.1012C>T	c.(1012-1014)CCT>TCT	p.P338S	NLRC4_uc002roj.1_Missense_Mutation_p.P338S|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	338	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					ACAAAGAGAGGGGTCTTCATG	0.478													48	63					0	0	0.000781405	0	0
BIRC6	57448	broad.mit.edu	37	2	32715118	32715118	+	Silent	SNP	T	C	C	rs149077460		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:32715118T>C	uc010ezu.2	+	43	8240	c.8106T>C	c.(8104-8106)ACT>ACC	p.T2702T		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2702					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CATCAATAACTAGCTTTCTCA	0.348													81	89					0	0	0.000781405	0	0
VIT	5212	broad.mit.edu	37	2	36982174	36982174	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:36982174G>A	uc002rpl.2	+	5	607	c.386G>A	c.(385-387)TGG>TAG	p.W129*	VIT_uc002rpk.2_Nonsense_Mutation_p.W122*|VIT_uc010ynf.1_Nonsense_Mutation_p.W122*|VIT_uc002rpm.2_Nonsense_Mutation_p.W122*|VIT_uc010ezv.2_Nonsense_Mutation_p.W122*|VIT_uc010ezw.2_Nonsense_Mutation_p.W122*	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	129	LCCL.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CTACCACGATGGAGAGAATCC	0.438													10	28					0	0	0.000442599	0	0
STRN	6801	broad.mit.edu	37	2	37105106	37105106	+	Silent	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:37105106A>T	uc002rpn.2	-	10	1260	c.1251T>A	c.(1249-1251)CTT>CTA	p.L417L	STRN_uc010ezx.2_Silent_p.L380L	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	417					dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				GTTCACTTTCAAGGGCTTCAT	0.413													224	387					0	0	0.000781405	0	0
GALM	130589	broad.mit.edu	37	2	38903167	38903167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:38903167G>A	uc002rqy.2	+	2	556	c.304G>A	c.(304-306)GAA>AAA	p.E102K		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	102					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				CATTAACAAGGAACCCAACAG	0.498													97	175					0	0	0.000781405	0	0
DHX57	90957	broad.mit.edu	37	2	39095502	39095502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:39095502C>T	uc002rrf.2	-	2	145	c.46G>A	c.(46-48)GGA>AGA	p.G16R	DHX57_uc002rre.2_5'Flank|DHX57_uc002rrg.2_Missense_Mutation_p.G16R	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	16	Gly-rich.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GACCCTTTTCCACCTCCTTTG	0.343													198	444					0	0	0.000781405	0	0
PKDCC	91461	broad.mit.edu	37	2	42284374	42284374	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:42284374C>T	uc002rsg.2	+	6	1415	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	412	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						ACCAGTGTATCCCAGACAGCA	0.547													268	454					0	0	0.000781405	0	0
NRXN1	9378	broad.mit.edu	37	2	50699459	50699459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:50699459C>T	uc010fbq.2	-	16	4818	c.3341G>A	c.(3340-3342)GGA>GAA	p.G1114E	NRXN1_uc002rxb.3_Missense_Mutation_p.G746E|NRXN1_uc002rxe.3_Missense_Mutation_p.G1074E|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTCGATCTGTCCGTTGCAGAA	0.438													20	32					0	0	0.000175454	0	0
NRXN1	9378	broad.mit.edu	37	2	50780084	50780084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:50780084C>T	uc010fbq.2	-	9	2997	c.1520G>A	c.(1519-1521)GGA>GAA	p.G507E	NRXN1_uc002rxb.3_Missense_Mutation_p.G139E|NRXN1_uc002rxe.3_Missense_Mutation_p.G467E|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TGCCACCACTCCATGGATCTT	0.408													159	245					0	0	0.000781405	0	0
KIAA1841	84542	broad.mit.edu	37	2	61308617	61308617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:61308617C>T	uc002saw.3	+	7	1004	c.701C>T	c.(700-702)TCT>TTT	p.S234F	KIAA1841_uc002sax.3_Missense_Mutation_p.S88F|KIAA1841_uc002say.2_Missense_Mutation_p.S234F|KIAA1841_uc002sav.3_Missense_Mutation_p.S234F	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	234											0			Epithelial(17;0.193)			ATTCTTATTTCTTCGGAGTTT	0.318													74	154					0	0	0.000781405	0	0
AHSA2	130872	broad.mit.edu	37	2	61413791	61413791	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:61413791T>A	uc002sbc.1	+	6	1870	c.284T>A	c.(283-285)CTA>CAA	p.L95Q	AHSA2_uc002sbb.1_RNA	NM_152392	NP_689605	Q719I0	AHSA2_HUMAN	AHA1, activator of heat shock 90kDa protein	257					response to stress	cytoplasm	ATPase activator activity|chaperone binding			breast(1)	1			Epithelial(17;0.0994)			GTGCCTACTCTAGGGCAAACA	0.338													87	145					0	0	0.000781405	0	0
DYSF	8291	broad.mit.edu	37	2	71780260	71780260	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:71780260C>T	uc002sie.2	+	20	2248	c.1872C>T	c.(1870-1872)TTC>TTT	p.F624F	DYSF_uc010feg.2_Silent_p.F655F|DYSF_uc010feh.2_Silent_p.F610F|DYSF_uc002sig.3_Silent_p.F610F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.F624F|DYSF_uc010fef.2_Silent_p.F641F|DYSF_uc010fei.2_Silent_p.F641F|DYSF_uc010fek.2_Silent_p.F642F|DYSF_uc010fej.2_Silent_p.F611F|DYSF_uc010fel.2_Silent_p.F611F|DYSF_uc010feo.2_Silent_p.F656F|DYSF_uc010fem.2_Silent_p.F625F|DYSF_uc010fen.2_Silent_p.F642F|DYSF_uc002sif.2_Silent_p.F625F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	624	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGAACAAGTTCGACATGACCT	0.577													228	408					0	0	0.000781405	0	0
DYSF	8291	broad.mit.edu	37	2	71886052	71886052	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:71886052C>T	uc002sie.2	+	43	5059	c.4683C>T	c.(4681-4683)CCC>CCT	p.P1561P	DYSF_uc010feg.2_Silent_p.P1592P|DYSF_uc010feh.2_Silent_p.P1568P|DYSF_uc002sig.3_Silent_p.P1547P|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.P1582P|DYSF_uc010fef.2_Silent_p.P1599P|DYSF_uc010fei.2_Silent_p.P1578P|DYSF_uc010fek.2_Silent_p.P1579P|DYSF_uc010fej.2_Silent_p.P1569P|DYSF_uc010fel.2_Silent_p.P1548P|DYSF_uc010feo.2_Silent_p.P1593P|DYSF_uc010fem.2_Silent_p.P1583P|DYSF_uc010fen.2_Silent_p.P1600P|DYSF_uc002sif.2_Silent_p.P1562P|DYSF_uc010yqy.1_Silent_p.P442P|DYSF_uc010yqz.1_Silent_p.P322P	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1561	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CAGCCATCCCCATGCCCCCAA	0.493													90	173					0	0	0.000781405	0	0
ALMS1	7840	broad.mit.edu	37	2	73675293	73675293	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:73675293C>T	uc002sje.1	+	10	1753	c.1642C>T	c.(1642-1644)CTA>TTA	p.L548L	ALMS1_uc002sjf.1_Silent_p.L504L|ALMS1_uc002sjg.2_5'UTR|ALMS1_uc002sjh.1_5'UTR	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	546	1.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AGATACTCATCTAACTGAAGA	0.453													14	28					0	0	0.000308642	0	0
C2orf78	388960	broad.mit.edu	37	2	74042650	74042650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:74042650G>A	uc002sjr.1	+	3	1421	c.1300G>A	c.(1300-1302)GGG>AGG	p.G434R		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	434										ovary(2)	2						ATTTGAAAATGGGATTGAGTC	0.463													171	248					0	0	0.000781405	0	0
DCTN1	1639	broad.mit.edu	37	2	74598296	74598296	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:74598296T>C	uc002skx.2	-	9	964	c.653A>G	c.(652-654)GAG>GGG	p.E218G	DCTN1_uc002skv.2_Missense_Mutation_p.E84G|DCTN1_uc002sku.2_Missense_Mutation_p.E84G|DCTN1_uc002skw.1_Missense_Mutation_p.E194G|DCTN1_uc010ffd.2_Missense_Mutation_p.E198G|DCTN1_uc002sky.2_Missense_Mutation_p.E181G	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	218	Potential.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						CCTTAGTCCCTCCTCCTCCTG	0.547													6	945					0	0	0.000602214	0	0
C2orf65	130951	broad.mit.edu	37	2	74842098	74842098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:74842098G>A	uc002smy.2	-	3	536	c.419C>T	c.(418-420)TCC>TTC	p.S140F	C2orf65_uc010ysa.1_Missense_Mutation_p.S140F|C2orf65_uc002smz.2_Missense_Mutation_p.S140F	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	140					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						TACCTCCAGGGAGGTATAGGT	0.468													66	98					0	0	0.000781405	0	0
C2orf3	6936	broad.mit.edu	37	2	75929358	75929358	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:75929358G>A	uc002sno.2	-	3	716	c.586C>T	c.(586-588)CAA>TAA	p.Q196*	C2orf3_uc010ffs.2_5'Flank|C2orf3_uc002snn.2_Nonsense_Mutation_p.Q27*|C2orf3_uc010fft.2_5'UTR|C2orf3_uc002snp.3_Nonsense_Mutation_p.Q196*	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	196					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CTAAGTGTTTGAGGTCTTAGA	0.373													207	303					0	0	0.000781405	0	0
C2orf3	6936	broad.mit.edu	37	2	75933774	75933774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:75933774G>A	uc002sno.2	-	2	399	c.269C>T	c.(268-270)TCC>TTC	p.S90F	C2orf3_uc002snn.2_5'UTR|C2orf3_uc010fft.2_5'UTR|C2orf3_uc002snp.3_Missense_Mutation_p.S90F	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	90					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						AAGGGTTCTGGATTCTAACAG	0.343													202	333					0	0	0.000781405	0	0
REG1B	5968	broad.mit.edu	37	2	79313493	79313493	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:79313493C>T	uc002sny.2	-	4	433	c.321G>A	c.(319-321)AAG>AAA	p.K107K	REG1B_uc010ffv.1_Silent_p.K107K|REG1B_uc010ffw.2_3'UTR	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	107	C-type lectin.				cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						GCAGACTGACCTTTTTTGGGT	0.483													7	22					0	0	0.000274275	0	0
GGCX	2677	broad.mit.edu	37	2	85778065	85778065	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:85778065T>C	uc002sps.2	-	13	1977	c.1871A>G	c.(1870-1872)AAG>AGG	p.K624R	GGCX_uc010yss.1_Missense_Mutation_p.K440R|GGCX_uc010yst.1_Missense_Mutation_p.K567R	NM_000821	NP_000812	P38435	VKGC_HUMAN	gamma-glutamyl carboxylase isoform 1	624	Lumenal (Potential).				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification	endoplasmic reticulum membrane|integral to membrane|membrane fraction	gamma-glutamyl carboxylase activity			ovary(1)	1					Anisindione(DB01125)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Drotrecogin alfa(DB00055)|L-Glutamic Acid(DB00142)|Menadione(DB00170)|Phytonadione(DB01022)	ATTCTCCACCTTTTCCTTTAA	0.438													4	717					0	0	0.00116845	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88874621	88874621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:88874621G>A	uc002stc.3	-	13	2582	c.2380C>T	c.(2380-2382)CCT>TCT	p.P794S		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	794	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CTTACATAAGGAGAAGCTTCA	0.443													170	240					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	2	90199113	90199113	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:90199113G>A	uc010fhm.2	+	24		c.3244G>A								Parts of antibodies, mostly variable regions.																		ATCTGGGACAGATTTCACTCT	0.502													46	94					0	0	0.000781405	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522727	95522728	+	RNA	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:95522727_95522728CG>AT	uc010fhp.2	-	1		c.93_94CG>AT				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CTGCTTGTCCCGGGCGTCCAGG	0.733													11	496					0	0	6.4e-05	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522815	95522815	+	RNA	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:95522815A>G	uc010fhp.2	-	1		c.6T>C				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATCTTCTGCAATTCGGAGTCC	0.652													6	794					0	0	0.000673444	0	0
TEKT4	150483	broad.mit.edu	37	2	95537595	95537595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:95537595G>A	uc002stw.1	+	1	364	c.271G>A	c.(271-273)GTG>ATG	p.V91M	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	91					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						CACGCGCACAGTGGGCGAGCG	0.687													55	126					0	0	0.000781405	0	0
ZAP70	7535	broad.mit.edu	37	2	98354343	98354344	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:98354343_98354344GG>AA	uc002syd.1	+	12	1813_1814	c.1606_1607GG>AA	c.(1606-1608)GGC>AAC	p.G536N	ZAP70_uc002sye.1_Missense_Mutation_p.G426N|ZAP70_uc002syf.1_Missense_Mutation_p.G229N	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	536	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						CTTGTCCTACGGCCAGAAGCCC	0.629													351	517					0	0	6.4e-05	0	0
VWA3B	200403	broad.mit.edu	37	2	98920243	98920243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:98920243C>T	uc002syo.2	+	26	3763	c.3499C>T	c.(3499-3501)CCA>TCA	p.P1167S	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.P824S|VWA3B_uc002syp.1_Missense_Mutation_p.P559S|VWA3B_uc002syq.1_Missense_Mutation_p.P443S|VWA3B_uc002syr.1_Missense_Mutation_p.P484S|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1167										ovary(3)|large_intestine(2)|skin(1)	6						AAAGTCACCCCCAATTCCTGA	0.373													37	80					0	0	0.000374591	0	0
MAP4K4	9448	broad.mit.edu	37	2	102407207	102407207	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:102407207T>A	uc002tbg.2	+	3	204	c.149T>A	c.(148-150)TTG>TAG	p.L50*	MAP4K4_uc002tbc.2_Nonsense_Mutation_p.L50*|MAP4K4_uc002tbd.2_Nonsense_Mutation_p.L50*|MAP4K4_uc002tbe.2_Nonsense_Mutation_p.L50*|MAP4K4_uc002tbf.2_Nonsense_Mutation_p.L50*|MAP4K4_uc010yvy.1_Nonsense_Mutation_p.L50*|MAP4K4_uc002tbh.2_Nonsense_Mutation_p.L50*|MAP4K4_uc002tbi.2_Nonsense_Mutation_p.L50*|MAP4K4_uc010fiw.1_5'UTR	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	50	Protein kinase.				intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						ACGGGTCAGTTGGCAGCCATC	0.363													4	5					0	0	0.00024832	0	0
IL1R1	3554	broad.mit.edu	37	2	102792979	102792980	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:102792979_102792980GG>AA	uc002tbq.2	+	12	1788_1789	c.1470_1471GG>AA	c.(1468-1473)CTGGAG>CTAAAG	p.E491K	IL1R1_uc010fix.2_Missense_Mutation_p.E460K|IL1R1_uc002tbr.2_Missense_Mutation_p.E491K	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	491	TIR.|Cytoplasmic (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	TGCTTGAGCTGGAGAAAATCCA	0.441													45	79					0	0	6.4e-05	0	0
IL1RL1	9173	broad.mit.edu	37	2	102965684	102965684	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:102965684G>A	uc002tbu.1	+	10	1534	c.1263G>A	c.(1261-1263)GGG>GGA	p.G421G	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	421	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GCATTTATGGGAGAGATATGC	0.418													98	150					0	0	0.000781405	0	0
TMEM182	130827	broad.mit.edu	37	2	103414377	103414377	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:103414377C>T	uc010fjb.2	+	4	574	c.387C>T	c.(385-387)ATC>ATT	p.I129I	TMEM182_uc002tcc.3_Silent_p.I86I|TMEM182_uc002tcd.3_Silent_p.I33I|TMEM182_uc010ywe.1_RNA	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	129	Helical; (Potential).					integral to membrane					0						CTGTAGTCATCGCAAGCTTTT	0.498													131	207					0	0	0.000781405	0	0
PLGLA	285189	broad.mit.edu	37	2	107007411	107007411	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:107007411G>A	uc002tdp.2	+	3		c.260G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						ACAGAGGGACGATGTCCAAAA	0.448													10	10					0	0	0.000673444	0	0
SULT1C4	27233	broad.mit.edu	37	2	108994820	108994820	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:108994820T>C	uc002tea.1	+	1	400	c.27T>C	c.(25-27)TTT>TTC	p.F9F	SULT1C4_uc002tdz.2_Silent_p.F9F|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Silent_p.F9F	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	9					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TGGAGGATTTTACATTTGATG	0.438													132	185					0	0	0.000781405	0	0
EDAR	10913	broad.mit.edu	37	2	109545771	109545771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:109545771G>A	uc002teq.3	-	4	670	c.239C>T	c.(238-240)TCC>TTC	p.S80F	EDAR_uc010fjn.2_Missense_Mutation_p.S80F|EDAR_uc010yws.1_Missense_Mutation_p.S80F	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	80	TNFR-Cys 2.|Extracellular (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GCCTCCTTTGGAAAACTTCTC	0.592													143	257					0	0	0.000781405	0	0
BCL2L11	10018	broad.mit.edu	37	2	111881413	111881414	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:111881413_111881414GG>AA	uc002tgv.1	+	2	379_380	c.91_92GG>AA	c.(91-93)GGG>AAG	p.G31K	BCL2L11_uc002tgt.1_Missense_Mutation_p.G31K|BCL2L11_uc002tgu.1_Missense_Mutation_p.G31K|BCL2L11_uc002tgw.1_RNA|BCL2L11_uc002tgx.1_RNA|BCL2L11_uc010fkd.1_RNA|BCL2L11_uc002tgy.1_RNA|BCL2L11_uc002tgz.1_Missense_Mutation_p.G31K|BCL2L11_uc010fke.1_RNA|BCL2L11_uc002tha.1_Missense_Mutation_p.G31K|BCL2L11_uc002thb.1_RNA|BCL2L11_uc002thc.1_RNA|BCL2L11_uc002thd.1_Missense_Mutation_p.G31K	NM_138621	NP_619527	O43521	B2L11_HUMAN	BCL2-like 11 isoform 1	31					activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	cytosol|endomembrane system|mitochondrial outer membrane|plasma membrane	protein binding|protein binding				0						GCTCAGACCTGGGGCCCCTACC	0.584													208	374					0	0	6.4e-05	0	0
MERTK	10461	broad.mit.edu	37	2	112705031	112705031	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:112705031A>G	uc002thk.1	+	4	766	c.644A>G	c.(643-645)AAC>AGC	p.N215S	MERTK_uc002thl.1_Missense_Mutation_p.N39S	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	215	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						ACAGCCTTCAACCTCACCTGT	0.498													33	41					0	0	0.000409698	0	0
WASH2P	375260	broad.mit.edu	37	2	114355129	114355129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:114355129G>A	uc002tkh.2	+	4	564	c.506G>A	c.(505-507)CGC>CAC	p.R169H	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA|WASH2P_uc010fkz.1_RNA|WASH2P_uc002tkf.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						GAGTCCATCCGCCAAGCTGGG	0.522													8	190					0	0	0.000566183	0	0
DPP10	57628	broad.mit.edu	37	2	116497419	116497419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:116497419C>T	uc002tla.1	+	9	1259	c.802C>T	c.(802-804)CGG>TGG	p.R268W	DPP10_uc002tlb.1_Missense_Mutation_p.R218W|DPP10_uc002tlc.1_Missense_Mutation_p.R264W|DPP10_uc002tle.2_Missense_Mutation_p.R272W|DPP10_uc002tlf.1_Missense_Mutation_p.R261W	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	268	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GGTTATCCCTCGGTTTACTGG	0.458													35	38					0	0	0.000814825	0	0
MARCO	8685	broad.mit.edu	37	2	119735476	119735476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:119735476G>A	uc002tln.1	+	8	863	c.731G>A	c.(730-732)GGA>GAA	p.G244E	MARCO_uc010yyf.1_Missense_Mutation_p.G166E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	244	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGGAAACTGGAACTAAGGGA	0.602													9	29					0	0	0.000673444	0	0
STEAP3	55240	broad.mit.edu	37	2	120005746	120005746	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:120005746C>T	uc002tlp.2	+	4	1141	c.984C>T	c.(982-984)GCC>GCT	p.A328A	STEAP3_uc002tlq.2_Silent_p.A338A|STEAP3_uc002tlr.2_Silent_p.A328A|STEAP3_uc010fle.2_Silent_p.A328A	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	328	Ferric oxidoreductase.|Vesicular (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						TGCGCCGCGCCCACCGCTACG	0.652													130	255					0	0	0.000781405	0	0
GLI2	2736	broad.mit.edu	37	2	121748112	121748112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:121748112C>T	uc010flp.2	+	13	4652	c.4622C>T	c.(4621-4623)TCC>TTC	p.S1541F	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.S1213F|GLI2_uc002tmu.3_Missense_Mutation_p.S1196F	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1541					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TCCCAGAACTCCTCCCGCCTC	0.612													295	490					0	0	0.000781405	0	0
CLASP1	23332	broad.mit.edu	37	2	122104659	122104659	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:122104659G>A	uc002tnc.2	-	38	4875	c.4485C>T	c.(4483-4485)ATC>ATT	p.I1495I	CLASP1_uc010yyv.1_Silent_p.I541I|CLASP1_uc002tmz.2_Silent_p.I580I|CLASP1_uc002tna.2_Silent_p.I541I|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Silent_p.I1436I|CLASP1_uc010yza.1_Silent_p.I1428I|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Silent_p.I331I	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1495	Localization to kinetochores.|Interaction with PHLDB2 and RSN.|Interaction with CLIP2 (By similarity).|HEAT 7.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					GGTCTTCTCCGATTACGGAAT	0.502													28	45					0	0	0.000339439	0	0
MYO7B	4648	broad.mit.edu	37	2	128366430	128366430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:128366430G>A	uc002top.2	+	22	2844	c.2791G>A	c.(2791-2793)GGC>AGC	p.G931S		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	931						apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GGGCCAGGAGGGCCAGGCCTC	0.627													72	130					0	0	0.000781405	0	0
MYO7B	4648	broad.mit.edu	37	2	128381890	128381890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:128381890G>A	uc002top.2	+	29	4017	c.3964G>A	c.(3964-3966)GAG>AAG	p.E1322K	MYO7B_uc002toq.1_Missense_Mutation_p.E175K|MYO7B_uc002tor.1_Missense_Mutation_p.E175K	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1322	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GTACAGCTTCGAGAAGGTGAG	0.592													30	41					0	0	0.000279167	0	0
WDR33	55339	broad.mit.edu	37	2	128467377	128467377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:128467377C>T	uc002tpg.1	-	19	3545	c.3362G>A	c.(3361-3363)AGG>AAG	p.R1121K		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1121					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		AAAACCATCCCTTCCTCTGGG	0.557													335	578					0	0	0.000781405	0	0
CCDC74B	91409	broad.mit.edu	37	2	130898785	130898785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:130898785G>A	uc002tqm.1	-	4	691	c.629C>T	c.(628-630)CCC>CTC	p.P210L	CCDC74B_uc010yzw.1_Missense_Mutation_p.P312L|CCDC74B_uc002tqn.1_Missense_Mutation_p.P144L	NM_207310	NP_997193	Q96LY2	CC74B_HUMAN	coiled-coil domain containing 74B	210											0	Colorectal(110;0.1)					GTGAAGTAGGGGCTCCTCTTC	0.602													157	504					0	0	0.000781405	0	0
CCDC74A	90557	broad.mit.edu	37	2	132289321	132289321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:132289321C>T	uc002tta.2	+	4	681	c.629C>T	c.(628-630)CCC>CTC	p.P210L	CCDC74A_uc002ttb.2_Missense_Mutation_p.P144L	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	210										skin(1)	1						GAAGAGGAGCCCCTACTTCAC	0.592													82	809					0	0	0.000781405	0	0
LRP1B	53353	broad.mit.edu	37	2	141128855	141128855	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:141128855C>T	uc002tvj.1	-	70	11741	c.10769_splice	c.e70-1	p.A3590_splice		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B						protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTAGGAGAAGCTGAATACAAT	0.284										TSP Lung(27;0.18)			4	6					0	0	0.000602214	0	0
NEB	4703	broad.mit.edu	37	2	152424922	152424923	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:152424922_152424923GG>AA	uc010fnx.2	-	84	12731_12732	c.12540_12541CC>TT	c.(12538-12543)TACCGG>TATTGG	p.R4181W	NEB_uc002txr.2_Missense_Mutation_p.R604W	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4181	Nebulin 114.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAGTCTTTCCGGTATTTAATCT	0.441													19	30					0	0	6.4e-05	0	0
NEB	4703	broad.mit.edu	37	2	152474840	152474840	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:152474840C>T	uc010fnx.2	-	70	10487	c.10296G>A	c.(10294-10296)ACG>ACA	p.T3432T		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3432	Nebulin 94.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCGGAGTGTCCGTTATACTGG	0.423													40	75					0	0	0.000437636	0	0
NEB	4703	broad.mit.edu	37	2	152522801	152522801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:152522801G>A	uc010fnx.2	-	41	5025	c.4834C>T	c.(4834-4836)CGT>TGT	p.R1612C		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1612	Nebulin 41.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTGTACTCACGATCAGACTGG	0.473													118	199					0	0	0.000781405	0	0
GALNT13	114805	broad.mit.edu	37	2	154996960	154996960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:154996960C>T	uc002tyr.3	+	4	820	c.253C>T	c.(253-255)CTT>TTT	p.L85F	GALNT13_uc002tyt.3_Missense_Mutation_p.L85F|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	85	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TCAGTTTAACCTTATGGCCAG	0.348													20	35					0	0	0.000175454	0	0
GALNT13	114805	broad.mit.edu	37	2	155265592	155265592	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:155265592C>T	uc002tyr.3	+	11	1960	c.1393C>T	c.(1393-1395)CAG>TAG	p.Q465*	GALNT13_uc002tyt.3_Nonsense_Mutation_p.Q465*|GALNT13_uc010foc.1_Nonsense_Mutation_p.Q284*|GALNT13_uc010fod.2_Nonsense_Mutation_p.Q218*	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	465	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GGGAGGAAATCAGGTAAACTC	0.358													16	47					0	0	0.00121646	0	0
KCNJ3	3760	broad.mit.edu	37	2	155566185	155566185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:155566185G>A	uc002tyv.1	+	2	968	c.773G>A	c.(772-774)GGG>GAG	p.G258E	KCNJ3_uc010zce.1_Intron	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	258	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TTTAGTACAGGGGCAGATCAA	0.473													123	222					0	0	0.000781405	0	0
PKP4	8502	broad.mit.edu	37	2	159519537	159519537	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:159519537C>T	uc002tzv.2	+	14	2600	c.2340C>T	c.(2338-2340)GAC>GAT	p.D780D	PKP4_uc002tzt.1_Silent_p.D632D|PKP4_uc002tzu.2_Silent_p.D780D|PKP4_uc002tzw.2_Silent_p.D780D|PKP4_uc002tzx.2_Silent_p.D437D|PKP4_uc002tzy.1_Silent_p.D438D|PKP4_uc002uaa.2_Silent_p.D632D|uc002uab.1_Intron|PKP4_uc002uac.2_5'UTR	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	780					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						CCAGCAAAGACTCTGAGCCAA	0.463										HNSCC(62;0.18)			41	59					0	0	0.000437636	0	0
LY75	4065	broad.mit.edu	37	2	160688299	160688299	+	Splice_Site	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:160688299T>G	uc002ubc.3	-	28	3911	c.3842_splice	c.e28-1	p.N1281_splice	LY75_uc002ubb.3_Splice_Site_p.N1281_splice|LY75_uc010fos.2_Splice_Site_p.N1281_splice	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor						endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		ATTTTGGATCTGTTGAATAAA	0.274													12	29					0	0	0.000978159	0	0
LY75	4065	broad.mit.edu	37	2	160706970	160706970	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:160706970T>C	uc002ubc.3	-	22	2961	c.2892A>G	c.(2890-2892)CTA>CTG	p.L964L	LY75_uc002ubb.3_Silent_p.L964L|LY75_uc010fos.2_Silent_p.L964L	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	964	Extracellular (Potential).|C-type lectin 6.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		GTTTGATCTTTAGAAAACACT	0.433													12	23					0	0	0.000151284	0	0
PLA2R1	22925	broad.mit.edu	37	2	160901443	160901443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:160901443G>A	uc002ube.1	-	2	542	c.335C>T	c.(334-336)TCC>TTC	p.S112F	PLA2R1_uc010zcp.1_Missense_Mutation_p.S112F|PLA2R1_uc002ubf.2_Missense_Mutation_p.S112F	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	112	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						CCACCGTAAGGAAACGAGGGT	0.532													69	136					0	0	0.000781405	0	0
KCNH7	90134	broad.mit.edu	37	2	163393558	163393558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:163393558G>A	uc002uch.1	-	3	552	c.340C>T	c.(340-342)CCA>TCA	p.P114S	KCNH7_uc002uci.2_Missense_Mutation_p.P114S	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	114	Cytoplasmic (Potential).|PAC.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTTTTCACTGGAATTATGTGA	0.353													27	35					0	0	0.000720815	0	0
KCNH7	90134	broad.mit.edu	37	2	163693197	163693197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:163693197C>T	uc002uch.1	-	2	369	c.157G>A	c.(157-159)GGT>AGT	p.G53S	KCNH7_uc002uci.2_Missense_Mutation_p.G53S	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	53	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CTGGAGAAACCAGTCATCTCA	0.443													103	178					0	0	0.000781405	0	0
SCN2A	6326	broad.mit.edu	37	2	166170575	166170575	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:166170575A>G	uc002udc.2	+	10	1630	c.1340A>G	c.(1339-1341)CAG>CGG	p.Q447R	SCN2A_uc002udd.2_Missense_Mutation_p.Q447R|SCN2A_uc002ude.2_Missense_Mutation_p.Q447R	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	447	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GCTGAATTTCAGCAGATGCTC	0.398													3	91					0	0	6.4e-05	0	0
SCN1A	6323	broad.mit.edu	37	2	166897971	166897971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:166897971C>T	uc010zcz.1	-	13	2170	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	SCN1A_uc002udo.3_Missense_Mutation_p.E598K|SCN1A_uc010fpk.2_Missense_Mutation_p.E570K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	729						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGCCTGGATTCTTCAAGTTCT	0.308													39	68					0	0	0.000374591	0	0
SCN9A	6335	broad.mit.edu	37	2	167084228	167084228	+	Silent	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:167084228A>T	uc010fpl.2	-	23	4520	c.4179T>A	c.(4177-4179)ACT>ACA	p.T1393T	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1404	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATCCCTTAAAAGTTGCCTTTA	0.274													7	15					0	0	0.000274275	0	0
SCN7A	6332	broad.mit.edu	37	2	167304163	167304163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:167304163G>A	uc002udu.1	-	11	1473	c.1346C>T	c.(1345-1347)TCA>TTA	p.S449L	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	449					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CACATCCAATGATGTGTCTGT	0.363													23	37					0	0	0.000878237	0	0
SCN7A	6332	broad.mit.edu	37	2	167327137	167327137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:167327137G>A	uc002udu.1	-	6	779	c.652C>T	c.(652-654)CCT>TCT	p.P218S	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	218	Helical; Voltage-sensor; Name=S4 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TGATTTAAAGGAATAATTTTT	0.323													11	20					0	0	0.00136819	0	0
XIRP2	129446	broad.mit.edu	37	2	168067285	168067285	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:168067285A>C	uc002udx.2	+	3	621	c.603A>C	c.(601-603)GAA>GAC	p.E201D	XIRP2_uc010fpn.2_Missense_Mutation_p.E234D|XIRP2_uc010fpo.2_Missense_Mutation_p.E201D|XIRP2_uc010fpp.2_Missense_Mutation_p.E201D|XIRP2_uc002udy.2_Missense_Mutation_p.E26D|XIRP2_uc010fpq.2_5'UTR|XIRP2_uc010fpr.2_5'UTR	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	26					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATTTGCAGAAGACAGTGCTG	0.532													186	281					0	0	0.000781405	0	0
ABCB11	8647	broad.mit.edu	37	2	169792784	169792784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:169792784C>T	uc002ueo.1	-	22	2896	c.2770G>A	c.(2770-2772)GGA>AGA	p.G924R	ABCB11_uc010zda.1_Missense_Mutation_p.G366R|ABCB11_uc010zdb.1_Missense_Mutation_p.G400R	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	924	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GAGGCAAATCCTGTCAACATC	0.493													12	31					0	0	0.000219431	0	0
SCRN3	79634	broad.mit.edu	37	2	175264816	175264816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:175264816G>A	uc002uiq.2	+	3	414	c.326G>A	c.(325-327)GGA>GAA	p.G109E	SCRN3_uc010zen.1_Missense_Mutation_p.G102E|SCRN3_uc010zeo.1_5'UTR|SCRN3_uc002uir.1_RNA	NM_024583	NP_078859	Q0VDG4	SCRN3_HUMAN	secernin 3	109					proteolysis		dipeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.229)			GCACTATTAGGAATGGACCTT	0.358													217	441					0	0	0.000781405	0	0
NFE2L2	4780	broad.mit.edu	37	2	178095822	178095822	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:178095822C>T	uc002ulh.3	-	5	2064	c.1509G>A	c.(1507-1509)AGG>AGA	p.R503R	NFE2L2_uc002ulg.3_Silent_p.R487R|NFE2L2_uc010zfa.1_Silent_p.R480R|NFE2L2_uc002uli.3_Silent_p.R487R	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	503	Basic motif.				transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			TCTTACCCCTCCTACGTATAT	0.353			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			63	137					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179478906	179478906	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179478906C>T	uc010zfg.1	-	211	41738	c.41514G>A	c.(41512-41514)AAG>AAA	p.K13838K	uc002ump.1_RNA|TTN_uc010zfh.1_Silent_p.K7533K|TTN_uc010zfi.1_Silent_p.K7466K|TTN_uc010zfj.1_Silent_p.K7341K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14765							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTTGTATCCTTGACGGTGG	0.458													5	8					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179497112	179497112	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179497112G>A	uc010zfg.1	-	185	36029	c.35805C>T	c.(35803-35805)CTC>CTT	p.L11935L	TTN_uc010zfh.1_Silent_p.L5630L|TTN_uc010zfi.1_Silent_p.L5563L|TTN_uc010zfj.1_Silent_p.L5438L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12862							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTACATCTTTGAGAGGGGTGA	0.358													3	4					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179530116	179530116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179530116G>A	uc010zfk.1	-	10	1017	c.469C>T	c.(469-471)CCA>TCA	p.P157S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11366							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCATACGTGGAGTTTCTGGC	0.353													31	53					0	0	0.00058488	0	0
TTN	7273	broad.mit.edu	37	2	179594198	179594198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179594198C>T	uc010zfg.1	-	61	15177	c.14953G>A	c.(14953-14955)GAA>AAA	p.E4985K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1646K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5912							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAGTGACTTCAAACGGAGGT	0.443													17	25					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179595694	179595694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179595694C>T	uc010zfg.1	-	57	14190	c.13966G>A	c.(13966-13968)GAT>AAT	p.D4656N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1317N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5583							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCCAACATCATTTTGGACC	0.373													42	63					0	0	0.000509022	0	0
TTN	7273	broad.mit.edu	37	2	179596677	179596677	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179596677T>C	uc010zfg.1	-	55	13417	c.13193A>G	c.(13192-13194)GAA>GGA	p.E4398G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1059G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5325							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGCTTAAATTCCTTGGTAAA	0.443													17	16					0	0	0.000566183	0	0
TTN	7273	broad.mit.edu	37	2	179606352	179606352	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179606352A>T	uc010zfh.1	-	46	11319	c.11095T>A	c.(11095-11097)TTT>ATT	p.F3699I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.F3632I|TTN_uc010zfj.1_Missense_Mutation_p.F3507I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACCGTCAAAAACAAATTTG	0.408													18	25					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179610386	179610386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179610386C>T	uc002unb.2	-	46	16965	c.16741G>A	c.(16741-16743)GAA>AAA	p.E5581K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTCTCCTTCATCACTCTTT	0.393													4	11					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179664226	179664226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:179664226G>A	uc002und.2	-	6	1127	c.902C>T	c.(901-903)CCA>CTA	p.P301L	TTN_uc010zfg.1_Missense_Mutation_p.P301L|TTN_uc010zfh.1_Missense_Mutation_p.P301L|TTN_uc010zfi.1_Missense_Mutation_p.P301L|TTN_uc010zfj.1_Missense_Mutation_p.P301L|TTN_uc002unb.2_Missense_Mutation_p.P301L			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	301							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACCGGAGATGGGGTCGGTGC	0.463													20	44					0	0	0.00121646	0	0
SESTD1	91404	broad.mit.edu	37	2	180016105	180016105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:180016105G>A	uc002uni.3	-	6	533	c.383C>T	c.(382-384)TCC>TTC	p.S128F		NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	128	CRAL-TRIO.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTTGTTGGCGGACACTAAAAT	0.343													12	20					0	0	0.000219431	0	0
PDE1A	5136	broad.mit.edu	37	2	183129038	183129038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:183129038C>T	uc002uos.2	-	3	289	c.205G>A	c.(205-207)GAT>AAT	p.D69N	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.D69N|PDE1A_uc010zfq.1_Missense_Mutation_p.D69N|PDE1A_uc002uor.2_Missense_Mutation_p.D53N|PDE1A_uc002uov.1_RNA	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	69					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			CTTGTTTCATCGATATAAACT	0.388													8	42					0	0	0.000157383	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802647	185802647	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:185802647T>C	uc002uph.2	+	4	3118	c.2524T>C	c.(2524-2526)TTA>CTA	p.L842L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	842						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAATTCTTCCTTAAATCCTCT	0.353													44	59					0	0	0.000680045	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803417	185803417	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:185803417C>T	uc002uph.2	+	4	3888	c.3294C>T	c.(3292-3294)ATC>ATT	p.I1098I		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1098						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TAACCACTATCCATCACACTG	0.358													48	84					0	0	0.000680045	0	0
SLC40A1	30061	broad.mit.edu	37	2	190428935	190428935	+	Silent	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:190428935G>C	uc002uqp.3	-	7	1128	c.777C>G	c.(775-777)CCC>CCG	p.P259P		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	259					anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			TTCCCTCCAGGGGTTTTGGCT	0.418													3	113					0	0	0.00024832	0	0
ASNSD1	54529	broad.mit.edu	37	2	190530903	190530903	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:190530903C>T	uc002uqt.2	+	4	479	c.45C>T	c.(43-45)TTC>TTT	p.F15F		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	15	Glutamine amidotransferase type-2.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			CTGAGCATTTCAGTCAAGATT	0.328													266	421					0	0	0.000781405	0	0
MSTN	2660	broad.mit.edu	37	2	190922180	190922180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:190922180C>T	uc002urp.2	-	3	1065	c.932G>A	c.(931-933)GGA>GAA	p.G311E		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	311					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTCACACTCTCCAGAGCAGTA	0.428													36	51					0	0	0.000491102	0	0
STAT1	6772	broad.mit.edu	37	2	191844533	191844533	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:191844533G>A	uc002usj.2	-	20	2080	c.1692C>T	c.(1690-1692)CTC>CTT	p.L564L	STAT1_uc010fse.1_Silent_p.L564L|STAT1_uc002usk.2_Silent_p.L564L|STAT1_uc002usl.2_Silent_p.L566L	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	564					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	GTTTTTTAATGAGTTCTAGGA	0.363													39	46					0	0	0.000680045	0	0
STAT1	6772	broad.mit.edu	37	2	191874645	191874645	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:191874645C>G	uc002usj.2	-	3	473	c.85G>C	c.(85-87)GAA>CAA	p.E29Q	STAT1_uc010fse.1_Missense_Mutation_p.E29Q|STAT1_uc002usk.2_Missense_Mutation_p.E29Q|STAT1_uc002usl.2_Missense_Mutation_p.E31Q|STAT1_uc010fsf.1_5'UTR	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	29					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	TGTCTGATTTCCATGGGAAAA	0.413													308	460					0	0	0.000781405	0	0
DNAH7	56171	broad.mit.edu	37	2	196759768	196759768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:196759768C>T	uc002utj.3	-	30	4929	c.4828G>A	c.(4828-4830)GAA>AAA	p.E1610K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1610	ATP (Potential).|AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCAAATGGTTCTCCAACAATC	0.333													19	27					0	0	0.00074312	0	0
HECW2	57520	broad.mit.edu	37	2	197298102	197298102	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:197298102T>C	uc002utm.1	-	2	229	c.46A>G	c.(46-48)AAT>GAT	p.N16D		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	16					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						ATCTGGGGATTTCGACGCCTC	0.572													18	30					0	0	0.00121646	0	0
ALS2CR4	65062	broad.mit.edu	37	2	202501564	202501564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:202501564G>A	uc002uyh.1	-	6	282	c.181C>T	c.(181-183)CCC>TCC	p.P61S	ALS2CR4_uc002uyg.1_Missense_Mutation_p.P53S|ALS2CR4_uc010zhp.1_RNA	NM_001044385	NP_001037850	Q96Q45	TM237_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	85						integral to membrane	protein binding				0						CCCTCAGAGGGCCTTCGACCA	0.443													48	81					0	0	0.000781405	0	0
NBEAL1	65065	broad.mit.edu	37	2	204066300	204066300	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:204066300G>T	uc002uzt.3	+	49	7519	c.7186G>T	c.(7186-7188)GGG>TGG	p.G2396W	NBEAL1_uc002uzs.3_Missense_Mutation_p.G1037W	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2396							binding			ovary(1)|skin(1)	2						TTTTGCTCCCGGGCTAGAGAT	0.378													13	942					0.00136819	0.0093286	0.00136819	1	0
INO80D	54891	broad.mit.edu	37	2	206869173	206869173	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:206869173G>A	uc002vaz.3	-	11	3408	c.3003C>T	c.(3001-3003)GCC>GCT	p.A1001A		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	Error:Variant_position_missing_in_Q53TQ3_after_alignment					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						CTGTAGGAGGGGCTATAGAGC	0.542													6	17					0	0	0.00116845	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171914	207171914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:207171914G>A	uc002vbp.2	+	5	2912	c.2662G>A	c.(2662-2664)GAA>AAA	p.E888K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	888							nucleic acid binding|zinc ion binding	p.E888K(1)		ovary(3)	3						TAATTCTCCCGAAGTAGCTGT	0.363													21	30					0	0	0.000295444	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175364	207175364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:207175364G>A	uc002vbp.2	+	5	6362	c.6112G>A	c.(6112-6114)GAT>AAT	p.D2038N		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2038							nucleic acid binding|zinc ion binding			ovary(3)	3						TTGGGATAATGATATTCGGTT	0.358													11	12					0	0	0.000673444	0	0
DYTN	391475	broad.mit.edu	37	2	207527786	207527786	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:207527786G>C	uc002vbr.1	-	11	1591	c.1474C>G	c.(1474-1476)CCC>GCC	p.P492A		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	492						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		ACCATTTTGGGGATGTCCTGC	0.502													24	53					0	0	0.000295444	0	0
ZNF142	7701	broad.mit.edu	37	2	219508346	219508346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:219508346G>A	uc002vin.2	-	8	3329	c.2893C>T	c.(2893-2895)CCT>TCT	p.P965S	ZNF142_uc002vil.2_Missense_Mutation_p.P926S|ZNF142_uc010fvt.2_Missense_Mutation_p.P802S|ZNF142_uc002vim.2_Missense_Mutation_p.P802S	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	965					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CCTGCAGGAGGGACTGGGGAA	0.562													380	559					0	0	0.000781405	0	0
PRKAG3	53632	broad.mit.edu	37	2	219696074	219696075	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:219696074_219696075CC>TT	uc002vjb.1	-	2	76_77	c.57_58GG>AA	c.(55-60)GGGGGT>GGAAGT	p.G20S	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.G20S|PRKAG3_uc010zko.1_Missense_Mutation_p.G20S	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	20					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCTCAGAACCCCCAAGGCTGC	0.554													90	164					0	0	6.4e-05	0	0
CCDC108	255101	broad.mit.edu	37	2	219875354	219875355	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:219875354_219875355GG>AA	uc002vjl.1	-	26	4305_4306	c.4221_4222CC>TT	c.(4219-4224)CCCCAT>CCTTAT	p.H1408Y		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1408						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCATCATATGGGGGTTGTAGC	0.594													59	104					0	0	6.4e-05	0	0
CCDC108	255101	broad.mit.edu	37	2	219878241	219878241	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:219878241C>T	uc002vjl.1	-	23	3930	c.3846G>A	c.(3844-3846)CTG>CTA	p.L1282L		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1282						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGCCTCACCAGGATCTCCC	0.597													54	86					0	0	0.000781405	0	0
STK16	8576	broad.mit.edu	37	2	220111520	220111520	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:220111520C>G	uc002vko.2	+	3	385	c.228C>G	c.(226-228)AAC>AAG	p.N76K	GLB1L_uc002vkm.2_5'Flank|GLB1L_uc002vkn.2_5'Flank|STK16_uc002vks.2_Intron|STK16_uc010zky.1_Missense_Mutation_p.N76K|STK16_uc010fwf.2_Missense_Mutation_p.N76K|STK16_uc002vkp.2_Missense_Mutation_p.N76K|STK16_uc002vkr.2_Missense_Mutation_p.N9K|STK16_uc002vkq.2_Missense_Mutation_p.N121K	NM_001008910	NP_001008910	O75716	STK16_HUMAN	serine/threonine kinase 16	76	Protein kinase.				protein complex assembly	membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATCACCCCAACATCCTTCGCC	0.572													140	247					0	0	0.000781405	0	0
PTPRN	5798	broad.mit.edu	37	2	220166329	220166329	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:220166329C>T	uc002vkz.2	-	7	1196	c.1107G>A	c.(1105-1107)AAG>AAA	p.K369K	PTPRN_uc010zlc.1_Silent_p.K279K|PTPRN_uc002vla.2_Silent_p.K369K	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	369	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		TTCCTGCACCCTTGGGCAGTA	0.627													323	481					0	0	0.000781405	0	0
SPEG	10290	broad.mit.edu	37	2	220355197	220355197	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:220355197C>T	uc010fwg.2	+	37	8988	c.8988C>T	c.(8986-8988)ATC>ATT	p.I2996I		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2996	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TGGCCAAGATCGTGCCCTATG	0.672													197	292					0	0	0.000781405	0	0
TMEM198	130612	broad.mit.edu	37	2	220412289	220412290	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:220412289_220412290CT>TG	uc002vme.2	+	4	813_814	c.228_229CT>TG	c.(226-231)ATCTTC>ATTGTC	p.F77V	TMEM198_uc002vmf.2_Missense_Mutation_p.F77V	NM_001005209	NP_001005209	Q66K66	TM198_HUMAN	transmembrane protein 198	77	Leu-rich.|Helical; (Potential).					integral to membrane				ovary(1)	1		Renal(207;0.0376)		Epithelial(149;6.49e-08)|all cancers(144;6.45e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		CGGTGGTCATCTTCCTCCTCTG	0.634											OREG0003985	type=REGULATORY REGION|Gene=AK123175|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	276	628					0	0	6.4e-05	0	0
STK11IP	114790	broad.mit.edu	37	2	220478553	220478554	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:220478553_220478554GG>AA	uc002vml.2	+	21	2693_2694	c.2650_2651GG>AA	c.(2650-2652)GGC>AAC	p.G884N		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	884					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGCCTGGCAGGCCAGAGCCTG	0.663													165	349					0	0	6.4e-05	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447029	226447029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:226447029C>T	uc002voe.2	+	4	1071	c.896C>T	c.(895-897)CCC>CTC	p.P299L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.P69L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	299										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGTGCTACTCCCACGGTGCCT	0.577													186	354					0	0	0.000781405	0	0
AGFG1	3267	broad.mit.edu	37	2	228389553	228389553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:228389553G>A	uc002vpc.2	+	5	866	c.616G>A	c.(616-618)GAC>AAC	p.D206N	AGFG1_uc002vpd.2_Missense_Mutation_p.D206N|AGFG1_uc002vpe.2_Missense_Mutation_p.D206N|AGFG1_uc002vpf.2_Missense_Mutation_p.D206N	NM_004504	NP_004495	P52594	AGFG1_HUMAN	HIV-1 Rev binding protein isoform 2	206					cell differentiation|mRNA export from nucleus|multicellular organismal development|regulation of ARF GTPase activity|spermatogenesis	cytoplasmic membrane-bounded vesicle|Golgi apparatus|nuclear pore	ARF GTPase activator activity|DNA binding|protein binding|RNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4						TCTCGGCTCAGACATCTTTGC	0.438													24	43					0	0	0.00047179	0	0
SPHKAP	80309	broad.mit.edu	37	2	228855765	228855765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:228855765C>T	uc002vpq.2	-	11	4957	c.4910G>A	c.(4909-4911)GGG>GAG	p.G1637E	SPHKAP_uc002vpp.2_Missense_Mutation_p.G1608E|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1637						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGTGGGAATCCCCAGTTCAGA	0.483													9	22					0	0	0.00136819	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883733	228883733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:228883733C>T	uc002vpq.2	-	7	1884	c.1837G>A	c.(1837-1839)GAA>AAA	p.E613K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E613K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E613K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	613						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCAATGGCTTCCTTGCCAAGC	0.537													16	20					0	0	0.000308642	0	0
SP140	11262	broad.mit.edu	37	2	231106160	231106160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:231106160G>A	uc002vql.2	+	4	563	c.448G>A	c.(448-450)GAT>AAT	p.D150N	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Missense_Mutation_p.D150N|SP140_uc002vqn.2_Missense_Mutation_p.D150N|SP140_uc002vqm.2_Missense_Mutation_p.D150N|SP140_uc010fxl.2_Missense_Mutation_p.D150N	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	150					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TAATGTAAACGATTTAGAAGA	0.378													5	16					0	0	0.00116845	0	0
SP140L	93349	broad.mit.edu	37	2	231222673	231222673	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:231222673A>T	uc010fxm.1	+	3	352	c.261A>T	c.(259-261)AAA>AAT	p.K87N	SP140_uc010zma.1_RNA|SP140L_uc010fxn.1_5'UTR	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	87	HSR.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						TCACAAATAAAATGTTTGAAG	0.363													150	207					0	0	0.000781405	0	0
SP140L	93349	broad.mit.edu	37	2	231253283	231253283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:231253283G>A	uc010fxm.1	+	10	885	c.794G>A	c.(793-795)AGA>AAA	p.R265K	SP140L_uc010fxo.1_Missense_Mutation_p.R72K	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	265						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GGGAGAAAGAGAGGCAAACCT	0.363													3	9					0	0	0.00024832	0	0
GPR55	9290	broad.mit.edu	37	2	231775515	231775515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:231775515C>T	uc002vrg.2	-	2	356	c.163G>A	c.(163-165)GAT>AAT	p.D55N	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Missense_Mutation_p.D55N	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	55	Cytoplasmic (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		GCAGCATAATCGGGCCACCTG	0.562													93	160					0	0	0.000781405	0	0
ALPPL2	251	broad.mit.edu	37	2	233272555	233272555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:233272555G>A	uc002vss.3	+	5	529	c.476G>A	c.(475-477)GGA>GAA	p.G159E		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	159					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	TCACCCTCAGGAAAGTCAGTG	0.617													266	434					0	0	0.000781405	0	0
NEU2	4759	broad.mit.edu	37	2	233897453	233897453	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:233897453C>T	uc010zmn.1	+	1	72	c.72C>T	c.(70-72)GCC>GCT	p.A24A		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	24							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GAATCCCTGCCCTGCTCTACC	0.627													218	372					0	0	0.000781405	0	0
SH3BP4	23677	broad.mit.edu	37	2	235962430	235962430	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:235962430C>T	uc002vvp.2	+	6	3255	c.2862C>T	c.(2860-2862)AGC>AGT	p.S954S	SH3BP4_uc010fym.2_Silent_p.S936S|SH3BP4_uc002vvq.2_Silent_p.S954S	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	954					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		CCGCCTTCAGCCCTGCGGACC	0.597													221	388					0	0	0.000781405	0	0
PRR21	643905	broad.mit.edu	37	2	240982270	240982270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:240982270C>T	uc010zod.1	-	1	130	c.130G>A	c.(130-132)GGC>AGC	p.G44S		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	44	Pro-rich.									ovary(1)|skin(1)	2						GGTGAAGAGCCGTGGATGAAG	0.582													88	125					0	0	0.000781405	0	0
KIF1A	547	broad.mit.edu	37	2	241728671	241728672	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:241728671_241728672GG>AA	uc002vzy.2	-	3	310_311	c.164_165CC>TT	c.(163-165)TCC>TTT	p.S55F	KIF1A_uc010fzk.2_Missense_Mutation_p.S55F|KIF1A_uc002vzz.1_Missense_Mutation_p.S55F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	55	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GCGACCAGTAGGAGTAGTCAAA	0.619													174	321					0	0	6.4e-05	0	0
AGXT	189	broad.mit.edu	37	2	241813426	241813426	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:241813426G>A	uc002waa.3	+	6	748	c.627G>A	c.(625-627)AAG>AAA	p.K209K	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	209				K->R: Affects pyridoxal phosphate binding.	glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	GCTCCCAGAAGGCCCTGAACG	0.632													254	566					0	0	0.000781405	0	0
C20orf96	140680	broad.mit.edu	37	20	257909	257909	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:257909G>T	uc002wde.1	-	7	820	c.681C>A	c.(679-681)TCC>TCA	p.S227S	C20orf96_uc002wdc.2_Silent_p.S174S|C20orf96_uc002wdd.2_Silent_p.S192S|C20orf96_uc010zpi.1_Silent_p.S174S|C20orf96_uc010zpj.1_Silent_p.S192S|C20orf96_uc010zpk.1_Silent_p.S165S	NM_153269	NP_695001	Q9NUD7	CT096_HUMAN	hypothetical protein LOC140680	227	Potential.										0		all_cancers(10;0.00959)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GCATAAGAGTGGAGATCTGGA	0.557													12	944					3.86212e-05	0.000268012	0.000673444	1	0
TGM3	7053	broad.mit.edu	37	20	2315831	2315831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:2315831G>A	uc002wfx.3	+	11	1809	c.1712G>A	c.(1711-1713)CGG>CAG	p.R571Q		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	571					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	AACATGATCCGGATCACAGCG	0.552													89	141					0	0	0.000781405	0	0
TGM6	343641	broad.mit.edu	37	20	2411208	2411208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:2411208G>A	uc002wfy.1	+	11	1856	c.1795G>A	c.(1795-1797)GAG>AAG	p.E599K	TGM6_uc010gal.1_Missense_Mutation_p.E599K	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	599					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GCTTCTGGTGGAGAAGGACAT	0.493													39	65					0	0	0.000509022	0	0
SNRPB	6628	broad.mit.edu	37	20	2443366	2443366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:2443366G>A	uc002wfz.1	-	6	764	c.601C>T	c.(601-603)CCC>TCC	p.P201S	SNRPB_uc002wga.1_Missense_Mutation_p.P201S|SNRPB_uc010zpv.1_Missense_Mutation_p.P122S|SNRPB_uc002wgb.2_Missense_Mutation_p.P201S	NM_198216	NP_937859	P14678	RSMB_HUMAN	small nuclear ribonucleoprotein polypeptide B/B'	201	Repeat-rich region.			Missing (in Ref. 4).	histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|protein binding|RNA binding			ovary(1)	1						CCCATTGGGGGACCCATAGGA	0.572													157	266					0	0	0.000781405	0	0
NOP56	10528	broad.mit.edu	37	20	2636010	2636010	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:2636010C>T	uc002wgh.2	+	6	662	c.609C>T	c.(607-609)ATC>ATT	p.I203I	NOP56_uc010zpy.1_RNA|NOP56_uc002wgi.2_Silent_p.I37I|NOP56_uc002wgm.1_5'Flank|SNORD86_uc010gaq.1_5'Flank|SNORD56_uc010gar.2_5'Flank|SNORD57_uc002wgo.1_5'Flank	NM_006392	NP_006383	O00567	NOP56_HUMAN	nucleolar protein 5A	203					rRNA processing	box C/D snoRNP complex|pre-snoRNP complex	protein binding|snoRNA binding			ovary(1)|pancreas(1)	2						TGGTGAAGATCATCAACGACA	0.517													341	541					0	0	0.000781405	0	0
CPXM1	56265	broad.mit.edu	37	20	2778928	2778928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:2778928C>T	uc002wgu.2	-	4	524	c.460G>A	c.(460-462)GAG>AAG	p.E154K	CPXM1_uc010gas.2_Missense_Mutation_p.E154K	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	154	F5/8 type C.				cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						TCGCCGTCCTCCAGGCCTGAC	0.632													190	248					0	0	0.000781405	0	0
HSPA12B	116835	broad.mit.edu	37	20	3725616	3725616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:3725616G>A	uc002wjd.2	+	5	437	c.334G>A	c.(334-336)GAG>AAG	p.E112K	HSPA12B_uc010zqi.1_Missense_Mutation_p.E112K|HSPA12B_uc002wje.2_Missense_Mutation_p.E25K|HSPA12B_uc010zqj.1_5'UTR	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	112							ATP binding				0						GCTGACTCCGGAGGGCGCCTT	0.642													339	594					0	0	0.000781405	0	0
GPCPD1	56261	broad.mit.edu	37	20	5559205	5559205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:5559205G>A	uc002wme.3	-	8	739	c.526C>T	c.(526-528)CCC>TCC	p.P176S	GPCPD1_uc002wmd.3_5'UTR	NM_019593	NP_062539	Q9NPB8	GPCP1_HUMAN	hypothetical protein LOC56261	176					glycerol metabolic process|lipid metabolic process		carbohydrate binding|glycerophosphodiester phosphodiesterase activity				0						AGTACAGTGGGAGATACCCTA	0.433													69	129					0	0	0.000781405	0	0
HAO1	54363	broad.mit.edu	37	20	7886933	7886933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:7886933C>T	uc002wmw.1	-	4	613	c.589G>A	c.(589-591)GAA>AAA	p.E197K	HAO1_uc010gbu.2_Missense_Mutation_p.E197K	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	197	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						CCAAAATTTTCCTCAGGAGAA	0.353													16	23					0	0	0.000566183	0	0
TMX4	56255	broad.mit.edu	37	20	7963024	7963025	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:7963024_7963025GG>AA	uc002wmx.1	-	8	1056_1057	c.923_924CC>TT	c.(922-924)ACC>ATT	p.T308I		NM_021156	NP_066979	Q9H1E5	TMX4_HUMAN	thioredoxin-related transmembrane protein 4	308	Glu-rich.				cell redox homeostasis|electron transport chain|transport	integral to membrane					0						CTTCCTCCCGGGTCACACCGTC	0.51													18	38					0	0	6.4e-05	0	0
PLCB4	5332	broad.mit.edu	37	20	9318659	9318659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:9318659G>A	uc002wnf.2	+	5	306	c.170G>A	c.(169-171)GGA>GAA	p.G57E	PLCB4_uc010gbw.1_Missense_Mutation_p.G57E|PLCB4_uc010gbx.2_Missense_Mutation_p.G57E|PLCB4_uc002wne.2_Missense_Mutation_p.G57E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	57					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CTTCAGGAAGGACAGGTGCTA	0.413													7	15					0	0	8.12818e-05	0	0
C20orf103	24141	broad.mit.edu	37	20	9497006	9497006	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:9497006G>C	uc002wni.1	+	4	702	c.473G>C	c.(472-474)AGT>ACT	p.S158T	C20orf103_uc010zrc.1_Missense_Mutation_p.S114T	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	158	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GACGCAGTCAGTGGTGAGTGG	0.557													191	327					0	0	0.000781405	0	0
SNAP25	6616	broad.mit.edu	37	20	10273863	10273863	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:10273863A>C	uc002wnq.1	+	5	430	c.218A>C	c.(217-219)GAA>GCA	p.E73A	SNAP25_uc002wnr.1_Intron|SNAP25_uc002wns.1_Missense_Mutation_p.E10A|SNAP25_uc010gca.1_Intron|SNAP25_uc010gcb.1_Missense_Mutation_p.E10A|SNAP25_uc010gcc.1_Intron	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	73	Interaction with CENPF (By similarity).|t-SNARE coiled-coil homology 1.				energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	GACATGAAAGAAGCAGAAAAG	0.443													31	86					0	0	0.00058488	0	0
SPTLC3	55304	broad.mit.edu	37	20	12990012	12990012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:12990012G>A	uc002wod.1	+	1	386	c.97G>A	c.(97-99)GGA>AGA	p.G33R	SPTLC3_uc002wob.1_RNA|SPTLC3_uc002woc.2_Missense_Mutation_p.G33R	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	33					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	CACAAAGAATGGAATAGTGAA	0.458													22	31					0	0	0.000229342	0	0
ZNF133	7692	broad.mit.edu	37	20	18295778	18295778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:18295778C>T	uc010gcq.2	+	5	588	c.283C>T	c.(283-285)CCC>TCC	p.P95S	ZNF133_uc010zrv.1_Missense_Mutation_p.P98S|ZNF133_uc010zrw.1_Missense_Mutation_p.P32S|ZNF133_uc010gcr.2_Missense_Mutation_p.P95S|ZNF133_uc010zrx.1_5'UTR|ZNF133_uc002wql.3_Missense_Mutation_p.P94S|ZNF133_uc010gcs.2_Missense_Mutation_p.P94S|ZNF133_uc010zry.1_5'UTR|ZNF133_uc002wqm.2_Missense_Mutation_p.P95S	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	95						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						TCAGAAATTCCCCATGCAGCA	0.552													96	174					0	0	0.000781405	0	0
C20orf26	26074	broad.mit.edu	37	20	20278924	20278924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:20278924G>A	uc002wru.2	+	25	3392	c.3316G>A	c.(3316-3318)GAG>AAG	p.E1106K	C20orf26_uc002wrw.2_RNA	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	1106										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CCTTTCTAGGGAGCCCTTCCC	0.478													110	204					0	0	0.000781405	0	0
CST8	10047	broad.mit.edu	37	20	23472502	23472502	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:23472502C>T	uc002wth.1	+	2	555	c.198C>T	c.(196-198)TTC>TTT	p.F66F		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	66						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					AGTATGTCTTCCTGGTGGTCA	0.463													42	75					0	0	0.000374591	0	0
PYGB	5834	broad.mit.edu	37	20	25277119	25277119	+	Silent	SNP	C	T	T	rs141315124	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:25277119C>T	uc002wup.2	+	20	2602	c.2493C>T	c.(2491-2493)TCC>TCT	p.S831S	ABHD12_uc002wuq.2_Intron|ABHD12_uc002wur.2_Intron	NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	831					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	TGGAGCCCTCCGACCTGCAGA	0.612													213	355					0	0	0.000781405	0	0
NINL	22981	broad.mit.edu	37	20	25436341	25436341	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:25436341G>T	uc002wux.1	-	23	3999	c.3925C>A	c.(3925-3927)CTC>ATC	p.L1309I	NINL_uc010gdn.1_Missense_Mutation_p.L960I|NINL_uc002wuw.1_Missense_Mutation_p.L100I	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1309	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TTCTCTTGGAGGAGCATTTCC	0.488													16	933					0.000219431	0.00151667	0.000219431	1	0
REM1	28954	broad.mit.edu	37	20	30064251	30064251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:30064251G>A	uc002wwa.2	+	2	287	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	1					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TACCAAAGATGACACTCAACA	0.577													247	443					0	0	0.000781405	0	0
DUSP15	128853	broad.mit.edu	37	20	30436629	30436629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:30436629C>T	uc002wwu.1	-	9	783	c.706G>A	c.(706-708)GAG>AAG	p.E236K				Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	236						cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ATGAGCTGCTCCTTGGGGTGC	0.607													97	209					0	0	0.000781405	0	0
DUSP15	128853	broad.mit.edu	37	20	30450449	30450449	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:30450449G>A	uc002wwu.1	-	6	428	c.351C>T	c.(349-351)GCC>GCT	p.A117A	DUSP15_uc002wwv.1_Silent_p.A17A|DUSP15_uc002www.1_Silent_p.A17A|DUSP15_uc002wwx.1_Silent_p.A120A			Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	117	Tyrosine-protein phosphatase.					cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TGGGCCTGGTGGCCTTGATGG	0.602													288	509					0	0	0.000781405	0	0
POFUT1	23509	broad.mit.edu	37	20	30803152	30803152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:30803152G>A	uc002wxp.2	+	3	376	c.327G>A	c.(325-327)ATG>ATA	p.M109I	POFUT1_uc002wxo.2_Missense_Mutation_p.M109I|POFUT1_uc010ztt.1_Missense_Mutation_p.M1I|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	109					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AGGATTTCATGGAGAAGCTGG	0.572													250	387					0	0	0.000781405	0	0
ASXL1	171023	broad.mit.edu	37	20	31024358	31024358	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:31024358C>T	uc002wxs.2	+	12	4269	c.3843C>T	c.(3841-3843)TCC>TCT	p.S1281S	ASXL1_uc010geb.2_Silent_p.S1172S	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1281					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						ATGTGATCTCCTTTGGTCCAG	0.507			F|N|Mis		MDS|CMML								309	487					0	0	0.000781405	0	0
C20orf112	140688	broad.mit.edu	37	20	31040688	31040688	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:31040688T>C	uc002wxu.3	-	6	1044	c.887A>G	c.(886-888)CAG>CGG	p.Q296R	C20orf112_uc010gec.2_Missense_Mutation_p.Q121R	NM_080616	NP_542183	Q96MY1	CT112_HUMAN	hypothetical protein LOC140688	296											0						GGCAGGTACCTGTGAGGACTG	0.607													4	628					0	0	0.00116845	0	0
C20orf185	359710	broad.mit.edu	37	20	31643346	31643346	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:31643346C>T	uc002wym.1	+	1	117	c.117C>T	c.(115-117)CTC>CTT	p.L39L		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	39	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						AGGATGAACTCGGCAAAGGTG	0.572													162	332					0	0	0.000781405	0	0
PLUNC	51297	broad.mit.edu	37	20	31828158	31828158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:31828158C>T	uc002wyv.2	+	5	618	c.548C>T	c.(547-549)TCC>TTC	p.S183F	PLUNC_uc002wyt.3_Missense_Mutation_p.S183F|PLUNC_uc002wyu.3_Missense_Mutation_p.S183F	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	183					innate immune response	extracellular region	lipid binding				0						TGCACCCATTCCCCTGGAAGC	0.537													101	199					0	0	0.000781405	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33421470	33421470	+	RNA	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:33421470A>G	uc002xax.2	-	1		c.796T>C				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						GTGCCGTCCAACTTTCCTTTC	0.294													33	50					0	0	0.000339439	0	0
PHF20	51230	broad.mit.edu	37	20	34505530	34505530	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:34505530C>T	uc002xek.1	+	13	2061	c.1950C>T	c.(1948-1950)TTC>TTT	p.F650F		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	650					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GCTATGACTTCGAGGTGGTCC	0.502													57	68					0	0	0.000781405	0	0
EPB41L1	2036	broad.mit.edu	37	20	34761873	34761873	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:34761873A>G	uc002xfb.2	+	2	345	c.174A>G	c.(172-174)GAA>GAG	p.E58E	EPB41L1_uc002xeu.2_Intron|EPB41L1_uc010zvo.1_Silent_p.E58E|EPB41L1_uc002xev.2_Silent_p.E58E|EPB41L1_uc002xew.2_Intron|EPB41L1_uc002xex.2_Intron|EPB41L1_uc002xey.2_Silent_p.E58E|EPB41L1_uc002xez.2_Intron	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	58					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GGCCTGCTGAACAGGTGTGTG	0.602													33	53					0	0	0.000491102	0	0
RBL1	5933	broad.mit.edu	37	20	35668680	35668680	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:35668680G>A	uc002xgi.2	-	14	1858	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Silent_p.F593F	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	593	Pocket; binds T and E1A.|Spacer.				cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				AGTTATTTGGGAATATAACCT	0.313													61	99					0	0	0.000781405	0	0
SRC	6714	broad.mit.edu	37	20	36022652	36022652	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:36022652C>T	uc002xgx.2	+	7	974	c.525C>T	c.(523-525)TTC>TTT	p.F175F	SRC_uc002xgy.2_Silent_p.F175F	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	175	SH2.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	GAGGGACCTTCCTCGTGCGAG	0.502													232	432					0	0	0.000781405	0	0
RALGAPB	57148	broad.mit.edu	37	20	37168551	37168551	+	Nonsense_Mutation	SNP	C	T	T	rs79899092		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:37168551C>T	uc002xiw.2	+	17	2769	c.2512C>T	c.(2512-2514)CAG>TAG	p.Q838*	RALGAPB_uc002xix.2_Nonsense_Mutation_p.Q834*|RALGAPB_uc002xiy.1_Nonsense_Mutation_p.Q838*|RALGAPB_uc002xiz.2_Nonsense_Mutation_p.Q616*|RALGAPB_uc002xja.1_Nonsense_Mutation_p.Q565*	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	838					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						GGCAGCTTTTCAGTGTCTCTG	0.423													23	64					0	0	0.00106085	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37547011	37547011	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:37547011G>A	uc002xje.2	+	11	1595	c.1406G>A	c.(1405-1407)TGG>TAG	p.W469*	PPP1R16B_uc010ggc.2_Nonsense_Mutation_p.W427*	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	469					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				ACCCCGCCCTGGAGCAGCTAC	0.637													235	396					0	0	0.000781405	0	0
ZHX3	23051	broad.mit.edu	37	20	39831811	39831811	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:39831811G>A	uc002xjs.1	-	3	2124	c.1746C>T	c.(1744-1746)GTC>GTT	p.V582V	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Silent_p.V582V|ZHX3_uc002xjt.1_Silent_p.V582V|ZHX3_uc002xju.1_Silent_p.V582V|ZHX3_uc002xjv.1_Silent_p.V582V|ZHX3_uc002xjw.1_Silent_p.V582V|ZHX3_uc010ggg.1_Silent_p.V582V	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	582					negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				TTACCTCAGGGACCTTGGACG	0.532													114	194					0	0	0.000781405	0	0
CHD6	84181	broad.mit.edu	37	20	40079712	40079712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:40079712C>T	uc002xka.1	-	23	3735	c.3557G>A	c.(3556-3558)GGG>GAG	p.G1186E		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1186					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CGTCTTCTTCCCCTTCCTCCC	0.522													31	54					0	0	0.000339439	0	0
ADA	100	broad.mit.edu	37	20	43257749	43257749	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:43257749C>A	uc002xmj.2	-	3	285	c.157G>T	c.(157-159)GAC>TAC	p.D53Y	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	53					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	AGCGGCTTGTCCATGCCAATG	0.582									Adenosine_Deaminase_Deficiency				225	426					2.98577e-107	2.1143e-106	0.000781405	1	0
C20orf165	128497	broad.mit.edu	37	20	44515309	44515309	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:44515309C>T	uc002xqf.2	-	2	540	c.531G>A	c.(529-531)CTG>CTA	p.L177L		NM_080608	NP_542175	Q9BR10	CT165_HUMAN	chromosome 20 open reading frame 165	177						integral to membrane					0		Myeloproliferative disorder(115;0.0122)				CGGCCCAGATCAGGTCCTCTT	0.647													295	455					0	0	0.000781405	0	0
ZNF335	63925	broad.mit.edu	37	20	44594305	44594306	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:44594305_44594306CG>AT	uc002xqw.2	-	7	1186_1187	c.1063_1064CG>AT	c.(1063-1065)CGG>ATG	p.R355M	ZNF335_uc010zxk.1_Missense_Mutation_p.R200M|ZNF335_uc002xqx.1_Missense_Mutation_p.R323M	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	355					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GGGCAGCTTCCGGGGCCGGCCA	0.673													8	574					0	0	6.4e-05	0	0
CDH22	64405	broad.mit.edu	37	20	44815301	44815301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:44815301C>T	uc002xrm.2	-	9	1990	c.1589G>A	c.(1588-1590)GGC>GAC	p.G530D	CDH22_uc010ghk.1_Missense_Mutation_p.G530D	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	530	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.G530C(1)		ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GCGGTGCCCGCCTTGGGGCTC	0.587													132	184					0	0	0.000781405	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353822	45353822	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:45353822C>T	uc002xsl.2	+	2	244	c.147C>T	c.(145-147)TTC>TTT	p.F49F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	49	Helical; Name=2; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGCAGGAGTTCCTGGTGGGCA	0.592													216	382					0	0	0.000781405	0	0
KCNB1	3745	broad.mit.edu	37	20	47991500	47991500	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:47991500G>A	uc002xur.1	-	2	761	c.597C>T	c.(595-597)ATC>ATT	p.I199I	KCNB1_uc002xus.1_Silent_p.I199I	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	199	Helical; Name=Segment S1; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGGAGAGGACGATGAACATGA	0.488													32	68					0	0	0.000279167	0	0
FAM65C	140876	broad.mit.edu	37	20	49208975	49208975	+	Missense_Mutation	SNP	C	G	G	rs116291748	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:49208975C>G	uc002xvm.2	-	19	2789	c.2471G>C	c.(2470-2472)TGG>TCG	p.W824S	FAM65C_uc010zyt.1_Missense_Mutation_p.W828S	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	824										ovary(2)	2						GAGCAGCGCCCAGGCTCTTAA	0.662													5	409					0	0	0.000602214	0	0
SALL4	57167	broad.mit.edu	37	20	50406809	50406809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:50406809G>A	uc002xwh.3	-	2	2314	c.2213C>T	c.(2212-2214)CCT>CTT	p.P738L	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	738					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAAAGGGGCAGGACCCACTTT	0.597													99	178					0	0	0.000781405	0	0
ZFP64	55734	broad.mit.edu	37	20	50715040	50715040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:50715040G>A	uc002xwk.2	-	6	1199	c.850C>T	c.(850-852)CCC>TCC	p.P284S	ZFP64_uc002xwj.2_Missense_Mutation_p.P65S	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCCTCTGAGGGAAGAGTGATG	0.512													192	305					0	0	0.000781405	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871597	51871597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:51871597G>A	uc002xwo.2	+	2	2556	c.1600G>A	c.(1600-1602)GGG>AGG	p.G534R		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	534					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGCCCAAAACGGGGCCCCCAG	0.552													86	157					0	0	0.000781405	0	0
ZNF831	128611	broad.mit.edu	37	20	57767199	57767199	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:57767199G>A	uc002yan.2	+	1	1125	c.1125G>A	c.(1123-1125)GGG>GGA	p.G375G		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	375						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGTCCGAGGGGGAgggcggcc	0.527													71	106					0	0	0.000781405	0	0
SYCP2	10388	broad.mit.edu	37	20	58475246	58475246	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:58475246A>T	uc002yaz.2	-	17	1490	c.1351T>A	c.(1351-1353)TCA>ACA	p.S451T	SYCP2_uc010gju.1_Missense_Mutation_p.S352T	NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	451					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			ATATATTTTGAAGGTTTAGCA	0.358													32	52					0	0	0.000279167	0	0
CDH4	1002	broad.mit.edu	37	20	60485496	60485496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:60485496G>A	uc002ybn.1	+	9	1221	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	CDH4_uc002ybp.1_Missense_Mutation_p.E329K	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	403	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGAGGTCCCCGAAAACCGCGT	0.428													154	239					0	0	0.000781405	0	0
SS18L1	26039	broad.mit.edu	37	20	60737912	60737913	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:60737912_60737913GG>AA	uc002ycb.2	+	5	536_537	c.481_482GG>AA	c.(481-483)GGC>AAC	p.G161N	SS18L1_uc011aaa.1_Missense_Mutation_p.G161N|SS18L1_uc002ybz.1_RNA|SS18L1_uc002yca.1_RNA|SS18L1_uc002ycc.1_RNA	NM_198935	NP_945173	O75177	CREST_HUMAN	SS18-like protein 1	161	Methionine-rich intra-molecular domain (By similarity).				chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed chromosome kinetochore				ovary(2)	2	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.92e-08)			CGCCTCGCAGGGCGTCCCCATG	0.649			T	SSX1	synovial sarcoma								100	201					0	0	6.4e-05	0	0
YTHDF1	54915	broad.mit.edu	37	20	61833775	61833776	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:61833775_61833776CG>AT	uc002yeh.2	-	4	1810_1811	c.1516_1517CG>AT	c.(1516-1518)CGG>ATG	p.R506M	YTHDF1_uc011aaq.1_Missense_Mutation_p.R456M	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	506	YTH.									ovary(2)	2						CTGGGTGTCCCGGGAGTTTGTG	0.475													8	562					0	0	6.4e-05	0	0
KCNQ2	3785	broad.mit.edu	37	20	62039804	62039805	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:62039804_62039805GG>AA	uc002yey.1	-	16	2025_2026	c.1848_1849CC>TT	c.(1846-1851)GACCCC>GATTCC	p.P617S	KCNQ2_uc002yez.1_Missense_Mutation_p.P586S|KCNQ2_uc002yfa.1_Missense_Mutation_p.P599S|KCNQ2_uc002yfb.1_Missense_Mutation_p.P589S	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	617	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	ATCATGCTGGGGTCCTCGGGCA	0.703													69	110					0	0	6.4e-05	0	0
PRPF6	24148	broad.mit.edu	37	20	62626688	62626688	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:62626688A>G	uc002yho.2	+	6	792	c.624A>G	c.(622-624)GGA>GGG	p.G208G	PRPF6_uc002yhp.2_Silent_p.G208G	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	208					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					AGCAATTTGGAGGTCTTAACA	0.498													3	129					0	0	6.4e-05	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737461	62737461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:62737461C>T	uc011abt.1	-	1	724	c.724G>A	c.(724-726)GTG>ATG	p.V242M		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	242	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CGGAGCCGCACGGCCCGCAGC	0.667													99	174					0	0	0.000781405	0	0
CHODL	140578	broad.mit.edu	37	21	19628897	19628897	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:19628897C>T	uc002ykv.2	+	2	542	c.151C>T	c.(151-153)CGA>TGA	p.R51*	CHODL_uc002ykr.2_Nonsense_Mutation_p.R10*|CHODL_uc002yks.2_Nonsense_Mutation_p.R10*|CHODL_uc002ykt.2_Nonsense_Mutation_p.R10*|CHODL_uc002yku.2_Nonsense_Mutation_p.R10*	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	51	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		ACTGTCCAGCCGAGTGAGCTT	0.463													51	28					0	0	0.000781405	0	0
TIAM1	7074	broad.mit.edu	37	21	32582404	32582404	+	Missense_Mutation	SNP	C	T	T	rs138815314		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:32582404C>T	uc002yow.1	-	12	2817	c.2345G>A	c.(2344-2346)CGG>CAG	p.R782Q	TIAM1_uc011adk.1_Missense_Mutation_p.R782Q|TIAM1_uc011adl.1_Missense_Mutation_p.R757Q	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	782	RBD.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GTCGCCTGGCCGGACGACCGT	0.547													30	21					0	0	0.00106085	0	0
C21orf63	59271	broad.mit.edu	37	21	33873794	33873794	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:33873794A>C	uc002ypr.1	+	6	1258	c.848A>C	c.(847-849)GAT>GCT	p.D283A	C21orf63_uc002yps.1_RNA|C21orf63_uc010glw.1_Missense_Mutation_p.D283A|C21orf63_uc002ypt.1_RNA|C21orf63_uc002ypu.1_Missense_Mutation_p.D188A|C21orf63_uc011adq.1_5'UTR	NM_058187	NP_478067	P58658	CU063_HUMAN	hypothetical protein LOC59271 precursor	283	Extracellular (Potential).					integral to membrane	sugar binding			ovary(2)|pancreas(1)	3						AAGCAGAAAGATGGTGAATAT	0.378													45	31					0	0	0.000781405	0	0
DSCAM	1826	broad.mit.edu	37	21	41465770	41465770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:41465770G>A	uc002yyq.1	-	21	4180	c.3728C>T	c.(3727-3729)TCG>TTG	p.S1243L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1243	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTAGGAAAACGAGTCGGGAGA	0.478													17	16					0	0	0.000958276	0	0
RIPK4	54101	broad.mit.edu	37	21	43187172	43187172	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:43187172G>A	uc002yzn.1	-	1	78	c.30C>T	c.(28-30)GCC>GCT	p.A10A		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	10						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						GCAGCGCCAGGGCCCATGGGG	0.721													82	48					0	0	0.000781405	0	0
PRDM15	63977	broad.mit.edu	37	21	43256640	43256640	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:43256640A>C	uc002yzq.1	-	16	2329	c.2218T>G	c.(2218-2220)TGC>GGC	p.C740G	PRDM15_uc002yzo.2_Missense_Mutation_p.C411G|PRDM15_uc002yzp.2_Missense_Mutation_p.C411G|PRDM15_uc002yzr.1_Missense_Mutation_p.C411G	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	740	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGATATTGCACTGGTAAACC	0.507													394	233					0	0	0.000781405	0	0
CBS	875	broad.mit.edu	37	21	44488672	44488672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:44488672G>A	uc002zcu.2	-	4	508	c.263C>T	c.(262-264)CCT>CTT	p.P88L	CBS_uc002zcs.1_5'Flank|CBS_uc002zct.2_Missense_Mutation_p.P88L|CBS_uc002zcw.3_Missense_Mutation_p.P88L|CBS_uc002zcv.2_Missense_Mutation_p.P88L	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	88			P -> S (in CBSD).		cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	TCTGACCATAGGGGTGTCCCC	0.453													568	349					0	0	0.000781405	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011854	46011854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:46011854G>A	uc002zfm.2	-	1	533	c.512C>T	c.(511-513)TCG>TTG	p.S171L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	171	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGGCAGCACGAAGAGGAAAT	0.642													393	229					0	0	0.000781405	0	0
ITGB2	3689	broad.mit.edu	37	21	46323291	46323291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:46323291G>A	uc002zgd.2	-	4	532	c.488C>T	c.(487-489)TCC>TTC	p.S163F	ITGB2_uc002zge.2_Missense_Mutation_p.S163F|ITGB2_uc002zgf.3_Missense_Mutation_p.S163F|ITGB2_uc011afl.1_Missense_Mutation_p.S85F|ITGB2_uc010gpw.2_Intron|ITGB2_uc002zgg.2_Missense_Mutation_p.S163F	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	163	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	AATGCGGCCGGACTCGGTGAT	0.592													347	195					0	0	0.000781405	0	0
COL18A1	80781	broad.mit.edu	37	21	46912603	46912603	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:46912603C>T	uc011afs.1	+	23	3456	c.3435C>T	c.(3433-3435)GGC>GGT	p.G1145G	COL18A1_uc002zhg.2_Silent_p.G730G|COL18A1_uc002zhi.2_Silent_p.G910G	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1145	Triple-helical region 5 (COL5).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		TTCCCCAGGGCCGGCCGGGTT	0.701													352	175					0	0	0.000781405	0	0
COL18A1	80781	broad.mit.edu	37	21	46931086	46931086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr21:46931086C>T	uc011afs.1	+	41	5012	c.4991C>T	c.(4990-4992)CCC>CTC	p.P1664L	COL18A1_uc002zhg.2_Missense_Mutation_p.P1249L|COL18A1_uc002zhi.2_Missense_Mutation_p.P1429L|SLC19A1_uc010gpy.1_Intron|COL18A1_uc002zhj.2_Missense_Mutation_p.P230L|COL18A1_uc002zhk.2_Missense_Mutation_p.P74L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1667	Nonhelical region 11 (NC11).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCGCTGAAGCCCGGGGCACGC	0.552													29	24					0	0	0.000692331	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073328	17073328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:17073328G>A	uc002zlp.1	-	1	373	c.113C>T	c.(112-114)GCT>GTT	p.A38V		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	38					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CTGGACTGCAGCCAAGCTGCT	0.647													188	356					0	0	0.000781405	0	0
IL17RA	23765	broad.mit.edu	37	22	17578741	17578741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:17578741C>T	uc002zly.2	+	3	351	c.218C>T	c.(217-219)CCA>CTA	p.P73L	IL17RA_uc010gqt.2_Missense_Mutation_p.P73L	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	73	Extracellular (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		CCCTCCTCCCCAAAGGACCTG	0.572													139	240					0	0	0.000781405	0	0
CECR2	27443	broad.mit.edu	37	22	18028461	18028461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:18028461G>A	uc010gqw.1	+	16	3544	c.3418G>A	c.(3418-3420)GGC>AGC	p.G1140S	CECR2_uc010gqv.1_Missense_Mutation_p.G998S|CECR2_uc002zml.2_Missense_Mutation_p.G999S|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1182					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		TCCCCCAAGGGGCTTTCAGTC	0.592													48	93					0	0	0.000781405	0	0
MICAL3	57553	broad.mit.edu	37	22	18368808	18368808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:18368808G>A	uc002zng.3	-	16	2430	c.2077C>T	c.(2077-2079)CCT>TCT	p.P693S	MICAL3_uc011agl.1_Missense_Mutation_p.P693S|MICAL3_uc002znh.2_Missense_Mutation_p.P693S|MICAL3_uc002znj.1_Missense_Mutation_p.P393S|MICAL3_uc002znk.1_Missense_Mutation_p.P693S|MICAL3_uc002znl.1_Missense_Mutation_p.P326S|MICAL3_uc002znm.2_Missense_Mutation_p.P194S|MICAL3_uc010grf.2_Missense_Mutation_p.P693S	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	693						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TGGCCCCGAGGAGCTTCCTCC	0.597													269	416					0	0	0.000781405	0	0
CLTCL1	8218	broad.mit.edu	37	22	19170972	19170972	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:19170972G>T	uc002zpb.2	-	31	4833	c.4758C>A	c.(4756-4758)GCC>GCA	p.A1586A	CLTCL1_uc011agv.1_Silent_p.A1529A|CLTCL1_uc011agw.1_Silent_p.A1565A|CLTCL1_uc011agt.1_Silent_p.A377A|CLTCL1_uc011agu.1_Silent_p.A283A	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1586	Proximal segment.|Trimerization (By similarity).|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					TGTGCCTCCAGGCCAGCTCAA	0.612			T	?	ALCL								121	231					2.20518e-70	1.5573e-69	0.000781405	1	0
COMT	1312	broad.mit.edu	37	22	19951785	19951785	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:19951785G>A	uc002zqu.2	+	5	827	c.578G>A	c.(577-579)TGG>TAG	p.W193*	COMT_uc002zqt.2_Nonsense_Mutation_p.W193*|COMT_uc002zqv.2_Nonsense_Mutation_p.W193*|COMT_uc002zqw.2_Nonsense_Mutation_p.W193*|COMT_uc011ahd.1_Nonsense_Mutation_p.W193*|COMT_uc002zqx.2_Nonsense_Mutation_p.W193*	NM_000754	NP_000745	P21964	COMT_HUMAN	catechol-O-methyltransferase isoform MB-COMT	193					neurotransmitter biosynthetic process|neurotransmitter catabolic process|xenobiotic metabolic process	cytosol|integral to membrane|intracellular membrane-bounded organelle|microsome|plasma membrane|soluble fraction	catechol O-methyltransferase activity|magnesium ion binding|protein binding			ovary(1)	1	Colorectal(54;0.0993)				Carbidopa(DB00190)|Conjugated Estrogens(DB00286)|Diethylstilbestrol(DB00255)|Dobutamine(DB00841)|Dopamine(DB00988)|Entacapone(DB00494)|Folic Acid(DB00158)|L-Valine(DB00161)|Levodopa(DB01235)|Methyldopa(DB00968)|Modafinil(DB00745)|Morphine(DB00295)|S-Adenosylmethionine(DB00118)|Tolcapone(DB00323)	CTCGACCACTGGAAGGACCGG	0.587													249	395					0	0	0.000781405	0	0
HIC2	23119	broad.mit.edu	37	22	21800779	21800779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:21800779C>T	uc002zur.3	+	3	1825	c.1595C>T	c.(1594-1596)CCC>CTC	p.P532L	HIC2_uc002zus.3_Missense_Mutation_p.P532L	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	532	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				CTGACACGGCCCTTCCCCTGC	0.637													200	353					0	0	0.000781405	0	0
LOC96610	96610	broad.mit.edu	37	22	22664186	22664186	+	RNA	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:22664186A>G	uc011aim.1	+	30		c.2043A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CAGATCAAGAAAGCACTCTGA	0.498													4	331					0	0	0.00116845	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398													3	79					0	0	6.4e-05	0	0
RTDR1	27156	broad.mit.edu	37	22	23406136	23406136	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:23406136G>A	uc002zwt.2	-	5	755	c.597C>T	c.(595-597)CTC>CTT	p.L199L		NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	199							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		TGGCGCTGAGGAGCTTCTGCT	0.607													133	267					0	0	0.000781405	0	0
SGSM1	129049	broad.mit.edu	37	22	25294154	25294154	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:25294154C>T	uc003abg.2	+	20	2560	c.2403C>T	c.(2401-2403)CCC>CCT	p.P801P	SGSM1_uc003abh.2_Silent_p.P740P|SGSM1_uc010guu.1_Silent_p.P746P|SGSM1_uc003abj.2_Silent_p.P685P|SGSM1_uc003abi.1_Silent_p.P721P	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	801	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GGAACACCCCCACGGTGCTGC	0.632													125	259					0	0	0.000781405	0	0
SGSM1	129049	broad.mit.edu	37	22	25315917	25315917	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:25315917G>A	uc003abg.2	+	25	3472	c.3315G>A	c.(3313-3315)TTG>TTA	p.L1105L	SGSM1_uc003abh.2_Silent_p.L1044L|SGSM1_uc010guu.1_Silent_p.L1050L|SGSM1_uc003abj.2_Silent_p.L989L|SGSM1_uc003abi.1_Silent_p.L1025L	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	1105						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ACATCATTTTGGAGAACAACA	0.522													20	31					0	0	0.000958276	0	0
CRYBB3	1417	broad.mit.edu	37	22	25597350	25597350	+	Translation_Start_Site	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:25597350G>A	uc003abo.1	+	2	59	c.-13G>A	c.(-15--11)AGGTG>AGATG			NM_004076	NP_004067	P26998	CRBB3_HUMAN	crystallin, beta B3						visual perception		protein binding|structural constituent of eye lens				0						GAAGCCAGAGGTGTTCCTGGG	0.577													196	380					0	0	0.000781405	0	0
MYO18B	84700	broad.mit.edu	37	22	26159234	26159234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:26159234C>T	uc003abz.1	+	3	326	c.76C>T	c.(76-78)CCC>TCC	p.P26S	MYO18B_uc003aca.1_5'UTR|MYO18B_uc010guy.1_5'UTR|MYO18B_uc010guz.1_5'UTR|MYO18B_uc011aka.1_5'UTR	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	26						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACCATCCTCGCCCCCTCCTCT	0.547													76	96					0	0	0.000781405	0	0
MYO18B	84700	broad.mit.edu	37	22	26423107	26423107	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:26423107C>T	uc003abz.1	+	43	7417	c.7167C>T	c.(7165-7167)TCC>TCT	p.S2389S	MYO18B_uc003aca.1_Silent_p.S2270S|MYO18B_uc010guy.1_Silent_p.S2271S|MYO18B_uc010guz.1_Silent_p.S2269S|MYO18B_uc011aka.1_Silent_p.S1543S|MYO18B_uc011akb.1_Silent_p.S1902S|MYO18B_uc010gva.1_Silent_p.S372S|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2389						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GTCTGGAGTCCTCTGTGGACG	0.597													48	78					0	0	0.000781405	0	0
SEZ6L	23544	broad.mit.edu	37	22	26709835	26709835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:26709835G>A	uc003acb.2	+	9	2138	c.1982G>A	c.(1981-1983)GGA>GAA	p.G661E	SEZ6L_uc003acc.2_Missense_Mutation_p.G661E|SEZ6L_uc011akc.1_Missense_Mutation_p.G661E|SEZ6L_uc003acd.2_Missense_Mutation_p.G661E|SEZ6L_uc011akd.1_Missense_Mutation_p.G661E|SEZ6L_uc003ace.2_Missense_Mutation_p.G661E|SEZ6L_uc003acf.1_Missense_Mutation_p.G434E|SEZ6L_uc010gvc.1_Missense_Mutation_p.G434E	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	661	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ATCCACGTGGGAGAAGAGAAA	0.488													72	126					0	0	0.000781405	0	0
TPST2	8459	broad.mit.edu	37	22	26936874	26936874	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:26936874C>T	uc003acv.2	-	2	891	c.723G>A	c.(721-723)CTG>CTA	p.L241L	TPST2_uc003acw.2_Silent_p.L241L|TPST2_uc003acx.2_Silent_p.L241L|TPST2_uc011akf.1_Silent_p.L241L	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	241	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						GGTGCAGCACCAGCTGCTCGT	0.602													151	380					0	0	0.000781405	0	0
CRYBA4	1413	broad.mit.edu	37	22	27019245	27019245	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:27019245C>T	uc003acz.3	+	3	122	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	29	Beta/gamma crystallin 'Greek key' 1.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						GGCACGAGTTCACGGCCGAGT	0.592													160	271					0	0	0.000781405	0	0
MN1	4330	broad.mit.edu	37	22	28196393	28196393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:28196393G>A	uc003adj.2	-	1	1094	c.139C>T	c.(139-141)CCT>TCT	p.P47S		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	47							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GGATCCACAGGGCCAGGGGGC	0.647			T	ETV6	AML|meningioma								293	509					0	0	0.000781405	0	0
LIF	3976	broad.mit.edu	37	22	30639887	30639888	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:30639887_30639888CG>AT	uc003agz.2	-	3	473_474	c.361_362CG>AT	c.(361-363)CGG>ATG	p.R121M	LIF_uc011aks.1_Missense_Mutation_p.P61H|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	121					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			CTTCTGGTCCCGGGTGATGTTG	0.639													8	546					0	0	6.4e-05	0	0
DUSP18	150290	broad.mit.edu	37	22	31059736	31059736	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:31059736A>G	uc003aiu.2	-	2	756	c.255T>C	c.(253-255)CCT>CCC	p.P85P	SLC35E4_uc003ait.2_Intron|DUSP18_uc010gwa.1_Intron|DUSP18_uc003aiw.1_Silent_p.P85P	NM_152511	NP_689724	Q8NEJ0	DUS18_HUMAN	dual specificity phosphatase 18	85	Tyrosine-protein phosphatase.					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0						GGTCAGCAATAGGGTCAAAGA	0.547													4	718					0	0	0.00024832	0	0
PLA2G3	50487	broad.mit.edu	37	22	31535838	31535838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:31535838G>A	uc003aka.2	-	1	632	c.503C>T	c.(502-504)TCC>TTC	p.S168F		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	168	Phospholipase A2-like.				cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						cagctccgAGGAGTTCCCAGC	0.308													121	163					0	0	0.000781405	0	0
DEPDC5	9681	broad.mit.edu	37	22	32270373	32270373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:32270373G>A	uc003als.2	+	35	3727	c.3585G>A	c.(3583-3585)ATG>ATA	p.M1195I	DEPDC5_uc011als.1_Missense_Mutation_p.M1126I|DEPDC5_uc011alu.1_Missense_Mutation_p.M1226I|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.M1217I|DEPDC5_uc003alu.2_Missense_Mutation_p.M644I|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Missense_Mutation_p.M493I|DEPDC5_uc011alx.1_Missense_Mutation_p.M43I|DEPDC5_uc010gwk.2_Missense_Mutation_p.M221I|DEPDC5_uc011aly.1_Missense_Mutation_p.M43I	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1195	DEP.				intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CACAGGCGATGGCCATTGACA	0.557													12	23					0	0	0.000151284	0	0
BPIL2	254240	broad.mit.edu	37	22	32843213	32843213	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:32843213G>A	uc003amn.2	-	3	360	c.360C>T	c.(358-360)TTC>TTT	p.F120F	BPIL2_uc010gwo.2_5'UTR|BPIL2_uc011amb.1_5'UTR	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	120						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						GTGGAGACTCGAACCCCCAGT	0.453													54	123					0	0	0.000781405	0	0
FBXO7	25793	broad.mit.edu	37	22	32875101	32875101	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:32875101A>G	uc003amq.2	+	2	539	c.256A>G	c.(256-258)AAT>GAT	p.N86D	FBXO7_uc003amp.1_Intron|FBXO7_uc003amr.2_Intron|FBXO7_uc003ams.2_Intron|FBXO7_uc003amt.2_Intron|FBXO7_uc003amu.2_5'UTR	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	86					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						TCCAGCGCCTAATATACCTTC	0.453													314	577					0	0	0.000781405	0	0
SYN3	8224	broad.mit.edu	37	22	33402357	33402357	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:33402357G>A	uc003amx.2	-	1	450	c.291C>T	c.(289-291)ATC>ATT	p.I97I	SYN3_uc003amy.2_Silent_p.I97I|SYN3_uc003amz.2_Silent_p.I97I	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	97	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						GGGCATCATCGATCACCAACA	0.542													174	271					0	0	0.000781405	0	0
HMGXB4	10042	broad.mit.edu	37	22	35660805	35660805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:35660805G>A	uc003anl.2	+	5	598	c.424G>A	c.(424-426)GAG>AAG	p.E142K	HMGXB4_uc011amh.1_Missense_Mutation_p.E33K|HMGXB4_uc003ank.2_Missense_Mutation_p.E33K	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	142					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						AAGCCATTCGGAGAGTAAAAA	0.502													151	207					0	0	0.000781405	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334334	37334334	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:37334334G>A	uc003aqa.3	+	14	2701	c.2484G>A	c.(2482-2484)CTG>CTA	p.L828L	CSF2RB_uc003aqc.3_Silent_p.L834L	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	828	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	TCCCCGGCCTGGGGCCCGGCC	0.637													326	594					0	0	0.000781405	0	0
NOL12	79159	broad.mit.edu	37	22	38084882	38084882	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:38084882G>C	uc003atp.2	+	4	320	c.264G>C	c.(262-264)TTG>TTC	p.L88F	NOL12_uc011anm.1_Missense_Mutation_p.L88F|NOL12_uc003ato.1_RNA|TRIOBP_uc003atq.1_5'UTR	NM_024313	NP_077289	Q9UGY1	NOL12_HUMAN	nucleolar protein 12	88	Potential.					nucleolus	rRNA binding				0	Melanoma(58;0.0574)					TGGACCGGTTGGTGACAGCAA	0.642													4	784					0	0	0.00024832	0	0
DDX17	10521	broad.mit.edu	37	22	38894509	38894509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:38894509G>A	uc003avy.3	-	4	711	c.608C>T	c.(607-609)CCG>CTG	p.P203L	DDX17_uc003avx.3_Missense_Mutation_p.P203L|DDX17_uc011anu.1_Missense_Mutation_p.P116L	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	124	Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					AAGAGCCAACGGAAATCCCTG	0.438													166	242					0	0	0.000781405	0	0
MGAT3	4248	broad.mit.edu	37	22	39884653	39884653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:39884653C>T	uc003axv.3	+	2	1540	c.1301C>T	c.(1300-1302)TCC>TTC	p.S434F	MGAT3_uc010gxy.2_Missense_Mutation_p.S434F	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	434	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					AAGCTCGTGTCCGCCCAGAAT	0.662													155	219					0	0	0.000781405	0	0
MGAT3	4248	broad.mit.edu	37	22	39884729	39884729	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:39884729C>T	uc003axv.3	+	2	1616	c.1377C>T	c.(1375-1377)ATC>ATT	p.I459I	MGAT3_uc010gxy.2_Silent_p.I459I	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	459	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GCGGCCTGATCCGCACCGGGG	0.627													115	177					0	0	0.000781405	0	0
CACNA1I	8911	broad.mit.edu	37	22	39996602	39996602	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:39996602G>A	uc003ayc.2	+	3	426	c.426G>A	c.(424-426)AAG>AAA	p.K142K	CACNA1I_uc003ayd.2_Silent_p.K142K|CACNA1I_uc003aye.2_Silent_p.K57K|CACNA1I_uc003ayf.2_Silent_p.K57K	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	142	I.|Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TTTTTGGCAAGAAGTGCTACC	0.562													137	218					0	0	0.000781405	0	0
FAM109B	150368	broad.mit.edu	37	22	42473325	42473325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:42473325C>T	uc003bbz.2	+	3	215	c.28C>T	c.(28-30)CAC>TAC	p.H10Y	C22orf32_uc003bca.2_5'Flank	NM_001002034	NP_001002034	Q6ICB4	SESQ2_HUMAN	hypothetical protein LOC150368	10					endosome organization|receptor recycling|retrograde transport, endosome to Golgi	clathrin-coated vesicle|early endosome|recycling endosome|trans-Golgi network	protein homodimerization activity				0						GAGTGTAGCCCACTATGCACT	0.542													240	452					0	0	0.000781405	0	0
POLDIP3	84271	broad.mit.edu	37	22	42981923	42981924	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:42981923_42981924CC>TT	uc003bcu.2	-	9	1238_1239	c.1139_1140GG>AA	c.(1138-1140)AGG>AAA	p.R380K	POLDIP3_uc011app.1_3'UTR|POLDIP3_uc003bcv.2_Missense_Mutation_p.R351K|POLDIP3_uc011apq.1_Missense_Mutation_p.R397K|POLDIP3_uc010gza.2_RNA|POLDIP3_uc011apr.1_RNA|POLDIP3_uc010gzb.1_Intron	NM_032311	NP_115687	Q9BY77	PDIP3_HUMAN	DNA polymerase delta interacting protein 3	380					positive regulation of translation	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding				0						CAGAGTTCACCCTGCGAGGCAG	0.554													150	235					0	0	6.4e-05	0	0
EFCAB6	64800	broad.mit.edu	37	22	43950818	43950818	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:43950818C>T	uc003bdy.1	-	27	3794	c.3579G>A	c.(3577-3579)ACG>ACA	p.T1193T	EFCAB6_uc003bdz.1_Silent_p.T1041T|EFCAB6_uc010gzi.1_Silent_p.T1041T|EFCAB6_uc010gzj.1_Silent_p.T419T	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1193	EF-hand 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AGATGGTGTTCGTTTTCATGG	0.522													288	448					0	0	0.000781405	0	0
SULT4A1	25830	broad.mit.edu	37	22	44234799	44234799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:44234799C>T	uc003bee.1	-	4	572	c.456G>A	c.(454-456)ATG>ATA	p.M152I	SULT4A1_uc003bed.1_Missense_Mutation_p.M73I|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	152					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		CTCGGTAGCTCATGGTCCGCA	0.527													216	355					0	0	0.000781405	0	0
CELSR1	9620	broad.mit.edu	37	22	46760508	46760508	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:46760508G>T	uc003bhw.1	-	33	8680	c.8680C>A	c.(8680-8682)CGC>AGC	p.R2894S		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2894	Cytoplasmic (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TGCTCCTCGCGGTGCAGCTCC	0.697													11	576					0.00136819	0.0093286	0.00136819	1	0
CELSR1	9620	broad.mit.edu	37	22	46804984	46804984	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:46804984G>T	uc003bhw.1	-	9	5135	c.5135C>A	c.(5134-5136)CCC>CAC	p.P1712H	CELSR1_uc011arc.1_Missense_Mutation_p.P25H	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1712	Extracellular (Potential).|Laminin G-like 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CAGGTACCAGGGCACAGAGAT	0.637													11	555					0.000673444	0.0046179	0.000673444	1	0
CERK	64781	broad.mit.edu	37	22	47085936	47085936	+	Silent	SNP	G	A	A	rs145641716		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:47085936G>A	uc003bia.2	-	12	1601	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S	CERK_uc010hae.2_Silent_p.S300S	NM_022766	NP_073603	Q8TCT0	CERK1_HUMAN	ceramide kinase	498					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|ceramide metabolic process	integral to membrane of membrane fraction|membrane|nucleus	ATP binding|ceramide kinase activity|diacylglycerol kinase activity|magnesium ion binding			skin(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CGCAGTTCCAGGAGCTGTTGG	0.652													171	263					0	0	0.000781405	0	0
PLXNB2	23654	broad.mit.edu	37	22	50720043	50720043	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:50720043G>A	uc003bkv.3	-	21	3580	c.3474C>T	c.(3472-3474)CCC>CCT	p.P1158P	PLXNB2_uc003bkt.1_5'UTR|PLXNB2_uc003bku.1_Silent_p.P143P	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1158	Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCCGCCGCTTGGGCGGGGGCT	0.692													219	382					0	0	0.000781405	0	0
MIOX	55586	broad.mit.edu	37	22	50927488	50927488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:50927488C>T	uc003bll.1	+	6	542	c.428C>T	c.(427-429)ACC>ATC	p.T143I	MIOX_uc003blm.1_Missense_Mutation_p.T143I|MIOX_uc003bln.1_Missense_Mutation_p.P154S	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	143					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GTCGGCGACACCTTCCCCGTC	0.652													80	160					0	0	0.000781405	0	0
CHL1	10752	broad.mit.edu	37	3	391211	391211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:391211C>T	uc003bou.2	+	9	1241	c.970C>T	c.(970-972)CAC>TAC	p.H324Y	CHL1_uc003bot.2_Missense_Mutation_p.H340Y|CHL1_uc003bow.1_Missense_Mutation_p.H324Y|CHL1_uc011asi.1_Missense_Mutation_p.H340Y	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	324	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TCACGATTTTCACGTTATAGT	0.393													36	101					0	0	0.00128727	0	0
CHL1	10752	broad.mit.edu	37	3	447275	447275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:447275G>A	uc003bou.2	+	27	3779	c.3508G>A	c.(3508-3510)GGA>AGA	p.G1170R	CHL1_uc003bot.2_Missense_Mutation_p.G1186R|CHL1_uc011asi.1_Missense_Mutation_p.G1133R	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	1170	Cytoplasmic (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		ATACGGAGAGGGAGACCATGG	0.463													12	34					0	0	0.000219431	0	0
TADA3	10474	broad.mit.edu	37	3	9833128	9833129	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:9833128_9833129GG>AA	uc003bsx.1	-	2	570_571	c.22_23CC>TT	c.(22-24)CCC>TTC	p.P8F	TADA3_uc010hcn.1_Missense_Mutation_p.P8F|TADA3_uc003bsy.2_Missense_Mutation_p.P8F|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	8					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						GAACTGCAAGGGGCAGTCTTTC	0.564													80	202					0	0	6.4e-05	0	0
PRRT3	285368	broad.mit.edu	37	3	9991614	9991615	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:9991614_9991615CG>AT	uc003bul.2	-	2	315_316	c.185_186CG>AT	c.(184-186)CCG>CAT	p.P62H	CIDEC_uc003bto.2_Intron|PRRT3_uc003buk.2_RNA|PRRT3_uc003bum.2_Missense_Mutation_p.P62H	NM_207351	NP_997234	Q5FWE3	PRRT3_HUMAN	proline-rich transmembrane protein 3 precursor	62	Extracellular (Potential).					integral to membrane					0						TGGGGTTCTCCGGGAACACGTC	0.614													12	891					0	0	6.4e-05	0	0
IRAK2	3656	broad.mit.edu	37	3	10280488	10280489	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:10280488_10280489CC>TT	uc003bve.1	+	12	1606_1607	c.1530_1531CC>TT	c.(1528-1533)CTCCCT>CTTTCT	p.P511S		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	511					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						AGACGTTGCTCCCTTGGAGTGG	0.559													325	498					0	0	6.4e-05	0	0
ATP2B2	491	broad.mit.edu	37	3	10370570	10370570	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:10370570C>T	uc003bvt.2	-	23	4099	c.3660G>A	c.(3658-3660)ACG>ACA	p.T1220T	ATP2B2_uc003bvv.2_Silent_p.T1175T|ATP2B2_uc003bvw.2_Silent_p.T1175T|ATP2B2_uc003bvs.2_RNA|ATP2B2_uc010hdo.2_Silent_p.T925T|hsa-mir-378b|MI0014154_5'Flank	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1220	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TTGTGTCGGTCGTCAGGTTGA	0.602													180	314					0	0	0.000781405	0	0
SYN2	6854	broad.mit.edu	37	3	12203520	12203520	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:12203520G>T	uc003bwm.2	+	11	1010	c.846G>T	c.(844-846)GTG>GTT	p.V282V	SYN2_uc003bwl.1_Silent_p.V282V|SYN2_uc003bwn.2_5'UTR|TIMP4_uc003bwo.2_5'Flank	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	282					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGGTCAAAGTGGAAAACCACT	0.532													14	946					0.000151284	0.00104751	0.000151284	1	0
CAND2	23066	broad.mit.edu	37	3	12859246	12859246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:12859246G>A	uc003bxk.2	+	10	2864	c.2815G>A	c.(2815-2817)GCC>ACC	p.A939T	CAND2_uc003bxj.2_Missense_Mutation_p.A846T	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	939	HEAT 20.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						GGACATCTGGGCCTTGCTGTT	0.667													360	562					0	0	0.000781405	0	0
IQSEC1	9922	broad.mit.edu	37	3	12983084	12983084	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:12983084A>C	uc003bxt.2	-	2	356	c.347T>G	c.(346-348)CTG>CGG	p.L116R	IQSEC1_uc003bxu.3_5'UTR|IQSEC1_uc011auw.1_Missense_Mutation_p.L102R	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	116					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CTTGTCCTGCAGGTCCGAGGA	0.632													79	91					0	0	0.000781405	0	0
NUP210	23225	broad.mit.edu	37	3	13359188	13359188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:13359188G>A	uc003bxv.1	-	40	5740	c.5657C>T	c.(5656-5658)TCC>TTC	p.S1886F		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1886	Cytoplasmic (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGCCTAGTGGGAGGCATAGGC	0.612													43	58					0	0	0.000509022	0	0
WNT7A	7476	broad.mit.edu	37	3	13896034	13896034	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:13896034G>A	uc003bye.1	-	3	870	c.565C>T	c.(565-567)CGA>TGA	p.R189*		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	189					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						CCTACCTTTCGGCCTGCCTCG	0.443													312	523					0	0	0.000781405	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15126324	15126324	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:15126324G>A	uc003bzm.1	-	8	1130	c.516C>T	c.(514-516)ATC>ATT	p.I172I	ZFYVE20_uc010hek.1_Silent_p.I172I|ZFYVE20_uc011avn.1_Silent_p.I172I	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	172	FYVE-type.|Necessary for the correct targeting to endosomes.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						GGCGGTTCCGGATGCTGAACT	0.532													118	170					0	0	0.000781405	0	0
PLCL2	23228	broad.mit.edu	37	3	17053498	17053498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:17053498G>A	uc011awc.1	+	5	2741	c.2636G>A	c.(2635-2637)GGA>GAA	p.G879E	PLCL2_uc011awd.1_Missense_Mutation_p.G761E	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	887					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AGAGGAGGAGGAAAGCCTCAT	0.478													24	28					0	0	0.00047179	0	0
CCR4	1233	broad.mit.edu	37	3	32995215	32995215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:32995215G>A	uc003cfg.1	+	2	469	c.301G>A	c.(301-303)GAC>AAC	p.D101N		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	101	Extracellular (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						CTATGCAGCAGACCAGTGGGT	0.493													171	209					0	0	0.000781405	0	0
SUSD5	26032	broad.mit.edu	37	3	33249379	33249379	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:33249379G>A	uc003cfo.1	-	3	748	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	110	Extracellular (Potential).|Link.				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						CAGCTCTCATGATTTGCTGTT	0.418													109	198					0	0	0.000781405	0	0
TRANK1	9881	broad.mit.edu	37	3	36898464	36898464	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:36898464T>G	uc003cgj.2	-	3	1269	c.967A>C	c.(967-969)AAG>CAG	p.K323Q		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	873					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GCAATGATCTTCTCAGGGTTC	0.527													12	15					0	0	0.00136819	0	0
SCN5A	6331	broad.mit.edu	37	3	38647610	38647610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:38647610C>T	uc003cio.2	-	10	1364	c.1170G>A	c.(1168-1170)ATG>ATA	p.M390I	SCN5A_uc003cin.2_Missense_Mutation_p.M390I|SCN5A_uc003cil.3_Missense_Mutation_p.M390I|SCN5A_uc010hhi.2_Missense_Mutation_p.M390I|SCN5A_uc010hhk.2_Missense_Mutation_p.M390I|SCN5A_uc011ayr.1_Missense_Mutation_p.M390I|SCN5A_uc010hhj.1_Missense_Mutation_p.M1I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	390	Helical; Name=S6 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGAAGAAGATCATGTAGATCT	0.567													131	236					0	0	0.000781405	0	0
SCN10A	6336	broad.mit.edu	37	3	38770082	38770082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:38770082G>A	uc003ciq.2	-	15	2591	c.2591C>T	c.(2590-2592)TCC>TTC	p.S864F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	864	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GAGGCATATGGATTTTTGGCC	0.527													30	68					0	0	0.000409698	0	0
SCN11A	11280	broad.mit.edu	37	3	38951638	38951638	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:38951638C>T	uc011ays.1	-	8	1219	c.1020G>A	c.(1018-1020)ACG>ACA	p.T340T		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	340	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.T340T(1)		skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGTCAAAATTCGTATAATTAT	0.358													11	20					0	0	0.000151284	0	0
XIRP1	165904	broad.mit.edu	37	3	39230164	39230165	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:39230164_39230165CG>AT	uc003cjk.1	-	2	993_994	c.772_773CG>AT	c.(772-774)CGG>ATG	p.R258M	XIRP1_uc003cji.2_Missense_Mutation_p.R258M|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	258							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GATCTCCTCCCGGCATGCGGCC	0.614													12	719					0	0	6.4e-05	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307002	39307002	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:39307002C>T	uc003cjl.2	-	2	1091	c.999G>A	c.(997-999)AGG>AGA	p.R333R		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	333	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CACTTCCATGCCTGCTCCTTT	0.483													106	190					0	0	0.000781405	0	0
SNRK	54861	broad.mit.edu	37	3	43373670	43373671	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:43373670_43373671GT>AA	uc003cms.3	+	4	931_932	c.599_600GT>AA	c.(598-600)AGT>AAA	p.S200K	SNRK_uc003cmt.3_Missense_Mutation_p.S200K|SNRK_uc010hik.2_Missense_Mutation_p.S200K|SNRK_uc011azr.1_5'UTR|SNRK_uc003cmu.2_Missense_Mutation_p.S200K	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	200	Protein kinase.				myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		GATATTTGGAGTCTGGGAGTGA	0.351													30	74					0	0	6.4e-05	0	0
ZNF501	115560	broad.mit.edu	37	3	44776262	44776262	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:44776262C>G	uc003cnu.1	+	3	750	c.349C>G	c.(349-351)CAG>GAG	p.Q117E	ZNF501_uc003cnv.1_Missense_Mutation_p.Q117E	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	117	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		AGCCTTTTGTCAGAGCCCATC	0.393													4	388					0	0	0.00024832	0	0
FYCO1	79443	broad.mit.edu	37	3	46011172	46011172	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:46011172G>A	uc003cpb.3	-	7	831	c.625C>T	c.(625-627)CTG>TTG	p.L209L	FYCO1_uc011bal.1_Silent_p.L209L	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	209					transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CTTACCTGCAGGTAGCTGCTC	0.562													104	191					0	0	0.000781405	0	0
FYCO1	79443	broad.mit.edu	37	3	46023136	46023136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:46023136C>T	uc003cpb.3	-	3	294	c.88G>A	c.(88-90)GAA>AAA	p.E30K	FYCO1_uc011bal.1_Missense_Mutation_p.E30K	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	30	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		TCCCCTGCTTCCTGAAATTCT	0.388													183	296					0	0	0.000781405	0	0
CCR3	1232	broad.mit.edu	37	3	46306989	46306989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:46306989C>T	uc003cpg.1	+	4	883	c.340C>T	c.(340-342)CAC>TAC	p.H114Y	CCR3_uc003cpi.1_Missense_Mutation_p.H114Y|CCR3_uc003cpj.1_Missense_Mutation_p.H114Y|CCR3_uc003cpk.1_Missense_Mutation_p.H135Y|CCR3_uc010hjb.1_Missense_Mutation_p.H132Y|CCR3_uc003cpl.1_Missense_Mutation_p.H147Y	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	114	Helical; Name=3; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		AGGGTTTTATCACACAGGCTT	0.512													50	61					0	0	0.000781405	0	0
CCR3	1232	broad.mit.edu	37	3	46307643	46307643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:46307643C>T	uc003cpg.1	+	4	1537	c.994C>T	c.(994-996)CCT>TCT	p.P332S	CCR3_uc003cpi.1_Missense_Mutation_p.P332S|CCR3_uc003cpj.1_Missense_Mutation_p.P332S|CCR3_uc003cpk.1_Missense_Mutation_p.P353S|CCR3_uc010hjb.1_Missense_Mutation_p.P350S|CCR3_uc003cpl.1_Missense_Mutation_p.P365S	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	332	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CCCATTCCTTCCTAGTGAGAA	0.502													14	30					0	0	0.000308642	0	0
RTP3	83597	broad.mit.edu	37	3	46541994	46541994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:46541994G>A	uc003cps.1	+	2	372	c.304G>A	c.(304-306)GAG>AAG	p.E102K		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	102	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		ACCTCTGTTTGAGGACCCTGA	0.468													388	532					0	0	0.000781405	0	0
COL7A1	1294	broad.mit.edu	37	3	48612535	48612535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:48612535G>A	uc003ctz.2	-	75	6242	c.6241C>T	c.(6241-6243)CCT>TCT	p.P2081S		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2081	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGGTTCCAGGGAGTCCAGGA	0.647													302	411					0	0	0.000781405	0	0
COL7A1	1294	broad.mit.edu	37	3	48623787	48623787	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:48623787G>A	uc003ctz.2	-	26	3529	c.3528C>T	c.(3526-3528)CCC>CCT	p.P1176P		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1176	Nonhelical region (NC1).|VWFA 2.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCTCACGGATGGGGCTGAATA	0.587													379	586					0	0	0.000781405	0	0
CELSR3	1951	broad.mit.edu	37	3	48688503	48688503	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:48688503G>A	uc003cul.2	-	15	6473	c.6192C>T	c.(6190-6192)TTC>TTT	p.F2064F	CELSR3_uc003cuf.1_Silent_p.F2134F|CELSR3_uc010hkg.2_Silent_p.F42F	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2064	Extracellular (Potential).|EGF-like 8; calcium-binding.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GTCGGTAGTGGAACTCCTGTT	0.602													188	282					0	0	0.000781405	0	0
LAMB2	3913	broad.mit.edu	37	3	49159008	49159008	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:49159008C>A	uc003cwe.2	-	31	5417	c.5118G>T	c.(5116-5118)CTG>CTT	p.L1706L	USP19_uc003cvz.3_5'Flank|USP19_uc011bcg.1_5'Flank|USP19_uc003cwb.2_5'Flank|USP19_uc003cwd.1_5'Flank|USP19_uc011bch.1_5'Flank|USP19_uc011bci.1_5'Flank	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1706	Potential.|Domain I.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACTGATCACCCAGAGGACCGC	0.612													13	562					0.00010058	0.000696735	0.00136819	1	0
LAMB2	3913	broad.mit.edu	37	3	49162765	49162765	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:49162765C>A	uc003cwe.2	-	19	2940	c.2641G>T	c.(2641-2643)GGG>TGG	p.G881W	LAMB2_uc003cwf.1_Missense_Mutation_p.G881W	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	881	Laminin EGF-like 8.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCTGCATGCCCATTGCAGACA	0.602													10	929					0.000673444	0.0046179	0.000673444	1	0
DAG1	1605	broad.mit.edu	37	3	49548071	49548072	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:49548071_49548072CC>TT	uc003cxc.3	+	2	522_523	c.104_105CC>TT	c.(103-105)CCC>CTT	p.P35L		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	35	Required for laminin recognition.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		CCCAGTGAACCCTCAGAGGCTG	0.599													48	111					0	0	6.4e-05	0	0
CAMKV	79012	broad.mit.edu	37	3	49897933	49897933	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:49897933G>A	uc003cxt.1	-	9	1018	c.825C>T	c.(823-825)ATC>ATT	p.I275I	CAMKV_uc011bcy.1_Silent_p.I200I|CAMKV_uc003cxv.1_Silent_p.I247I|CAMKV_uc003cxw.1_Silent_p.I107I|CAMKV_uc003cxx.1_Silent_p.I107I|CAMKV_uc003cxu.2_Silent_p.I275I|CAMKV_uc011bcz.1_Silent_p.I238I|CAMKV_uc011bda.1_Silent_p.I232I|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	275	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CTTCTGCAGTGATCCGCTGGT	0.597													54	93					0	0	0.000781405	0	0
RBM5	10181	broad.mit.edu	37	3	50129560	50129560	+	Silent	SNP	G	A	A	rs146767621	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:50129560G>A	uc003cyg.2	+	3	250	c.102G>A	c.(100-102)CGG>CGA	p.R34R	RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA|RBM5_uc003cyf.2_Silent_p.R34R|RBM5_uc011bdj.1_Missense_Mutation_p.G12E|RBM5_uc011bdk.1_5'UTR	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	34					apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GAAGCAGGCGGAGGGACTCAG	0.498													182	280					0	0	0.000781405	0	0
RBM5	10181	broad.mit.edu	37	3	50129563	50129563	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:50129563G>T	uc003cyg.2	+	3	253	c.105G>T	c.(103-105)AGG>AGT	p.R35S	RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA|RBM5_uc003cyf.2_Missense_Mutation_p.R35S|RBM5_uc011bdj.1_Missense_Mutation_p.G13V|RBM5_uc011bdk.1_5'UTR	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	35					apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCAGGCGGAGGGACTCAGATT	0.498													184	272					1.38479e-102	9.80159e-102	0.000781405	1	0
DOCK3	1795	broad.mit.edu	37	3	51417591	51417591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:51417591C>T	uc011bds.1	+	52	5559	c.5536C>T	c.(5536-5538)CCT>TCT	p.P1846S		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1846						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CTTCCACCACCCTCTGGGTGA	0.602													147	210					0	0	0.000781405	0	0
TWF2	11344	broad.mit.edu	37	3	52264925	52264925	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52264925G>A	uc003ddd.2	-	6	721	c.570C>T	c.(568-570)CTC>CTT	p.L190L	TLR9_uc003ddb.2_5'UTR|TLR9_uc003ddc.1_5'Flank|TWF2_uc010hmc.2_Silent_p.L190L	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	190	ADF-H 2.					cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TGAGCTGCTGGAGTGCCCGCT	0.612													97	69					0	0	0.000781405	0	0
PPM1M	132160	broad.mit.edu	37	3	52281709	52281709	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52281709C>T	uc003ddf.3	+	4	491	c.126C>T	c.(124-126)ATC>ATT	p.I42I	PPM1M_uc011bed.1_Silent_p.I203I|PPM1M_uc010hmd.2_Silent_p.I42I|PPM1M_uc003ddg.3_5'UTR|PPM1M_uc003ddh.3_5'Flank			Q96MI6	PPM1M_HUMAN	RecName: Full=Protein phosphatase 1M;          EC=3.1.3.16; AltName: Full=Protein phosphatase 2C isoform eta;          Short=PP2C-eta;          Short=PP2CE;	42	PP2C-like.				protein dephosphorylation	nucleus	CTD phosphatase activity|manganese ion binding				0				BRCA - Breast invasive adenocarcinoma(193;2.4e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)		ATGAGGTGATCGGGCGGGAGC	0.597													53	90					0	0	0.000781405	0	0
BAP1	8314	broad.mit.edu	37	3	52443604	52443604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52443604C>T	uc003ddx.2	-	3	203	c.88G>A	c.(88-90)GAG>AAG	p.E30K	PHF7_uc003ddy.2_5'Flank|PHF7_uc003ddz.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	30					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		TAGATCTCCTCCACTTGCACC	0.617			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								334	597					0	0	0.000781405	0	0
STAB1	23166	broad.mit.edu	37	3	52539159	52539159	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52539159G>A	uc003dej.2	+	13	1592	c.1518G>A	c.(1516-1518)AAG>AAA	p.K506K	STAB1_uc003dei.1_Silent_p.K506K	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	506	Extracellular (Potential).|FAS1 2.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGGATCCCAAGGTGAGCCAGC	0.617													336	527					0	0	0.000781405	0	0
STAB1	23166	broad.mit.edu	37	3	52547982	52547982	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52547982C>T	uc003dej.2	+	32	3506	c.3432C>T	c.(3430-3432)TTC>TTT	p.F1144F		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1144	FAS1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCAGCCTCTTCCGGGAATTGC	0.657													340	493					0	0	0.000781405	0	0
PBRM1	55193	broad.mit.edu	37	3	52595892	52595892	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52595892C>G	uc003des.2	-	25	4191	c.4179G>C	c.(4177-4179)ATG>ATC	p.M1393I	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.M1393I|PBRM1_uc003der.2_Missense_Mutation_p.M1361I|PBRM1_uc003det.2_Missense_Mutation_p.M1408I|PBRM1_uc003deu.2_Missense_Mutation_p.M1408I|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.M1393I|PBRM1_uc010hmk.1_Missense_Mutation_p.M1368I|PBRM1_uc003dey.2_Missense_Mutation_p.M1341I|PBRM1_uc003dez.1_Missense_Mutation_p.M1392I	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1393	HMG box.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TCACAGCCCTCATCTCACTGC	0.512			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								4	412					0	0	0.00024832	0	0
PBRM1	55193	broad.mit.edu	37	3	52620639	52620639	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52620639A>T	uc003des.2	-	20	3201	c.3189T>A	c.(3187-3189)TAT>TAA	p.Y1063*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.Y1063*|PBRM1_uc003der.2_Nonsense_Mutation_p.Y1031*|PBRM1_uc003det.2_Nonsense_Mutation_p.Y1078*|PBRM1_uc003deu.2_Nonsense_Mutation_p.Y1078*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.Y1063*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.Y1038*|PBRM1_uc003dey.2_Nonsense_Mutation_p.Y1038*|PBRM1_uc003dez.1_Nonsense_Mutation_p.Y1062*|PBRM1_uc003dfb.1_Nonsense_Mutation_p.Y975*|PBRM1_uc003dfa.1_Nonsense_Mutation_p.Y409*	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1063	BAH 1.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TTTTGGCAGAATACCGTGATT	0.458			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								58	82					0	0	0.000781405	0	0
PBRM1	55193	broad.mit.edu	37	3	52643485	52643485	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:52643485A>T	uc003des.2	-	16	2423	c.2411T>A	c.(2410-2412)TTA>TAA	p.L804*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.L804*|PBRM1_uc003der.2_Nonsense_Mutation_p.L772*|PBRM1_uc003det.2_Nonsense_Mutation_p.L819*|PBRM1_uc003deu.2_Nonsense_Mutation_p.L819*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.L804*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.L804*|PBRM1_uc003dey.2_Nonsense_Mutation_p.L804*|PBRM1_uc003dez.1_Nonsense_Mutation_p.L804*|PBRM1_uc003dfb.1_Nonsense_Mutation_p.L717*|PBRM1_uc003dfa.1_Nonsense_Mutation_p.L150*|PBRM1_uc003dfc.2_Nonsense_Mutation_p.L171*	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	804	Bromo 6.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		AATTTCTGCTAAAGAATCGCT	0.413			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								41	75					0	0	0.000374591	0	0
TKT	7086	broad.mit.edu	37	3	53269161	53269162	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:53269161_53269162CC>AA	uc003dgo.2	-	5	576_577	c.466_467GG>TT	c.(466-468)GGG>TTG	p.G156L	TKT_uc011beo.1_Missense_Mutation_p.G109L|TKT_uc003dgq.2_Missense_Mutation_p.G156L|TKT_uc011beq.1_Missense_Mutation_p.G164L|TKT_uc011ber.1_Intron|TKT_uc011bep.1_Missense_Mutation_p.G73L	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	156					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	TGACAGCTCCCCGTCTCCCAGC	0.599													11	499					0	0	6.4e-05	0	0
DCP1A	55802	broad.mit.edu	37	3	53326729	53326729	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:53326729C>T	uc003dgs.3	-	7	846	c.753G>A	c.(751-753)CAG>CAA	p.Q251Q	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	251					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		TGGGCTCTTTCTGGGAGGCAT	0.507													41	44					0	0	0.000374591	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54537555	54537555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:54537555G>A	uc003dhf.2	+	5	466	c.418G>A	c.(418-420)GAC>AAC	p.D140N	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.D46N|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	140	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AAATGAAAGGGACAAAGACGG	0.393													22	54					0	0	0.000586117	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604068	54604068	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:54604068G>A	uc003dhf.2	+	8	873	c.825G>A	c.(823-825)GCG>GCA	p.A275A	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.A181A|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.A9A	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	275	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TGACTATCGCGAAGCAAACAG	0.473													45	103					0	0	0.000374591	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54661843	54661843	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:54661843C>T	uc003dhf.2	+	10	1041	c.993C>T	c.(991-993)TTC>TTT	p.F331F	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.F237F|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.F65F	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	331	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ACAAACTTTTCGCCAAAGGAA	0.413													34	82					0	0	0.000953801	0	0
LRTM1	57408	broad.mit.edu	37	3	54958919	54958919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:54958919G>A	uc003dhl.2	-	2	465	c.331C>T	c.(331-333)CTT>TTT	p.L111F	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	111	LRR 3.|Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TCCAGGGAAAGGAGTGAATTC	0.473													40	77					0	0	0.000374591	0	0
ERC2	26059	broad.mit.edu	37	3	56468606	56468606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:56468606C>T	uc003dhr.1	-	2	686	c.430G>A	c.(430-432)GAC>AAC	p.D144N		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	144	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		ATTGTGCTGTCTCTTACCTGC	0.507													64	161					0	0	0.000781405	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64582627	64582627	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:64582627A>G	uc003dmg.2	-	27	4090	c.4058T>C	c.(4057-4059)GTT>GCT	p.V1353A	ADAMTS9_uc011bfo.1_Missense_Mutation_p.V1325A|ADAMTS9_uc003dmh.1_Missense_Mutation_p.V1182A|ADAMTS9_uc011bfp.1_Missense_Mutation_p.V264A	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1353	TSP type-1 9.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CTGACATACAACAACACGCCG	0.498													97	166					0	0	0.000781405	0	0
MAGI1	9223	broad.mit.edu	37	3	65479187	65479187	+	Missense_Mutation	SNP	C	T	T	rs139843075		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:65479187C>T	uc003dmn.2	-	3	1076	c.550G>A	c.(550-552)GGA>AGA	p.G184R	MAGI1_uc003dmm.2_Missense_Mutation_p.G184R|MAGI1_uc003dmo.2_Missense_Mutation_p.G184R|MAGI1_uc003dmp.2_Missense_Mutation_p.G184R|MAGI1_uc010hny.2_Missense_Mutation_p.G68R|MAGI1_uc003dmr.2_Missense_Mutation_p.G184R	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	184	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		AGTAACTCACCTTCATAGGTG	0.488													18	39					0	0	0.00074312	0	0
PPP4R2	151987	broad.mit.edu	37	3	73114751	73114751	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:73114751C>G	uc003dph.1	+	9	1202	c.1132C>G	c.(1132-1134)CGT>GGT	p.R378G	PPP4R2_uc003dpi.1_Missense_Mutation_p.R321G	NM_174907	NP_777567	Q9NY27	PP4R2_HUMAN	protein phosphatase 4, regulatory subunit 2	378	Glu-rich.				mRNA processing|protein modification process|regulation of double-strand break repair via homologous recombination|RNA splicing	centrosome|nucleus|protein phosphatase 4 complex	protein binding, bridging|protein phosphatase type 4 regulator activity			lung(1)	1		Prostate(10;0.0187)|Lung SC(41;0.236)		Epithelial(33;1.76e-07)|BRCA - Breast invasive adenocarcinoma(55;9.42e-05)|LUSC - Lung squamous cell carcinoma(21;0.00211)|Lung(16;0.00643)|KIRC - Kidney renal clear cell carcinoma(39;0.0164)|Kidney(39;0.0193)|OV - Ovarian serous cystadenocarcinoma(275;0.031)		TTCTGACTGCCGTGAAACAGA	0.413													3	89					0	0	0.00024832	0	0
FAM86D	692099	broad.mit.edu	37	3	75475709	75475709	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:75475709T>C	uc003dpp.3	-	7	888	c.529A>G	c.(529-531)ATC>GTC	p.I177V	FAM86D_uc003dpo.3_RNA|FAM86D_uc003dps.3_RNA|FAM86D_uc003dpq.3_Missense_Mutation_p.I85V|FAM86D_uc003dpr.3_RNA	NR_024241				RecName: Full=Protein FAM86B1;												0						CTCCGCAGGATCCCGACCAGC	0.562													7	367					0	0	0.00074312	0	0
FAM86D	692099	broad.mit.edu	37	3	75475719	75475719	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:75475719C>G	uc003dpp.3	-	7	878	c.519G>C	c.(517-519)TCG>TCC	p.S173S	FAM86D_uc003dpo.3_RNA|FAM86D_uc003dps.3_RNA|FAM86D_uc003dpq.3_Silent_p.S81S|FAM86D_uc003dpr.3_RNA	NR_024241				RecName: Full=Protein FAM86B1;												0						TCCCGACCAGCGACACGATGG	0.572													7	338					0	0	0.000566183	0	0
CADM2	253559	broad.mit.edu	37	3	85984961	85984961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:85984961G>A	uc003dqj.2	+	6	1344	c.718G>A	c.(718-720)GAA>AAA	p.E240K	CADM2_uc003dqk.2_Missense_Mutation_p.E249K|CADM2_uc003dql.2_Missense_Mutation_p.E242K	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	240	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TTTTCCACAAGAAGGACAGCC	0.294													11	24					0	0	0.00136819	0	0
MINA	84864	broad.mit.edu	37	3	97669650	97669650	+	Missense_Mutation	SNP	T	G	G	rs60134263	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:97669650T>G	uc003drz.1	-	6	1374	c.868A>C	c.(868-870)ATA>CTA	p.I290L	MINA_uc003dry.1_5'Flank|MINA_uc003dsa.1_Missense_Mutation_p.I290L|MINA_uc003dsb.1_Missense_Mutation_p.I290L|MINA_uc003dsc.1_Missense_Mutation_p.I290L|MINA_uc010hpa.1_RNA	NM_001042533	NP_001035998	Q8IUF8	MINA_HUMAN	MYC induced nuclear antigen isoform a	290					ribosome biogenesis	cytoplasm|nucleolus				ovary(1)	1						TGCCGGGGTATGCCGGTCCGT	0.532													20	51					0	0	0.000295444	0	0
OR5K4	403278	broad.mit.edu	37	3	98073098	98073098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:98073098C>T	uc011bgv.1	+	1	401	c.401C>T	c.(400-402)ACC>ATC	p.T134I		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CAGTACCACACCATGATGTCC	0.473													37	66					0	0	0.000692331	0	0
OR5K4	403278	broad.mit.edu	37	3	98073395	98073395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:98073395G>A	uc011bgv.1	+	1	698	c.698G>A	c.(697-699)GGA>GAA	p.G233E		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCCAAGGAGGGAAGAGGTAAA	0.353													19	31					0	0	0.00074312	0	0
OR5K1	26339	broad.mit.edu	37	3	98189178	98189178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:98189178G>A	uc003dsm.2	+	1	758	c.758G>A	c.(757-759)GGA>GAA	p.G253E		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TTATTCTATGGATCTCTTTTC	0.333													28	24					0	0	0.00106085	0	0
COL8A1	1295	broad.mit.edu	37	3	99513113	99513113	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:99513113G>T	uc003dtg.1	+	5	613	c.368G>T	c.(367-369)CGT>CTT	p.R123L	COL8A1_uc003dth.1_Missense_Mutation_p.R123L|COL8A1_uc003dti.1_Missense_Mutation_p.R124L	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	123	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						CAAGGTCCCCGTGGAGAGCCT	0.532													48	74					2.12129e-23	1.49063e-22	0.000781405	1	0
ABI3BP	25890	broad.mit.edu	37	3	100566478	100566478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:100566478G>A	uc003dun.2	-	17	1575	c.1490C>T	c.(1489-1491)TCT>TTT	p.S497F	ABI3BP_uc003duo.2_Missense_Mutation_p.S539F|ABI3BP_uc011bhd.1_5'Flank|ABI3BP_uc003dum.2_5'Flank	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	497	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						AGGGCTTTTAGAAATTTTAGG	0.383													30	61					0	0	0.000339439	0	0
MYH15	22989	broad.mit.edu	37	3	108117529	108117529	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:108117529T>G	uc003dxa.1	-	36	5205	c.5148A>C	c.(5146-5148)GAA>GAC	p.E1716D		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1716	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCAGGAGCTCTTCTTCTGACA	0.527													81	132					0	0	0.000781405	0	0
MYH15	22989	broad.mit.edu	37	3	108182072	108182072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:108182072C>T	uc003dxa.1	-	17	1867	c.1810G>A	c.(1810-1812)GGT>AGT	p.G604S		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	604	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCCAGCCAACCACTGATATTA	0.378													19	57					0	0	0.000175454	0	0
MORC1	27136	broad.mit.edu	37	3	108677820	108677820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:108677820C>T	uc003dxl.2	-	28	3034	c.2947G>A	c.(2947-2949)GAA>AAA	p.E983K	MORC1_uc011bhn.1_Missense_Mutation_p.E962K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	983					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ACTTAATTTTCCGaagtcttt	0.184													4	13					0	0	0.00024832	0	0
PLCXD2	257068	broad.mit.edu	37	3	111394159	111394159	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:111394159G>T	uc003dya.2	+	1	653	c.67G>T	c.(67-69)GGG>TGG	p.G23W	PLCXD2_uc003dyb.2_Missense_Mutation_p.G23W|PLCXD2_uc003dxz.2_Missense_Mutation_p.G23W	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	23					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						CAACCCCAGCGGGACAAAGAC	0.577													10	608					0.000442599	0.00304971	0.000442599	1	0
ZNF80	7634	broad.mit.edu	37	3	113955906	113955906	+	Missense_Mutation	SNP	C	T	T	rs150485238	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:113955906C>T	uc010hqo.2	-	1	520	c.16G>A	c.(16-18)GAT>AAT	p.D6N	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	6						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				CCCAACCCATCGCGTTTAGGG	0.483													282	478					0	0	0.000781405	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119133721	119133721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:119133721G>A	uc003ecj.3	+	12	3477	c.2945G>A	c.(2944-2946)AGG>AAG	p.R982K		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	982					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GAAACAGAGAGGAATTCTGAC	0.532													62	88					0	0	0.000781405	0	0
PLA1A	51365	broad.mit.edu	37	3	119331934	119331934	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:119331934C>T	uc003ecu.2	+	5	672	c.633C>T	c.(631-633)CTC>CTT	p.L211L	PLA1A_uc003ecv.2_Silent_p.L195L|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Silent_p.L38L	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	211					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GAGATGCCCTCTTCGTGGAAG	0.587													19	29					0	0	0.000958276	0	0
C3orf15	89876	broad.mit.edu	37	3	119466063	119466063	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:119466063G>A	uc003ede.3	+	15	2081	c.2004G>A	c.(2002-2004)GAG>GAA	p.E668E	C3orf15_uc010hqz.2_Silent_p.E606E|C3orf15_uc011bjd.1_Silent_p.E542E|C3orf15_uc011bje.1_Silent_p.E648E|C3orf15_uc003edg.3_5'Flank	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	504	Potential.					mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CAGAAATAGAGAAGATGGCTG	0.408													37	66					0	0	0.00148497	0	0
GPR156	165829	broad.mit.edu	37	3	119900021	119900021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:119900021C>T	uc011bjf.1	-	7	884	c.884G>A	c.(883-885)GGG>GAG	p.G295E	GPR156_uc011bjg.1_Missense_Mutation_p.G291E	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	295	Helical; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		AACAAAGATCCCTCCAGATGT	0.483													27	53					0	0	0.000878237	0	0
HGD	3081	broad.mit.edu	37	3	120360505	120360505	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:120360505C>T	uc003edw.2	-	11	1180	c.810G>A	c.(808-810)GGG>GGA	p.G270G	HGD_uc003edv.2_Silent_p.G129G	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	270			G -> R (in AKU).		L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GTGTATAATTCCCGTGCCAGG	0.443													23	48					0	0	0.000375601	0	0
HGD	3081	broad.mit.edu	37	3	120394643	120394644	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:120394643_120394644CC>TT	uc003edw.2	-	2	452_453	c.82_83GG>AA	c.(82-84)GGA>AAA	p.G28K		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	28					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TCATACCTGTCCTTCTGGCAGG	0.485													26	32					0	0	6.4e-05	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126317	121126317	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:121126317C>T	uc003eec.3	+	24	3027	c.2887C>T	c.(2887-2889)CTG>TTG	p.L963L	STXBP5L_uc011bji.1_Silent_p.L939L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	963	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGTCTTCTCACTGCCTTCTCA	0.418													14	10					0	0	0.000422831	0	0
ILDR1	286676	broad.mit.edu	37	3	121707240	121707240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:121707240G>A	uc003ees.2	-	8	1721	c.1615C>T	c.(1615-1617)CAT>TAT	p.H539Y	ILDR1_uc003eeq.2_Missense_Mutation_p.H507Y|ILDR1_uc003eer.2_Missense_Mutation_p.H495Y|ILDR1_uc010hrg.2_Missense_Mutation_p.H450Y	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	539	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CTTCCACTATGAGAGCTGTCT	0.443													101	145					0	0	0.000781405	0	0
CD86	942	broad.mit.edu	37	3	121828194	121828194	+	Silent	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:121828194T>A	uc003eet.2	+	5	902	c.786T>A	c.(784-786)GTT>GTA	p.V262V	CD86_uc011bjo.1_Silent_p.V180V|CD86_uc011bjp.1_Silent_p.V150V|CD86_uc003eeu.2_Silent_p.V256V	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	262	Helical; (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	GTGTGATGGTTTTCTGTCTAA	0.448													33	49					0	0	0.000409698	0	0
CD86	942	broad.mit.edu	37	3	121838341	121838341	+	Missense_Mutation	SNP	C	T	T	rs141281931		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:121838341C>T	uc003eet.2	+	7	1066	c.950C>T	c.(949-951)TCG>TTG	p.S317L	CD86_uc011bjo.1_Missense_Mutation_p.S235L|CD86_uc011bjp.1_Missense_Mutation_p.S205L|CD86_uc003eeu.2_Missense_Mutation_p.S311L	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	317	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	TTTAAAAGTTCGAAGACATCT	0.333													20	61					0	0	0.000375601	0	0
CASR	846	broad.mit.edu	37	3	121994865	121994865	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:121994865C>T	uc003eev.3	+	5	1956	c.1584C>T	c.(1582-1584)ATC>ATT	p.I528I	CASR_uc003eew.3_Silent_p.I528I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	528	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGGAGAAAATCCTGTGGAGTG	0.527													116	161					0	0	0.000781405	0	0
CASR	846	broad.mit.edu	37	3	122001056	122001056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:122001056C>T	uc003eev.3	+	6	2077	c.1705C>T	c.(1705-1707)CCT>TCT	p.P569S	CASR_uc003eew.3_Missense_Mutation_p.P579S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	569	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGTGGAGTGTCCTGATGGGGA	0.602													294	521					0	0	0.000781405	0	0
CASR	846	broad.mit.edu	37	3	122002901	122002901	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:122002901C>T	uc003eev.3	+	7	2472	c.2100C>T	c.(2098-2100)AAC>AAT	p.N700N	CASR_uc003eew.3_Silent_p.N710N	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	700	Helical; Name=3; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGAAAACCAACCGTGTCCTCC	0.602													190	354					0	0	0.000781405	0	0
CASR	846	broad.mit.edu	37	3	122003539	122003540	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:122003539_122003540CC>TT	uc003eev.3	+	7	3110_3111	c.2738_2739CC>TT	c.(2737-2739)TCC>TTT	p.S913F	CASR_uc003eew.3_Missense_Mutation_p.S923F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	913	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCCTCCTCCTCCATCAGCAGCA	0.663													92	169					0	0	6.4e-05	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632406	122632407	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:122632406_122632407CC>TT	uc003efz.1	-	16	2558_2559	c.2254_2255GG>AA	c.(2254-2256)GGC>AAC	p.G752N	SEMA5B_uc011bju.1_Missense_Mutation_p.G694N|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.G752N|SEMA5B_uc010hro.1_Missense_Mutation_p.G694N|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	752	Extracellular (Potential).|TSP type-1 2.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCAGGAGTTGCCGTTCTCGCAG	0.713													111	186					0	0	6.4e-05	0	0
ADCY5	111	broad.mit.edu	37	3	123010051	123010051	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:123010051T>C	uc003egh.1	-	18	3236	c.3236A>G	c.(3235-3237)AAC>AGC	p.N1079S	ADCY5_uc003egg.1_Missense_Mutation_p.N737S	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1079	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CTCGGAGAAGTTGGCGATGGA	0.577													135	254					0	0	0.000781405	0	0
MYLK	4638	broad.mit.edu	37	3	123451843	123451843	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:123451843G>A	uc003ego.2	-	11	1698	c.1416C>T	c.(1414-1416)CTC>CTT	p.L472L	MYLK_uc011bjw.1_Silent_p.L472L|MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Silent_p.L472L|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Silent_p.L296L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	472	Ig-like C2-type 3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCAGCAGGCAGAGGTAATGGG	0.577													40	64					0	0	0.000953801	0	0
MYLK	4638	broad.mit.edu	37	3	123452564	123452564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:123452564C>T	uc003ego.2	-	10	1561	c.1279G>A	c.(1279-1281)GAA>AAA	p.E427K	MYLK_uc011bjw.1_Missense_Mutation_p.E427K|MYLK_uc003egp.2_Missense_Mutation_p.E427K|MYLK_uc003egq.2_Missense_Mutation_p.E427K|MYLK_uc003egr.2_Missense_Mutation_p.E427K|MYLK_uc003egs.2_Missense_Mutation_p.E251K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	427	Ig-like C2-type 3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GTTTGATTTTCCTTGACCTCC	0.507													103	217					0	0	0.000781405	0	0
ZNF148	7707	broad.mit.edu	37	3	124952383	124952383	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:124952383T>A	uc003ehx.3	-	9	1673	c.1187A>T	c.(1186-1188)AAT>ATT	p.N396I	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.N396I|ZNF148_uc010hsa.2_Missense_Mutation_p.N396I|ZNF148_uc003eia.3_Missense_Mutation_p.N396I|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	396					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						TCTCTTACTATTAATTTTTTT	0.378													22	30					0	0	0.00047179	0	0
Unknown	0	broad.mit.edu	37	3	126386006	126386006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:126386006G>A	uc003eje.1	+	4	458	c.214G>A	c.(214-216)GGC>AGC	p.G72S						RecName: Full=Putative uncharacterized protein C3orf46;																		AGCTTCTGGGGGCATTCCCAG	0.527													22	57					0	0	0.000175454	0	0
MCM2	4171	broad.mit.edu	37	3	127323849	127323849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:127323849G>A	uc003ejp.2	+	4	580	c.523G>A	c.(523-525)GAG>AAG	p.E175K	MCM2_uc011bkm.1_Missense_Mutation_p.E45K|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Missense_Mutation_p.E59K	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	175	Interaction with MYST2 (By similarity).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						CGAGAACCTGGAGGATCTCAA	0.667													198	298					0	0	0.000781405	0	0
RAB43	339122	broad.mit.edu	37	3	128813977	128813977	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:128813977G>A	uc003eln.1	-	2	527	c.240C>T	c.(238-240)TTC>TTT	p.F80F	RAB43_uc003elo.1_Missense_Mutation_p.S296F|RAB43_uc010hsy.1_Silent_p.F80F	NM_198490	NP_940892	Q86YS6	RAB43_HUMAN	RAB43 protein	80					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			lung(1)	1						TGATGGTGCGGAACCGCTCCT	0.582													153	220					0	0	0.000781405	0	0
ALG1L2	644974	broad.mit.edu	37	3	129814969	129814969	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:129814969A>G	uc011bld.1	+	6	688	c.502A>G	c.(502-504)AGG>GGG	p.R168G	ALG1L2_uc010hth.2_RNA	NM_001136152	NP_001129624	C9J202	AG1L2_HUMAN	asparagine-linked glycosylation 1-like 2	168					biosynthetic process		transferase activity, transferring glycosyl groups				0						GGACATGTTCAGGTGCTGTTT	0.582													5	219					0	0	0.000274275	0	0
COL29A1	256076	broad.mit.edu	37	3	130095514	130095514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:130095514G>A	uc010htj.1	+	3	996	c.502G>A	c.(502-504)GGG>AGG	p.G168R	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	168	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						TATCTCCGTGGGGGTGCAGAA	0.502													5	8					0	0	0.000602214	0	0
CPNE4	131034	broad.mit.edu	37	3	131624227	131624227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:131624227G>A	uc003eok.2	-	2	496	c.61C>T	c.(61-63)CCC>TCC	p.P21S	CPNE4_uc011blq.1_Missense_Mutation_p.P39S|CPNE4_uc003eol.2_Missense_Mutation_p.P39S|CPNE4_uc003eom.2_Missense_Mutation_p.P21S	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	21										upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTCAGGCAGGGGCTGTTAAAG	0.463													11	14					0	0	0.000978159	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133666168	133666168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:133666168C>T	uc003eqa.3	-	9	1501	c.1227G>A	c.(1225-1227)ATG>ATA	p.M409I	SLCO2A1_uc003eqb.3_Missense_Mutation_p.M333I|SLCO2A1_uc011blv.1_Missense_Mutation_p.M228I	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	409	Helical; Name=9; (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CACAAAGGATCATGGAGATGG	0.507													79	145					0	0	0.000781405	0	0
STAG1	10274	broad.mit.edu	37	3	136192424	136192425	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:136192424_136192425CT>AC	uc003era.1	-	11	1373_1374	c.1081_1082AG>GT	c.(1081-1083)AGA>GTA	p.R361V	STAG1_uc003erb.1_Missense_Mutation_p.R361V|STAG1_uc003erc.1_Missense_Mutation_p.R135V|STAG1_uc010hua.1_Missense_Mutation_p.R224V	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	361	SCD.				cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						GAATAATTCTCTATTGGTATAT	0.347													57	113					0	0	6.4e-05	0	0
SOX14	8403	broad.mit.edu	37	3	137483785	137483785	+	Silent	SNP	G	A	A	rs145435950		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:137483785G>A	uc003erm.1	+	1	207	c.159G>A	c.(157-159)GAG>GAA	p.E53E		NM_004189	NP_004180	O95416	SOX14_HUMAN	SRY-box 14	53	HMG box.				negative regulation of transcription from RNA polymerase II promoter|nervous system development|transcription, DNA-dependent	nucleus	sequence-specific DNA binding				0						CCGAGGCAGAGAAGCGGCCAT	0.602													74	340					0	0	0.000781405	0	0
ATR	545	broad.mit.edu	37	3	142180908	142180908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:142180908G>A	uc003eux.3	-	42	7188	c.7066C>T	c.(7066-7068)CGT>TGT	p.R2356C	ATR_uc003euy.1_Missense_Mutation_p.R242C	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2356	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCTCTTCTACGAGACTCTGCA	0.294								Other_conserved_DNA_damage_response_genes					149	275					0	0	0.000781405	0	0
PLSCR2	57047	broad.mit.edu	37	3	146171856	146171856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:146171856C>T	uc003evv.1	-	6	749	c.416G>A	c.(415-417)AGA>AAA	p.R139K	PLSCR2_uc003evw.1_Missense_Mutation_p.R208K	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	139	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						TACATCCTCTCTTTTCTGATT	0.383													38	45					0	0	0.00128727	0	0
HPS3	84343	broad.mit.edu	37	3	148863268	148863268	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:148863268C>T	uc003ewu.1	+	5	1238	c.1098C>T	c.(1096-1098)GTC>GTT	p.V366V	HPS3_uc003ewt.1_Silent_p.V366V|HPS3_uc011bnq.1_Silent_p.V201V	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	366						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TGATGTCAGTCTACCAGTATC	0.438									Hermansky-Pudlak_syndrome				77	116					0	0	0.000781405	0	0
CLRN1	7401	broad.mit.edu	37	3	150645793	150645793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:150645793C>T	uc003eyk.1	-	3	920	c.629G>A	c.(628-630)GGA>GAA	p.G210E	CLRN1OS_uc011bny.1_Intron|CLRN1_uc003eyj.2_Intron	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	210					equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GAACTGAAATCCAGCAAGTCG	0.363													57	100					0	0	0.000781405	0	0
GPR87	53836	broad.mit.edu	37	3	151012994	151012994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:151012994C>T	uc003eyt.2	-	3	401	c.40G>A	c.(40-42)GAG>AAG	p.E14K	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_023915	NP_076404	Q9BY21	GPR87_HUMAN	G protein-coupled receptor 87	14	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CCGTGCAGCTCGTTATCTGTA	0.498													26	49					0	0	0.00106085	0	0
MBNL1	4154	broad.mit.edu	37	3	152163105	152163105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:152163105G>A	uc003ezm.2	+	4	1373	c.584G>A	c.(583-585)CGA>CAA	p.R195Q	MBNL1_uc003ezh.2_Missense_Mutation_p.R195Q|MBNL1_uc003ezi.2_Missense_Mutation_p.R195Q|MBNL1_uc003ezj.2_Missense_Mutation_p.R138Q|MBNL1_uc003ezl.2_Missense_Mutation_p.R195Q|MBNL1_uc003ezp.2_Missense_Mutation_p.R195Q|MBNL1_uc003ezn.2_Missense_Mutation_p.R127Q|MBNL1_uc003ezo.2_Missense_Mutation_p.R127Q|MBNL1_uc010hvp.2_Missense_Mutation_p.R103Q	NM_207293	NP_997176	Q9NR56	MBNL1_HUMAN	muscleblind-like 1 isoform c	195	C3H1-type 3.				embryonic limb morphogenesis|in utero embryonic development|myoblast differentiation|nervous system development	nucleus|stress granule	double-stranded RNA binding|protein binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AATTGCAACCGAGGAGAAAAT	0.413													34	61					0	0	0.000409698	0	0
PLCH1	23007	broad.mit.edu	37	3	155200085	155200085	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:155200085G>A	uc011bok.1	-	23	4031	c.3754C>T	c.(3754-3756)CTG>TTG	p.L1252L	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.L1214L	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1252					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GATGAGCACAGGAAGGAAGAC	0.473													160	246					0	0	0.000781405	0	0
PLCH1	23007	broad.mit.edu	37	3	155200483	155200483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:155200483C>T	uc011bok.1	-	23	3633	c.3356G>A	c.(3355-3357)GGG>GAG	p.G1119E	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.G1081E	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1119					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GATGCTTTTCCCTTCCACAAA	0.463													198	281					0	0	0.000781405	0	0
PLCH1	23007	broad.mit.edu	37	3	155200553	155200553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:155200553C>T	uc011bok.1	-	23	3563	c.3286G>A	c.(3286-3288)GTT>ATT	p.V1096I	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.V1058I	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1096					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTGGGGTTAACTACAGGATCG	0.498													245	617					0	0	0.000781405	0	0
PLCH1	23007	broad.mit.edu	37	3	155267630	155267630	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:155267630C>T	uc011bok.1	-	9	1549	c.1272G>A	c.(1270-1272)GGG>GGA	p.G424G	PLCH1_uc011boj.1_Silent_p.G424G|PLCH1_uc011bol.1_Silent_p.G406G	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	424	PI-PLC X-box.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCTTGCACTCCCCTGTATCAA	0.408													27	56					0	0	0.000720815	0	0
MFSD1	64747	broad.mit.edu	37	3	158519991	158519991	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:158519991A>T	uc003fcl.1	+	1	80	c.50A>T	c.(49-51)GAC>GTC	p.D17V	MFSD1_uc003fcm.1_RNA|MFSD1_uc003fcn.1_5'UTR|MFSD1_uc011bow.1_Missense_Mutation_p.D17V|MFSD1_uc011box.1_5'UTR	NM_022736	NP_073573	Q9H3U5	MFSD1_HUMAN	major facilitator superfamily domain containing	17					transmembrane transport	integral to membrane					0			Lung(72;0.00372)|LUSC - Lung squamous cell carcinoma(72;0.00523)			GGCGGCCCTGACGAGGCCGAC	0.692													102	159					0	0	0.000781405	0	0
SCHIP1	29970	broad.mit.edu	37	3	158970589	158970589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:158970589G>A	uc003fcq.1	+	3	253	c.148G>A	c.(148-150)GTG>ATG	p.V50M	SCHIP1_uc003fcr.1_Intron|IQCJ_uc003fco.2_Missense_Mutation_p.V50M|IQCJ_uc010hvy.1_Intron|IQCJ_uc003fcp.1_Missense_Mutation_p.V50M	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	Error:Variant_position_missing_in_Q9P0W5_after_alignment						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			GGAATCAAAGGTGAAAATGTA	0.338													4	23					0	0	0.00024832	0	0
ZBBX	79740	broad.mit.edu	37	3	167051674	167051674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:167051674C>T	uc003fep.2	-	10	951	c.628G>A	c.(628-630)GAA>AAA	p.E210K	ZBBX_uc011bpc.1_Missense_Mutation_p.E210K|ZBBX_uc003feq.2_Missense_Mutation_p.E181K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	210						intracellular	zinc ion binding			ovary(2)	2						TTACTGGTTTCCTTTGTAGAA	0.348													13	21					0	0	0.00136819	0	0
LRRC34	151827	broad.mit.edu	37	3	169521924	169521924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:169521924C>T	uc003ffx.2	-	6	550	c.535G>A	c.(535-537)GAA>AAA	p.E179K	LRRC34_uc003ffy.2_Missense_Mutation_p.E179K|LRRC34_uc011bpn.1_Missense_Mutation_p.E179K|LRRC34_uc003ffz.2_Missense_Mutation_p.E131K|LRRC34_uc003fga.3_Missense_Mutation_p.E131K	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	179											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			CCTTTATTTTCAATTTTGTTT	0.303													84	127					0	0	0.000781405	0	0
SAMD7	344658	broad.mit.edu	37	3	169639003	169639003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:169639003G>A	uc003fgd.2	+	4	355	c.88G>A	c.(88-90)GAT>AAT	p.D30N	SAMD7_uc003fge.2_Missense_Mutation_p.D30N|SAMD7_uc011bpo.1_5'UTR	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	30										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TGTTCTCAGAGATGTATTGCC	0.383													82	132					0	0	0.000781405	0	0
SAMD7	344658	broad.mit.edu	37	3	169639067	169639067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:169639067G>A	uc003fgd.2	+	4	419	c.152G>A	c.(151-153)GGA>GAA	p.G51E	SAMD7_uc003fge.2_Missense_Mutation_p.G51E|SAMD7_uc011bpo.1_5'UTR	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	51										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TCCCAATTTGGATCCTCTGTT	0.408													69	121					0	0	0.000781405	0	0
SAMD7	344658	broad.mit.edu	37	3	169656145	169656145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:169656145C>T	uc003fgd.2	+	9	1459	c.1192C>T	c.(1192-1194)CTT>TTT	p.L398F	SAMD7_uc003fge.2_Missense_Mutation_p.L398F|SAMD7_uc011bpo.1_Missense_Mutation_p.L299F	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	398										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			CAAGAAAACTCTTTCATTTCC	0.333													66	115					0	0	0.000781405	0	0
CLDN11	5010	broad.mit.edu	37	3	170150513	170150513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:170150513C>T	uc003fgx.2	+	3	795	c.593C>T	c.(592-594)TCC>TTC	p.S198F	CLDN11_uc011bpt.1_Intron|CLDN11_uc003fgy.2_Missense_Mutation_p.S114F	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	198	Cytoplasmic (Potential).			RFYYTAGSSSPTHAKSAHV -> VSTTLRALAPRLMRRVPT YKRAARLPTEVL (in Ref. 1; AAC25187).	calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GGCTCTAGCTCCCCGACTCAT	0.612													125	202					0	0	0.000781405	0	0
SLC7A14	57709	broad.mit.edu	37	3	170244711	170244711	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:170244711G>A	uc003fgz.2	-	2	331	c.15C>T	c.(13-15)TTC>TTT	p.F5F	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	5						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CCAGCGAGGTGAAGAAGCCAC	0.562													16	33					0	0	0.000566183	0	0
MCCC1	56922	broad.mit.edu	37	3	182789134	182789134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:182789134G>A	uc003fle.2	-	6	640	c.503C>T	c.(502-504)TCC>TTC	p.S168F	MCCC1_uc010hxi.2_RNA|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Missense_Mutation_p.S51F|MCCC1_uc003flg.2_Missense_Mutation_p.S59F|MCCC1_uc011bqp.1_Missense_Mutation_p.S121F|MCCC1_uc011bqq.1_Missense_Mutation_p.S59F	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	168	Biotin carboxylation.|ATP-grasp.				biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	AGCCATTATGGATTTGGATGT	0.418													151	218					0	0	0.000781405	0	0
YEATS2	55689	broad.mit.edu	37	3	183436349	183436349	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:183436349A>G	uc003fly.2	+	4	455	c.260A>G	c.(259-261)TAT>TGT	p.Y87C		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	87					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GCAAACTACTATGCTTCTGCA	0.348													3	97					0	0	6.4e-05	0	0
HTR3E	285242	broad.mit.edu	37	3	183823977	183823977	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:183823977C>T	uc010hxq.2	+	8	1453	c.987C>T	c.(985-987)ATC>ATT	p.I329I	HTR3E_uc003fml.3_Silent_p.I314I|HTR3E_uc003fmm.2_Silent_p.I344I|HTR3E_uc010hxr.2_Silent_p.I355I|HTR3E_uc003fmn.2_Silent_p.I329I	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	329	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CCATCTTCATCACCCACCTGC	0.667													138	283					0	0	0.000781405	0	0
CHRD	8646	broad.mit.edu	37	3	184100547	184100547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:184100547G>A	uc003fov.2	+	8	1213	c.967G>A	c.(967-969)GAA>AAA	p.E323K	CHRD_uc003fow.2_5'UTR|CHRD_uc003fox.2_Missense_Mutation_p.E323K|CHRD_uc003foy.2_5'UTR|CHRD_uc010hyc.2_5'UTR|CHRD_uc011brr.1_5'UTR	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	323	CHRD 2.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGGGCTGCTGGAACCCAGGAG	0.592													260	437					0	0	0.000781405	0	0
AHSG	197	broad.mit.edu	37	3	186333516	186333516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:186333516G>A	uc003fqk.3	+	2	337	c.256G>A	c.(256-258)GAA>AAA	p.E86K	AHSG_uc003fqj.2_Missense_Mutation_p.E86K|AHSG_uc003fql.3_Missense_Mutation_p.E86K|AHSG_uc003fqm.3_Missense_Mutation_p.E85K|AHSG_uc010hyp.2_Intron	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	86	Cystatin fetuin-A-type 1.				acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		AGACACCCTGGAAACCACCTG	0.557													117	166					0	0	0.000781405	0	0
HRG	3273	broad.mit.edu	37	3	186392940	186392940	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:186392940G>A	uc003fqq.2	+	6	725	c.702G>A	c.(700-702)CCG>CCA	p.P234P		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	234	Cystatin 2.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		TGGAAAGCCCGAAAAACCTTG	0.448													68	143					0	0	0.000781405	0	0
TMEM207	131920	broad.mit.edu	37	3	190158106	190158106	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:190158106C>A	uc003fsj.2	-	4	298	c.231G>T	c.(229-231)CTG>CTT	p.L77L		NM_207316	NP_997199	Q6UWW9	TM207_HUMAN	transmembrane protein 207 precursor	77						integral to membrane					0	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.0176)		GGGGTCTCCTCAGCCAGCACT	0.522													8	425					0.000157383	0.00108877	0.000157383	1	0
ATP13A5	344905	broad.mit.edu	37	3	193029730	193029730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:193029730C>T	uc011bsq.1	-	20	2320	c.2320G>A	c.(2320-2322)GAA>AAA	p.E774K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	774					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ATGTAGATTTCCTAAAATCAA	0.408													16	35					0	0	0.00074312	0	0
PPP1R2	5504	broad.mit.edu	37	3	195245818	195245818	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:195245818G>A	uc003fup.2	-	5	944	c.568C>T	c.(568-570)CAA>TAA	p.Q190*		NM_006241	NP_006232	P41236	IPP2_HUMAN	protein phosphatase 1, regulatory subunit 2	190					glycogen metabolic process|regulation of phosphoprotein phosphatase activity|regulation of signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity			urinary_tract(1)	1	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)		Epithelial(36;2.64e-22)|all cancers(36;2.69e-20)|OV - Ovarian serous cystadenocarcinoma(49;3.52e-19)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;9.55e-05)		ATCTAACCTTGATTTGATTCT	0.333													102	168					0	0	0.000781405	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400727	195400727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:195400727C>T	uc003fuw.2	+	9	1217	c.23C>T	c.(22-24)CCA>CTA	p.P8L	SDHAP2_uc011btb.1_Silent_p.P155P|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						AGATTGTGCCCAGCCTGTACG	0.587													8	281					0	0	0.000157383	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701399	195701399	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:195701399G>A	uc011btq.1	-	8	1094	c.465C>T	c.(463-465)CCC>CCT	p.P155P	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CGTACAGGCCGGGCACAATCT	0.587													93	518					0	0	0.000781405	0	0
OSTalpha	200931	broad.mit.edu	37	3	195955749	195955749	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:195955749G>A	uc003fwd.2	+	6	792	c.591G>A	c.(589-591)GTG>GTA	p.V197V	OSTalpha_uc010iac.1_Silent_p.V81V|OSTalpha_uc003fwe.2_Silent_p.V64V	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	197	Helical; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		TGACCCTGGTGGGCCTGTTTC	0.532													302	394					0	0	0.000781405	0	0
LOC220729	220729	broad.mit.edu	37	3	197348634	197348634	+	RNA	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:197348634G>C	uc011bug.1	-	4		c.457C>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						CAGCAGCACCGATGGGCCTGC	0.542													12	583					0	0	0.000978159	0	0
LMLN	89782	broad.mit.edu	37	3	197762814	197762814	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:197762814C>T	uc011buo.1	+	15	1789	c.1767C>T	c.(1765-1767)CAC>CAT	p.H589H	LMLN_uc003fyt.2_Silent_p.H574H|LMLN_uc010iar.2_Silent_p.H626H|LMLN_uc010ias.2_Silent_p.H537H|LMLN_uc003fyu.2_Silent_p.H386H	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	589					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		GCTGGATTCACGATGGAAACC	0.522													9	258					0	0	0.000274275	0	0
MFSD7	84179	broad.mit.edu	37	4	676052	676052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:676052G>A	uc003gay.2	-	10	1435	c.1378C>T	c.(1378-1380)CGT>TGT	p.R460C	MFSD7_uc003gaw.2_Missense_Mutation_p.R202C|MFSD7_uc003gax.2_Missense_Mutation_p.R459C|MFSD7_uc003gaz.2_Missense_Mutation_p.R341C|MFSD7_uc003gba.2_Missense_Mutation_p.R363C|MFSD7_uc003gbb.1_Silent_p.P381P	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	460					transmembrane transport	integral to membrane					0						ACGGCGTTACGGGTGGAGGGG	0.711													22	100					0	0	0.00148497	0	0
PCGF3	10336	broad.mit.edu	37	4	758838	758838	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:758838A>T	uc011bva.1	+	11	1142	c.667A>T	c.(667-669)AGG>TGG	p.R223W	PCGF3_uc003gbd.1_RNA|PCGF3_uc003gbe.2_Missense_Mutation_p.R223W|PCGF3_uc010ibh.2_Missense_Mutation_p.R223W|PCGF3_uc003gbg.1_Missense_Mutation_p.R189W|PCGF3_uc003gbh.2_Missense_Mutation_p.R189W	NM_006315	NP_006306	Q3KNV8	PCGF3_HUMAN	ring finger protein 3	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PcG protein complex	zinc ion binding				0						GGTTGTCACTAGGTGGAGATT	0.458													235	181					0	0	0.000781405	0	0
DGKQ	1609	broad.mit.edu	37	4	961364	961364	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:961364G>A	uc003gbw.2	-	8	1034	c.960C>T	c.(958-960)TCC>TCT	p.S320S	DGKQ_uc010ibn.2_Silent_p.S320S	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	320					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CGGCCAGGCGGGACACCGTGA	0.672													93	427					0	0	0.000781405	0	0
FAM53A	152877	broad.mit.edu	37	4	1657423	1657423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:1657423C>T	uc011bve.1	-	4	362	c.164G>A	c.(163-165)GGA>GAA	p.G55E	FAM53A_uc010ibw.2_Missense_Mutation_p.G55E	NM_001013622	NP_001013644	Q6NSI3	FA53A_HUMAN	dorsal neural-tube nuclear protein	55						nucleus					0		all_epithelial(65;0.206)|Breast(71;0.212)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)			GGGCGGTCCTCCACTGAAGAC	0.607													22	134					0	0	0.000375601	0	0
FGFR3	2261	broad.mit.edu	37	4	1808928	1808928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:1808928C>T	uc003gdr.3	+	18	2616	c.2360C>T	c.(2359-2361)TCC>TTC	p.S787F	FGFR3_uc003gdu.2_Missense_Mutation_p.S789F|FGFR3_uc003gds.3_Missense_Mutation_p.S675F|FGFR3_uc003gdq.3_Silent_p.L764L	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	787	Cytoplasmic (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	GGGGACGACTCCGTGTTTGCC	0.692		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				34	113					0	0	0.00111076	0	0
TNIP2	79155	broad.mit.edu	37	4	2747233	2747233	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:2747233G>A	uc003gfg.2	-	3	684	c.597C>T	c.(595-597)GTC>GTT	p.V199V	TNIP2_uc003gff.2_Silent_p.V92V|TNIP2_uc003gfh.2_Silent_p.V199V	NM_024309	NP_077285	Q8NFZ5	TNIP2_HUMAN	A20-binding inhibitor of NF-kappaB activation 2	199	Potential.					cytosol	protein binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TAACACTCTGGACAGAGGTGT	0.473													208	153					0	0	0.000781405	0	0
TNIP2	79155	broad.mit.edu	37	4	2749475	2749475	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:2749475C>T	uc003gfg.2	-	2	561	c.474G>A	c.(472-474)CTG>CTA	p.L158L	TNIP2_uc003gff.2_Silent_p.L51L|TNIP2_uc003gfh.2_Silent_p.L158L	NM_024309	NP_077285	Q8NFZ5	TNIP2_HUMAN	A20-binding inhibitor of NF-kappaB activation 2	158						cytosol	protein binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CGGTGGCGGTCAGCGTCCTCC	0.637													548	391					0	0	0.000781405	0	0
GRK4	2868	broad.mit.edu	37	4	2986330	2986330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:2986330C>T	uc003ggn.1	+	2	598	c.143C>T	c.(142-144)TCC>TTC	p.S48F	GRK4_uc003ggo.1_Missense_Mutation_p.S48F|GRK4_uc003ggp.1_Intron|GRK4_uc003ggq.1_Intron	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	48	N-terminal.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTTAGACATTCCATTGGTGAG	0.403													27	128					0	0	0.000720815	0	0
EVC	2121	broad.mit.edu	37	4	5785473	5785473	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:5785473C>T	uc003gil.1	+	12	1942	c.1758C>T	c.(1756-1758)CTC>CTT	p.L586L	EVC_uc003gim.1_RNA|CRMP1_uc003gin.1_Intron	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	586					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				TCCAGGAGCTCCTAGAGCAAG	0.562													14	68					0	0	0.000151284	0	0
SH3TC1	54436	broad.mit.edu	37	4	8218737	8218738	+	Missense_Mutation	DNP	CG	AT	AT	rs35719751		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:8218737_8218738CG>AT	uc003gkv.3	+	7	783_784	c.682_683CG>AT	c.(682-684)CGG>ATG	p.R228M	SH3TC1_uc003gkw.3_Missense_Mutation_p.R152M|SH3TC1_uc003gkx.3_Intron	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	228							binding			large_intestine(2)|pancreas(1)	3						GACGGGTCCCCGGGATGCAGGA	0.658													8	753					0	0	6.4e-05	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229602	8229602	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:8229602G>A	uc003gkv.3	+	12	2282	c.2181G>A	c.(2179-2181)CTG>CTA	p.L727L	SH3TC1_uc003gkw.3_Silent_p.L651L|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	727							binding			large_intestine(2)|pancreas(1)	3						ACCTGGTGCTGAGCTGTGTCA	0.667													141	634					0	0	0.000781405	0	0
DRD5	1816	broad.mit.edu	37	4	9784156	9784156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:9784156C>T	uc003gmb.3	+	1	899	c.503C>T	c.(502-504)TCC>TTC	p.S168F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	168	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TGGACCTTGTCCATCCTCATC	0.627													305	179					0	0	0.000781405	0	0
CPEB2	132864	broad.mit.edu	37	4	15067856	15067856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:15067856C>T	uc003gni.1	+	11	1709	c.1622C>T	c.(1621-1623)CCC>CTC	p.P541L	CPEB2_uc003gnj.1_Missense_Mutation_p.P511L|CPEB2_uc003gnk.1_Missense_Mutation_p.P549L|CPEB2_uc003gnl.1_Missense_Mutation_p.P522L|CPEB2_uc003gnm.1_Missense_Mutation_p.P519L|CPEB2_uc003gnn.1_Missense_Mutation_p.P514L	NM_182485	NP_872291	Q7Z5Q1	CPEB2_HUMAN	cytoplasmic polyadenylation element binding	541					regulation of translation	cytoplasm	nucleotide binding|RNA binding			skin(1)	1						AAATTTGCTCCCTTTTTTTGT	0.443													15	90					0	0	0.00074312	0	0
QDPR	5860	broad.mit.edu	37	4	17503480	17503480	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:17503480G>T	uc003gpd.2	-	4	478	c.298C>A	c.(298-300)CTC>ATC	p.L100I	QDPR_uc003gpe.2_Missense_Mutation_p.L69I|QDPR_uc003gpf.2_RNA	NM_000320	NP_000311	P09417	DHPR_HUMAN	quinoid dihydropteridine reductase	100					dihydrobiopterin metabolic process|L-phenylalanine catabolic process|tetrahydrobiopterin biosynthetic process	cytosol	6,7-dihydropteridine reductase activity|binding|electron carrier activity			ovary(1)	1					NADH(DB00157)	TTCTTAAAGAGAGCTGAGTGA	0.522													200	153					4.13848e-90	2.92525e-89	0.000781405	1	0
PPARGC1A	10891	broad.mit.edu	37	4	23816198	23816198	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:23816198T>C	uc003gqs.2	-	8	1028	c.908A>G	c.(907-909)AAA>AGA	p.K303R	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	303	Interaction with PPARG.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TTGGTTGGCTTTATGAGGAGG	0.388													8	43					0	0	0.000442599	0	0
PCDH7	5099	broad.mit.edu	37	4	30724766	30724766	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:30724766G>A	uc003gsk.1	+	1	2730	c.1722G>A	c.(1720-1722)CTG>CTA	p.L574L	PCDH7_uc011bxw.1_Silent_p.L527L|PCDH7_uc011bxx.1_Silent_p.L574L	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	574	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CCTACTCGCTGGACTCCTCTG	0.577													214	157					0	0	0.000781405	0	0
ARAP2	116984	broad.mit.edu	37	4	36230295	36230295	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:36230295T>C	uc003gsq.1	-	2	1152	c.814A>G	c.(814-816)AGC>GGC	p.S272G	ARAP2_uc003gsr.1_Missense_Mutation_p.S272G	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	272					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ACCAACTTGCTACGACTTCTC	0.428													5	120					0	0	0.000602214	0	0
ARAP2	116984	broad.mit.edu	37	4	36230836	36230836	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:36230836C>T	uc003gsq.1	-	2	611	c.273G>A	c.(271-273)AAG>AAA	p.K91K	ARAP2_uc003gsr.1_Silent_p.K91K	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	91					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CATGGTAATCCTTTGAAGGGT	0.363													69	61					0	0	0.000781405	0	0
PTTG2	10744	broad.mit.edu	37	4	37962566	37962566	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:37962566T>G	uc011bye.1	+	1	511	c.511T>G	c.(511-513)TCT>GCT	p.S171A	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	171	SH3-binding (By similarity).				chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						GAAAATGCCCTCTCCACCATG	0.488													112	252					0	0	0.000781405	0	0
LIMCH1	22998	broad.mit.edu	37	4	41682052	41682052	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:41682052G>A	uc003gvu.3	+	19	2451	c.2397G>A	c.(2395-2397)CTG>CTA	p.L799L	LIMCH1_uc003gvv.3_Silent_p.L799L|LIMCH1_uc003gvw.3_Silent_p.L798L|LIMCH1_uc003gvx.3_Silent_p.L811L|LIMCH1_uc003gwe.3_Silent_p.L722L|LIMCH1_uc003gvy.3_Silent_p.L627L|LIMCH1_uc003gwa.3_Silent_p.L639L|LIMCH1_uc003gvz.3_Silent_p.L1183L|LIMCH1_uc011byu.1_Silent_p.L632L|LIMCH1_uc003gwc.3_Silent_p.L644L|LIMCH1_uc003gwd.3_Silent_p.L632L|LIMCH1_uc011byv.1_Silent_p.L549L|LIMCH1_uc011byw.1_Silent_p.L98L	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	799	Glu-rich.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AGGACAAGCTGAAAGAAGAGT	0.448													9	12					0	0	0.000442599	0	0
TMEM33	55161	broad.mit.edu	37	4	41946931	41946931	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:41946931T>A	uc003gwi.2	+	5	883	c.518T>A	c.(517-519)TTT>TAT	p.F173Y	TMEM33_uc010ifw.2_RNA	NM_018126	NP_060596	P57088	TMM33_HUMAN	transmembrane protein 33	173	Helical; (Potential).					integral to membrane|melanosome	protein binding			ovary(1)	1						GCGACAGTTTTTATGCTTTTT	0.328													38	180					0	0	0.000319135	0	0
LRRC66	339977	broad.mit.edu	37	4	52861761	52861761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:52861761C>T	uc003gzi.2	-	4	1440	c.1427G>A	c.(1426-1428)GGA>GAA	p.G476E		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	476						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TCTGCTCCTTCCCAGAGTTCT	0.547													17	86					0	0	0.000566183	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139830	55139830	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:55139830C>T	uc003han.3	+	10	1822	c.1491C>T	c.(1489-1491)ATC>ATT	p.I497I	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Silent_p.I391I|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	497	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	AGGAGACCATCGCCGTGCGAT	0.547			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			24	131					0	0	0.000295444	0	0
KIAA1211	57482	broad.mit.edu	37	4	57189571	57189571	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:57189571C>T	uc003hbk.2	+	9	3607	c.3216C>T	c.(3214-3216)TCC>TCT	p.S1072S	KIAA1211_uc010iha.2_Silent_p.S1065S	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	1072										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					GCAGACACTCCTTAGATGGCT	0.498													64	262					0	0	0.000781405	0	0
LPHN3	23284	broad.mit.edu	37	4	62598838	62598838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:62598838C>T	uc010ihh.2	+	5	934	c.761C>T	c.(760-762)CCT>CTT	p.P254L	LPHN3_uc003hcq.3_Missense_Mutation_p.P254L|LPHN3_uc010ihg.1_Missense_Mutation_p.P322L|LPHN3_uc003hcs.1_Missense_Mutation_p.P83L	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	254	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GATACCTCCCCTTACCGATGG	0.423													6	15					0	0	0.00116845	0	0
TECRL	253017	broad.mit.edu	37	4	65274970	65274970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:65274970G>A	uc003hcv.2	-	1	209	c.100C>T	c.(100-102)CAC>TAC	p.H34Y	TECRL_uc003hcw.2_Missense_Mutation_p.H34Y	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	34					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						GACAAAAAGTGAAAATTTCTC	0.413													5	31					0	0	0.000602214	0	0
CENPC1	1060	broad.mit.edu	37	4	68385125	68385125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:68385125C>T	uc003hdd.1	-	6	610	c.427G>A	c.(427-429)GAT>AAT	p.D143N	CENPC1_uc010ihj.1_RNA|CENPC1_uc010ihk.1_RNA|CENPC1_uc010ihm.1_Missense_Mutation_p.D143N	NM_001812	NP_001803	Q03188	CENPC_HUMAN	centromere protein C 1	143					mitotic prometaphase	condensed chromosome kinetochore|condensed nuclear chromosome, centromeric region|cytosol	DNA binding			urinary_tract(1)|lung(1)	2						CTGTGATGATCATTTATGTTT	0.353													7	36					0	0	0.000274275	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68795722	68795722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:68795722C>T	uc003hdr.1	-	5	487	c.366G>A	c.(364-366)ATG>ATA	p.M122I	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.M119I	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	122	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						ACTGGAACACCATAATGACAT	0.388													195	149					0	0	0.000781405	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68939712	68939712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:68939712G>A	uc003hdt.1	-	4	347	c.298C>T	c.(298-300)CGA>TGA	p.R100*	LOC550112_uc003hdl.3_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	100	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GAAGAATGTCGAAATATCCTA	0.244													19	9					0	0	0.000375601	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69096993	69096993	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:69096993T>C	uc003hdw.3	-	7	750	c.614A>G	c.(613-615)AAA>AGA	p.K205R		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	205	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GTGACGGCCTTTCCATTGCAT	0.478													20	78					0	0	0.000958276	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69101751	69101751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:69101751C>T	uc003hdw.3	-	4	413	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	93	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TTGACATATTCCTTATATATA	0.254													22	18					0	0	0.000375601	0	0
UGT2A3	79799	broad.mit.edu	37	4	69798472	69798472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:69798472C>T	uc003hef.2	-	3	901	c.870G>A	c.(868-870)ATG>ATA	p.M290I	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	290	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CAAAATTTTCCATTTCCTGAA	0.303													10	67					0	0	0.000442599	0	0
UGT2B10	7365	broad.mit.edu	37	4	69874721	69874721	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:69874721G>A	uc011cao.1	-	8	1186	c.1050C>T	c.(1048-1050)ATC>ATT	p.I350I	UGT2B10_uc011can.1_Silent_p.I266I			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	387					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CCACCATAGGGATCCCATGGT	0.423													27	13					0	0	0.000586117	0	0
SULT1E1	6783	broad.mit.edu	37	4	70719964	70719964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:70719964G>A	uc003heo.2	-	4	453	c.340C>T	c.(340-342)CCT>TCT	p.P114S	SULT1E1_uc010ihv.1_Missense_Mutation_p.P114S	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	114					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						AATGAGGCAGGAAGAAGTTCA	0.348													35	124					0	0	0.00128727	0	0
PROL1	58503	broad.mit.edu	37	4	71275649	71275649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:71275649G>A	uc003hfi.2	+	3	778	c.604G>A	c.(604-606)GAA>AAA	p.E202K		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	202	Thr-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				AGCATCTACTGAAAATACTAC	0.483													77	345					0	0	0.000781405	0	0
AMBN	258	broad.mit.edu	37	4	71471906	71471906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:71471906G>A	uc003hfl.2	+	13	878	c.803G>A	c.(802-804)GGG>GAG	p.G268E		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	268					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			TTCCAGGGCGGGAGAGAAGAC	0.493													23	18					0	0	0.00047179	0	0
ANKRD17	26057	broad.mit.edu	37	4	73956952	73956953	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:73956952_73956953CG>AT	uc003hgp.2	-	29	6509_6510	c.6392_6393CG>AT	c.(6391-6393)CCG>CAT	p.P2131H	ANKRD17_uc003hgo.2_Missense_Mutation_p.P2018H|ANKRD17_uc003hgq.2_Missense_Mutation_p.P1880H|ANKRD17_uc003hgr.2_Missense_Mutation_p.P2130H	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2131					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTCTAACTTCCGGGGGAGGAAC	0.515													7	359					0	0	6.4e-05	0	0
AFM	173	broad.mit.edu	37	4	74357752	74357752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:74357752G>A	uc003hhb.2	+	8	1038	c.1007G>A	c.(1006-1008)AGT>AAT	p.S336N		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	336	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTTACTGACAGTGAAAATGTG	0.353													39	27					0	0	0.000509022	0	0
SDAD1	55153	broad.mit.edu	37	4	76896914	76896914	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:76896914G>A	uc003hje.3	-	6	680	c.561C>T	c.(559-561)CTC>CTT	p.L187L	SDAD1_uc003hjf.3_Silent_p.L90L|SDAD1_uc011cbr.1_Silent_p.L150L	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	187					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCCTTCTGTAGAGTTCAATCA	0.343													36	142					0	0	0.00128727	0	0
SHROOM3	57619	broad.mit.edu	37	4	77476894	77476894	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:77476894A>C	uc011cbx.1	+	2	1254	c.301A>C	c.(301-303)ACC>CCC	p.T101P		NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	101	PDZ.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			ATCCTACAAGACCCTCAGGCT	0.393													53	48					0	0	0.000781405	0	0
SHROOM3	57619	broad.mit.edu	37	4	77678072	77678072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:77678072C>T	uc011cbx.1	+	8	6133	c.5180C>T	c.(5179-5181)TCA>TTA	p.S1727L	SHROOM3_uc003hkg.2_Missense_Mutation_p.S1505L	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1727	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GTCAGCTCTTCAGGATGTGAA	0.468													134	105					0	0	0.000781405	0	0
CNOT6L	246175	broad.mit.edu	37	4	78665876	78665876	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:78665876A>G	uc011ccd.1	-	7	844	c.713T>C	c.(712-714)CTT>CCT	p.L238P	CNOT6L_uc003hks.2_Missense_Mutation_p.L238P|CNOT6L_uc003hkt.1_Missense_Mutation_p.L81P|CNOT6L_uc011cce.1_Intron	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	238					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						TGTTACCTGAAGACTAATGAT	0.383													22	20					0	0	0.000295444	0	0
FRAS1	80144	broad.mit.edu	37	4	79173606	79173606	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:79173606C>T	uc003hlb.2	+	5	810	c.370C>T	c.(370-372)CGA>TGA	p.R124*	FRAS1_uc003hkw.2_Nonsense_Mutation_p.R124*|FRAS1_uc003hky.1_5'UTR|FRAS1_uc003hkz.2_5'Flank	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	124	VWFC 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGGGGAAGTCCGATGTACCCC	0.537													17	42					0	0	0.000422831	0	0
FRAS1	80144	broad.mit.edu	37	4	79360140	79360140	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:79360140G>T	uc003hlb.2	+	40	5891	c.5451G>T	c.(5449-5451)CTG>CTT	p.L1817L	FRAS1_uc003hkw.2_Silent_p.L1817L|FRAS1_uc010ijj.1_Silent_p.L237L	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1816	CSPG 6.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACAACCATCTGGATAATCAGA	0.378													14	931					0.000566183	0.00389954	0.000566183	1	0
BMP3	651	broad.mit.edu	37	4	81952627	81952627	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:81952627C>T	uc003hmg.3	+	1	509	c.189C>T	c.(187-189)CTC>CTT	p.L63L		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	63					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						TGCTGCGGCTCTATGACAGGT	0.692													65	260					0	0	0.000781405	0	0
PRKG2	5593	broad.mit.edu	37	4	82126170	82126170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:82126170G>A	uc003hmh.2	-	1	46	c.32C>T	c.(31-33)TCT>TTT	p.S11F	PRKG2_uc011cch.1_Missense_Mutation_p.S11F	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	11					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TGGGTGCTTAGAATGTTTAGG	0.498													63	51					0	0	0.000781405	0	0
THAP9	79725	broad.mit.edu	37	4	83838849	83838849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:83838849C>T	uc003hnt.2	+	5	1603	c.1484C>T	c.(1483-1485)TCC>TTC	p.S495F	THAP9_uc003hns.1_Missense_Mutation_p.S351F|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Missense_Mutation_p.S212F	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	495							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				TATTTGTTATCCTTAGACCTG	0.348													161	126					0	0	0.000781405	0	0
HPSE	10855	broad.mit.edu	37	4	84222179	84222179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:84222179G>A	uc003hoj.3	-	11	1505	c.1406C>T	c.(1405-1407)CCT>CTT	p.P469L	HPSE_uc010ika.2_Missense_Mutation_p.P411L|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Missense_Mutation_p.P212L|HPSE_uc011cct.1_Missense_Mutation_p.P395L|HPSE_uc003hok.3_Missense_Mutation_p.P469L	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	469					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	GTTAGAAAAAGGATAGGGTAA	0.368													66	65					0	0	0.000781405	0	0
NKX6-1	4825	broad.mit.edu	37	4	85416877	85416877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:85416877G>A	uc003hpa.1	-	2	797	c.791C>T	c.(790-792)CCC>CTC	p.P264L		NM_006168	NP_006159	P78426	NKX61_HUMAN	NK6 transcription factor related, locus 1	264	Homeobox.|Repressor domain (By similarity).				detection of glucose|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|type B pancreatic cell maturation	nucleus					0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.0013)		AGCCCTCTCGGGCCCCGCCAA	0.547													150	637					0	0	0.000781405	0	0
WDFY3	23001	broad.mit.edu	37	4	85696089	85696089	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:85696089G>A	uc003hpd.2	-	29	5046	c.4638C>T	c.(4636-4638)ATC>ATT	p.I1546I		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1546						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GCAGCTTTGGGATTAACTGGA	0.378													116	71					0	0	0.000781405	0	0
BMPR1B	658	broad.mit.edu	37	4	96052390	96052390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:96052390G>A	uc003htm.3	+	10	1077	c.803G>A	c.(802-804)GGG>GAG	p.G268E	BMPR1B_uc010ilb.2_Missense_Mutation_p.G268E|BMPR1B_uc003htn.3_Missense_Mutation_p.G268E	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	268	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		GATATCAAAGGGACAGGGTCC	0.368													20	81					0	0	0.000295444	0	0
ADH4	127	broad.mit.edu	37	4	100047829	100047829	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:100047829T>A	uc003hun.2	-	8	1110	c.1034A>T	c.(1033-1035)AAA>ATA	p.K345I	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.K364I	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	345					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	CAGATTGAATTTCTTATTCTT	0.353													151	80					0	0	0.000781405	0	0
ADH1C	126	broad.mit.edu	37	4	100268905	100268905	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:100268905A>C	uc003huu.2	-	2	202	c.117T>G	c.(115-117)ATT>ATG	p.I39M		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	39					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	ATTTCACCTTAATGCGAACTT	0.328									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				41	39					0	0	0.00128727	0	0
MTTP	4547	broad.mit.edu	37	4	100527936	100527936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:100527936G>A	uc003hvc.3	+	12	1632	c.1376G>A	c.(1375-1377)GGA>GAA	p.G459E	MTTP_uc011cej.1_Missense_Mutation_p.G486E	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	459	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TTAATCCTGGGAGGACTTGAA	0.423													14	43					0	0	0.000219431	0	0
BANK1	55024	broad.mit.edu	37	4	102946496	102946496	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:102946496T>C	uc003hvy.3	+	9	1698	c.1424T>C	c.(1423-1425)GTT>GCT	p.V475A	BANK1_uc003hvx.3_Missense_Mutation_p.V460A|BANK1_uc010ill.2_Missense_Mutation_p.V342A|BANK1_uc003hvz.3_Missense_Mutation_p.V445A	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	475					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		CCACTAGAGGTTGGCAGTGAG	0.473													52	33					0	0	0.000781405	0	0
SLC39A8	64116	broad.mit.edu	37	4	103189214	103189214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:103189214G>A	uc003hwb.1	-	6	1392	c.863C>T	c.(862-864)TCA>TTA	p.S288L	SLC39A8_uc011ceo.1_Missense_Mutation_p.S288L|SLC39A8_uc003hwa.1_Missense_Mutation_p.S221L|SLC39A8_uc003hwc.2_Missense_Mutation_p.S288L	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	288	Extracellular (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		ACAGGTACATGAACTTGGCTC	0.433													40	160					0	0	0.000509022	0	0
NHEDC1	150159	broad.mit.edu	37	4	103822465	103822465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:103822465C>T	uc003hww.2	-	12	1479	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K	NHEDC1_uc003hwu.2_Intron|NHEDC1_uc010ilm.2_Intron|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Missense_Mutation_p.E226K	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	453						integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		CTTGCTGTTTCTAGAGCCAGA	0.418													12	310					0	0	0.00074312	0	0
COL25A1	84570	broad.mit.edu	37	4	109766398	109766398	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:109766398C>G	uc003hze.1	-	28	2056	c.1525G>C	c.(1525-1527)GGA>CGA	p.G509R	COL25A1_uc003hzg.2_Missense_Mutation_p.G509R|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.G267R	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	509	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CCTTTCATTCCATTGGCTCCC	0.433													3	79					0	0	6.4e-05	0	0
SEC24B	10427	broad.mit.edu	37	4	110442617	110442617	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:110442617C>T	uc003hzk.2	+	14	2398	c.2343C>T	c.(2341-2343)ACC>ACT	p.T781T	SEC24B_uc003hzl.2_Silent_p.T746T|SEC24B_uc011cfp.1_Silent_p.T811T|SEC24B_uc011cfq.1_Silent_p.T780T|SEC24B_uc011cfr.1_Silent_p.T745T	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	781					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		ACATGTTCACCAATACAAGAG	0.378													25	116					0	0	0.00127121	0	0
TRAM1L1	133022	broad.mit.edu	37	4	118006426	118006426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:118006426C>T	uc003ibv.3	-	1	311	c.124G>A	c.(124-126)GGA>AGA	p.G42R		NM_152402	NP_689615	Q8N609	TR1L1_HUMAN	translocation associated membrane protein 1-like	42	Helical; (Potential).				protein transport|transmembrane transport	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)	1						TCTGCTGTTCCCTCGAACACA	0.537													76	302					0	0	0.000781405	0	0
NDST3	9348	broad.mit.edu	37	4	119158332	119158332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:119158332C>T	uc003ibx.2	+	10	2478	c.2075C>T	c.(2074-2076)ACC>ATC	p.T692I	NDST3_uc011cgf.1_3'UTR	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	692	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						AAGATTATCACCATTCTCATT	0.453													74	90					0	0	0.000781405	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948195	119948196	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:119948195_119948196CT>TC	uc003icm.3	+	3	867_868	c.671_672CT>TC	c.(670-672)TCT>TTC	p.S224F	SYNPO2_uc010ina.2_Missense_Mutation_p.S224F|SYNPO2_uc010inb.2_Missense_Mutation_p.S224F|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.S152F	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	224						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GCTGAAAAATCTAAGTCTCCTG	0.515													53	29					0	0	6.4e-05	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951033	119951033	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:119951033A>T	uc003icm.3	+	4	1299	c.1103A>T	c.(1102-1104)CAA>CTA	p.Q368L	SYNPO2_uc010ina.2_Missense_Mutation_p.Q368L|SYNPO2_uc010inb.2_Missense_Mutation_p.Q368L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.Q296L	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	368						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCAGAAAAACAAGTGAAGGAA	0.433													144	120					0	0	0.000781405	0	0
FAT4	79633	broad.mit.edu	37	4	126373919	126373919	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:126373919G>A	uc003ifj.3	+	9	11748	c.11748G>A	c.(11746-11748)CAG>CAA	p.Q3916Q	FAT4_uc011cgp.1_Silent_p.Q2214Q|FAT4_uc003ifi.1_Silent_p.Q1394Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3916	EGF-like 3; calcium-binding (Potential).|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCATCTGCCAGAATTTTCCAG	0.443													26	13					0	0	0.000720815	0	0
FAT4	79633	broad.mit.edu	37	4	126411151	126411151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:126411151C>T	uc003ifj.3	+	17	13174	c.13174C>T	c.(13174-13176)CCC>TCC	p.P4392S	FAT4_uc011cgp.1_Missense_Mutation_p.P2633S|FAT4_uc003ifi.1_Missense_Mutation_p.P1869S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4392	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAAAACAGATCCCTCAGTGAA	0.512													121	528					0	0	0.000781405	0	0
SLC7A11	23657	broad.mit.edu	37	4	139157563	139157563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:139157563G>A	uc011chb.1	-	2	600	c.320C>T	c.(319-321)TCT>TTT	p.S107F		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	107	Cytoplasmic (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	ATGACCTCCAGATTTCTTTAT	0.373													34	141					0	0	0.00058488	0	0
ELF2	1998	broad.mit.edu	37	4	139983140	139983140	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:139983140T>C	uc003ihp.1	-	7	855	c.649A>G	c.(649-651)AAA>GAA	p.K217E	ELF2_uc003ihm.1_Missense_Mutation_p.K169E|ELF2_uc003ihn.1_Missense_Mutation_p.K157E|ELF2_uc003iho.1_Missense_Mutation_p.K140E|ELF2_uc011chc.1_Missense_Mutation_p.K32E	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	229	ETS.				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					TGAGTCCATTTAATATACCTG	0.353													27	107					0	0	0.00127121	0	0
HHIP	64399	broad.mit.edu	37	4	145573916	145573916	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:145573916G>T	uc003ijs.1	+	2	1094	c.439G>T	c.(439-441)GAA>TAA	p.E147*	HHIP_uc003ijr.1_Nonsense_Mutation_p.E147*	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	147						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CTATTGCAAAGAATTCTTTTA	0.388													104	515					3.54964e-55	2.50223e-54	0.000781405	1	0
ARHGAP10	79658	broad.mit.edu	37	4	148867830	148867830	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:148867830A>C	uc003ilf.2	+	15	1366	c.1366A>C	c.(1366-1368)ACA>CCA	p.T456P	ARHGAP10_uc003ilg.2_Missense_Mutation_p.T105P|ARHGAP10_uc003ilh.2_Missense_Mutation_p.T37P	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	456	Rho-GAP.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		GAAGACAATAACAAGTGCCTT	0.368													5	43					0	0	0.000602214	0	0
SH3D19	152503	broad.mit.edu	37	4	152053519	152053519	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:152053519C>T	uc010ipl.1	-	18	3025	c.1935G>A	c.(1933-1935)CTG>CTA	p.L645L	SH3D19_uc003imb.2_Silent_p.L400L|SH3D19_uc003imc.2_Silent_p.L586L|SH3D19_uc003ime.2_Silent_p.L622L|SH3D19_uc010ipm.2_Silent_p.L622L	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	645					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				TTTTGGTTTTCAGTGGTACCT	0.383													67	14					0	0	0.000781405	0	0
SH3D19	152503	broad.mit.edu	37	4	152054201	152054201	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:152054201C>A	uc010ipl.1	-	17	2993	c.1903G>T	c.(1903-1905)GGT>TGT	p.G635C	SH3D19_uc003imb.2_Missense_Mutation_p.G390C|SH3D19_uc003imc.2_Missense_Mutation_p.G576C|SH3D19_uc003ime.2_Missense_Mutation_p.G612C|SH3D19_uc010ipm.2_Missense_Mutation_p.G612C	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	635					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				ACATTTGCACCAGAGGTGGGA	0.358													100	17					2.98122e-55	2.10249e-54	0.000781405	1	0
FBXW7	55294	broad.mit.edu	37	4	153332598	153332598	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:153332598G>A	uc003ims.2	-	2	507	c.358C>T	c.(358-360)CAG>TAG	p.Q120*	FBXW7_uc011cii.1_Nonsense_Mutation_p.Q120*|FBXW7_uc003imt.2_Nonsense_Mutation_p.Q120*|FBXW7_uc003imu.2_Nonsense_Mutation_p.Q120*	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	120					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TCACTCTCCTGGTCCATctcc	0.388			Mis|N|D|F		colorectal|endometrial|T-ALL								17	7					0	0	0.000958276	0	0
FHDC1	85462	broad.mit.edu	37	4	153897706	153897706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:153897706G>A	uc003inf.2	+	11	3338	c.3263G>A	c.(3262-3264)CGA>CAA	p.R1088Q		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	1088					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					ACTTTGAGGCGAGCCAGCAGT	0.682													261	76					0	0	0.000781405	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632228	156632228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:156632228G>A	uc003iov.2	+	7	1447	c.911G>A	c.(910-912)GGC>GAC	p.G304D	GUCY1A3_uc003iou.2_Missense_Mutation_p.G304D|GUCY1A3_uc010iqc.2_Missense_Mutation_p.G304D|GUCY1A3_uc003iow.2_Missense_Mutation_p.G304D|GUCY1A3_uc010iqd.2_Missense_Mutation_p.G303D|GUCY1A3_uc003iox.2_Missense_Mutation_p.G304D|GUCY1A3_uc003ioz.2_Missense_Mutation_p.G69D|GUCY1A3_uc003ioy.2_Missense_Mutation_p.G304D|GUCY1A3_uc010iqe.2_Missense_Mutation_p.G69D|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.G304D	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	304					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TTTGGCAATGGCATCAGAAGG	0.418													21	9					0	0	0.000229342	0	0
TLL1	7092	broad.mit.edu	37	4	166960592	166960592	+	Silent	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:166960592T>A	uc003irh.1	+	10	1907	c.1260T>A	c.(1258-1260)CTT>CTA	p.L420L	TLL1_uc011cjn.1_Silent_p.L420L|TLL1_uc011cjo.1_Silent_p.L244L	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	420	CUB 1.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CACCTCTCCTTGGTAAGATAT	0.368													9	3					0	0	0.000274275	0	0
DDX60	55601	broad.mit.edu	37	4	169189052	169189052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:169189052G>A	uc003irp.2	-	21	3161	c.2869C>T	c.(2869-2871)CGT>TGT	p.R957C		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	957							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CCGGCCTGACGACCCACATGT	0.328													54	15					0	0	0.000781405	0	0
DDX60	55601	broad.mit.edu	37	4	169197322	169197322	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:169197322C>T	uc003irp.2	-	15	2281	c.1989G>A	c.(1987-1989)ACG>ACA	p.T663T		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	663							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTAAATCTTTCGTGGTTTTAC	0.328													59	19					0	0	0.000781405	0	0
FAT1	2195	broad.mit.edu	37	4	187525728	187525728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:187525728C>T	uc003izf.2	-	18	10539	c.10351G>A	c.(10351-10353)GAA>AAA	p.E3451K		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3451	Extracellular (Potential).|Cadherin 32.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GGCTTATTTTCCTGCACAAGA	0.378										HNSCC(5;0.00058)			47	13					0	0	0.000680045	0	0
SLC12A7	10723	broad.mit.edu	37	5	1064086	1064086	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:1064086C>T	uc003jbu.2	-	20	2678	c.2612G>A	c.(2611-2613)TGG>TAG	p.W871*		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	871	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GCACTTCCTCCACACCTGCAG	0.647													61	329					0	0	0.000781405	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5146321	5146321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:5146321G>A	uc003jdl.2	+	3	392	c.254G>A	c.(253-255)CGG>CAG	p.R85Q	ADAMTS16_uc003jdk.1_Missense_Mutation_p.R85Q|ADAMTS16_uc003jdj.1_Missense_Mutation_p.R85Q	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	85					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CATCAGCGGCGGAGAAGAGCA	0.542													45	227					0	0	0.000781405	0	0
SEMA5A	9037	broad.mit.edu	37	5	9063217	9063217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:9063217C>T	uc003jek.2	-	18	3012	c.2300G>A	c.(2299-2301)GGG>GAG	p.G767E		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	767	Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CCCAGAAAGCCCTGCCAAGGA	0.522													18	29					0	0	0.000566183	0	0
SEMA5A	9037	broad.mit.edu	37	5	9154633	9154633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:9154633G>A	uc003jek.2	-	12	2160	c.1448C>T	c.(1447-1449)CCC>CTC	p.P483L		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	483	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CCTCTTCAGGGGGATCTTGAC	0.637													23	39					0	0	0.00047179	0	0
CTNND2	1501	broad.mit.edu	37	5	10992670	10992670	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:10992670G>A	uc003jfa.1	-	19	3349	c.3204C>T	c.(3202-3204)AAC>AAT	p.N1068N	CTNND2_uc010itt.2_Silent_p.N977N|CTNND2_uc011cmy.1_Silent_p.N731N|CTNND2_uc011cmz.1_Silent_p.N635N|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.N660N	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1068					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TACCTGAGCGGTTGTTGGGAG	0.597													172	162					0	0	0.000781405	0	0
DNAH5	1767	broad.mit.edu	37	5	13753412	13753412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:13753412G>A	uc003jfd.2	-	63	10844	c.10802C>T	c.(10801-10803)CCT>CTT	p.P3601L	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3601	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AATTAACAAAGGGTAACGAGA	0.373									Kartagener_syndrome				11	29					0	0	0.000978159	0	0
DNAH5	1767	broad.mit.edu	37	5	13769624	13769624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:13769624C>T	uc003jfd.2	-	57	9748	c.9706G>A	c.(9706-9708)GAT>AAT	p.D3236N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3236	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGCTTTATCGTTGGCCACT	0.418									Kartagener_syndrome				37	27					0	0	0.000814825	0	0
DNAH5	1767	broad.mit.edu	37	5	13883105	13883105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:13883105C>T	uc003jfd.2	-	20	3124	c.3082G>A	c.(3082-3084)GAA>AAA	p.E1028K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1028	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTACATCTTCCAGGGCAGGG	0.532									Kartagener_syndrome				27	77					0	0	0.000878237	0	0
PRDM9	56979	broad.mit.edu	37	5	23527858	23527858	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:23527858C>T	uc003jgo.2	+	11	2843	c.2661C>T	c.(2659-2661)CCC>CCT	p.P887P		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	887					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGGAGAAGCCCTACGTCTGCA	0.522										HNSCC(3;0.000094)			16	9					0	0	0.000422831	0	0
CDH6	1004	broad.mit.edu	37	5	31294268	31294268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:31294268C>T	uc003jhe.1	+	3	754	c.428C>T	c.(427-429)TCT>TTT	p.S143F	CDH6_uc003jhd.1_Missense_Mutation_p.S143F	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	143	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						GAGCCCGAGTCTGAATTCATC	0.478													34	31					0	0	0.000692331	0	0
CDH6	1004	broad.mit.edu	37	5	31305303	31305303	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:31305303A>T	uc003jhe.1	+	7	1348	c.1022A>T	c.(1021-1023)AAA>ATA	p.K341I	CDH6_uc003jhd.1_Missense_Mutation_p.K341I	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	341	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						GAAAAGAAGAAAGTGTATACC	0.438													5	54					0	0	8.12818e-05	0	0
RNASEN	29102	broad.mit.edu	37	5	31526642	31526643	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:31526642_31526643GG>AA	uc003jhg.2	-	4	756_757	c.397_398CC>TT	c.(397-399)CCT>TTT	p.P133F	RNASEN_uc003jhh.2_Missense_Mutation_p.P133F|RNASEN_uc003jhi.2_Missense_Mutation_p.P133F|RNASEN_uc010iui.1_Missense_Mutation_p.P124F	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	133	Pro-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						AGGTGCCCCAGGGACTGGGGGG	0.599													17	101					0	0	6.4e-05	0	0
PDZD2	23037	broad.mit.edu	37	5	32074523	32074523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:32074523C>T	uc003jhl.2	+	18	3699	c.3311C>T	c.(3310-3312)CCC>CTC	p.P1104L	PDZD2_uc003jhm.2_Missense_Mutation_p.P1104L|PDZD2_uc011cnx.1_Missense_Mutation_p.P930L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1104					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						ACTGGGAGCCCCAGTTCCCCC	0.592													42	203					0	0	0.000319135	0	0
AMACR	23600	broad.mit.edu	37	5	33989322	33989322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:33989322C>T	uc003jig.2	-	5	1107	c.1025G>A	c.(1024-1026)AGG>AAG	p.R342K	AMACR_uc003jih.2_3'UTR|AMACR_uc003jii.2_Missense_Mutation_p.R327K|AMACR_uc003jij.2_Missense_Mutation_p.R342K	NM_014324	NP_055139	Q9UHK6	AMACR_HUMAN	alpha-methylacyl-CoA racemase isoform 1	342				FKR -> SKG (in Ref. 1; CAB44062).	bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	mitochondrion|peroxisomal matrix	alpha-methylacyl-CoA racemase activity				0						GAAAGGATCCCTTTTGAAAGA	0.473													52	255					0	0	0.000781405	0	0
PRLR	5618	broad.mit.edu	37	5	35065776	35065776	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:35065776G>A	uc003jjm.2	-	10	1814	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Silent_p.S327S	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	428	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGTGGTAAGAGGATCTGGGGT	0.493													58	97					0	0	0.000781405	0	0
IL7R	3575	broad.mit.edu	37	5	35876323	35876323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:35876323G>A	uc003jjs.2	+	8	1204	c.1115G>A	c.(1114-1116)GGG>GAG	p.G372E	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	372	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TGCCTGGCTGGGAATGTCAGT	0.552													7	51					0	0	0.000157383	0	0
EGFLAM	133584	broad.mit.edu	37	5	38418331	38418331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:38418331G>A	uc003jlc.1	+	12	1982	c.1658G>A	c.(1657-1659)GGA>GAA	p.G553E	EGFLAM_uc003jlb.1_Missense_Mutation_p.G553E|EGFLAM_uc003jle.1_Missense_Mutation_p.G319E|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	553	Laminin G-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGGCCCCTGGGAAAAGCACTC	0.557													18	12					0	0	0.000295444	0	0
LIFR	3977	broad.mit.edu	37	5	38482297	38482297	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:38482297C>T	uc010ive.1	-	20	3026	c.2694G>A	c.(2692-2694)TTG>TTA	p.L898L	LIFR_uc003jli.2_Silent_p.L898L	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	898	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					GATTCATTTCCAATGTTTTAA	0.363			T	PLAG1	salivary adenoma								34	45					0	0	0.000409698	0	0
OSMR	9180	broad.mit.edu	37	5	38924674	38924674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:38924674G>A	uc003jln.1	+	14	2388	c.2021G>A	c.(2020-2022)CGA>CAA	p.R674Q	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	674	Fibronectin type-III 4.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TGCCACCCACGATTTGAAAAG	0.358													52	50					0	0	0.000781405	0	0
FYB	2533	broad.mit.edu	37	5	39153647	39153647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:39153647G>A	uc003jls.2	-	2	1262	c.1195C>T	c.(1195-1197)CAT>TAT	p.H399Y	FYB_uc003jlt.2_Missense_Mutation_p.H399Y|FYB_uc003jlu.2_Missense_Mutation_p.H399Y|FYB_uc011cpl.1_Missense_Mutation_p.H409Y	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	399	Interaction with SKAP1.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CTGGCCGGATGGGATGGTGGA	0.488													69	194					0	0	0.000781405	0	0
C6	729	broad.mit.edu	37	5	41158868	41158868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:41158868C>T	uc003jmk.2	-	13	2086	c.1876G>A	c.(1876-1878)GAT>AAT	p.D626N	C6_uc003jml.1_Missense_Mutation_p.D626N	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	626					complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TCTTCGTCATCATTGATACAT	0.294													3	1					0	0	6.4e-05	0	0
OXCT1	5019	broad.mit.edu	37	5	41840595	41840595	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:41840595G>T	uc003jmn.2	-	7	1021	c.690C>A	c.(688-690)TTC>TTA	p.F230L		NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	230					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	TTGGCAAGTTGAAATTCCTTG	0.368													26	25					4.43304e-23	3.1123e-22	0.00106085	1	0
GHR	2690	broad.mit.edu	37	5	42719241	42719241	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:42719241C>T	uc003jmt.2	+	10	1675	c.1632C>T	c.(1630-1632)ATC>ATT	p.I544I	GHR_uc011cpq.1_Silent_p.I357I	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	544	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAAAGTGCATCCCTGTGGCTC	0.478													4	28					0	0	0.00024832	0	0
NNT	23530	broad.mit.edu	37	5	43619149	43619149	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:43619149C>T	uc003joe.2	+	5	870	c.615C>T	c.(613-615)GTC>GTT	p.V205V	NNT_uc003jof.2_Silent_p.V205V	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	205	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	AGGCTGTTGTCCTAGCAGCAA	0.313													23	102					0	0	0.000295444	0	0
HCN1	348980	broad.mit.edu	37	5	45645578	45645578	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:45645578G>A	uc003jok.2	-	2	583	c.558C>T	c.(556-558)TTC>TTT	p.F186F		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	186	Helical; Name=Segment S2; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GGTCCAATAGGAAAACTGTAT	0.368													43	43					0	0	0.000509022	0	0
GZMA	3001	broad.mit.edu	37	5	54403645	54403645	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:54403645T>C	uc003jpm.2	+	3	276	c.239T>C	c.(238-240)CTT>CCT	p.L80P		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	80	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				CAGGTCATTCTTGGGGCTCAC	0.413													11	23					0	0	0.00136819	0	0
DHX29	54505	broad.mit.edu	37	5	54552319	54552319	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:54552319G>A	uc003jpx.2	-	27	4227	c.4107C>T	c.(4105-4107)AAC>AAT	p.N1369N	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	1369							ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				TTCAGTTTCAGTTATTCTCTG	0.303													16	22					0	0	0.000958276	0	0
SLC38A9	153129	broad.mit.edu	37	5	54923779	54923779	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:54923779A>T	uc003jqf.2	-	15	1661	c.1460T>A	c.(1459-1461)ATT>AAT	p.I487N	SLC38A9_uc003jqd.2_Missense_Mutation_p.I424N|SLC38A9_uc010ivx.2_Missense_Mutation_p.I424N|SLC38A9_uc003jqe.2_RNA|SLC38A9_uc010ivy.2_Missense_Mutation_p.I358N	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	487	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				TCCCACAATAATTAGATTAAG	0.368													61	60					0	0	0.000781405	0	0
ELOVL7	79993	broad.mit.edu	37	5	60067745	60067745	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:60067745C>G	uc003jsi.3	-	4	440	c.240G>C	c.(238-240)GTG>GTC	p.V80V	ELOVL7_uc011cqo.1_Intron|ELOVL7_uc010iwk.2_Silent_p.V80V|ELOVL7_uc003jsj.3_Silent_p.V67V	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	80	Helical; (Potential).			V -> E (in Ref. 3; BAB15697).	fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				AACACATATACACAGAAAAGA	0.358													3	23					0	0	6.4e-05	0	0
CARTPT	9607	broad.mit.edu	37	5	71015757	71015757	+	Silent	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:71015757C>G	uc003kbv.1	+	2	337	c.210C>G	c.(208-210)CCC>CCG	p.P70P		NM_004291	NP_004282	Q16568	CART_HUMAN	cocaine- and amphetamine-regulated transcript	70					activation of MAPKK activity|adult feeding behavior|cellular glucose homeostasis|cellular response to starvation|circadian regulation of gene expression|negative regulation of appetite|negative regulation of bone resorption|negative regulation of osteoclast differentiation|neuropeptide signaling pathway|positive regulation of blood pressure|positive regulation of epinephrine secretion|positive regulation of transmission of nerve impulse|synaptic transmission	extracellular space				ovary(1)	1		Lung NSC(167;0.00153)|Ovarian(174;0.0175)|Prostate(74;0.11)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;8.4e-56)	Amphetamine(DB00182)	AACGTGTTCCCATCTATGAGA	0.517													5	633					0	0	0.000602214	0	0
ENC1	8507	broad.mit.edu	37	5	73931914	73931914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:73931914G>A	uc003kdc.3	-	2	1528	c.397C>T	c.(397-399)CGG>TGG	p.R133W	ENC1_uc011css.1_Missense_Mutation_p.R60W	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	133					nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		CATGCATCCCGGATGTCTTGA	0.532													85	430					0	0	0.000781405	0	0
SCAMP1	9522	broad.mit.edu	37	5	77712443	77712443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:77712443G>A	uc003kfl.2	+	4	470	c.313G>A	c.(313-315)GAA>AAA	p.E105K	SCAMP1_uc010jaa.2_RNA|SCAMP1_uc011ctc.1_RNA|SCAMP1_uc011ctd.1_Intron	NM_004866	NP_004857	O15126	SCAM1_HUMAN	secretory carrier membrane protein 1	105	Cytoplasmic (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|recycling endosome membrane|trans-Golgi network	protein binding				0		all_lung(232;0.000397)|Lung NSC(167;0.00105)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.9e-46)|Epithelial(54;9.4e-43)|all cancers(79;1.12e-37)		AGATCGTCGGGAACGAGAAAT	0.343													3	6					0	0	6.4e-05	0	0
ARSB	411	broad.mit.edu	37	5	78076340	78076340	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:78076340G>A	uc003kfq.2	-	8	2768	c.1482C>T	c.(1480-1482)ATC>ATT	p.I494I		NM_000046	NP_000037	P15848	ARSB_HUMAN	arylsulfatase B isoform 1 precursor	494					lysosomal transport|lysosome organization	lysosome	arylsulfatase activity|metal ion binding|N-acetylgalactosamine-4-sulfatase activity			upper_aerodigestive_tract(1)	1		all_lung(232;0.000637)|Lung NSC(167;0.00173)|Ovarian(174;0.0105)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;4.24e-44)|Epithelial(54;3.12e-39)|all cancers(79;3.02e-34)		GCTTTGTGACGATGTGAGGAT	0.537													23	95					0	0	0.000295444	0	0
VCAN	1462	broad.mit.edu	37	5	82833200	82833200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:82833200G>A	uc003kii.3	+	8	4734	c.4378G>A	c.(4378-4380)GAA>AAA	p.E1460K	VCAN_uc003kij.3_Missense_Mutation_p.E473K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E124K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1460	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AGCCAAAACGGAATTGTCTAC	0.423													11	20					0	0	0.000978159	0	0
GPR98	84059	broad.mit.edu	37	5	90136565	90136565	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:90136565C>T	uc003kju.2	+	78	16878	c.16782C>T	c.(16780-16782)CGC>CGT	p.R5594R	GPR98_uc003kjt.2_Silent_p.R3300R|GPR98_uc003kjw.2_Silent_p.R1255R	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5594	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCCTAAACGCTTCCAGATTG	0.448													124	513					0	0	0.000781405	0	0
GPR98	84059	broad.mit.edu	37	5	90144634	90144634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:90144634G>A	uc003kju.2	+	79	17296	c.17200G>A	c.(17200-17202)GAA>AAA	p.E5734K	GPR98_uc003kjt.2_Missense_Mutation_p.E3440K|GPR98_uc003kjw.2_Missense_Mutation_p.E1395K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5734	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTCTCCTGGTGAAAAGTAAGT	0.363													183	187					0	0	0.000781405	0	0
PCSK1	5122	broad.mit.edu	37	5	95735809	95735809	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:95735809C>T	uc003kls.1	-	10	1484	c.1278G>A	c.(1276-1278)TGG>TGA	p.W426*	PCSK1_uc010jbi.1_Nonsense_Mutation_p.W116*	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	426					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CATTCTTTTTCCATCCAGGGT	0.522													56	69					0	0	0.000781405	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834498	101834498	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:101834498C>T	uc003knn.2	-	1	223	c.51G>A	c.(49-51)AGG>AGA	p.R17R	SLCO6A1_uc003kno.2_Silent_p.R17R|SLCO6A1_uc003knp.2_Silent_p.R17R|SLCO6A1_uc003knq.2_Silent_p.R17R	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	17	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GCTCTACTCCCCTTGAGACTT	0.677													155	747					0	0	0.000781405	0	0
C5orf13	9315	broad.mit.edu	37	5	111066742	111066742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:111066742C>T	uc003kpl.2	-	3	562	c.83G>A	c.(82-84)GGA>GAA	p.G28E	C5orf13_uc011cvr.1_Missense_Mutation_p.G72E|C5orf13_uc011cvs.1_Missense_Mutation_p.G62E|C5orf13_uc003kpk.2_Intron|C5orf13_uc003kpm.2_Missense_Mutation_p.G28E|C5orf13_uc011cvk.1_Missense_Mutation_p.G28E|C5orf13_uc011cvl.1_Missense_Mutation_p.G28E|C5orf13_uc011cvm.1_Missense_Mutation_p.G28E|C5orf13_uc011cvn.1_Missense_Mutation_p.G28E|C5orf13_uc011cvo.1_Missense_Mutation_p.G28E|C5orf13_uc011cvp.1_Missense_Mutation_p.G28E|C5orf13_uc011cvq.1_Missense_Mutation_p.G28E	NM_001142483	NP_001135955	Q16612	NP311_HUMAN	neuronal protein 3.1 isoform a	28						cytoplasm				skin(1)	1		all_cancers(142;0.00597)|all_epithelial(76;0.000144)|Prostate(80;0.0115)|Colorectal(10;0.0446)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;5.45e-09)|Epithelial(69;2e-08)|all cancers(49;1.9e-06)|COAD - Colon adenocarcinoma(37;0.0514)|Colorectal(14;0.0629)		AGGAAGTCTTCCCTGCAAAGC	0.478													7	12					0	0	0.000157383	0	0
SEMA6A	57556	broad.mit.edu	37	5	115783481	115783481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:115783481C>T	uc010jck.2	-	19	2630	c.1921G>A	c.(1921-1923)GGC>AGC	p.G641S	SEMA6A_uc003krx.3_Missense_Mutation_p.G658S|SEMA6A_uc011cwe.1_Missense_Mutation_p.G20S|SEMA6A_uc003krv.3_Missense_Mutation_p.G68S|SEMA6A_uc003krw.3_Missense_Mutation_p.G118S|SEMA6A_uc010jcj.2_Missense_Mutation_p.G185S	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	641	Extracellular (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		TGGTCGTGGCCTTTGAGGTAA	0.537													27	105					0	0	0.000720815	0	0
SRFBP1	153443	broad.mit.edu	37	5	121356448	121356448	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:121356448T>A	uc003kst.1	+	6	1090	c.1018T>A	c.(1018-1020)TTA>ATA	p.L340I		NM_152546	NP_689759	Q8NEF9	SRFB1_HUMAN	serum response factor binding protein 1	340					regulation of transcription, DNA-dependent|transcription, DNA-dependent	perinuclear region of cytoplasm					0		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000227)|Epithelial(69;0.000365)|all cancers(49;0.00517)		AACCAGAAAGTTAGAATCAGT	0.313													4	11					0	0	0.00024832	0	0
MEGF10	84466	broad.mit.edu	37	5	126784839	126784839	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:126784839A>C	uc003kuh.3	+	23	3267	c.2905A>C	c.(2905-2907)AAG>CAG	p.K969Q	MEGF10_uc003kui.3_Missense_Mutation_p.K969Q	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	969	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		GAACCCTGGGAAGAGAGGCCC	0.463													21	96					0	0	0.00047179	0	0
ACSL6	23305	broad.mit.edu	37	5	131303687	131303687	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:131303687G>A	uc010jdo.1	-	16	1550	c.1467C>T	c.(1465-1467)ATC>ATT	p.I489I	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Silent_p.I514I|ACSL6_uc003kvy.1_Silent_p.I514I|ACSL6_uc003kwb.2_Silent_p.I479I|ACSL6_uc003kvz.1_Silent_p.I414I|ACSL6_uc003kwa.1_Silent_p.I500I|ACSL6_uc003kvw.1_Silent_p.I135I|ACSL6_uc010jdn.1_Silent_p.I504I	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	489	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAACGAGCTTGATATGATTGC	0.438													79	63					0	0	0.000781405	0	0
SLC22A4	6583	broad.mit.edu	37	5	131671556	131671556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:131671556G>A	uc003kwq.2	+	8	1472	c.1307G>A	c.(1306-1308)GGG>GAG	p.G436E	uc003kwr.3_Intron	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	436	Helical; Name=10; (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	GGAAAATTTGGGATCACCTCT	0.468													124	177					0	0	0.000781405	0	0
C5orf20	140947	broad.mit.edu	37	5	134782188	134782188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:134782188G>A	uc003lav.2	-	1	851	c.611C>T	c.(610-612)TCT>TTT	p.S204F		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	204	Ser-rich.					nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CAAGTGCGAAGACCAGGCCCT	0.527													113	50					0	0	0.000781405	0	0
KDM3B	51780	broad.mit.edu	37	5	137733895	137733895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:137733895C>T	uc003lcy.1	+	10	3060	c.2860C>T	c.(2860-2862)CGT>TGT	p.R954C	KDM3B_uc010jew.1_Missense_Mutation_p.R610C|KDM3B_uc011cys.1_5'UTR	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	954					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AGGGGTACTCCGTGTGGAGGG	0.498													80	41					0	0	0.000781405	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:139781730G>A	uc003lfs.1	+	1	302	c.178G>A	c.(178-180)GGC>AGC	p.G60S	ANKHD1_uc003lfq.1_Missense_Mutation_p.G60S|ANKHD1_uc003lfr.2_Missense_Mutation_p.G60S|uc003lfn.2_5'Flank|ANKHD1_uc003lfp.2_Missense_Mutation_p.G60S|ANKHD1_uc003lfo.2_Missense_Mutation_p.G60S|ANKHD1_uc010jfk.2_Missense_Mutation_p.G60S	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	60						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			cggcagcagcggcggcggcgg	0.612													6	121					0	0	0.00116845	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203293	140203293	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:140203293C>A	uc003lhl.2	+	1	1933	c.1933C>A	c.(1933-1935)CGC>AGC	p.R645S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.R645S|PCDHA5_uc003lhj.1_Missense_Mutation_p.R645S	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	645	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGCGCCACCGCCTTCTGGT	0.667													8	423					0.000673444	0.0046179	0.000673444	1	0
PCDHB3	56132	broad.mit.edu	37	5	140481048	140481048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:140481048G>A	uc003lio.2	+	1	815	c.815G>A	c.(814-816)GGA>GAA	p.G272E	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	272	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAGATACAGGAAGTTTTGGG	0.408													406	208					0	0	0.000781405	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568538	140568538	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:140568538A>G	uc003liw.1	+	3	1647	c.1647A>G	c.(1645-1647)GTA>GTG	p.V549V		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	549	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTGCGCGTACTGGTGCTGG	0.711													4	606					0	0	0.000978159	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764321	140764321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:140764321G>A	uc003lka.1	+	1	1855	c.1855G>A	c.(1855-1857)GTT>ATT	p.V619I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.V619I	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	619	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCTTTGCGGTTGGGCTGTA	0.642													243	109					0	0	0.000781405	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140802553	140802553	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:140802553T>A	uc003lkq.1	+	1	2017	c.1759T>A	c.(1759-1761)TAC>AAC	p.Y587N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.Y587N|PCDHGA11_uc003lkp.1_Missense_Mutation_p.Y587N	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	587	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAACCTGGCTACCTGGTGAC	0.647													448	244					0	0	0.000781405	0	0
HDAC3	8841	broad.mit.edu	37	5	141008152	141008152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:141008152G>A	uc003llf.2	-	8	731	c.665C>T	c.(664-666)CCC>CTC	p.P222L	HDAC3_uc003lle.1_Missense_Mutation_p.P165L	NM_003883	NP_003874	O15379	HDAC3_HUMAN	histone deacetylase 3	222	Histone deacetylase.				anti-apoptosis|cellular lipid metabolic process|negative regulation of cell cycle|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|spindle assembly|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|spindle microtubule|transcriptional repressor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription corepressor activity|transcription factor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Vorinostat(DB02546)	ATCCCGCAGGGGCACGTTCAG	0.537													209	103					0	0	0.000781405	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147019254	147019254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:147019254C>T	uc003loq.1	-	10	1853	c.1471G>A	c.(1471-1473)GCA>ACA	p.A491T	JAKMIP2_uc011dbx.1_Missense_Mutation_p.A449T|JAKMIP2_uc003lor.1_Missense_Mutation_p.A491T|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.A491T	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	491	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGGCATATGCTCTTTGGAGG	0.448													219	161					0	0	0.000781405	0	0
PDE6A	5145	broad.mit.edu	37	5	149264377	149264377	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:149264377T>A	uc003lrg.3	-	15	2012	c.1892A>T	c.(1891-1893)CAC>CTC	p.H631L		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	631					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AAACTCCAAGTGGTGTCTTTC	0.507													75	32					0	0	0.000781405	0	0
SYNPO	11346	broad.mit.edu	37	5	150029654	150029654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:150029654C>T	uc003lsn.2	+	3	2923	c.2549C>T	c.(2548-2550)GCT>GTT	p.A850V	SYNPO_uc003lso.3_Missense_Mutation_p.A606V|SYNPO_uc003lsp.2_Missense_Mutation_p.A606V	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	850	Pro-rich.				positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCAAGGGGGCTCTCCCTCCA	0.687													370	190					0	0	0.000781405	0	0
SLC36A3	285641	broad.mit.edu	37	5	150672984	150672984	+	Silent	SNP	C	T	T	rs148484556	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:150672984C>T	uc003ltw.2	-	4	764	c.345G>A	c.(343-345)ACG>ACA	p.T115T	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Silent_p.T59T|SLC36A3_uc003ltx.2_Silent_p.T115T	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	115	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCCGTACATCGTGGCCTCTC	0.438													19	17					0	0	0.00047179	0	0
SLC36A2	153201	broad.mit.edu	37	5	150696555	150696555	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:150696555G>A	uc003lty.2	-	10	1405	c.1275C>T	c.(1273-1275)CTC>CTT	p.L425L	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Silent_p.L227L	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	425	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGACCTCCAGGAGCGGTGGGA	0.647													51	30					0	0	0.000781405	0	0
FAT2	2196	broad.mit.edu	37	5	150929002	150929003	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:150929002_150929003CC>TT	uc003lue.3	-	8	4655_4656	c.4642_4643GG>AA	c.(4642-4644)GGA>AAA	p.G1548K	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1548	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGGAGGTTTCCATCCTCCACA	0.55													39	22					0	0	6.4e-05	0	0
GRIA1	2890	broad.mit.edu	37	5	153054110	153054110	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:153054110G>A	uc003lva.3	+	6	1115	c.750G>A	c.(748-750)GTG>GTA	p.V250V	GRIA1_uc003luy.3_Silent_p.V250V|GRIA1_uc003luz.3_Silent_p.V155V|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.V170V|GRIA1_uc011dcx.1_Silent_p.V181V|GRIA1_uc011dcy.1_Silent_p.V260V|GRIA1_uc011dcz.1_Silent_p.V260V|GRIA1_uc010jia.1_Silent_p.V230V	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	250	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCGCCAATGTGACAGGTTTCC	0.502													55	32					0	0	0.000781405	0	0
CYFIP2	26999	broad.mit.edu	37	5	156723780	156723780	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:156723780C>T	uc003lwq.2	+	7	523	c.385C>T	c.(385-387)CAG>TAG	p.Q129*	CYFIP2_uc011ddn.1_Nonsense_Mutation_p.Q103*|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Nonsense_Mutation_p.Q129*|CYFIP2_uc003lws.2_Nonsense_Mutation_p.Q129*|CYFIP2_uc003lwt.2_Nonsense_Mutation_p.Q7*|CYFIP2_uc011ddp.1_5'UTR|CYFIP2_uc003lwp.2_Nonsense_Mutation_p.Q7*	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	129					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CATGTATTTTCAGGTGAGTGG	0.488													141	91					0	0	0.000781405	0	0
SLIT3	6586	broad.mit.edu	37	5	168098256	168098256	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:168098256G>A	uc003mab.2	-	34	4494	c.4074C>T	c.(4072-4074)GGC>GGT	p.G1358G	SLIT3_uc010jjg.2_Silent_p.G1365G	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1358	EGF-like 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGCCGGTCCAGCCTGGGCGGC	0.692													152	76					0	0	0.000781405	0	0
LCP2	3937	broad.mit.edu	37	5	169720331	169720331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:169720331C>T	uc003man.1	-	2	331	c.124G>A	c.(124-126)GAT>AAT	p.D42N	LCP2_uc011det.1_5'UTR	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	42	SAM.				immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		CGAGCCCCATCGATGTGGTAC	0.517													10	6					0	0	0.000978159	0	0
DBN1	1627	broad.mit.edu	37	5	176885602	176885602	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:176885602G>A	uc003mgy.2	-	12	1405	c.1233C>T	c.(1231-1233)CCC>CCT	p.P411P	DBN1_uc011dga.1_Silent_p.P143P|DBN1_uc003mgx.2_Silent_p.P413P|DBN1_uc010jkn.1_Silent_p.P361P|DBN1_uc003mgz.1_Silent_p.P394P	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	411					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGGCCCCCGGGGAGGCGCCT	0.692													141	70					0	0	0.000781405	0	0
HNRNPAB	3182	broad.mit.edu	37	5	177636398	177636398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:177636398G>A	uc003miu.2	+	6	994	c.737G>A	c.(736-738)GGA>GAA	p.G246E	HNRNPAB_uc003miv.2_Missense_Mutation_p.G246E|HNRNPAB_uc010jks.2_Missense_Mutation_p.G246E|HNRNPAB_uc003miw.2_Missense_Mutation_p.G246E|HNRNPAB_uc003mix.2_Missense_Mutation_p.G246E|AGXT2L2_uc003miy.2_Intron|AGXT2L2_uc003mjc.2_Intron|AGXT2L2_uc003miz.2_Intron|AGXT2L2_uc003mja.2_Intron|AGXT2L2_uc003mjb.2_Intron	NM_031266	NP_112556	Q99729	ROAA_HUMAN	heterogeneous nuclear ribonucleoprotein A/B	246	Gly-rich.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0						GGGGGCCGTGGAAACCGCAAC	0.572													205	115					0	0	0.000781405	0	0
ZFP2	80108	broad.mit.edu	37	5	178358943	178358943	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:178358943G>C	uc003mjn.1	+	5	1138	c.629G>C	c.(628-630)GGA>GCA	p.G210A	ZFP2_uc010jky.2_Missense_Mutation_p.G210A|ZFP2_uc010jkx.1_Missense_Mutation_p.G210A	NM_030613	NP_085116	Q6ZN57	ZFP2_HUMAN	zinc finger protein 2 homolog	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.00655)|GBM - Glioblastoma multiforme(465;0.0302)|OV - Ovarian serous cystadenocarcinoma(192;0.0615)|Epithelial(171;0.111)		ATTCATACTGGAGAGAAACCC	0.393													3	121					0	0	0.00024832	0	0
ZNF454	285676	broad.mit.edu	37	5	178391739	178391739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:178391739G>A	uc003mjo.1	+	5	605	c.334G>A	c.(334-336)GAA>AAA	p.E112K	ZNF454_uc010jkz.1_Missense_Mutation_p.E112K	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		GACAATAAAGGAAAGATTCAG	0.458													45	28					0	0	0.000680045	0	0
C5orf45	51149	broad.mit.edu	37	5	179264662	179264663	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:179264662_179264663GG>AA	uc003mla.2	-	7	804_805	c.760_761CC>TT	c.(760-762)CCC>TTC	p.P254F	SQSTM1_uc011dgr.1_3'UTR|SQSTM1_uc011dgs.1_3'UTR|SQSTM1_uc003mkw.3_3'UTR|SQSTM1_uc003mkx.2_3'UTR|C5orf45_uc003mky.2_Intron|C5orf45_uc011dgt.1_Intron|C5orf45_uc011dgu.1_Intron|C5orf45_uc003mlc.2_Missense_Mutation_p.P199F|C5orf45_uc003mlb.2_Missense_Mutation_p.P120F	NM_016175	NP_057259	Q6NTE8	CE045_HUMAN	hypothetical protein LOC51149 isoform 1	254											0						AGCTGGCCTGGGGTCCCTCTGA	0.589													260	142					0	0	6.4e-05	0	0
FLT4	2324	broad.mit.edu	37	5	180056259	180056259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:180056259C>T	uc003mma.3	-	7	1064	c.985G>A	c.(985-987)GAA>AAA	p.E329K	FLT4_uc003mlz.3_Missense_Mutation_p.E329K|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Missense_Mutation_p.E329K|FLT4_uc011dgz.1_Intron	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	329	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CAGGCCATACCATGCACAATG	0.622									Congenital_Hereditary_Lymphedema				188	199					0	0	0.000781405	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166799	180166799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:180166799C>T	uc003mmf.1	-	1	260	c.260G>A	c.(259-261)GGG>GAG	p.G87E		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCGGTCCACCCCGCAAAGGTT	0.592													32	194					0	0	0.001512	0	0
TUBB2A	7280	broad.mit.edu	37	6	3154135	3154135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:3154135C>T	uc003mvc.2	-	4	1386	c.1300G>A	c.(1300-1302)GGG>AGG	p.G434R	TUBB2A_uc003mvb.2_Missense_Mutation_p.G427R|TUBB2A_uc003mvd.2_Missense_Mutation_p.G397R	NM_001069	NP_001060	Q13885	TBB2A_HUMAN	tubulin, beta 2	434					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			skin(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.0895)				TCGAACTCCCCTTGTTCGTCG	0.557													190	398					0	0	0.000781405	0	0
NRN1	51299	broad.mit.edu	37	6	5999216	5999216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:5999216G>A	uc003mwu.2	-	3	1073	c.422C>T	c.(421-423)TCC>TTC	p.S141F	NRN1_uc003mwt.2_Missense_Mutation_p.S167F	NM_016588	NP_057672	Q9NPD7	NRN1_HUMAN	neuritin precursor	141						anchored to membrane|plasma membrane					0	Ovarian(93;0.0816)	all_hematologic(90;0.151)		OV - Ovarian serous cystadenocarcinoma(45;0.00415)		CGCTCAGAAGGAAAGCCAGGT	0.647													61	99					0	0	0.000781405	0	0
DSP	1832	broad.mit.edu	37	6	7583110	7583110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:7583110C>T	uc003mxp.1	+	24	5894	c.5615C>T	c.(5614-5616)TCC>TTC	p.S1872F	DSP_uc003mxq.1_Missense_Mutation_p.S1273F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1872	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACTCAATATTCCCGCAAGGAG	0.453													168	281					0	0	0.000781405	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7986944	7986944	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:7986944T>C	uc003mxx.3	+	1	610	c.175T>C	c.(175-177)TCA>CCA	p.S59P	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TGTCGATTCCTCAGGAGAGAC	0.512													51	108					0	0	0.000781405	0	0
HIVEP1	3096	broad.mit.edu	37	6	12125552	12125552	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:12125552G>C	uc003nac.2	+	4	5703	c.5524G>C	c.(5524-5526)GGA>CGA	p.G1842R	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1842					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TTCATCAACAGGATGCTCTAA	0.353													4	146					0	0	0.00024832	0	0
HIVEP1	3096	broad.mit.edu	37	6	12163783	12163783	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:12163783T>C	uc003nac.2	+	9	7425	c.7246T>C	c.(7246-7248)TTT>CTT	p.F2416L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2416					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ATACTCCACGTTTGTGCCCCT	0.527													4	254					0	0	8.12818e-05	0	0
DCDC2	51473	broad.mit.edu	37	6	24291202	24291202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:24291202C>T	uc003ndx.2	-	5	964	c.662G>A	c.(661-663)AGT>AAT	p.S221N	DCDC2_uc003ndy.2_Missense_Mutation_p.S221N	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	221	Doublecortin 2.				cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				AAGTAACTCACTGTAAGGCAG	0.408													26	56					0	0	0.000586117	0	0
FAM65B	9750	broad.mit.edu	37	6	24875982	24875982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:24875982G>A	uc003neo.1	-	2	214	c.38C>T	c.(37-39)CCC>CTC	p.P13L	FAM65B_uc011djs.1_Missense_Mutation_p.P42L|FAM65B_uc011dju.1_Missense_Mutation_p.P47L|FAM65B_uc003nep.2_Missense_Mutation_p.P13L|FAM65B_uc011djt.1_Missense_Mutation_p.P13L	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	13				P -> A (in Ref. 1; AAC51134).	cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						GATCCCATTGGGCCCTCCAGG	0.527													8	18					0	0	0.000978159	0	0
HIST1H3A	8350	broad.mit.edu	37	6	26021002	26021002	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:26021002G>A	uc003nfp.1	+	1	285	c.285G>A	c.(283-285)GAG>GAA	p.E95E	HIST1H1A_uc003nfo.2_5'Flank|HIST1H4A_uc003nfq.2_5'Flank	NM_003529	NP_003520	P68431	H31_HUMAN	histone cluster 1, H3a	95					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)|pancreas(1)	2						CTCTGCAGGAGGCGTGCGAGG	0.567													158	227					0	0	0.000781405	0	0
PGBD1	84547	broad.mit.edu	37	6	28268620	28268620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:28268620C>T	uc003nky.2	+	7	1359	c.989C>T	c.(988-990)TCC>TTC	p.S330F	PGBD1_uc003nkz.2_Missense_Mutation_p.S330F	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	330					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						CACATCTCATCCCTGGAATAT	0.488													41	79					0	0	0.000374591	0	0
TRIM27	5987	broad.mit.edu	37	6	28887960	28887961	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:28887960_28887961GG>AA	uc003nlr.2	-	3	934_935	c.575_576CC>TT	c.(574-576)TCC>TTT	p.S192F	TRIM27_uc003nls.2_Missense_Mutation_p.S192F|TRIM27_uc003nlt.1_Missense_Mutation_p.S192F	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	192					cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						GCTCCTTTAAGGAGTGATACAG	0.5			T	RET	papillary thyroid								352	558					0	0	6.4e-05	0	0
OR2W1	26692	broad.mit.edu	37	6	29012512	29012512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:29012512C>T	uc003nlw.2	-	1	441	c.441G>A	c.(439-441)ATG>ATA	p.M147I		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TACTCCAGATCATGATAATCA	0.373													74	122					0	0	0.000781405	0	0
OR5V1	81696	broad.mit.edu	37	6	29323164	29323164	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:29323164T>A	uc011dlo.1	-	1	891	c.809A>T	c.(808-810)AAA>ATA	p.K270I		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						CAACCTATCTTTCTTTAATGA	0.418													57	122					0	0	0.000781405	0	0
OR10C1	442194	broad.mit.edu	37	6	29408527	29408527	+	Silent	SNP	C	T	T	rs138514441	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:29408527C>T	uc011dlp.1	+	1	735	c.735C>T	c.(733-735)ATC>ATT	p.I245I	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCACCTGATCATGGTCTCCC	0.582													353	541					0	0	0.000781405	0	0
MOG	4340	broad.mit.edu	37	6	29627395	29627395	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:29627395C>T	uc003nnf.2	+	2	566	c.388C>T	c.(388-390)CGA>TGA	p.R130*	MOG_uc003qzk.1_Nonsense_Mutation_p.R130*|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Nonsense_Mutation_p.R130*|MOG_uc003nmz.2_Nonsense_Mutation_p.R130*|MOG_uc011dlt.1_Nonsense_Mutation_p.R60*|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Nonsense_Mutation_p.R130*|MOG_uc003nne.2_Nonsense_Mutation_p.R130*|MOG_uc003nng.2_Nonsense_Mutation_p.R130*|MOG_uc003nnh.2_Nonsense_Mutation_p.R130*|MOG_uc003nni.2_Nonsense_Mutation_p.R130*|MOG_uc003nnj.2_Nonsense_Mutation_p.R130*|MOG_uc003nnk.2_Nonsense_Mutation_p.R130*	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	130	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						CTGCTTCTTCCGAGATCATTC	0.453													42	88					0	0	0.000509022	0	0
HLA-A	3105	broad.mit.edu	37	6	29911199	29911199	+	Silent	SNP	C	T	T	rs41559615		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:29911199C>T	uc003nol.2	+	3	498	c.498C>T	c.(496-498)ATC>ATT	p.I166I	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_RNA|HLA-A_uc010jrq.2_Silent_p.I45I|HLA-A_uc003nok.2_Silent_p.I45I|HLA-A_uc003non.2_Silent_p.I166I|HLA-A_uc003noo.2_Silent_p.I166I|HLA-A_uc010jrr.2_Silent_p.I166I|HLA-A_uc003nom.2_Silent_p.I45I|HLA-A_uc010klp.2_Silent_p.I138I|HLA-A_uc011dmc.1_Silent_p.I45I|HLA-A_uc011dmd.1_Silent_p.I45I	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	166	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CGGCTCAGATCACCAAGCGCA	0.652									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			6	106					0	0	0.000781405	0	0
PPP1R10	5514	broad.mit.edu	37	6	30569809	30569809	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:30569809G>A	uc003nqn.1	-	19	3169	c.2617C>T	c.(2617-2619)CGA>TGA	p.R873*	PPP1R10_uc010jsc.1_Nonsense_Mutation_p.R527*	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	873	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GGCGGCCCTCGATGGTCATGG	0.682													144	236					0	0	0.000781405	0	0
C6orf15	29113	broad.mit.edu	37	6	31079247	31079247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:31079247G>A	uc003nsk.1	-	2	889	c.889C>T	c.(889-891)CCT>TCT	p.P297S		NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	297	Pro-rich.										0						ACTCCAGGAGGAAATGGGTTA	0.522													105	144					0	0	0.000781405	0	0
BAT2	7916	broad.mit.edu	37	6	31599065	31599065	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:31599065A>C	uc003nvb.3	+	16	2864	c.2615A>C	c.(2614-2616)GAA>GCA	p.E872A	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.E872A	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	872	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GGCAGTGATGAAGTGGCCAAG	0.637													160	352					0	0	0.000781405	0	0
MSH5	4439	broad.mit.edu	37	6	31711766	31711766	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:31711766C>T	uc003nwv.1	+	6	580	c.501C>T	c.(499-501)TTC>TTT	p.F167F	MSH5_uc003nwt.1_Silent_p.F167F|MSH5_uc003nwu.1_Silent_p.F167F|MSH5_uc003nww.1_Silent_p.F167F|MSH5_uc003nwx.1_Silent_p.F167F|MSH5_uc011dof.1_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	167					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						AAATCCTCTTCCTCTCTTCCA	0.522								Direct_reversal_of_damage|MMR					375	584					0	0	0.000781405	0	0
VARS	7407	broad.mit.edu	37	6	31749511	31749511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:31749511G>A	uc003nxe.2	-	20	2798	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F	VARS_uc003nxf.1_5'Flank|VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	792				S -> F (in Ref. 1; CAA41990).	translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GAGGCCAGAGGAGAACCAGGT	0.602													366	574					0	0	0.000781405	0	0
SKIV2L	6499	broad.mit.edu	37	6	31930493	31930493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:31930493C>T	uc003nyn.1	+	12	1603	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F	SKIV2L_uc011dou.1_Missense_Mutation_p.S247F|SKIV2L_uc011dov.1_Missense_Mutation_p.S212F	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	405	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CTCCCCAGCTCCATGCTGTAC	0.557													401	560					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32041447	32041447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:32041447G>A	uc003nzl.2	-	12	4860	c.4658C>T	c.(4657-4659)CCC>CTC	p.P1553L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1640	Fibronectin type-III 8.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACAGACAGGGGGCCCATGCG	0.567													380	571					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32046957	32046957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:32046957C>T	uc003nzl.2	-	11	4430	c.4228G>A	c.(4228-4230)GAT>AAT	p.D1410N		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1497	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCCGCCCATCCCTGTCCTTG	0.637													399	565					0	0	0.000781405	0	0
PBX2	5089	broad.mit.edu	37	6	32155039	32155039	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:32155039G>T	uc003oav.1	-	6	1275	c.1004C>A	c.(1003-1005)CCG>CAG	p.P335Q	PBX2_uc003oaw.2_Missense_Mutation_p.P335Q	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	335							transcription factor binding			ovary(1)	1						AGGGGGTGTCGGGGAGCTGGT	0.547													10	939					0.000442599	0.00304971	0.000442599	1	0
PBX2	5089	broad.mit.edu	37	6	32155759	32155759	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:32155759G>T	uc003oav.1	-	4	989	c.718C>A	c.(718-720)CGT>AGT	p.R240S	PBX2_uc003oaw.2_Missense_Mutation_p.R240S	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	240							transcription factor binding			ovary(1)	1						TCCAGGAAACGGGAGCGCAGG	0.607													12	953					0.000673444	0.0046179	0.000673444	1	0
COL11A2	1302	broad.mit.edu	37	6	33146224	33146224	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:33146224C>T	uc003ocx.1	-	19	1989	c.1761G>A	c.(1759-1761)GAG>GAA	p.E587E	COL11A2_uc010jul.1_5'Flank|COL11A2_uc003ocy.1_Silent_p.E501E|COL11A2_uc003ocz.1_Silent_p.E480E	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	587	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TCTCTCCATCCTCACCAGGGG	0.592													345	543					0	0	0.000781405	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33414445	33414445	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:33414445C>A	uc011dri.1	+	17	3871	c.3676C>A	c.(3676-3678)CAG>AAG	p.Q1226K	SYNGAP1_uc010juy.2_Missense_Mutation_p.Q1195K|SYNGAP1_uc010juz.2_Missense_Mutation_p.Q938K	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	1226					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GCTGCTGTCCCAGGAAGAACA	0.552													10	607					0.00136819	0.0093286	0.00136819	1	0
GRM4	2914	broad.mit.edu	37	6	34029805	34029805	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:34029805C>A	uc003oir.3	-	3	907	c.737G>T	c.(736-738)GGG>GTG	p.G246V	GRM4_uc011dsn.1_Missense_Mutation_p.G246V|GRM4_uc010jvh.2_Missense_Mutation_p.G246V|GRM4_uc010jvi.2_5'UTR|GRM4_uc003oio.2_5'UTR|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.G106V|GRM4_uc003oiq.2_Missense_Mutation_p.G113V|GRM4_uc011dsm.1_Missense_Mutation_p.G77V	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	246	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GCACACGCCCCCTGCAGGAGG	0.647													10	471					2.17888e-05	0.00015154	0.000442599	1	0
ANKS1A	23294	broad.mit.edu	37	6	34949602	34949602	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:34949602C>T	uc003ojx.3	+	4	713	c.571C>T	c.(571-573)CTG>TTG	p.L191L	ANKS1A_uc011dss.1_Silent_p.L191L|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR|ANKS1A_uc010jvr.1_RNA	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	191	ANK 4.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CCTGGCAGCACTGTACGGGCG	0.562													60	91					0	0	0.000781405	0	0
CLPS	1208	broad.mit.edu	37	6	35763000	35763000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:35763000C>T	uc003ole.1	-	3	299	c.262G>A	c.(262-264)GGA>AGA	p.G88R	CLPS_uc003olf.1_Missense_Mutation_p.G47R	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	88					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						GTCTTGTCTCCCTCACAGGTC	0.557													181	494					0	0	0.000781405	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773671	35773671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:35773671C>T	uc003olg.1	+	1	601	c.224C>T	c.(223-225)TCC>TTC	p.S75F		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	75	Helical; (Potential).					integral to membrane				skin(1)	1						GTGCTGTCCTCCGAGCTCATC	0.587													367	566					0	0	0.000781405	0	0
BRPF3	27154	broad.mit.edu	37	6	36196743	36196743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:36196743C>T	uc003olv.3	+	12	3568	c.3344C>T	c.(3343-3345)CCG>CTG	p.P1115L	BRPF3_uc010jwb.2_Missense_Mutation_p.P845L|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_Intron|BRPF3_uc011dtk.1_Missense_Mutation_p.P781L|BRPF3_uc010jwd.2_Missense_Mutation_p.P17L	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	1115	PWWP.				histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCTGTCCCCCCGCTGGACGTG	0.582													71	187					0	0	0.000781405	0	0
C6orf222	389384	broad.mit.edu	37	6	36298017	36298017	+	Missense_Mutation	SNP	C	T	T	rs149916620		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:36298017C>T	uc003oly.2	-	2	629	c.451G>A	c.(451-453)GAC>AAC	p.D151N		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	151										skin(2)|ovary(1)|breast(1)	4						GGCTTCTTGTCGTGGTGGGCT	0.622													84	152					0	0	0.000781405	0	0
FGD2	221472	broad.mit.edu	37	6	36983600	36983600	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:36983600C>T	uc010jwp.1	+	9	1257	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F	FGD2_uc003ong.2_Silent_p.F84F|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	362	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						GCGCCCAGTTCCAGGTGAGGA	0.612													26	47					0	0	0.00106085	0	0
DNAH8	1769	broad.mit.edu	37	6	38723833	38723833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:38723833G>A	uc003ooe.1	+	8	1442	c.842G>A	c.(841-843)AGA>AAA	p.R281K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACCTCAGAGAGAATGACCTCA	0.378													25	67					0	0	0.000720815	0	0
DNAH8	1769	broad.mit.edu	37	6	38805727	38805727	+	Missense_Mutation	SNP	G	A	A	rs151175737	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:38805727G>A	uc003ooe.1	+	31	4324	c.3724G>A	c.(3724-3726)GAT>AAT	p.D1242N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGCCAGTTTCGATGATCTGTG	0.269													5	21					0	0	0.00116845	0	0
DNAH8	1769	broad.mit.edu	37	6	38810519	38810519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:38810519C>T	uc003ooe.1	+	33	4634	c.4034C>T	c.(4033-4035)TCA>TTA	p.S1345L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCAGTGAGTCATGTCCTCTA	0.383													24	35					0	0	0.000375601	0	0
DNAH8	1769	broad.mit.edu	37	6	38885165	38885165	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:38885165T>G	uc003ooe.1	+	67	10240	c.9640T>G	c.(9640-9642)TGG>GGG	p.W3214G	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TAAGCCATCATGGGGAGAGTC	0.388													14	27					0	0	0.000422831	0	0
DAAM2	23500	broad.mit.edu	37	6	39846280	39846280	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:39846280G>A	uc003oow.2	+	13	1617	c.1461G>A	c.(1459-1461)AAG>AAA	p.K487K	DAAM2_uc010jxc.2_Silent_p.K487K|DAAM2_uc003oox.2_Silent_p.K487K	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	487	Potential.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					ACAAAATGAAGGACAAGCTGG	0.567													12	21					0	0	0.000978159	0	0
TREML4	285852	broad.mit.edu	37	6	41196546	41196546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:41196546C>T	uc003oqc.2	+	2	262	c.158C>T	c.(157-159)TCC>TTC	p.S53F	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	53	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAGCCCAAATCCTGGTGTCAG	0.527													104	158					0	0	0.000781405	0	0
NCR2	9436	broad.mit.edu	37	6	41304018	41304018	+	Silent	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:41304018A>C	uc003oqh.2	+	2	333	c.246A>C	c.(244-246)ACA>ACC	p.T82T	NCR2_uc003oqi.2_Silent_p.T82T|NCR2_uc003oqj.2_Silent_p.T82T	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	82	Extracellular (Potential).|Ig-like.				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CTCGATTCACAATCTGGGACG	0.522													53	105					0	0	0.000781405	0	0
FOXP4	116113	broad.mit.edu	37	6	41565545	41565546	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:41565545_41565546CC>TA	uc003oql.2	+	16	2210_2211	c.1752_1753CC>TA	c.(1750-1755)CCCCTC>CCTATC	p.L585I	FOXP4_uc003oqm.2_Missense_Mutation_p.L583I|FOXP4_uc003oqn.2_Missense_Mutation_p.L572I	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	585					embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					GCAGCTTCCCCCTCCTCAACAG	0.683											OREG0004068	type=REGULATORY REGION|Gene=FOXP4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	62	110					0	0	6.4e-05	0	0
BYSL	705	broad.mit.edu	37	6	41897973	41897973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:41897973C>T	uc003orl.2	+	3	871	c.535C>T	c.(535-537)CCC>TCC	p.P179S		NM_004053	NP_004044	Q13895	BYST_HUMAN	bystin	179					cell adhesion|female pregnancy|ribosome biogenesis	cytoplasm|nucleolus					0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000473)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCAGCTGGACCCCCGGGTCCT	0.612													121	206					0	0	0.000781405	0	0
TTBK1	84630	broad.mit.edu	37	6	43230740	43230740	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:43230740C>T	uc003ouq.1	+	13	1917	c.1638C>T	c.(1636-1638)ATC>ATT	p.I546I	TTBK1_uc011dvg.1_Silent_p.I69I	NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	546						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GGGTCATCATCGACAAGGAGA	0.647													68	140					0	0	0.000781405	0	0
TTBK1	84630	broad.mit.edu	37	6	43250912	43250912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:43250912G>A	uc003ouq.1	+	14	2713	c.2434G>A	c.(2434-2436)GAT>AAT	p.D812N		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	812						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GCTGGCAGACGATCAGAAGGA	0.667													30	40					0	0	0.00106085	0	0
SLC22A7	10864	broad.mit.edu	37	6	43266304	43266304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:43266304C>T	uc003out.2	+	1	307	c.208C>T	c.(208-210)CCC>TCC	p.P70S	SLC22A7_uc010jyl.1_Missense_Mutation_p.P70S|SLC22A7_uc003ous.2_Missense_Mutation_p.P70S	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	70						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			GGCCCATCTTCCCCGGGAGCC	0.662													113	223					0	0	0.000781405	0	0
VEGFA	7422	broad.mit.edu	37	6	43745284	43745284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:43745284C>T	uc003owc.2	+	3	1228	c.197C>T	c.(196-198)CCT>CTT	p.P66L	VEGFA_uc003owb.2_Missense_Mutation_p.P66L|VEGFA_uc003owd.2_Missense_Mutation_p.P246L|VEGFA_uc003owf.2_Missense_Mutation_p.P246L|VEGFA_uc003owe.2_Missense_Mutation_p.P246L|VEGFA_uc003owg.2_Missense_Mutation_p.P246L|VEGFA_uc003owh.2_Missense_Mutation_p.P246L|VEGFA_uc003owi.2_Missense_Mutation_p.P246L|VEGFA_uc003owj.2_Missense_Mutation_p.P246L|VEGFA_uc010jyx.2_Missense_Mutation_p.P66L|VEGFA_uc003owk.2_5'Flank	NM_001025370	NP_001020541	P15692	VEGFA_HUMAN	vascular endothelial growth factor A isoform f	66					basophil chemotaxis|cellular response to hypoxia|induction of positive chemotaxis|induction of positive chemotaxis|platelet activation|platelet degranulation|platelet-derived growth factor receptor signaling pathway|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cell adhesion|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of leukocyte migration|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular permeability|regulation of cell shape|vascular endothelial growth factor receptor signaling pathway|vasculogenesis	cell surface|extracellular space|membrane|platelet alpha granule lumen	cell surface binding|chemoattractant activity|cytokine activity|fibronectin binding|growth factor activity|heparin binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|vascular endothelial growth factor receptor 1 binding|vascular endothelial growth factor receptor 2 binding|vascular endothelial growth factor receptor binding			ovary(1)|breast(1)	2	all_cancers(18;5.46e-07)|all_epithelial(2;5.96e-08)|Lung NSC(15;0.000157)|all_lung(25;0.000486)|Hepatocellular(11;0.00309)		all cancers(41;0.000413)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0742)|OV - Ovarian serous cystadenocarcinoma(102;0.196)		Atorvastatin(DB01076)|Bevacizumab(DB00112)|Carvedilol(DB01136)|Ginkgo biloba(DB01381)|Gliclazide(DB01120)|Minocycline(DB01017)|Ranibizumab(DB01270)|Simvastatin(DB00641)	CAGGAGTACCCTGATGAGATC	0.562													196	283					0	0	0.000781405	0	0
SLC29A1	2030	broad.mit.edu	37	6	44198583	44198583	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:44198583A>G	uc003owu.1	+	8	1052	c.723A>G	c.(721-723)GAA>GAG	p.E241E	SLC29A1_uc003owv.1_Silent_p.E241E|SLC29A1_uc003oww.1_Silent_p.E320E|SLC29A1_uc003owx.1_Silent_p.E241E|SLC29A1_uc003owy.1_Silent_p.E241E|SLC29A1_uc003owz.1_Silent_p.E241E	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	241	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	TCAAGCTTGAAGGACCCGGGG	0.468													292	590					0	0	0.000781405	0	0
SPATS1	221409	broad.mit.edu	37	6	44320496	44320496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:44320496G>A	uc003oxk.2	+	2	520	c.173G>A	c.(172-174)GGA>GAA	p.G58E	SPATS1_uc003oxg.2_RNA|SPATS1_uc010jzb.2_5'UTR	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1	58										skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GAATCTAAGGGATGTTTTGCC	0.433													70	102					0	0	0.000781405	0	0
SLC25A27	9481	broad.mit.edu	37	6	46623599	46623599	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:46623599C>T	uc003oyh.2	+	2	377	c.126C>T	c.(124-126)CTC>CTT	p.L42L	SLC25A27_uc011dwb.1_Silent_p.L42L|SLC25A27_uc003oyg.2_Silent_p.L42L|SLC25A27_uc011dwc.1_5'UTR|SLC25A27_uc003oyi.2_5'Flank	NM_004277	NP_004268	O95847	UCP4_HUMAN	solute carrier family 25, member 27	42	Solcar 1.				generation of precursor metabolites and energy|transport	integral to membrane|mitochondrial inner membrane					0			Lung(136;0.192)			CCCTGGATCTCACAAAAACTC	0.443													167	308					0	0	0.000781405	0	0
GPR116	221395	broad.mit.edu	37	6	46847631	46847631	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:46847631C>T	uc003oyo.3	-	9	1249	c.960G>A	c.(958-960)TCG>TCA	p.S320S	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Silent_p.S320S|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Silent_p.S320S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	320	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CGGTGTAAATCGAGAATCTGC	0.463													24	44					0	0	0.000586117	0	0
RHAG	6005	broad.mit.edu	37	6	49585872	49585872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:49585872C>T	uc003ozk.3	-	3	463	c.401G>A	c.(400-402)GGA>GAA	p.G134E	RHAG_uc010jzl.2_Missense_Mutation_p.G134E|RHAG_uc010jzm.2_Missense_Mutation_p.G134E	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	134	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					GCTCGTTTTTCCCAGGACAGC	0.393													42	107					0	0	0.000319135	0	0
FAM83B	222584	broad.mit.edu	37	6	54804673	54804673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:54804673G>A	uc003pck.2	+	5	1020	c.904G>A	c.(904-906)GAA>AAA	p.E302K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	302										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGCCCTCTGGGAAAATGGCAC	0.428													15	22					0	0	0.000219431	0	0
HCRTR2	3062	broad.mit.edu	37	6	55120104	55120104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:55120104G>A	uc003pcl.2	+	3	888	c.573G>A	c.(571-573)ATG>ATA	p.M191I	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.M126I	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	191	Helical; Name=4; (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCATCGTCATGGAGTGCAGCA	0.498													17	33					0	0	0.000422831	0	0
HCRTR2	3062	broad.mit.edu	37	6	55128616	55128616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:55128616G>A	uc003pcl.2	+	4	1073	c.758G>A	c.(757-759)CGA>CAA	p.R253Q	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.R188Q	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	253	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTCTGGTGTCGACAGGTATAT	0.368													4	7					0	0	0.00024832	0	0
BMP5	653	broad.mit.edu	37	6	55638936	55638936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:55638936C>T	uc003pcq.2	-	4	1650	c.938G>A	c.(937-939)CGA>CAA	p.R313Q	BMP5_uc011dxf.1_Missense_Mutation_p.R313Q	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	313					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCTCACGGATCGAAGAAGTAC	0.453													35	48					0	0	0.000491102	0	0
COL21A1	81578	broad.mit.edu	37	6	55924020	55924020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:55924020C>T	uc003pcs.2	-	29	2861	c.2629G>A	c.(2629-2631)GAA>AAA	p.E877K	COL21A1_uc010jzz.2_Missense_Mutation_p.E262K|COL21A1_uc011dxg.1_Missense_Mutation_p.E250K|COL21A1_uc011dxh.1_Missense_Mutation_p.E228K|COL21A1_uc003pcr.2_Missense_Mutation_p.E234K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	877	Collagen-like 6.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTCCCTTTTTCCCCATTTCTT	0.448													4	8					0	0	0.00024832	0	0
ZNF451	26036	broad.mit.edu	37	6	57006886	57006886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:57006886C>T	uc003pdm.1	+	9	1221	c.997C>T	c.(997-999)CAT>TAT	p.H333Y	ZNF451_uc003pdl.2_Missense_Mutation_p.H333Y|ZNF451_uc003pdn.1_Missense_Mutation_p.H333Y|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.H333Y	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	333	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			GCTCACTGCCCATTTCAGGTT	0.433													45	60					0	0	0.000781405	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62887131	62887131	+	Missense_Mutation	SNP	G	A	A	rs140624162		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:62887131G>A	uc003peg.2	-	2	425	c.178C>T	c.(178-180)CTC>TTC	p.L60F		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	60					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding	p.L60F(1)		skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		CTTTCTGAGAGCTTTATGTTT	0.328													4	10					0	0	0.00116845	0	0
BAI3	577	broad.mit.edu	37	6	69684752	69684752	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:69684752C>A	uc003pev.3	+	9	2071	c.1623C>A	c.(1621-1623)GCC>GCA	p.A541A	BAI3_uc010kak.2_Silent_p.A541A	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	541	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CCCTGAATGCCACAGGTACAG	0.453													4	28					3.59834e-05	0.000249929	0.00116845	1	0
BAI3	577	broad.mit.edu	37	6	70034864	70034864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:70034864G>A	uc003pev.3	+	21	3363	c.2915G>A	c.(2914-2916)GGA>GAA	p.G972E	BAI3_uc010kak.2_Missense_Mutation_p.G972E|BAI3_uc011dxx.1_Missense_Mutation_p.G178E|BAI3_uc003pex.1_Missense_Mutation_p.G102E	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	972	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GCTGTAACTGGAAAAATTAGG	0.413													25	70					0	0	0.00127121	0	0
RIMS1	22999	broad.mit.edu	37	6	72955546	72955546	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:72955546C>G	uc003pga.2	+	11	2187	c.2110C>G	c.(2110-2112)CAC>GAC	p.H704D	RIMS1_uc011dyb.1_Missense_Mutation_p.H330D|RIMS1_uc003pgc.2_Missense_Mutation_p.H330D|RIMS1_uc010kaq.2_Missense_Mutation_p.H178D|RIMS1_uc011dyc.1_Missense_Mutation_p.H178D|RIMS1_uc010kar.2_Missense_Mutation_p.H97D|RIMS1_uc011dyd.1_Missense_Mutation_p.H163D|RIMS1_uc003pgb.3_Missense_Mutation_p.H330D|RIMS1_uc010kas.1_Missense_Mutation_p.H163D	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	704					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TGAGAGCTCCCACCCTCCACT	0.363													3	18					0	0	0.000602214	0	0
KCNQ5	56479	broad.mit.edu	37	6	73787572	73787572	+	Missense_Mutation	SNP	G	A	A	rs148819747		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:73787572G>A	uc003pgk.2	+	5	1227	c.880G>A	c.(880-882)GAG>AAG	p.E294K	KCNQ5_uc003pgj.3_Missense_Mutation_p.E294K|KCNQ5_uc011dyh.1_Missense_Mutation_p.E294K|KCNQ5_uc011dyi.1_Missense_Mutation_p.E294K|KCNQ5_uc010kat.2_Missense_Mutation_p.E294K|KCNQ5_uc011dyj.1_Missense_Mutation_p.E294K|KCNQ5_uc011dyk.1_Missense_Mutation_p.E53K	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	294					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity	p.E294K(1)		ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGCCAATAAAGAGTTTTCTAC	0.313													14	6					0	0	0.000308642	0	0
SENP6	26054	broad.mit.edu	37	6	76412655	76412655	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:76412655G>A	uc003pid.3	+	19	3202	c.2583G>A	c.(2581-2583)GTG>GTA	p.V861V	SENP6_uc003pie.3_Silent_p.V854V|SENP6_uc010kbf.2_Intron	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	861	Protease.				proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				AATACAGTGTGAAAAAAATAA	0.353													64	27					0	0	0.000781405	0	0
DOPEY1	23033	broad.mit.edu	37	6	83847746	83847746	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:83847746C>T	uc003pjs.1	+	21	4245	c.3985C>T	c.(3985-3987)CTG>TTG	p.L1329L	DOPEY1_uc011dyy.1_Silent_p.L1320L|DOPEY1_uc010kbl.1_Silent_p.L1320L|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	1329					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		CAGTGATGGTCTGGATTTAGA	0.373													12	11					0	0	0.000978159	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86324599	86324599	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:86324599G>A	uc003pla.2	-	11	2288	c.1747C>T	c.(1747-1749)CAG>TAG	p.Q583*	SYNCRIP_uc003pku.2_Intron|SYNCRIP_uc003pkw.2_Intron|SYNCRIP_uc003pky.2_Intron|SYNCRIP_uc003pkv.2_Intron|SYNCRIP_uc003pkx.2_Intron|SYNCRIP_uc003pkz.2_Nonsense_Mutation_p.Q548*	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	583					CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CCCCAGTTCTGATTATTGGTC	0.527													215	125					0	0	0.000781405	0	0
HTR1E	3354	broad.mit.edu	37	6	87725874	87725874	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:87725874C>T	uc003pli.2	+	2	1525	c.822C>T	c.(820-822)CAC>CAT	p.H274H		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	274	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	ATCTAGATCACCCAGGAGAAC	0.517													320	175					0	0	0.000781405	0	0
GJA10	84694	broad.mit.edu	37	6	90605577	90605577	+	Missense_Mutation	SNP	G	A	A	rs140533217	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:90605577G>A	uc011eaa.1	+	1	1390	c.1390G>A	c.(1390-1392)GAA>AAA	p.E464K		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	464	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		TCCTCACTGGGAAAACAGCCC	0.502													227	161					0	0	0.000781405	0	0
EPHA7	2045	broad.mit.edu	37	6	93979364	93979364	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:93979364C>T	uc003poe.2	-	7	1705	c.1464G>A	c.(1462-1464)CGG>CGA	p.R488R	EPHA7_uc003pof.2_Silent_p.R488R|EPHA7_uc011eac.1_Silent_p.R488R	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	488	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TTGAGTAGGTCCGTTCCCTTT	0.368													65	38					0	0	0.000781405	0	0
RFX6	222546	broad.mit.edu	37	6	117201821	117201821	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:117201821C>T	uc003pxm.2	+	3	558	c.495C>T	c.(493-495)ACC>ACT	p.T165T		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	165	RFX-type winged-helix.				glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GTGCGGCCACCTTTGGAAAGG	0.398													107	60					0	0	0.000781405	0	0
ROS1	6098	broad.mit.edu	37	6	117641174	117641174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:117641174C>T	uc003pxp.1	-	36	5996	c.5797G>A	c.(5797-5799)GAG>AAG	p.E1933K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Missense_Mutation_p.E259K	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1933	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTTTCAATCTCCTCTTGGGTT	0.448			T	GOPC|ROS1	glioblastoma|NSCLC								9	6					0	0	0.000274275	0	0
ROS1	6098	broad.mit.edu	37	6	117687279	117687279	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:117687279A>G	uc003pxp.1	-	18	2971	c.2772T>C	c.(2770-2772)AAT>AAC	p.N924N	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	924	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTGTGAACTGATTAAATCTGG	0.398			T	GOPC|ROS1	glioblastoma|NSCLC								204	106					0	0	0.000781405	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762608	130762608	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:130762608G>A	uc003qca.2	+	3	1912	c.1041G>A	c.(1039-1041)AGG>AGA	p.R347R	TMEM200A_uc010kfh.2_Silent_p.R347R|TMEM200A_uc010kfi.2_Silent_p.R347R|TMEM200A_uc003qcb.2_Silent_p.R347R	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	347	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TGCTACCAAGGAATAATTCCA	0.517													13	5					0	0	0.000566183	0	0
CTAGE9	643854	broad.mit.edu	37	6	132029987	132029987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:132029987G>A	uc011ece.1	-	1	2171	c.2171C>T	c.(2170-2172)CCT>CTT	p.P724L	ENPP3_uc003qcu.3_Intron|ENPP3_uc010kfq.2_Intron|ENPP3_uc003qcv.2_Intron	NM_001145659	NP_001139131	A4FU28	CTGE9_HUMAN	CTAGE family, member 4-like	724	Pro-rich.					integral to membrane					0						TCCTGGAGGAGGTGGGGGGAA	0.512													257	297					0	0	0.000781405	0	0
TAAR2	9287	broad.mit.edu	37	6	132939186	132939186	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:132939186G>A	uc003qdl.1	-	2	159	c.159C>T	c.(157-159)TCC>TCT	p.S53S	TAAR2_uc010kfr.1_Silent_p.S8S	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	53	Helical; Name=1; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		TGATGAATATGGATCCTGCCA	0.403													15	7					0	0	0.000566183	0	0
TAAR1	134864	broad.mit.edu	37	6	132966200	132966200	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:132966200G>C	uc003qdm.1	-	1	943	c.943C>G	c.(943-945)CTG>GTG	p.L315V		NM_138327	NP_612200	Q96RJ0	TAAR1_HUMAN	trace amine associated receptor 1	315	Cytoplasmic (Potential).					plasma membrane					0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00616)|GBM - Glioblastoma multiforme(226;0.0154)	Amphetamine(DB00182)	ATCATCTTCAGTGCTTTTCTA	0.299													2	9					0	0	6.4e-05	0	0
AHI1	54806	broad.mit.edu	37	6	135784313	135784313	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:135784313T>C	uc003qgi.2	-	8	1265	c.881A>G	c.(880-882)CAA>CGA	p.Q294R	AHI1_uc003qgh.2_Missense_Mutation_p.Q294R|AHI1_uc003qgj.2_Missense_Mutation_p.Q294R|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Missense_Mutation_p.Q294R	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	294						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		TGTATCATCTTGCATGCTGTC	0.313													4	100					0	0	0.000602214	0	0
PDE7B	27115	broad.mit.edu	37	6	136502373	136502374	+	Nonsense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:136502373_136502374GA>AT	uc003qgp.2	+	11	1260_1261	c.957_958GA>AT	c.(955-960)TTGAAG>TTATAG	p.K320*	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Nonsense_Mutation_p.K372*	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	320	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	AGATCGCCTTGAAGTGTGCTGA	0.465													183	116					0	0	6.4e-05	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599099	136599099	+	Missense_Mutation	SNP	G	A	A	rs57380832		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:136599099G>A	uc003qgx.1	-	4	1173	c.920C>T	c.(919-921)CCA>CTA	p.P307L	BCLAF1_uc003qgw.1_Missense_Mutation_p.P307L|BCLAF1_uc003qgy.1_Missense_Mutation_p.P305L|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.P305L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	307					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AGCATTCTGTGGTGCGATTGT	0.448													57	49					0	0	0.000781405	0	0
MAP3K5	4217	broad.mit.edu	37	6	136913610	136913610	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:136913610T>A	uc003qhc.2	-	22	3382	c.3021A>T	c.(3019-3021)GAA>GAT	p.E1007D	MAP3K5_uc011edj.1_Missense_Mutation_p.E254D|MAP3K5_uc011edk.1_Missense_Mutation_p.E853D	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1007					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGACATCTCTTTCTCCGCAGG	0.473													128	57					0	0	0.000781405	0	0
IFNGR1	3459	broad.mit.edu	37	6	137519434	137519434	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:137519434A>C	uc003qho.2	-	7	1307	c.1204T>G	c.(1204-1206)TGT>GGT	p.C402G	IFNGR1_uc011edm.1_Missense_Mutation_p.C374G	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	402	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	CTCTCAGAACAATTTCTGGAG	0.418													35	20					0	0	0.000953801	0	0
UTRN	7402	broad.mit.edu	37	6	144811249	144811249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:144811249G>A	uc003qkt.2	+	30	4269	c.4177G>A	c.(4177-4179)GAG>AAG	p.E1393K		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1393	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		AACCCTAGAGGAGTTGAGAAG	0.448													275	152					0	0	0.000781405	0	0
C6orf211	79624	broad.mit.edu	37	6	151789520	151789521	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:151789520_151789521GG>AA	uc003qok.1	+	5	860_861	c.601_602GG>AA	c.(601-603)GGA>AAA	p.G201K	C6orf211_uc011ees.1_Missense_Mutation_p.G82K	NM_024573	NP_078849	Q9H993	CF211_HUMAN	hypothetical protein LOC79624	201							protein binding				0			BRCA - Breast invasive adenocarcinoma(37;0.183)	OV - Ovarian serous cystadenocarcinoma(155;5.27e-11)		TCTCTCAGGTGGAGAAAGTAGT	0.351													93	46					0	0	6.4e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152647134	152647134	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:152647134A>G	uc010kiw.2	-	80	15999	c.15397T>C	c.(15397-15399)TCG>CCG	p.S5133P	SYNE1_uc003qot.3_Missense_Mutation_p.S5062P|SYNE1_uc003qou.3_Missense_Mutation_p.S5133P|SYNE1_uc010kiz.2_Missense_Mutation_p.S888P	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5133	Spectrin 16.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGACTAGACGAAGTCTTCAAC	0.353										HNSCC(10;0.0054)			72	61					0	0	0.000781405	0	0
MYCT1	80177	broad.mit.edu	37	6	153019226	153019227	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:153019226_153019227CT>TA	uc003qpd.3	+	1	197_198	c.189_190CT>TA	c.(187-192)AACTTT>AATATT	p.F64I	MYCT1_uc010kjc.1_Missense_Mutation_p.F64I|MYCT1_uc003qpc.3_Missense_Mutation_p.F64I	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	64						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		GGCCAGAAAACTTTTGGGGTAA	0.312													18	22					0	0	6.4e-05	0	0
TIAM2	26230	broad.mit.edu	37	6	155450878	155450878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:155450878G>A	uc003qqb.2	+	6	1794	c.521G>A	c.(520-522)AGG>AAG	p.R174K	TIAM2_uc003qqe.2_Missense_Mutation_p.R174K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	174					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GGGTGTTTAAGGGTCGAGTTC	0.587													57	37					0	0	0.000781405	0	0
ARID1B	57492	broad.mit.edu	37	6	157521970	157521971	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:157521970_157521971GG>AA	uc003qqn.2	+	18	4340_4341	c.4188_4189GG>AA	c.(4186-4191)CCGGAC>CCAAAC	p.D1397N	ARID1B_uc003qqo.2_Missense_Mutation_p.D1357N|ARID1B_uc003qqp.2_Missense_Mutation_p.D1344N	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1402					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		ACTCGGGCCCGGACCGCAGGCC	0.634													109	75					0	0	6.4e-05	0	0
TULP4	56995	broad.mit.edu	37	6	158914642	158914643	+	Missense_Mutation	DNP	CG	AT	AT	rs140306537		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:158914642_158914643CG>AT	uc003qrf.2	+	10	3026_3027	c.1669_1670CG>AT	c.(1669-1671)CGG>ATG	p.R557M	TULP4_uc003qrg.2_Missense_Mutation_p.R557M	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	557					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CAAGCTGCCCCGGGCTGCTCAG	0.653													7	335					0	0	6.4e-05	0	0
FNDC1	84624	broad.mit.edu	37	6	159672449	159672449	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:159672449G>A	uc010kjv.2	+	17	5150	c.4950G>A	c.(4948-4950)AAG>AAA	p.K1650K		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1650						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		ACCTGAAGAAGAGTGACCTGC	0.547													23	12					0	0	0.000229342	0	0
LPA	4018	broad.mit.edu	37	6	160999693	160999693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:160999693G>A	uc003qtl.2	-	28	4453	c.4333C>T	c.(4333-4335)CGC>TGC	p.R1445C		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3953	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CACCAAGGGCGAATCTCAGCA	0.502													15	7					0	0	0.000422831	0	0
LPA	4018	broad.mit.edu	37	6	161020670	161020670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:161020670C>T	uc003qtl.2	-	21	3269	c.3149G>A	c.(3148-3150)GGG>GAG	p.G1050E		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3558	Kringle 32.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GTCCTGTACCCCGGGGGTTTC	0.433													35	10					0	0	0.00058488	0	0
SFT2D1	113402	broad.mit.edu	37	6	166743718	166743718	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:166743718G>A	uc003qux.2	-	2	111	c.81C>T	c.(79-81)TCC>TCT	p.S27S		NM_145169	NP_660152	Q8WV19	SFT2A_HUMAN	SFT2 domain containing 1	27	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	integral to membrane				central_nervous_system(1)	1		Breast(66;0.000148)|Prostate(117;0.109)|Ovarian(120;0.199)		OV - Ovarian serous cystadenocarcinoma(33;2.63e-19)|BRCA - Breast invasive adenocarcinoma(81;4.92e-06)|GBM - Glioblastoma multiforme(31;4.58e-05)		TGAAACTAAGGGATGAGGCAT	0.308													43	19					0	0	0.000781405	0	0
UNC93A	54346	broad.mit.edu	37	6	167721271	167721272	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:167721271_167721272GG>AA	uc003qvq.2	+	7	1156_1157	c.981_982GG>AA	c.(979-984)GCGGTG>GCAATG	p.V328M	UNC93A_uc003qvr.2_Missense_Mutation_p.V286M	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	328	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CCCCAGGCGCGGTGACCCACGT	0.624													111	118					0	0	6.4e-05	0	0
DLL1	28514	broad.mit.edu	37	6	170594138	170594138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:170594138C>T	uc003qxm.2	-	8	1588	c.1118G>A	c.(1117-1119)GGC>GAC	p.G373D		NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	373	Extracellular (Potential).|EGF-like 5.				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		AAAGCAAGGGCCGTCCGCACA	0.577													215	111					0	0	0.000781405	0	0
GPR146	115330	broad.mit.edu	37	7	1097781	1097781	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:1097781C>T	uc003sjw.2	+	2	706	c.630C>T	c.(628-630)CTC>CTT	p.L210L	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPR146_uc003sjx.3_Silent_p.L210L|GPR146_uc003sjy.1_Silent_p.L210L	NM_138445	NP_612454	Q96CH1	GP146_HUMAN	G protein-coupled receptor 146	210	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.74e-15)		TGGTGCTACTCTCCCGCGTCC	0.682													59	105					0	0	0.000781405	0	0
PSMG3	84262	broad.mit.edu	37	7	1608974	1608974	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:1608974A>G	uc003skx.2	-	1	656	c.2T>C	c.(1-3)ATG>ACG	p.M1T	PSMG3_uc011jvx.1_Missense_Mutation_p.M1T|KIAA1908_uc003sla.2_5'Flank|KIAA1908_uc003sky.1_5'Flank|KIAA1908_uc003skz.1_5'Flank	NM_032302	NP_115678	Q9BT73	PSMG3_HUMAN	proteasome assembling chaperone 3	1											0		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.63e-15)		CGTGTCTTCCATGGCGGGGCT	0.527													3	138					0	0	6.4e-05	0	0
TTYH3	80727	broad.mit.edu	37	7	2692625	2692625	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:2692625G>A	uc003smp.2	+	9	1188	c.1001G>A	c.(1000-1002)TGG>TAG	p.W334*	TTYH3_uc010ksn.2_Nonsense_Mutation_p.W54*|TTYH3_uc003smq.2_Nonsense_Mutation_p.W163*	NM_025250	NP_079526	Q9C0H2	TTYH3_HUMAN	tweety 3	334	Extracellular (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.04e-14)		ACCGTCCCCTGGGAGCAGCCG	0.602													45	91					0	0	0.000781405	0	0
AMZ1	155185	broad.mit.edu	37	7	2748707	2748707	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:2748707A>G	uc003smr.1	+	5	963	c.602_splice	c.e5-2	p.E201_splice	AMZ1_uc003sms.1_Intron|AMZ1_uc011jwa.1_Splice_Site	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1								metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		ATCTCTCTCCAGAAGTGGGCG	0.652													99	218					0	0	0.000781405	0	0
SDK1	221935	broad.mit.edu	37	7	3681621	3681621	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:3681621G>A	uc003smx.2	+	4	736	c.597G>A	c.(595-597)AGG>AGA	p.R199R		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	199	Ig-like C2-type 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CGGACCAGAGGAAAACAGTTT	0.468													61	160					0	0	0.000781405	0	0
SDK1	221935	broad.mit.edu	37	7	4051792	4051792	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:4051792A>T	uc003smx.2	+	16	2484	c.2345A>T	c.(2344-2346)AAT>ATT	p.N782I	SDK1_uc010kso.2_Missense_Mutation_p.N58I	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	782	Fibronectin type-III 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GGGCGGACTAATCAGTCCATT	0.517													202	402					0	0	0.000781405	0	0
SDK1	221935	broad.mit.edu	37	7	4259903	4259903	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:4259903G>A	uc003smx.2	+	39	5840	c.5701_splice	c.e39+1	p.G1901_splice	SDK1_uc010kso.2_Splice_Site_p.G1157_splice|SDK1_uc003smy.2_Splice_Site_p.G388_splice	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor						cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCAGCCGAGGGTAAGTGGAAC	0.562													166	325					0	0	0.000781405	0	0
PAPOLB	56903	broad.mit.edu	37	7	4900186	4900186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:4900186G>A	uc003snk.2	-	1	1440	c.1256C>T	c.(1255-1257)CCA>CTA	p.P419L	RADIL_uc003sng.1_Intron|RADIL_uc011jwd.1_Intron|RADIL_uc003snj.1_Intron	NM_020144	NP_064529	Q9NRJ5	PAPOB_HUMAN	poly(A) polymerase beta (testis specific)	418					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.089)|OV - Ovarian serous cystadenocarcinoma(56;2.06e-14)		AAATGACTGTGGATTCACATG	0.403													344	601					0	0	0.000781405	0	0
SLC29A4	222962	broad.mit.edu	37	7	5338755	5338755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:5338755G>A	uc003sod.2	+	8	1180	c.1019G>A	c.(1018-1020)AGA>AAA	p.R340K	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Missense_Mutation_p.R340K|SLC29A4_uc003soe.2_Missense_Mutation_p.R326K|SLC29A4_uc010ksw.2_RNA	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	340	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		CCCACCTTCAGAGGTGAGTGC	0.721													88	131					0	0	0.000781405	0	0
C1GALT1	56913	broad.mit.edu	37	7	7278205	7278205	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:7278205G>A	uc010ktn.2	+	3	763	c.540G>A	c.(538-540)AGG>AGA	p.R180R	C1GALT1_uc003sra.2_Silent_p.R180R|C1GALT1_uc010kto.1_Silent_p.R180R	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	180	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		ACAATTTGAGGTGGCTTCTTT	0.378													59	79					0	0	0.000781405	0	0
ETV1	2115	broad.mit.edu	37	7	13971355	13971355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:13971355C>T	uc011jxq.1	-	9	1313	c.574G>A	c.(574-576)GAA>AAA	p.E192K	ETV1_uc011jxn.1_Missense_Mutation_p.E152K|ETV1_uc011jxo.1_Missense_Mutation_p.E89K|ETV1_uc011jxp.1_Missense_Mutation_p.E134K|ETV1_uc003ssw.3_Missense_Mutation_p.E192K|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.E174K|ETV1_uc011jxs.1_Missense_Mutation_p.E174K|ETV1_uc010ktv.2_Missense_Mutation_p.E61K	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	192					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						TTACAGGGTTCAGAAAGCTGG	0.468			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								42	69					0	0	0.000781405	0	0
BZW2	28969	broad.mit.edu	37	7	16725628	16725628	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:16725628C>T	uc003stl.2	+	6	682	c.504C>T	c.(502-504)ATC>ATT	p.I168I	BZW2_uc011jxx.1_Intron|BZW2_uc003stm.2_Intron|BZW2_uc003stj.2_Silent_p.I168I|BZW2_uc003stk.2_Silent_p.I92I|BZW2_uc003stn.1_Silent_p.I168I|BZW2_uc003sto.1_Silent_p.I16I|BZW2_uc003stp.2_Silent_p.I16I|BZW2_uc010kua.2_Silent_p.I168I	NM_001159767	NP_001153239	Q9Y6E2	BZW2_HUMAN	basic leucine zipper and W2 domains 2	168					cell differentiation|nervous system development|RNA metabolic process		protein binding			ovary(2)	2	Lung NSC(10;0.0367)|all_lung(11;0.0837)			UCEC - Uterine corpus endometrioid carcinoma (126;0.199)		CCGCCACCATCCTCACCAGTC	0.493													9	12					0	0	0.000673444	0	0
HDAC9	9734	broad.mit.edu	37	7	18767289	18767289	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:18767289C>T	uc003suh.2	+	12	1850	c.1809C>T	c.(1807-1809)CAC>CAT	p.H603H	HDAC9_uc003sue.2_Silent_p.H603H|HDAC9_uc011jyd.1_Silent_p.H603H|HDAC9_uc003sui.2_Silent_p.H606H|HDAC9_uc003suj.2_Silent_p.H562H|HDAC9_uc003sua.1_Silent_p.H581H|HDAC9_uc010kue.1_Silent_p.H258H	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	603					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TAGAGAAACACCGTCTCGTCT	0.587													20	26					0	0	0.00121646	0	0
DNAH11	8701	broad.mit.edu	37	7	21723441	21723441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:21723441C>T	uc003svc.2	+	33	5552	c.5521C>T	c.(5521-5523)CGT>TGT	p.R1841C		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1841	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GTCTCAACTTCGTCACCGATG	0.438									Kartagener_syndrome				96	190					0	0	0.000781405	0	0
DNAH11	8701	broad.mit.edu	37	7	21789384	21789384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:21789384G>A	uc003svc.2	+	54	8814	c.8783G>A	c.(8782-8784)AGC>AAC	p.S2928N		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2928	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTAGATGAGAGCTTCCTCGTG	0.438									Kartagener_syndrome				12	13					0	0	0.00136819	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23352044	23352044	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:23352044C>T	uc003swg.2	-	15	1943	c.1677G>A	c.(1675-1677)CAG>CAA	p.Q559Q	IGF2BP3_uc003swf.2_Silent_p.Q178Q	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	559					anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						GCTGCTTTACCTGAGTCAGAA	0.448													164	313					0	0	0.000781405	0	0
STK31	56164	broad.mit.edu	37	7	23811884	23811884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:23811884G>A	uc003sws.3	+	15	2019	c.1952G>A	c.(1951-1953)AGT>AAT	p.S651N	STK31_uc003swt.3_Missense_Mutation_p.S628N|STK31_uc011jze.1_Missense_Mutation_p.S651N|STK31_uc010kuq.2_Missense_Mutation_p.S628N	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	651							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GTTGAAAAGAGTAATTTGGAA	0.328													24	31					0	0	0.000720815	0	0
MPP6	51678	broad.mit.edu	37	7	24705247	24705247	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:24705247C>A	uc003swx.2	+	8	1123	c.824C>A	c.(823-825)CCA>CAA	p.P275Q	MPP6_uc003swy.2_Missense_Mutation_p.P275Q|MPP6_uc010kur.2_5'Flank	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	275	SH3.				protein complex assembly		protein binding				0						GGTCTCATTCCAAGCCAGTTC	0.413													13	17					3.27435e-08	2.28648e-07	0.000219431	1	0
DFNA5	1687	broad.mit.edu	37	7	24742400	24742400	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:24742400G>A	uc010kus.1	-	9	1324	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I	DFNA5_uc003swz.2_Silent_p.I248I|DFNA5_uc003sxa.1_Silent_p.I412I|DFNA5_uc010kut.1_Silent_p.I248I	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	412					sensory perception of sound					ovary(1)	1						GTGTGGGAATGATCTGGAGTT	0.507													163	253					0	0	0.000781405	0	0
HOXA2	3199	broad.mit.edu	37	7	27140431	27140431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:27140431C>T	uc003syh.2	-	2	1320	c.1045G>A	c.(1045-1047)GAC>AAC	p.D349N		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	349						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						ACGGGACTGTCGAGGGAACCT	0.463													344	553					0	0	0.000781405	0	0
LOC402644	402644	broad.mit.edu	37	7	28319051	28319052	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:28319051_28319052GG>AA	uc010kuz.1	-	1	267_268	c.267_268CC>TT	c.(265-270)ATCCTA>ATTTTA	p.89_90IL>IL		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						GTACGCTTTAGGATAAATTTCT	0.47													42	69					0	0	6.4e-05	0	0
NOD1	10392	broad.mit.edu	37	7	30492470	30492470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:30492470G>A	uc003tav.2	-	6	1086	c.563C>T	c.(562-564)ACC>ATC	p.T188I	NOD1_uc010kvs.2_Missense_Mutation_p.T188I	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	188					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						GAGGATGCCGGTGGTGTGGTC	0.607													302	414					0	0	0.000781405	0	0
PDE1C	5137	broad.mit.edu	37	7	32209401	32209401	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:32209401A>G	uc003tco.1	-	3	898	c.304T>C	c.(304-306)TTC>CTC	p.F102L		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCAAACCTGAAGGATGTCTTC	0.468													14	32					0	0	0.00074312	0	0
FKBP9	11328	broad.mit.edu	37	7	33035788	33035788	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:33035788C>A	uc003tdh.2	+	7	1234	c.1053C>A	c.(1051-1053)GGC>GGA	p.G351G	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Silent_p.G404G|FKBP9_uc011kam.1_Silent_p.G119G	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	351	PPIase FKBP-type 3.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			ATATCCCCGGCTCGGCTGTGC	0.557													6	415					0.000673444	0.0046179	0.000673444	1	0
BMPER	168667	broad.mit.edu	37	7	34118669	34118669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:34118669G>A	uc011kap.1	+	12	1393	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	427	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						GGTGCTGGGCGAGAGCAGGGT	0.687													349	486					0	0	0.000781405	0	0
AOAH	313	broad.mit.edu	37	7	36657925	36657925	+	Silent	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:36657925T>A	uc003tfh.3	-	10	1130	c.729A>T	c.(727-729)CCA>CCT	p.P243P	AOAH_uc010kxf.2_Silent_p.P243P|AOAH_uc011kba.1_Silent_p.P211P	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	243					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						TCTTCTCATATGGAACTCCAT	0.328													30	47					0	0	0.00128727	0	0
POU6F2	11281	broad.mit.edu	37	7	39379267	39379267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:39379267C>T	uc003thb.1	+	5	580	c.538C>T	c.(538-540)CAG>TAG	p.Q180*	POU6F2_uc010kxo.2_Nonsense_Mutation_p.Q172*	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	180	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CTCCCAGCTCcagcagctcca	0.423													68	118					0	0	0.000781405	0	0
CDK13	8621	broad.mit.edu	37	7	40041554	40041554	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:40041554T>C	uc003thh.3	+	5	2559	c.2277T>C	c.(2275-2277)CTT>CTC	p.L759L	CDK13_uc003thi.3_Silent_p.L759L|CDK13_uc011kbf.1_Silent_p.L145L	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	759	Protein kinase.				alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						TCCGGCAGCTTACCCATCAGA	0.343													29	73					0	0	0.000878237	0	0
OGDH	4967	broad.mit.edu	37	7	44735718	44735718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:44735718C>T	uc003tln.2	+	13	1872	c.1763C>T	c.(1762-1764)CCC>CTC	p.P588L	OGDH_uc011kbx.1_Missense_Mutation_p.P584L|OGDH_uc011kby.1_Missense_Mutation_p.P438L|OGDH_uc003tlp.2_Missense_Mutation_p.P599L|OGDH_uc011kbz.1_Missense_Mutation_p.P383L|OGDH_uc003tlo.1_Missense_Mutation_p.P421L	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	588					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CTGGACTCTCCCTGGCCTGGT	0.338													93	151					0	0	0.000781405	0	0
CCM2	83605	broad.mit.edu	37	7	45104163	45104163	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:45104163C>T	uc003tmo.2	+	4	536	c.390C>T	c.(388-390)ATC>ATT	p.I130I	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Silent_p.I72I|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Silent_p.I130I|CCM2_uc011kcb.1_Silent_p.I93I|CCM2_uc011kcc.1_Silent_p.I123I|CCM2_uc003tms.2_Silent_p.I151I	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	130	PID.				endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						GGGAGGATATCATCCTCAGGG	0.607									Familial_Cerebral_Cavernous_Angioma				66	102					0	0	0.000781405	0	0
ADCY1	107	broad.mit.edu	37	7	45750222	45750222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:45750222G>A	uc003tne.3	+	19	3046	c.3028G>A	c.(3028-3030)GAT>AAT	p.D1010N		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1010	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CAGTCGGATGGATAGCACAGG	0.473													132	203					0	0	0.000781405	0	0
IKZF1	10320	broad.mit.edu	37	7	50367321	50367321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:50367321G>A	uc003tow.3	+	4	296	c.128G>A	c.(127-129)GGA>GAA	p.G43E	IKZF1_uc003tox.3_Missense_Mutation_p.G43E|IKZF1_uc003toy.3_Missense_Mutation_p.G43E|IKZF1_uc011kck.1_Missense_Mutation_p.G43E|IKZF1_uc003toz.3_Missense_Mutation_p.G13E|IKZF1_uc010kyx.2_Missense_Mutation_p.G13E|IKZF1_uc003tov.1_Missense_Mutation_p.G43E	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	43					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(17)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				ACCTCGGGAGGACAGCAAAGC	0.547			D		ALL								29	24					0	0	0.000279167	0	0
POM121L12	285877	broad.mit.edu	37	7	53103641	53103641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:53103641G>A	uc003tpz.2	+	1	293	c.277G>A	c.(277-279)GTC>ATC	p.V93I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	93											0						GCAGCGGGTGGTCTCCGAGGG	0.697													92	152					0	0	0.000781405	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617633	54617633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:54617633G>A	uc010kzf.2	+	4	809	c.404G>A	c.(403-405)GGG>GAG	p.G135E	VSTM2A_uc010kze.2_Missense_Mutation_p.G135E|VSTM2A_uc003tqc.3_Missense_Mutation_p.G135E	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	135	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			GCCAACTACGGGGAGCTTCAG	0.522													88	117					0	0	0.000781405	0	0
KCTD7	154881	broad.mit.edu	37	7	66103255	66103255	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:66103255C>T	uc003tve.2	+	3	492	c.330C>T	c.(328-330)TTC>TTT	p.F110F	RABGEF1_uc003tvf.2_5'UTR|KCTD7_uc003tvd.3_Silent_p.F110F	NM_153033	NP_694578	Q96MP8	KCTD7_HUMAN	potassium channel tetramerisation domain	110	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)	3						TGCTGAATTTCCTGCGCTCAG	0.552													258	412					0	0	0.000781405	0	0
AUTS2	26053	broad.mit.edu	37	7	70250942	70250942	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:70250942G>A	uc003tvw.3	+	17	2969	c.2226G>A	c.(2224-2226)GAG>GAA	p.E742E	AUTS2_uc003tvx.3_Silent_p.E718E|AUTS2_uc011keg.1_Silent_p.E194E	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	742										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		TGTTTGCAGAGCCTTTTAATC	0.552													15	393					0	0	0.000308642	0	0
CALN1	83698	broad.mit.edu	37	7	71488686	71488686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:71488686G>A	uc003twa.3	-	4	858	c.331C>T	c.(331-333)CGC>TGC	p.R111C	CALN1_uc003twb.3_Missense_Mutation_p.R153C|CALN1_uc003twc.3_Missense_Mutation_p.R111C	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	111	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				AAACCATCGCGACCTTCTGAA	0.418													141	221					0	0	0.000781405	0	0
MDH2	4191	broad.mit.edu	37	7	75695601	75695601	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:75695601A>G	uc003ueo.2	+	9	976	c.890A>G	c.(889-891)AAG>AGG	p.K297R	MDH2_uc003uep.2_Missense_Mutation_p.K190R|MDH2_uc011kgh.1_Missense_Mutation_p.K255R	NM_005918	NP_005909	P40926	MDHM_HUMAN	mitochondrial malate dehydrogenase precursor	297					gluconeogenesis|malate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus|plasma membrane	binding|L-malate dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					NADH(DB00157)	CCTCAGAAAAAGGGCATCGAG	0.522													4	521					0	0	0.00024832	0	0
MAGI2	9863	broad.mit.edu	37	7	77973208	77973208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:77973208C>T	uc003ugx.2	-	9	1549	c.1295G>A	c.(1294-1296)AGC>AAC	p.S432N	MAGI2_uc003ugy.2_Missense_Mutation_p.S432N|MAGI2_uc010ldx.1_Missense_Mutation_p.S41N|MAGI2_uc010ldy.1_Missense_Mutation_p.S41N|MAGI2_uc011kgr.1_Missense_Mutation_p.S264N|MAGI2_uc011kgs.1_Missense_Mutation_p.S269N	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	432	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GCCCATGTTGCTCTTTTTTAG	0.463													28	75					0	0	0.000878237	0	0
MAGI2	9863	broad.mit.edu	37	7	78256514	78256514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:78256514C>T	uc003ugx.2	-	3	714	c.460G>A	c.(460-462)GAT>AAT	p.D154N	MAGI2_uc003ugy.2_Missense_Mutation_p.D154N|MAGI2_uc011kgr.1_5'UTR|MAGI2_uc011kgs.1_5'UTR	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	154	Guanylate kinase-like.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				AAAATATAATCCACTCCAGGG	0.393													26	66					0	0	0.000720815	0	0
PCLO	27445	broad.mit.edu	37	7	82476488	82476488	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:82476488T>A	uc003uhx.2	-	11	14019	c.13730A>T	c.(13729-13731)CAG>CTG	p.Q4577L	PCLO_uc003uhv.2_Missense_Mutation_p.Q4577L|PCLO_uc003uht.1_Missense_Mutation_p.Q28L|PCLO_uc003uhu.1_Missense_Mutation_p.S10C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4465	PDZ.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCCACTTTGCTGACTAATGAT	0.333													7	9					0	0	8.12818e-05	0	0
PCLO	27445	broad.mit.edu	37	7	82544124	82544124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:82544124C>T	uc003uhx.2	-	7	13467	c.13178G>A	c.(13177-13179)GGA>GAA	p.G4393E	PCLO_uc003uhv.2_Missense_Mutation_p.G4393E|PCLO_uc010lec.2_Missense_Mutation_p.G1358E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4324					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTGGCTTGATCCAAACTGATC	0.527													11	12					0	0	0.00136819	0	0
PCLO	27445	broad.mit.edu	37	7	82579048	82579048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:82579048G>A	uc003uhx.2	-	6	11145	c.10856C>T	c.(10855-10857)TCC>TTC	p.S3619F	PCLO_uc003uhv.2_Missense_Mutation_p.S3619F|PCLO_uc010lec.2_Missense_Mutation_p.S584F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3550					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GACTTTGGGGGATTTGGGTGG	0.483													34	69					0	0	0.00058488	0	0
PCLO	27445	broad.mit.edu	37	7	82583374	82583374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:82583374C>T	uc003uhx.2	-	5	7184	c.6895G>A	c.(6895-6897)GAC>AAC	p.D2299N	PCLO_uc003uhv.2_Missense_Mutation_p.D2299N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2230					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCACTGGGTCCTTTTCAGAT	0.408													66	86					0	0	0.000781405	0	0
PCLO	27445	broad.mit.edu	37	7	82585116	82585116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:82585116G>A	uc003uhx.2	-	5	5442	c.5153C>T	c.(5152-5154)TCG>TTG	p.S1718L	PCLO_uc003uhv.2_Missense_Mutation_p.S1718L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1649					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATGCAGACTCGAAGATCCCTC	0.458													19	29					0	0	0.00074312	0	0
PCLO	27445	broad.mit.edu	37	7	82595334	82595334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:82595334G>A	uc003uhx.2	-	4	4059	c.3770C>T	c.(3769-3771)CCA>CTA	p.P1257L	PCLO_uc003uhv.2_Missense_Mutation_p.P1257L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1196					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGTTCTTCTGGGGCTGATGT	0.408													65	85					0	0	0.000781405	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87329745	87329745	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:87329745A>G	uc003ujb.2	+	4	709	c.298A>G	c.(298-300)ACC>GCC	p.T100A	ABCB1_uc003uiz.1_Intron|ABCB1_uc003uja.1_Intron|ABCB1_uc010lei.1_Intron|RUNDC3B_uc011khd.1_Missense_Mutation_p.T83A|RUNDC3B_uc011khe.1_Missense_Mutation_p.T83A|RUNDC3B_uc003ujc.2_Missense_Mutation_p.T83A|RUNDC3B_uc003ujd.2_Missense_Mutation_p.T5A	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	100	RUN.									skin(1)	1	Esophageal squamous(14;0.00164)					AGGTCAAGTAACCTGGTTTGG	0.323													20	27					0	0	0.000958276	0	0
STEAP2	261729	broad.mit.edu	37	7	89854414	89854414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:89854414G>A	uc003ujz.2	+	2	411	c.18G>A	c.(16-18)ATG>ATA	p.M6I	STEAP2_uc003ujy.2_Missense_Mutation_p.M48I|STEAP2_uc010len.2_Missense_Mutation_p.M6I|STEAP2_uc003uka.2_Missense_Mutation_p.M6I|STEAP2_uc003ukb.2_Missense_Mutation_p.M6I|STEAP2_uc003ukc.2_Missense_Mutation_p.M6I|STEAP2_uc003ukd.2_Missense_Mutation_p.M6I	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	6					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					CAATCTCTATGATGGGAAGCC	0.393													93	169					0	0	0.000781405	0	0
GTPBP10	85865	broad.mit.edu	37	7	89982181	89982182	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:89982181_89982182GG>AA	uc003ukm.1	+	2	151_152	c.85_86GG>AA	c.(85-87)GGA>AAA	p.G29K	GTPBP10_uc003uki.1_Missense_Mutation_p.G46K|GTPBP10_uc003ukj.1_Missense_Mutation_p.G20K|GTPBP10_uc003ukk.1_RNA|GTPBP10_uc003ukl.1_RNA|GTPBP10_uc003ukn.1_Missense_Mutation_p.G29K|GTPBP10_uc003uko.1_5'UTR	NM_033107	NP_149098	A4D1E9	GTPBA_HUMAN	GTP-binding protein 10 isoform 2	29					ribosome biogenesis	chromosome|nucleolus	GTP binding|GTPase activity|magnesium ion binding				0						AGGATCCGGTGGAATGGGTTAT	0.391											OREG0003797	type=REGULATORY REGION|Gene=BC021573|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	76	148					0	0	6.4e-05	0	0
CDK14	5218	broad.mit.edu	37	7	90741984	90741984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:90741984G>A	uc003uky.2	+	13	1504	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	CDK14_uc003ukz.1_Missense_Mutation_p.E410K|CDK14_uc010les.1_Missense_Mutation_p.E382K|CDK14_uc011khl.1_Missense_Mutation_p.E299K	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	428					cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						ACGGCTATGGGAACTCACCGA	0.493													16	9					0	0	0.000422831	0	0
AKAP9	10142	broad.mit.edu	37	7	91706181	91706181	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:91706181G>T	uc003ulg.2	+	29	6850	c.6625G>T	c.(6625-6627)GAA>TAA	p.E2209*	AKAP9_uc003ulf.2_Nonsense_Mutation_p.E2201*|AKAP9_uc003uli.2_Nonsense_Mutation_p.E1832*|AKAP9_uc003ulj.2_5'UTR	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2221	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TACAAACTTAGAAGAGCAATT	0.254			T	BRAF	papillary thyroid								5	12					1.23904e-05	8.62518e-05	0.000602214	1	0
SAMD9L	219285	broad.mit.edu	37	7	92762391	92762391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:92762391C>T	uc003umh.1	-	5	4110	c.2894G>A	c.(2893-2895)GGA>GAA	p.G965E	SAMD9L_uc003umj.1_Missense_Mutation_p.G965E|SAMD9L_uc003umi.1_Missense_Mutation_p.G965E|SAMD9L_uc010lfb.1_Missense_Mutation_p.G965E|SAMD9L_uc003umk.1_Missense_Mutation_p.G965E|SAMD9L_uc010lfc.1_Missense_Mutation_p.G965E|SAMD9L_uc010lfd.1_Missense_Mutation_p.G965E|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	965										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AGAATAAGTTCCCATCTTGTC	0.383													5	20					0	0	0.000602214	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762826	92762826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:92762826G>A	uc003umh.1	-	5	3675	c.2459C>T	c.(2458-2460)TCC>TTC	p.S820F	SAMD9L_uc003umj.1_Missense_Mutation_p.S820F|SAMD9L_uc003umi.1_Missense_Mutation_p.S820F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S820F|SAMD9L_uc003umk.1_Missense_Mutation_p.S820F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S820F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S820F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	820										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGCTAAAACGGAATGGATGGC	0.378													18	35					0	0	0.000566183	0	0
CALCR	799	broad.mit.edu	37	7	93090138	93090138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:93090138C>T	uc003umv.1	-	9	1006	c.745G>A	c.(745-747)GAC>AAC	p.D249N	CALCR_uc011kia.1_Missense_Mutation_p.D29N|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.D215N|CALCR_uc003umw.2_Missense_Mutation_p.D215N	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	231	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CTTACCGGGTCCCTTCGCACG	0.383													9	15					0	0	0.000442599	0	0
CALCR	799	broad.mit.edu	37	7	93090202	93090202	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:93090202C>T	uc003umv.1	-	9	942	c.681G>A	c.(679-681)CTG>CTA	p.L227L	CALCR_uc011kia.1_Silent_p.L7L|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.L193L|CALCR_uc003umw.2_Silent_p.L193L	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	209	Helical; Name=2; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TCATAGAATTCAGAATGTAAG	0.413													17	21					0	0	0.000566183	0	0
PON1	5444	broad.mit.edu	37	7	94928408	94928408	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:94928408G>A	uc003uns.2	-	9	1013	c.916C>T	c.(916-918)CGA>TGA	p.R306*	PON1_uc011kih.1_Nonsense_Mutation_p.R306*	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	306					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	TTCTGGATTCGAAGCACCTGT	0.383													52	51					0	0	0.000781405	0	0
PON1	5444	broad.mit.edu	37	7	95025659	95025660	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:95025659_95025660CC>AA	uc011kih.1	-	1	28_29	c.3_4GG>TT	c.(1-6)ATGGGG>ATTTGG	p.1_2MG>IW	PON3_uc003unt.2_Missense_Mutation_p.1_2MG>IW|PON3_uc011kii.1_Missense_Mutation_p.1_2MG>IW			P27169	PON1_HUMAN	SubName: Full=cDNA FLJ57644, highly similar to Serum paraoxonase/arylesterase 1 (EC 3.1.1.2);	1_2					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	ACGAGCTTCCCCATGGTCTCGG	0.703													11	657					0	0	6.4e-05	0	0
LMTK2	22853	broad.mit.edu	37	7	97821333	97821334	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:97821333_97821334CC>TT	uc003upd.1	+	11	1849_1850	c.1556_1557CC>TT	c.(1555-1557)CCC>CTT	p.P519L		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	519					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GATCCTGGGCCCGGAAAGCAAG	0.54													157	292					0	0	6.4e-05	0	0
SMURF1	57154	broad.mit.edu	37	7	98643359	98643359	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:98643359G>A	uc003upu.1	-	12	1616	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F	SMURF1_uc003upv.1_Silent_p.F406F|SMURF1_uc003upt.2_Silent_p.F406F	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	432	HECT.				BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			CTTCCCCACGGAATTTCACCA	0.468													167	331					0	0	0.000781405	0	0
PCOLCE	5118	broad.mit.edu	37	7	100205613	100205614	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:100205613_100205614CC>TT	uc003uvo.2	+	9	1435_1436	c.1237_1238CC>TT	c.(1237-1239)CCT>TTT	p.P413F	PCOLCE_uc010lhb.1_RNA|PCOLCE_uc003uvp.1_RNA	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	413	NTR.				multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CCCCGTCCTTCCTCCAGAGAGC	0.564													248	476					0	0	6.4e-05	0	0
TFR2	7036	broad.mit.edu	37	7	100218512	100218512	+	Missense_Mutation	SNP	C	G	G	rs80338891		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:100218512C>G	uc003uvv.1	-	18	2415	c.2374G>C	c.(2374-2376)GGG>CGG	p.G792R	TFR2_uc010lhc.1_Missense_Mutation_p.G333R|TFR2_uc003uvu.1_Missense_Mutation_p.G621R	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	792	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CAGACATCCCCGCTAAGCGCA	0.612													4	471					0	0	0.00024832	0	0
MUC17	140453	broad.mit.edu	37	7	100676654	100676654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:100676654C>T	uc003uxp.1	+	3	2010	c.1957C>T	c.(1957-1959)CCT>TCT	p.P653S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	653	Extracellular (Potential).|8.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTCAACAACTCCTGTTGACTC	0.483													329	592					0	0	0.000781405	0	0
EMID2	136227	broad.mit.edu	37	7	101183202	101183202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:101183202C>T	uc010lhy.1	+	5	662	c.470C>T	c.(469-471)CCC>CTC	p.P157L	EMID2_uc003uyo.1_Missense_Mutation_p.P159L	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	159						collagen				ovary(1)	1	Lung NSC(181;0.215)					GCAGAACGGCCCTCCAGCCCG	0.627													81	179					0	0	0.000781405	0	0
CUX1	1523	broad.mit.edu	37	7	101918603	101918603	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:101918603C>T	uc003uyt.2	+	17	1555	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	CUX1_uc011kkn.1_Silent_p.F473F|CUX1_uc003uyw.2_Silent_p.F466F|CUX1_uc003uyv.2_Silent_p.F496F|CUX1_uc003uyu.2_Silent_p.F510F|CUX1_uc003uyz.2_RNA	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GGGAGCGCTTCCGTGCCCGGA	0.612													190	287					0	0	0.000781405	0	0
LRRC17	10234	broad.mit.edu	37	7	102584657	102584657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:102584657C>T	uc003vau.2	+	4	1318	c.929C>T	c.(928-930)GCC>GTC	p.A310V	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_3'UTR	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	310	LRR 5.				bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						CTGTTTCCAGCCGCTTTTTTA	0.269													42	103					0	0	0.000680045	0	0
RELN	5649	broad.mit.edu	37	7	103126851	103126851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:103126851G>A	uc003vca.2	-	61	9936	c.9776C>T	c.(9775-9777)TCT>TTT	p.S3259F	RELN_uc010liz.2_Missense_Mutation_p.S3259F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3259	EGF-like 8.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACTGAAAACAGAGCAGTCATC	0.423													20	31					0	0	0.000175454	0	0
RELN	5649	broad.mit.edu	37	7	103159888	103159888	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:103159888C>G	uc003vca.2	-	49	7904	c.7744G>C	c.(7744-7746)GGG>CGG	p.G2582R	RELN_uc010liz.2_Missense_Mutation_p.G2582R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2582					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATCAGGCACCCATACATGAAG	0.378													4	259					0	0	0.00024832	0	0
HBP1	26959	broad.mit.edu	37	7	106836293	106836293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:106836293C>T	uc003vdy.2	+	9	1268	c.1082C>T	c.(1081-1083)CCT>CTT	p.P361L	HBP1_uc011klv.1_Missense_Mutation_p.P371L|HBP1_uc003vdz.2_Missense_Mutation_p.P361L|HBP1_uc003vea.2_Missense_Mutation_p.P361L|HBP1_uc003veb.1_Missense_Mutation_p.P361L	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	361					cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						GACTTCACACCTATGGATTCT	0.323													27	51					0	0	0.00127121	0	0
DNAJB9	4189	broad.mit.edu	37	7	108213754	108213754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:108213754G>A	uc003vfn.2	+	3	831	c.629G>A	c.(628-630)AGA>AAA	p.R210K		NM_012328	NP_036460	Q9UBS3	DNJB9_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 9	210					ER-associated protein catabolic process|protein folding	endoplasmic reticulum|nucleolus	heat shock protein binding|misfolded protein binding|unfolded protein binding				0						ACTCAACGAAGAGGAAATATG	0.378													180	335					0	0	0.000781405	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518303	113518303	+	Silent	SNP	C	T	T	rs150965727		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:113518303C>T	uc010ljy.1	-	4	2875	c.2844G>A	c.(2842-2844)ACG>ACA	p.T948T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	948					glycogen metabolic process	integral to membrane		p.T948T(3)		lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTCTGATTTCGTAGAAATAG	0.378													22	33					0	0	0.000175454	0	0
TFEC	22797	broad.mit.edu	37	7	115580925	115580925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:115580925C>T	uc003vhj.1	-	8	908	c.724G>A	c.(724-726)GAT>AAT	p.D242N	TFEC_uc003vhk.1_Missense_Mutation_p.D213N|TFEC_uc003vhl.3_3'UTR|TFEC_uc011kmw.1_3'UTR	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	242						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			GCACCTAAATCAACCGTGCCA	0.453													68	104					0	0	0.000781405	0	0
KCND2	3751	broad.mit.edu	37	7	119915161	119915161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:119915161G>A	uc003vjj.1	+	1	1440	c.475G>A	c.(475-477)GAG>AAG	p.E159K		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	159	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CACCGCTGGGGAGAGCGCCTT	0.627													190	352					0	0	0.000781405	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651045	121651045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:121651045G>A	uc003vjy.2	+	12	2340	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K	PTPRZ1_uc003vjz.2_Missense_Mutation_p.E649K|PTPRZ1_uc011knt.1_Missense_Mutation_p.E99K	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	649	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TCCTTCTATGGAGGGAAATGT	0.423													11	32					0	0	0.000978159	0	0
FSCN3	29999	broad.mit.edu	37	7	127235623	127235623	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:127235623G>A	uc003vmd.1	+	2	626	c.407G>A	c.(406-408)TGG>TAG	p.W136*	FSCN3_uc003vmc.1_Nonsense_Mutation_p.W91*|FSCN3_uc011kog.1_RNA|FSCN3_uc011koh.1_Nonsense_Mutation_p.W2*|FSCN3_uc010llc.1_Nonsense_Mutation_p.W136*	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	136						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						TACCACATGTGGACCCCCCGA	0.592													138	216					0	0	0.000781405	0	0
METTL2B	55798	broad.mit.edu	37	7	128141846	128141846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:128141846G>A	uc003vnf.2	+	9	1050	c.1013G>A	c.(1012-1014)GGA>GAA	p.G338E	METTL2B_uc003vng.2_Missense_Mutation_p.G273E|METTL2B_uc011kop.1_Missense_Mutation_p.G202E	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	338							methyltransferase activity			skin(1)	1						ACCACTGCTGGACTGGAAAAA	0.448													121	204					0	0	0.000781405	0	0
PLXNA4	91584	broad.mit.edu	37	7	131910981	131910981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:131910981C>T	uc003vra.3	-	8	2150	c.1921G>A	c.(1921-1923)GAG>AAG	p.E641K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	641	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						ATGCCGGTCTCCTTTGATTTG	0.567													100	207					0	0	0.000781405	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192577	132192577	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:132192577G>A	uc003vra.3	-	2	1105	c.876C>T	c.(874-876)TCC>TCT	p.S292S	PLXNA4_uc003vrc.2_Silent_p.S292S|PLXNA4_uc003vrb.2_Silent_p.S292S	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	292	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCTCTACATAGGAGTTGAAGG	0.602													29	64					0	0	0.00106085	0	0
STRA8	346673	broad.mit.edu	37	7	134916779	134916779	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:134916779A>G	uc011kpx.1	+	1	49	c.49A>G	c.(49-51)AGG>GGG	p.R17G		NM_182489	NP_872295	Q7Z7C7	STRA8_HUMAN	STRA8	17					DNA replication|regulation of transcription, DNA-dependent	cytoplasm|nucleus					0						TCAAGAAATCAGGCTGTGGCA	0.512													5	704					0	0	0.00116845	0	0
DGKI	9162	broad.mit.edu	37	7	137080407	137080407	+	Silent	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:137080407C>A	uc003vtt.2	-	33	3019	c.3018G>T	c.(3016-3018)CGG>CGT	p.R1006R	DGKI_uc003vtu.2_Silent_p.R675R	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	1006	ANK 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CAGCCCGGTTCCGCTGGCAGG	0.557													28	39					4.34311e-12	3.03959e-11	0.00058488	1	0
KIAA1549	57670	broad.mit.edu	37	7	138601935	138601935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:138601935C>T	uc011kql.1	-	2	2486	c.2437G>A	c.(2437-2439)GAC>AAC	p.D813N	KIAA1549_uc003vuk.3_Missense_Mutation_p.D763N|KIAA1549_uc011kqj.1_Missense_Mutation_p.D813N	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	813						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTGATTTGGTCGTCAGGAGGT	0.507			O	BRAF	pilocytic astrocytoma								28	81					0	0	0.00127121	0	0
KIAA1549	57670	broad.mit.edu	37	7	138604145	138604145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:138604145G>A	uc011kql.1	-	2	276	c.227C>T	c.(226-228)TCC>TTC	p.S76F	KIAA1549_uc003vuk.3_Missense_Mutation_p.S26F|KIAA1549_uc011kqj.1_Missense_Mutation_p.S76F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	76						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GAGCTCCATGGAGTATAAAGA	0.502			O	BRAF	pilocytic astrocytoma								89	187					0	0	0.000781405	0	0
DENND2A	27147	broad.mit.edu	37	7	140273649	140273649	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:140273649C>A	uc010lnj.2	-	4	1550	c.1405G>T	c.(1405-1407)GGA>TGA	p.G469*	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Nonsense_Mutation_p.G469*|DENND2A_uc003vvw.2_Nonsense_Mutation_p.G469*|DENND2A_uc003vvx.2_Nonsense_Mutation_p.G469*	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	469										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TGTGGGTCTCCAAGGTTAAAG	0.517													11	556					0.00136819	0.0093286	0.00136819	1	0
TAS2R5	54429	broad.mit.edu	37	7	141490491	141490491	+	Silent	SNP	C	T	T	rs150352868		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:141490491C>T	uc003vwr.1	+	1	475	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	110	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					TCACGACCTTCGATCGCCCGG	0.488													61	261					0	0	0.000781405	0	0
MGAM	8972	broad.mit.edu	37	7	141759749	141759749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:141759749G>A	uc003vwy.2	+	33	4096	c.4042G>A	c.(4042-4044)GAC>AAC	p.D1348N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1348	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AAATGATGGAGACATTGTCTG	0.517													6	6					0	0	0.00116845	0	0
TRY6	154754	broad.mit.edu	37	7	142481888	142481888	+	Silent	SNP	T	C	C	rs138077672	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:142481888T>C	uc011ksq.1	+	4	650	c.567T>C	c.(565-567)CTT>CTC	p.L189L	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TGGGCTTCCTTGAGGGAGGCA	0.522													4	46					0	0	0.000157383	0	0
TRPV5	56302	broad.mit.edu	37	7	142622658	142622658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:142622658C>T	uc003wby.1	-	8	1352	c.1088G>A	c.(1087-1089)CGA>CAA	p.R363Q	TRPV5_uc003wbz.2_Missense_Mutation_p.R363Q	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	363	Extracellular (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GGTGATGTCTCGAGAATGAGT	0.522													44	92					0	0	0.000781405	0	0
OR6V1	346517	broad.mit.edu	37	7	142749774	142749774	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:142749774C>T	uc011ksv.1	+	1	337	c.337C>T	c.(337-339)CTG>TTG	p.L113L		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CTTCCTCATCCTGACAGACAT	0.577													41	89					0	0	0.00148497	0	0
CLCN1	1180	broad.mit.edu	37	7	143047569	143047569	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:143047569G>A	uc003wcr.1	+	21	2595	c.2508G>A	c.(2506-2508)AAG>AAA	p.K836K	CLCN1_uc011ktc.1_Silent_p.K448K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	836	CBS 2.|Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CCCTGCACAAGGTGAGTCTTT	0.567													166	295					0	0	0.000781405	0	0
CLCN1	1180	broad.mit.edu	37	7	143048977	143048977	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:143048977G>A	uc003wcr.1	+	23	2973	c.2886G>A	c.(2884-2886)CTG>CTA	p.L962L	CLCN1_uc011ktc.1_Silent_p.L574L	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	962	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GTCCAGGGCTGGAAGAGGAGC	0.642													302	450					0	0	0.000781405	0	0
FAM131B	9715	broad.mit.edu	37	7	143053858	143053858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:143053858C>T	uc003wct.2	-	6	2490	c.784G>A	c.(784-786)GGG>AGG	p.G262R	FAM131B_uc010loz.2_Missense_Mutation_p.G230R|FAM131B_uc003wcu.3_Missense_Mutation_p.G262R|FAM131B_uc010lpa.2_Missense_Mutation_p.G290R	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	262											0	Melanoma(164;0.205)					GCGCCTACCCCCGGAGCCCAG	0.622													361	547					0	0	0.000781405	0	0
OR2A2	442361	broad.mit.edu	37	7	143807483	143807483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:143807483G>A	uc011ktz.1	+	1	808	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					AGAGGAGCAGGAGAAAATGCT	0.517													28	50					0	0	0.000279167	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146741113	146741113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:146741113G>A	uc003weu.1	+	4	1033	c.517G>A	c.(517-519)GGA>AGA	p.G173R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	173	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGTCGCATTGGACTCAGAAT	0.403										HNSCC(39;0.1)			45	84					0	0	0.000781405	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147914405	147914405	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:147914405G>A	uc003weu.1	+	19	3552	c.3036G>A	c.(3034-3036)GGG>GGA	p.G1012G		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1012	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TTGAAGAAGGGATGTGGCTAC	0.488										HNSCC(39;0.1)			44	90					0	0	0.000437636	0	0
CUL1	8454	broad.mit.edu	37	7	148484200	148484200	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:148484200C>T	uc010lpg.2	+	13	1993	c.1467C>T	c.(1465-1467)ATC>ATT	p.I489I	CUL1_uc003wey.2_Silent_p.I489I|CUL1_uc003wez.2_Silent_p.I379I|CUL1_uc003wfa.2_Silent_p.I150I	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	489					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			CCAGCATGATCTCCAAGTTAA	0.373													217	377					0	0	0.000781405	0	0
SSPO	23145	broad.mit.edu	37	7	149477368	149477368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:149477368C>T	uc010lpk.2	+	12	1439	c.1439C>T	c.(1438-1440)TCC>TTC	p.S480F	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	480	TIL 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GACTGCGTCTCCCTCTGCCCA	0.672													42	61					0	0	0.000374591	0	0
SSPO	23145	broad.mit.edu	37	7	149492394	149492394	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:149492394C>T	uc010lpk.2	+	43	6283	c.6283C>T	c.(6283-6285)CTG>TTG	p.L2095L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2095	F5/8 type C.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCTGCCCTCCTGGGGGCTCC	0.677													177	291					0	0	0.000781405	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171298	150171298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:150171298G>A	uc003whj.2	+	4	1211	c.881G>A	c.(880-882)AGA>AAA	p.R294K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	294						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		AGAAGCTGGAGAAAAAAGAAA	0.468													57	102					0	0	0.000781405	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217434	150217434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:150217434G>A	uc003whk.2	+	2	502	c.372G>A	c.(370-372)ATG>ATA	p.M124I		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	124							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGTCAGCCATGAAGCACATGG	0.517													137	230					0	0	0.000781405	0	0
ABP1	26	broad.mit.edu	37	7	150554300	150554300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:150554300G>A	uc003why.1	+	3	4960	c.742G>A	c.(742-744)GAA>AAA	p.E248K	ABP1_uc003whz.1_Missense_Mutation_p.E248K|ABP1_uc003wia.1_Missense_Mutation_p.E248K	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	248					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	GAGCCCAGAGGAACTGGCTCG	0.637													200	359					0	0	0.000781405	0	0
AGAP3	116988	broad.mit.edu	37	7	150814517	150814517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:150814517G>A	uc003wjg.1	+	4	541	c.538G>A	c.(538-540)GAT>AAT	p.D180N	AGAP3_uc003wje.1_5'UTR|AGAP3_uc003wjf.1_Missense_Mutation_p.D180N|AGAP3_uc010lpy.1_Missense_Mutation_p.D180N|AGAP3_uc003wjh.1_Missense_Mutation_p.D360N	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	144	Small GTPase-like.|GTP (Potential).				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GCTGATCCGAGATGAAGGAGG	0.607													328	587					0	0	0.000781405	0	0
MLL3	58508	broad.mit.edu	37	7	151859582	151859582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:151859582G>A	uc003wla.2	-	43	11299	c.11080C>T	c.(11080-11082)CCA>TCA	p.P3694S	MLL3_uc003wkz.2_Missense_Mutation_p.P2755S|MLL3_uc003wky.2_Missense_Mutation_p.P1203S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3694					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGTTGATTTGGAGTTGCTTGT	0.463			N		medulloblastoma								320	526					0	0	0.000781405	0	0
MLL3	58508	broad.mit.edu	37	7	151962153	151962153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:151962153C>T	uc003wla.2	-	8	1373	c.1154G>A	c.(1153-1155)TGT>TAT	p.C385Y		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	385	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCACTCAGGACATTGCCAACC	0.423			N		medulloblastoma								14	214					0	0	0.000295444	0	0
HTR5A	3361	broad.mit.edu	37	7	154863154	154863154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:154863154G>A	uc003wlu.1	+	1	609	c.545G>A	c.(544-546)GGA>GAA	p.G182E	uc011kvt.1_5'UTR|uc003wlt.2_5'UTR	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	182	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		TTTGGCTGGGGAGAGACGTAC	0.632													147	247					0	0	0.000781405	0	0
CSMD1	64478	broad.mit.edu	37	8	3008941	3008941	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:3008941C>T	uc011kwk.1	-	40	6402	c.6012G>A	c.(6010-6012)AGG>AGA	p.R2004R	CSMD1_uc011kwj.1_Silent_p.R1396R|CSMD1_uc003wqe.2_Silent_p.R1160R|CSMD1_uc010lrg.2_Silent_p.R72R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2004	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTAATGAGATCCTCCAGGTGC	0.448													17	26					0	0	0.000958276	0	0
CSMD1	64478	broad.mit.edu	37	8	3047537	3047537	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:3047537G>A	uc011kwk.1	-	34	5688	c.5298C>T	c.(5296-5298)TTC>TTT	p.F1766F	CSMD1_uc011kwj.1_Silent_p.F1158F|CSMD1_uc003wqe.2_Silent_p.F922F|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1766	Sushi 10.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGTTGCACTCGAATCGGACGA	0.597													10	26					0	0	0.000673444	0	0
XKR5	389610	broad.mit.edu	37	8	6690347	6690347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:6690347G>A	uc003wqp.2	-	2	156	c.134C>T	c.(133-135)CCC>CTC	p.P45L	XKR5_uc003wqq.2_5'UTR|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	45	Helical; (Potential).					integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		CAAGAACCCGGGCAGGAGGAC	0.602													175	299					0	0	0.000781405	0	0
USP17L2	377630	broad.mit.edu	37	8	11995223	11995223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:11995223C>T	uc003wvc.1	-	1	1047	c.1047G>A	c.(1045-1047)ATG>ATA	p.M349I	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	349					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TGGCATCATCCATTTTATACC	0.478													31	10					0	0	0.000279167	0	0
USP17L2	377630	broad.mit.edu	37	8	11995798	11995798	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:11995798G>A	uc003wvc.1	-	1	472	c.472C>T	c.(472-474)CAG>TAG	p.Q158*	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	158					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GCATCTTCCTGCTTGCCTCTA	0.527													4	36					0	0	0.00024832	0	0
DLC1	10395	broad.mit.edu	37	8	13162805	13162805	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:13162805G>A	uc003wwm.2	-	5	1765	c.1321C>T	c.(1321-1323)CAA>TAA	p.Q441*	DLC1_uc003wwn.2_Nonsense_Mutation_p.Q441*|DLC1_uc011kxy.1_Nonsense_Mutation_p.Q441*	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	441					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GAAATACCTTGAATAGCCTGA	0.303													64	105					0	0	0.000781405	0	0
TUSC3	7991	broad.mit.edu	37	8	15517093	15517093	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:15517093C>T	uc003wwt.2	+	4	714	c.504C>T	c.(502-504)CTC>CTT	p.L168L	TUSC3_uc003wwr.2_Silent_p.L168L|TUSC3_uc003wws.2_Silent_p.L168L|TUSC3_uc003wwu.2_Silent_p.L168L|TUSC3_uc003wwv.2_Silent_p.L168L|TUSC3_uc003www.2_Silent_p.L168L|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Silent_p.L168L	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	168					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		CTTTTGACCTCCAAAGAATTG	0.383													35	73					0	0	0.000409698	0	0
VPS37A	137492	broad.mit.edu	37	8	17132465	17132466	+	Missense_Mutation	DNP	CC	TT	TT	rs145870117		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:17132465_17132466CC>TT	uc003wxj.2	+	5	993_994	c.640_641CC>TT	c.(640-642)CCG>TTG	p.P214L	VPS37A_uc003wxk.2_Missense_Mutation_p.P189L|VPS37A_uc003wxl.2_5'UTR	NM_152415	NP_689628	Q8NEZ2	VP37A_HUMAN	hepatocellular carcinoma related protein 1	214					cellular membrane organization|endosome transport|protein transport	centrosome|late endosome membrane|nucleus					0				Colorectal(111;0.0553)|COAD - Colon adenocarcinoma(73;0.212)		TGCTTCAATACCGGTTGGTATC	0.317													62	117					0	0	6.4e-05	0	0
PSD3	23362	broad.mit.edu	37	8	18730199	18730199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:18730199C>T	uc003wza.2	-	3	278	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	59					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		TCTGGAAATTCATTTGTGACA	0.483													17	34					0	0	0.00074312	0	0
FAM160B2	64760	broad.mit.edu	37	8	21958469	21958469	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:21958469C>T	uc011kyx.1	+	12	1653	c.1602C>T	c.(1600-1602)ACC>ACT	p.T534T	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	534											0						CAGCAGTGACCGAGATCGTCA	0.408													138	250					0	0	0.000781405	0	0
MIR320A	407037	broad.mit.edu	37	8	22102546	22102546	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:22102546G>A	hsa-mir-320a|MI0000542	-			c.11G>A			uc011kzd.1_RNA|POLR3D_uc003xbl.2_5'Flank|POLR3D_uc003xbm.2_5'Flank|POLR3D_uc011kze.1_5'Flank																	0						GAAGGCGGAGGGGAGCGAAGC	0.652													250	436					0	0	0.000781405	0	0
PDLIM2	64236	broad.mit.edu	37	8	22451334	22451335	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:22451334_22451335GG>AA	uc003xby.2	+	10	1370_1371	c.970_971GG>AA	c.(970-972)GGG>AAG	p.G324K	PDLIM2_uc003xbz.2_Missense_Mutation_p.G324K|PDLIM2_uc003xca.2_3'UTR|PDLIM2_uc003xcb.2_Missense_Mutation_p.G324K|PDLIM2_uc003xcc.1_Missense_Mutation_p.G324K|PDLIM2_uc003xcd.1_3'UTR	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	324	LIM zinc-binding.					actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		GAAGATGCGCGGGCACTTCTGG	0.673													38	97					0	0	6.4e-05	0	0
LOXL2	4017	broad.mit.edu	37	8	23167372	23167372	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:23167372C>T	uc003xdh.1	-	10	2028	c.1689G>A	c.(1687-1689)CTG>CTA	p.L563L	LOXL2_uc010lty.1_Silent_p.L102L	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	563	Lysyl-oxidase like.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		GCCGGTCCTCCAGGTAGGTGG	0.662													210	385					0	0	0.000781405	0	0
ADAM28	10863	broad.mit.edu	37	8	24193057	24193057	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:24193057C>T	uc003xdy.2	+	14	1553	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	ADAM28_uc003xdx.2_Silent_p.F490F|ADAM28_uc011kzz.1_Silent_p.F257F|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.F177F	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	490	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATGATAGATTCCAAGTCAATG	0.512													11	24					0	0	0.000151284	0	0
ADAM28	10863	broad.mit.edu	37	8	24193090	24193090	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:24193090G>A	uc003xdy.2	+	14	1586	c.1503G>A	c.(1501-1503)AAG>AAA	p.K501K	ADAM28_uc003xdx.2_Silent_p.K501K|ADAM28_uc011kzz.1_Silent_p.K268K|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.K188K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	501	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATCACGGGAAGGGCCACTGCT	0.522													9	16					0	0	0.000274275	0	0
MIR548H-4	100302244	broad.mit.edu	37	8	26906400	26906400	+	RNA	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:26906400T>C	hsa-mir-548h-4|MI0006414	-			c.81T>C																				0						caaaagtaattgcggtttttg	0.149													3	16					0	0	0.00024832	0	0
EPHX2	2053	broad.mit.edu	37	8	27358512	27358512	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:27358512G>A	uc003xfu.2	+	2	252	c.171G>A	c.(169-171)GAG>GAA	p.E57E	EPHX2_uc010lut.1_Silent_p.E57E|EPHX2_uc010luu.2_Silent_p.E57E|EPHX2_uc010luv.2_5'UTR|EPHX2_uc003xfv.2_Silent_p.E4E|EPHX2_uc010luw.2_Intron	NM_001979	NP_001970	P34913	HYES_HUMAN	epoxide hydrolase 2, cytoplasmic	57	Phosphatase.				aromatic compound catabolic process|cellular calcium ion homeostasis|drug metabolic process|inflammatory response|positive regulation of vasodilation|reactive oxygen species metabolic process|regulation of blood pressure|response to toxin|xenobiotic metabolic process	cytosol|focal adhesion|Golgi apparatus|nucleolus|peroxisome|soluble fraction	epoxide hydrolase activity|metal ion binding|protein homodimerization activity			ovary(1)	1		Ovarian(32;2.61e-05)|all_epithelial(46;0.207)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0226)|Epithelial(17;1.12e-09)|Colorectal(74;0.157)	Tamoxifen(DB00675)	TGAAAGGAGAGATCACACTTT	0.522													116	201					0	0	0.000781405	0	0
HMBOX1	79618	broad.mit.edu	37	8	28827942	28827942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:28827942C>T	uc003xhd.3	+	3	748	c.406C>T	c.(406-408)CGC>TGC	p.R136C	HMBOX1_uc010lvd.2_Missense_Mutation_p.R136C|HMBOX1_uc003xhc.3_Missense_Mutation_p.R136C|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Missense_Mutation_p.R136C|HMBOX1_uc011lay.1_Missense_Mutation_p.R136C|HMBOX1_uc003xhf.2_Missense_Mutation_p.R124C|HMBOX1_uc003xhg.2_Missense_Mutation_p.R124C	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	136					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		GTCACCAACTCGCTACCATGC	0.423													44	59					0	0	0.000437636	0	0
FGFR1	2260	broad.mit.edu	37	8	38282210	38282210	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:38282210G>A	uc003xlp.2	-	7	1695	c.753C>T	c.(751-753)TCC>TCT	p.S251S	FGFR1_uc011lbo.1_Silent_p.S249S|FGFR1_uc011lbp.1_Silent_p.S162S|FGFR1_uc011lbq.1_Silent_p.S160S|FGFR1_uc010lwk.2_Silent_p.S243S|FGFR1_uc011lbr.1_RNA|FGFR1_uc011lbs.1_Silent_p.S91S|FGFR1_uc011lbt.1_Silent_p.S160S|FGFR1_uc011lbu.1_Silent_p.S282S|FGFR1_uc011lbv.1_Silent_p.S249S|FGFR1_uc011lbw.1_Silent_p.S162S|FGFR1_uc011lbx.1_Silent_p.S162S|FGFR1_uc003xlv.2_Silent_p.S162S|FGFR1_uc003xlu.2_Silent_p.S160S	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	251	Extracellular (Potential).				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	GCCGGTGAGGGGACCGCTCTG	0.607		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						186	305					0	0	0.000781405	0	0
ADAM18	8749	broad.mit.edu	37	8	39495136	39495136	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:39495136G>A	uc003xni.2	+	9	741	c.741G>A	c.(739-741)GGG>GGA	p.G247G	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.G223G	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	247	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CCACCAGTGGGGATGCTGATG	0.378													10	17					0	0	0.000442599	0	0
ANK1	286	broad.mit.edu	37	8	41581085	41581085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:41581085C>T	uc003xok.2	-	8	862	c.778G>A	c.(778-780)GAT>AAT	p.D260N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.D260N|ANK1_uc003xoj.2_Missense_Mutation_p.D260N|ANK1_uc003xol.2_Missense_Mutation_p.D260N|ANK1_uc003xom.2_Missense_Mutation_p.D293N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	260	ANK 7.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCTCCCCGATCCAGCAGCAGC	0.652													250	497					0	0	0.000781405	0	0
PLAT	5327	broad.mit.edu	37	8	42037570	42037570	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:42037570T>C	uc003xos.2	-	12	1446	c.1237A>G	c.(1237-1239)AAA>GAA	p.K413E	PLAT_uc010lxf.1_Missense_Mutation_p.K330E|PLAT_uc010lxg.1_Missense_Mutation_p.K238E|PLAT_uc003xot.2_Missense_Mutation_p.K367E|PLAT_uc011lcm.1_Missense_Mutation_p.K324E|PLAT_uc011lcn.1_Missense_Mutation_p.K287E	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	413	Peptidase S1.				blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GAATCCGATTTCAGCTGCAGC	0.692													65	105					0	0	0.000781405	0	0
CHRNA6	8973	broad.mit.edu	37	8	42623495	42623495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:42623495C>T	uc003xpj.2	-	1	125	c.79G>A	c.(79-81)GGC>AGC	p.G27S	CHRNA6_uc011lcw.1_Missense_Mutation_p.G27S	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	27	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TGAAACCTACCTTTAAAGAAA	0.398													79	116					0	0	0.000781405	0	0
KIAA0146	23514	broad.mit.edu	37	8	48508560	48508560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:48508560G>A	uc003xqd.2	+	9	1294	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K	KIAA0146_uc011lcz.1_RNA|KIAA0146_uc011lda.1_Missense_Mutation_p.E118K|KIAA0146_uc011ldb.1_Missense_Mutation_p.E429K|KIAA0146_uc010lxs.2_Intron|KIAA0146_uc011ldc.1_Missense_Mutation_p.E359K|KIAA0146_uc011ldd.1_Missense_Mutation_p.E369K|KIAA0146_uc003xqe.2_5'UTR|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Missense_Mutation_p.E118K|KIAA0146_uc010lxt.2_Missense_Mutation_p.E118K	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	429											0		Lung NSC(58;0.175)				TAATTCACCTGAAATCCAGGT	0.393													13	25					0	0	0.00136819	0	0
RP1	6101	broad.mit.edu	37	8	55538048	55538048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:55538048G>A	uc003xsd.1	+	4	1754	c.1606G>A	c.(1606-1608)GAA>AAA	p.E536K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	536					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGAAAAAAGGAAAACAGTCT	0.338													86	136					0	0	0.000781405	0	0
XKR4	114786	broad.mit.edu	37	8	56436754	56436754	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:56436754C>T	uc003xsf.2	+	3	1953	c.1921C>T	c.(1921-1923)CAG>TAG	p.Q641*		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	641						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TGCCCTTATTCAGGAGCGGTT	0.483													82	134					0	0	0.000781405	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228735	57228735	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:57228735A>G	uc003xsy.1	-	2	810	c.172T>C	c.(172-174)TTG>CTG	p.L58L	SDR16C5_uc010lyk.1_Silent_p.L58L|SDR16C5_uc010lyl.1_Silent_p.L58L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	58	NAD or NADP (By similarity).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCAAACTGCAAGGCTAAGAGC	0.507													174	266					0	0	0.000781405	0	0
IMPAD1	54928	broad.mit.edu	37	8	57890662	57890662	+	Missense_Mutation	SNP	A	T	T	rs76062026		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:57890662A>T	uc003xte.3	-	3	876	c.593T>A	c.(592-594)GTA>GAA	p.V198E		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	198						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				TTTACCATTTACAGCCACACA	0.333													122	234					0	0	0.000781405	0	0
NSMAF	8439	broad.mit.edu	37	8	59499059	59499059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:59499059G>A	uc003xtt.2	-	28	2618	c.2404C>T	c.(2404-2406)CCA>TCA	p.P802S	NSMAF_uc011lee.1_Missense_Mutation_p.P833S	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	802					ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				GAATGGCATGGAATCTGGTGC	0.388													56	84					0	0	0.000781405	0	0
TOX	9760	broad.mit.edu	37	8	59764150	59764150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:59764150C>T	uc003xtw.1	-	4	847	c.626G>A	c.(625-627)GGA>GAA	p.G209E		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	209						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				AGACTTGCTTCCAGGTGGAGA	0.458													9	27					0	0	0.00136819	0	0
CHD7	55636	broad.mit.edu	37	8	61654794	61654794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:61654794C>T	uc003xue.2	+	2	1280	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	268					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CATGGAGAATCCGTTGCCCAC	0.582													395	531					0	0	0.000781405	0	0
MYBL1	4603	broad.mit.edu	37	8	67511375	67511375	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:67511375A>T	uc003xwj.2	-	4	608	c.201T>A	c.(199-201)AAT>AAA	p.N67K	MYBL1_uc003xwl.2_Missense_Mutation_p.N67K|MYBL1_uc003xwk.2_Missense_Mutation_p.N67K	NM_001080416	NP_001073885	P10243	MYBA_HUMAN	v-myb myeloblastosis viral oncogene homolog	67	H-T-H motif (By similarity).|HTH myb-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)	3			Epithelial(68;0.00211)|all cancers(69;0.00726)|OV - Ovarian serous cystadenocarcinoma(28;0.00989)|BRCA - Breast invasive adenocarcinoma(89;0.0938)			AATCAGAGCGATTCTGAAAAA	0.368													11	23					0	0	0.000673444	0	0
PRDM14	63978	broad.mit.edu	37	8	70978537	70978537	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:70978537T>A	uc003xym.2	-	5	1318	c.1116A>T	c.(1114-1116)AAA>AAT	p.K372N		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	372					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			TATCCAGAAATTTCTCATAGC	0.512													229	332					0	0	0.000781405	0	0
LACTB2	51110	broad.mit.edu	37	8	71550843	71550843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:71550843C>T	uc011lfd.1	-	6	855	c.763G>A	c.(763-765)GAA>AAA	p.E255K	LACTB2_uc003xyp.2_Missense_Mutation_p.E255K	NM_016027	NP_057111	Q53H82	LACB2_HUMAN	lactamase, beta 2	255							hydrolase activity|metal ion binding			ovary(1)	1	Breast(64;0.0716)		Epithelial(68;0.00319)|all cancers(69;0.0175)|OV - Ovarian serous cystadenocarcinoma(28;0.0628)|BRCA - Breast invasive adenocarcinoma(89;0.166)			TTAGCCATTTCATGTAAATTC	0.254													39	62					0	0	0.00128727	0	0
LACTB2	51110	broad.mit.edu	37	8	71556407	71556407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:71556407G>A	uc011lfd.1	-	4	577	c.485C>T	c.(484-486)TCT>TTT	p.S162F	LACTB2_uc003xyp.2_Missense_Mutation_p.S162F	NM_016027	NP_057111	Q53H82	LACB2_HUMAN	lactamase, beta 2	162							hydrolase activity|metal ion binding			ovary(1)	1	Breast(64;0.0716)		Epithelial(68;0.00319)|all cancers(69;0.0175)|OV - Ovarian serous cystadenocarcinoma(28;0.0628)|BRCA - Breast invasive adenocarcinoma(89;0.166)			GCAATCTCCAGAAAAGATAGC	0.353													119	213					0	0	0.000781405	0	0
XKR9	389668	broad.mit.edu	37	8	71619189	71619189	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:71619189G>A	uc003xyq.2	+	4	828	c.294G>A	c.(292-294)AGG>AGA	p.R98R	XKR9_uc010lze.2_Silent_p.R98R|XKR9_uc010lzd.2_5'UTR	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	98						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			CCTTAAAAAGGGGTTACCATG	0.289													7	18					0	0	8.12818e-05	0	0
C8orf84	157869	broad.mit.edu	37	8	73993372	73993372	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:73993372C>T	uc003xzf.2	-	2	496	c.291G>A	c.(289-291)CGG>CGA	p.R97R		NM_153225	NP_694957	Q8IVN8	RPESP_HUMAN	RPE-spondin precursor	97	TSP type-1.				immune response	extracellular region	polysaccharide binding|scavenger receptor activity				0						CCGAGCGCCTCCGCACACGGG	0.662													199	461					0	0	0.000781405	0	0
GDAP1	54332	broad.mit.edu	37	8	75263640	75263640	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:75263640G>A	uc003yah.2	+	2	328	c.249G>A	c.(247-249)GGG>GGA	p.G83G	GDAP1_uc011lfj.1_Intron|GDAP1_uc003yai.2_Silent_p.G15G	NM_018972	NP_061845	Q8TB36	GDAP1_HUMAN	ganglioside-induced differentiation-associated	83	GST N-terminal.					cytoplasm					0	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			TTATCCACGGGGAAAACATAA	0.428													362	574					0	0	0.000781405	0	0
PI15	51050	broad.mit.edu	37	8	75756225	75756225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:75756225G>A	uc003yal.2	+	3	462	c.283G>A	c.(283-285)GAA>AAA	p.E95K	uc003yak.1_Intron|PI15_uc003yam.2_Missense_Mutation_p.E95K	NM_015886	NP_056970	O43692	PI15_HUMAN	protease inhibitor 15 preproprotein	95						extracellular region	peptidase inhibitor activity			central_nervous_system(2)|ovary(1)	3	Breast(64;0.137)		BRCA - Breast invasive adenocarcinoma(89;0.104)|Epithelial(68;0.118)			GGTTTGGGATGAAAATCTTGC	0.403													37	92					0	0	0.00111076	0	0
IL7	3574	broad.mit.edu	37	8	79710383	79710383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:79710383G>A	uc003ybg.2	-	2	672	c.71C>T	c.(70-72)TCA>TTA	p.S24L	IL7_uc003ybe.2_5'UTR|IL7_uc011lfm.1_RNA|IL7_uc003ybh.2_RNA|IL7_uc003ybi.3_RNA	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor	24					bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						ACAATCAGATGATGCTACTGG	0.333													73	127					0	0	0.000781405	0	0
LRRCC1	85444	broad.mit.edu	37	8	86041490	86041490	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:86041490A>G	uc003ycw.2	+	10	1656	c.1502A>G	c.(1501-1503)AAA>AGA	p.K501R	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Missense_Mutation_p.K202R|LRRCC1_uc003ycx.2_Missense_Mutation_p.K408R|LRRCC1_uc003ycy.2_Missense_Mutation_p.K481R	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	501	Potential.				cell division|mitosis	centriole|nucleus					0						AATGAAATTAAAAAACTGACT	0.313													188	362					0	0	0.000781405	0	0
PSKH2	85481	broad.mit.edu	37	8	87076749	87076749	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:87076749C>T	uc011lfy.1	-	2	297	c.297G>A	c.(295-297)AGG>AGA	p.R99R		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	99	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CTCTACCTTCCCTCTCTCTGG	0.502													170	299					0	0	0.000781405	0	0
RIPK2	8767	broad.mit.edu	37	8	90777694	90777694	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:90777694T>A	uc003yee.2	+	3	767	c.453T>A	c.(451-453)AAT>AAA	p.N151K	RIPK2_uc003yef.2_Missense_Mutation_p.N14K	NM_003821	NP_003812	O43353	RIPK2_HUMAN	receptor-interacting serine-threonine kinase 2	151	Protein kinase.				activation of MAPK activity|anti-apoptosis|apoptosis|inflammatory response|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|CARD domain binding|LIM domain binding|protein homodimerization activity|protein serine/threonine kinase activity|signal transducer activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.0474)			AGACTCAGAATATCTTATTGG	0.313													131	239					0	0	0.000781405	0	0
CALB1	793	broad.mit.edu	37	8	91094270	91094270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:91094270C>T	uc003yel.1	-	2	322	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	CALB1_uc003yem.1_RNA|CALB1_uc011lge.1_5'Flank	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	47						nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			AGCCTTCTTTCGCGCCTGCTG	0.443													309	545					0	0	0.000781405	0	0
PDP1	54704	broad.mit.edu	37	8	94935236	94935236	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:94935236C>T	uc003yge.2	+	2	1218	c.949C>T	c.(949-951)CAA>TAA	p.Q317*	PDP1_uc003ygf.2_Nonsense_Mutation_p.Q342*|PDP1_uc010max.2_Nonsense_Mutation_p.Q342*|PDP1_uc011lgm.1_Nonsense_Mutation_p.Q317*|PDP1_uc011lgn.1_Nonsense_Mutation_p.Q376*	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	317					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						CCACAATGCTCAAAATGAAAG	0.507													161	253					0	0	0.000781405	0	0
VPS13B	157680	broad.mit.edu	37	8	100493950	100493950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:100493950C>T	uc003yiv.2	+	25	3901	c.3790C>T	c.(3790-3792)CCA>TCA	p.P1264S	VPS13B_uc003yiw.2_Missense_Mutation_p.P1264S|VPS13B_uc003yiu.1_Missense_Mutation_p.P1264S|VPS13B_uc003yix.1_Missense_Mutation_p.P734S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1264					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TCCTACTTCTCCAGTTAGAAG	0.468													16	31					0	0	0.000308642	0	0
RGS22	26166	broad.mit.edu	37	8	101018276	101018276	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:101018276A>G	uc003yjb.1	-	16	2618	c.2423T>C	c.(2422-2424)TTG>TCG	p.L808S	RGS22_uc003yja.1_Missense_Mutation_p.L627S|RGS22_uc003yjc.1_Missense_Mutation_p.L796S|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	808					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CTCTTTATGCAAAGCCTGTAG	0.383													19	26					0	0	0.000295444	0	0
RIMS2	9699	broad.mit.edu	37	8	104897710	104897710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:104897710G>A	uc003yls.2	+	2	458	c.217G>A	c.(217-219)GAC>AAC	p.D73N	RIMS2_uc003ylp.2_Missense_Mutation_p.D295N|RIMS2_uc003ylw.2_Missense_Mutation_p.D103N|RIMS2_uc003ylq.2_Missense_Mutation_p.D103N|RIMS2_uc003ylr.2_Missense_Mutation_p.D103N	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	326					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AAGTTATAGGGACTCCAACAG	0.408										HNSCC(12;0.0054)			9	17					0	0	0.000442599	0	0
DPYS	1807	broad.mit.edu	37	8	105440328	105440328	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:105440328C>T	uc003yly.3	-	6	1101	c.972G>A	c.(970-972)GGG>GGA	p.G324G		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	324					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AGTTATCAGTCCCTGTTGTGG	0.433													24	53					0	0	0.000586117	0	0
ANGPT1	284	broad.mit.edu	37	8	108276486	108276487	+	Missense_Mutation	DNP	GT	TC	TC			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:108276486_108276487GT>TC	uc003ymn.2	-	8	1766_1767	c.1298_1299AC>GA	c.(1297-1299)GAC>GGA	p.D433G	ANGPT1_uc011lhv.1_Missense_Mutation_p.D233G|ANGPT1_uc003ymo.2_Missense_Mutation_p.D432G	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	433	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			ACATACAGTTGTCATTATCAGC	0.431													4	11					0	0	6.4e-05	0	0
EIF3E	3646	broad.mit.edu	37	8	109260865	109260865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:109260865G>A	uc003ymu.2	-	1	95	c.67C>T	c.(67-69)CTT>TTT	p.L23F	EIF3E_uc003ymv.2_5'UTR|EIF3E_uc010mci.1_Missense_Mutation_p.L23F|EIF3E_uc010mcj.1_Missense_Mutation_p.L23F	NM_001568	NP_001559	P60228	EIF3E_HUMAN	eukaryotic translation initiation factor 3,	23	Sufficient for interaction with TRIM27.|Sufficient for interaction with EPAS1.				negative regulation of translational initiation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|eukaryotic translation initiation factor 3 complex|PML body	protein N-terminus binding			ovary(2)|kidney(1)	3			OV - Ovarian serous cystadenocarcinoma(57;6.84e-10)			AGAAATTCAAGAAGCGGAAAG	0.532													67	84					0	0	0.000781405	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110471946	110471946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:110471946G>A	uc003yne.2	+	47	7231	c.7127G>A	c.(7126-7128)GGA>GAA	p.G2376E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2376	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTCCCTGATGGAACTCTGTTT	0.363										HNSCC(38;0.096)			5	20					0	0	0.000602214	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477280	110477280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:110477280C>T	uc003yne.2	+	49	8323	c.8219C>T	c.(8218-8220)TCT>TTT	p.S2740F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2740	Extracellular (Potential).|PbH1 4.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACTGTCTCTTCTGTGCACTTT	0.478										HNSCC(38;0.096)			22	45					0	0	0.000175454	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110520124	110520124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:110520124G>A	uc003yne.2	+	69	11331	c.11227G>A	c.(11227-11229)GGA>AGA	p.G3743R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3743	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACCTCATAAAGGTTTGTTGGA	0.353										HNSCC(38;0.096)			44	138					0	0	0.000589545	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110535569	110535569	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:110535569T>G	uc003yne.2	+	76	12542	c.12438T>G	c.(12436-12438)TTT>TTG	p.F4146L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	4146	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAATTCCGTTTAGCAGCTGTT	0.413										HNSCC(38;0.096)			39	63					0	0	0.000319135	0	0
CSMD3	114788	broad.mit.edu	37	8	113237040	113237040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:113237040C>T	uc003ynu.2	-	71	11243	c.11084G>A	c.(11083-11085)CGA>CAA	p.R3695Q	CSMD3_uc003yns.2_Missense_Mutation_p.R2897Q|CSMD3_uc003ynt.2_Missense_Mutation_p.R3655Q|CSMD3_uc011lhx.1_Missense_Mutation_p.R3526Q	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3695	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGGATCAAATCGTACCGCCTT	0.428										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			59	135					0	0	0.000781405	0	0
C8orf85	441376	broad.mit.edu	37	8	117950537	117950537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:117950537G>A	uc003yof.2	+	1	74	c.55G>A	c.(55-57)GGA>AGA	p.G19R		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	19											0						GGGGCTCCAGGGACTCCCAGG	0.662													122	211					0	0	0.000781405	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119945466	119945466	+	Missense_Mutation	SNP	G	A	A	rs150777320		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:119945466G>A	uc003yon.3	-	2	427	c.104C>T	c.(103-105)ACC>ATC	p.T35I	TNFRSF11B_uc010mdc.1_RNA	NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	35	TNFR-Cys 1.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			CTGATGAGAGGTTTCTTCGTC	0.483													130	239					0	0	0.000781405	0	0
COL14A1	7373	broad.mit.edu	37	8	121238917	121238917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:121238917G>A	uc003yox.2	+	16	2181	c.1916G>A	c.(1915-1917)AGT>AAT	p.S639N	COL14A1_uc003yoy.2_Missense_Mutation_p.S317N	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	639	Fibronectin type-III 5.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACGACAGACAGTTTTAGGGTG	0.473													11	21					0	0	0.000151284	0	0
COL14A1	7373	broad.mit.edu	37	8	121293266	121293266	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:121293266C>T	uc003yox.2	+	31	4057	c.3792C>T	c.(3790-3792)CTC>CTT	p.L1264L	COL14A1_uc003yoz.2_Silent_p.L229L	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1264	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GTTACCAACTCCATAAAGATG	0.378													10	20					0	0	0.00136819	0	0
ZHX1	11244	broad.mit.edu	37	8	124267642	124267642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:124267642G>A	uc003yqe.2	-	3	975	c.545C>T	c.(544-546)CCT>CTT	p.P182L	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.P182L|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.P182L	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	182					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TTTCATGATAGGAGTTTTACT	0.343													101	197					0	0	0.000781405	0	0
FER1L6	654463	broad.mit.edu	37	8	124992923	124992923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:124992923G>A	uc003yqw.2	+	11	1488	c.1282G>A	c.(1282-1284)GAC>AAC	p.D428N		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	428	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GCCTTCCAAGGACAAAGACTC	0.453											OREG0018964	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	45					0	0	0.000781405	0	0
POU5F1B	5462	broad.mit.edu	37	8	128428546	128428546	+	Silent	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:128428546A>G	uc003ysf.2	+	1	690	c.435A>G	c.(433-435)GAA>GAG	p.E145E	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron|uc011liu.1_RNA	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	145	POU-specific.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGCAGAAAGAACTCGAGCAAT	0.557													29	70					0	0	0.000491102	0	0
PHF20L1	51105	broad.mit.edu	37	8	133848864	133848864	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:133848864T>A	uc003ytt.2	+	16	2314	c.1989T>A	c.(1987-1989)TTT>TTA	p.F663L	PHF20L1_uc011lja.1_Missense_Mutation_p.F637L	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	663							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			ATCAGGACTTTGATTCAACCA	0.378													11	28					0	0	0.000978159	0	0
COL22A1	169044	broad.mit.edu	37	8	139696699	139696699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:139696699G>A	uc003yvd.2	-	39	3428	c.2981C>T	c.(2980-2982)TCA>TTA	p.S994L	COL22A1_uc011ljo.1_Missense_Mutation_p.S294L	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	994	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GAGTCCAGGTGATCCACGGAG	0.507										HNSCC(7;0.00092)			78	176					0	0	0.000781405	0	0
DENND3	22898	broad.mit.edu	37	8	142151323	142151323	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:142151323G>T	uc003yvy.2	+	4	561	c.283G>T	c.(283-285)GGC>TGC	p.G95C	DENND3_uc003yvw.1_Missense_Mutation_p.G108C|DENND3_uc003yvx.2_Missense_Mutation_p.M173I|DENND3_uc010mep.2_Missense_Mutation_p.G108C	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	95										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TTTCTACAATGGCAAAACGCA	0.527													252	490					1.24314e-124	8.81498e-124	0.000781405	1	0
SLC45A4	57210	broad.mit.edu	37	8	142222354	142222354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:142222354G>A	uc003ywd.1	-	7	2398	c.2090C>T	c.(2089-2091)ACC>ATC	p.T697I	SLC45A4_uc003ywc.1_Missense_Mutation_p.T697I|SLC45A4_uc010meq.1_Missense_Mutation_p.T695I	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	748					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CTTCAGCACGGTGGGCTTTTC	0.602													136	163					0	0	0.000781405	0	0
BAI1	575	broad.mit.edu	37	8	143562623	143562623	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:143562623C>T	uc003ywm.2	+	9	2020	c.1837C>T	c.(1837-1839)CTG>TTG	p.L613L		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	613	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					AGGACTCATCCTGCGACGGTG	0.607													278	409					0	0	0.000781405	0	0
CYP11B1	1584	broad.mit.edu	37	8	143960599	143960599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:143960599C>T	uc003yxi.2	-	2	251	c.244G>A	c.(244-246)GAC>AAC	p.D82N	CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.D82N|CYP11B1_uc010mey.2_Missense_Mutation_p.D127N	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	82					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CCTCCCAAGTCGTACCTGTGG	0.637									Familial_Hyperaldosteronism_type_I				228	334					0	0	0.000781405	0	0
CYP11B2	1585	broad.mit.edu	37	8	143993989	143993989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:143993989C>T	uc003yxk.1	-	8	1358	c.1355G>A	c.(1354-1356)GGG>GAG	p.G452E		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	452					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	CAGGCGCCGCCCGAGGCACTG	0.682									Familial_Hyperaldosteronism_type_I				199	402					0	0	0.000781405	0	0
CYP11B2	1585	broad.mit.edu	37	8	143999261	143999261	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:143999261A>G	uc003yxk.1	-	1	1	c.-2_splice	c.e1-1			NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,						aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	TGCCATTCCAATGCTCCCTCC	0.607									Familial_Hyperaldosteronism_type_I				307	560					0	0	0.000781405	0	0
EPPK1	83481	broad.mit.edu	37	8	144945398	144945398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:144945398G>A	uc003zaa.1	-	1	2037	c.2024C>T	c.(2023-2025)CCT>CTT	p.P675L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	675	Plectin 12.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GAACACATCAGGCCCAATGAC	0.592													136	221					0	0	0.000781405	0	0
PLEC	5339	broad.mit.edu	37	8	144993387	144993388	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:144993387_144993388GG>AA	uc003zaf.1	-	32	11182_11183	c.11012_11013CC>TT	c.(11011-11013)CCC>CTT	p.P3671L	PLEC_uc003zab.1_Missense_Mutation_p.P3534L|PLEC_uc003zac.1_Missense_Mutation_p.P3538L|PLEC_uc003zad.2_Missense_Mutation_p.P3534L|PLEC_uc003zae.1_Missense_Mutation_p.P3502L|PLEC_uc003zag.1_Missense_Mutation_p.P3512L|PLEC_uc003zah.2_Missense_Mutation_p.P3520L|PLEC_uc003zaj.2_Missense_Mutation_p.P3561L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3671	Globular 2.|Plectin 16.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGCCCGTCTCGGGGTCCTCCAC	0.624													274	607					0	0	6.4e-05	0	0
ZNF16	7564	broad.mit.edu	37	8	146157959	146157959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:146157959C>T	uc003zet.2	-	4	401	c.214G>A	c.(214-216)GAA>AAA	p.E72K	ZNF16_uc003zeu.2_Missense_Mutation_p.E72K	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		TCCTTGTCTTCAGTCCTGGTG	0.433													60	130					0	0	0.000781405	0	0
SLC1A1	6505	broad.mit.edu	37	9	4573943	4573943	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:4573943G>A	uc003zij.1	+	8	1040	c.804G>A	c.(802-804)GGG>GGA	p.G268G	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	268	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	TGATTGCTGGGAAGATCATAG	0.463													101	246					0	0	0.000781405	0	0
PTPRD	5789	broad.mit.edu	37	9	8331706	8331706	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:8331706G>A	uc003zkk.2	-	43	6121	c.5410C>T	c.(5410-5412)CAG>TAG	p.Q1804*	PTPRD_uc003zkp.2_Nonsense_Mutation_p.Q1398*|PTPRD_uc003zkq.2_Nonsense_Mutation_p.Q1397*|PTPRD_uc003zkr.2_Nonsense_Mutation_p.Q1388*|PTPRD_uc003zks.2_Nonsense_Mutation_p.Q1397*|PTPRD_uc003zkl.2_Nonsense_Mutation_p.Q1795*|PTPRD_uc003zkm.2_Nonsense_Mutation_p.Q1791*|PTPRD_uc003zkn.2_Nonsense_Mutation_p.Q1393*|PTPRD_uc003zko.2_Nonsense_Mutation_p.Q1394*	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1804	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCAGTGAACTGGAACTGCCTT	0.512										TSP Lung(15;0.13)			10	14					0	0	0.000673444	0	0
PTPRD	5789	broad.mit.edu	37	9	8499786	8499786	+	Missense_Mutation	SNP	A	C	C	rs141698449		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:8499786A>C	uc003zkk.2	-	24	2894	c.2183T>G	c.(2182-2184)GTT>GGT	p.V728G	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.V728G|PTPRD_uc003zkm.2_Missense_Mutation_p.V715G|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	728	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGAGACTTTAACAGATGTTGA	0.473										TSP Lung(15;0.13)			35	44					0	0	0.00058488	0	0
TYRP1	7306	broad.mit.edu	37	9	12698617	12698617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:12698617C>T	uc003zkv.3	+	4	1053	c.875C>T	c.(874-876)TCC>TTC	p.S292F		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	292	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		GTCTGTGACTCCTTGGAAGAT	0.388									Oculocutaneous_Albinism				10	13					0	0	0.000978159	0	0
CER1	9350	broad.mit.edu	37	9	14722307	14722307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:14722307C>T	uc003zlj.2	-	1	409	c.364G>A	c.(364-366)GAG>AAG	p.E122K		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	122					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		GGAGATTTCTCCATTTTCATT	0.507													49	72					0	0	0.000781405	0	0
SH3GL2	6456	broad.mit.edu	37	9	17793432	17793433	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:17793432_17793433CC>TT	uc003zna.2	+	8	1084_1085	c.796_797CC>TT	c.(796-798)CCA>TTA	p.P266L	SH3GL2_uc011lmy.1_Missense_Mutation_p.P219L	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	266					axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		CCTGGAGTTTCCAACTGGAGAC	0.47													24	17					0	0	6.4e-05	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18681895	18681895	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:18681895C>G	uc003zne.3	+	12	1554	c.1427C>G	c.(1426-1428)CCA>CGA	p.P476R	ADAMTSL1_uc003znc.3_Missense_Mutation_p.P476R	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	476	TSP type-1 3.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGCTGTAGCCCAAAAACAAAG	0.502													4	231					0	0	0.00024832	0	0
IFNA4	3441	broad.mit.edu	37	9	21187427	21187427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:21187427C>T	uc003zon.2	-	1	172	c.104G>A	c.(103-105)AGG>AAG	p.R35K		NM_021068	NP_066546	P05014	IFNA4_HUMAN	interferon, alpha 4 precursor	35					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;2.69e-202)|Lung(24;2.26e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CAAGGCCCTCCTATTACCCAG	0.522													28	41					0	0	0.000491102	0	0
IFNA2	3440	broad.mit.edu	37	9	21385088	21385088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:21385088C>T	uc003zpb.2	-	1	309	c.241G>A	c.(241-243)GAG>AAG	p.E81K		NM_000605	NP_000596	P01563	IFNA2_HUMAN	interferon, alpha 2 precursor	81					blood coagulation|cell-cell signaling|induction of apoptosis|inflammatory response|negative regulation of interleukin-13 secretion|negative regulation of interleukin-5 secretion|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of transcription, DNA-dependent|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			breast(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)	Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TGGATCATCTCATGGAGGACA	0.478													138	220					0	0	0.000781405	0	0
IFT74	80173	broad.mit.edu	37	9	26962038	26962038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:26962038C>T	uc010mja.2	+	2	200	c.73C>T	c.(73-75)CCT>TCT	p.P25S	IFT74_uc010mjb.2_Missense_Mutation_p.P25S|IFT74_uc003zqf.3_Missense_Mutation_p.P25S|IFT74_uc003zqg.3_Missense_Mutation_p.P25S	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	25						cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum				skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		AGGAAGGCCTCCTTCTGGGAT	0.383													123	209					0	0	0.000781405	0	0
NFX1	4799	broad.mit.edu	37	9	33311115	33311115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:33311115C>T	uc003zsq.2	+	6	1449	c.1388C>T	c.(1387-1389)CCA>CTA	p.P463L	SUGT1P1_uc010mjq.1_Intron|NFX1_uc011lnw.1_Missense_Mutation_p.P463L|NFX1_uc003zso.2_Missense_Mutation_p.P463L|NFX1_uc003zsp.1_Missense_Mutation_p.P463L|NFX1_uc010mjr.1_Missense_Mutation_p.P463L|NFX1_uc003zsr.2_Missense_Mutation_p.P463L	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	463	NF-X1-type 1.				inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		CTCTGCCATCCAGGACCCTGC	0.453													85	148					0	0	0.000781405	0	0
PTENP1	11191	broad.mit.edu	37	9	33675973	33675973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:33675973G>A	uc003zth.3	-	1	1446	c.575C>T	c.(574-576)TCC>TTC	p.S192F		NR_023917				SubName: Full=Phosphatase and tensin homolog 2; Flags: Fragment;												0						TGAATTGGAGGAATACATCTT	0.443													218	389					0	0	0.000781405	0	0
PRSS3	5646	broad.mit.edu	37	9	33797945	33797945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:33797945G>A	uc003ztj.3	+	3	490	c.490G>A	c.(490-492)GAC>AAC	p.D164N	uc003ztk.1_Intron|PRSS3_uc003zti.3_Missense_Mutation_p.D121N|PRSS3_uc003ztl.3_Missense_Mutation_p.D107N	NM_007343	NP_031369	P35030	TRY3_HUMAN	mesotrypsin isoform 1 preproprotein	164	Peptidase S1.	Charge relay system.			digestion|endothelial cell migration|zymogen activation	extracellular space	calcium ion binding|protein binding|serine-type endopeptidase activity|serine-type peptidase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)			TCTGGACAATGACATCATGCT	0.552													68	134					0	0	0.000781405	0	0
ARID3C	138715	broad.mit.edu	37	9	34625778	34625778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:34625778C>T	uc011lon.1	-	2	352	c.352G>A	c.(352-354)GAA>AAA	p.E118K		NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	118	ARID.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		TCCAGAAATTCCTTCCTCTTG	0.532													304	520					0	0	0.000781405	0	0
CCL21	6366	broad.mit.edu	37	9	34709556	34709556	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:34709556C>T	uc003zvo.2	-	3	396	c.312G>A	c.(310-312)AGG>AGA	p.R104R		NM_002989	NP_002980	O00585	CCL21_HUMAN	small inducible cytokine A21 precursor	104	C-terminal basic extension.				activation of Rho GTPase activity|cell maturation|cell-cell signaling|dendritic cell chemotaxis|dendritic cell dendrite assembly|establishment of T cell polarity|immune response|immunological synapse formation|inflammatory response|mesangial cell-matrix adhesion|negative regulation of leukocyte apoptosis|positive regulation of actin filament polymerization|positive regulation of cell adhesion mediated by integrin|positive regulation of cell-matrix adhesion|positive regulation of dendritic cell antigen processing and presentation|positive regulation of ERK1 and ERK2 cascade|positive regulation of filopodium assembly|positive regulation of glycoprotein biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of myeloid dendritic cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of pseudopodium assembly|positive regulation of receptor-mediated endocytosis|release of sequestered calcium ion into cytosol|response to prostaglandin E stimulus|ruffle organization|T cell costimulation	extracellular space	CCR7 chemokine receptor binding|chemokine activity				0	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		CCCTGTCCTTCCTGCAGCCCT	0.582													147	280					0	0	0.000781405	0	0
FANCG	2189	broad.mit.edu	37	9	35077033	35077033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:35077033C>T	uc003zwb.1	-	6	1204	c.712G>A	c.(712-714)GGC>AGC	p.G238S	FANCG_uc003zwa.1_5'UTR|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Missense_Mutation_p.G238S	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	238					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GGACACAGGCCTGAGGCCGCT	0.577			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				276	450					0	0	0.000781405	0	0
FRMPD1	22844	broad.mit.edu	37	9	37737191	37737191	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:37737191C>T	uc004aag.1	+	14	1544	c.1500C>T	c.(1498-1500)TTC>TTT	p.F500F	FRMPD1_uc004aah.1_Silent_p.F500F|FRMPD1_uc011lqm.1_Silent_p.F322F|FRMPD1_uc011lqn.1_Silent_p.F369F	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	500						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CCTCCATTTTCCTCTGGCCTG	0.522													130	204					0	0	0.000781405	0	0
IGFBPL1	347252	broad.mit.edu	37	9	38414147	38414147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:38414147C>T	uc004aba.2	-	2	537	c.514G>A	c.(514-516)GTG>ATG	p.V172M		NM_001007563	NP_001007564	Q8WX77	IBPL1_HUMAN	insulin-like growth factor binding protein-like	172	Ig-like C2-type.				regulation of cell growth	extracellular region	insulin-like growth factor binding				0				GBM - Glioblastoma multiforme(29;0.0437)|Lung(182;0.116)		GACAGGCCCACCTGCGCCCCG	0.537													144	307					0	0	0.000781405	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627001	43627001	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:43627001C>T	uc011lrb.1	-	4	1715	c.1686G>A	c.(1684-1686)CAG>CAA	p.Q562Q		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	562						integral to membrane					0						TAAAGACGTCCTGAGATTTTT	0.488													303	136					0	0	0.000781405	0	0
LOC442421	442421	broad.mit.edu	37	9	66499680	66499680	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:66499680C>A	uc004aee.1	+	1	490	c.490C>A	c.(490-492)CCC>ACC	p.P164T	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TCATGTTAACCCCTTCCCAGG	0.582													34	215					5.04308e-16	3.53741e-15	0.00128727	1	0
LOC442421	442421	broad.mit.edu	37	9	66499739	66499739	+	Silent	SNP	G	A	A	rs150502168	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:66499739G>A	uc004aee.1	+	1	549	c.549G>A	c.(547-549)CCG>CCA	p.P183P	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GCCTGGGACCGTCCATTTTCG	0.602													67	468					0	0	0.000781405	0	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587													32	386					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	9	68413573	68413573	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:68413573G>A	uc004aex.2	+	1		c.128G>A								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CAGTGGCGCCGGATCTAGGAA	0.572													3	12					0	0	6.4e-05	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71509297	71509297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:71509297G>A	uc004agu.2	+	8	819	c.514G>A	c.(514-516)GGA>AGA	p.G172R	PIP5K1B_uc011lrq.1_Missense_Mutation_p.G172R|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	172	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		AAAATTTTACGGACTGTATTG	0.328													16	10					0	0	0.000958276	0	0
APBA1	320	broad.mit.edu	37	9	72131545	72131545	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:72131545C>T	uc004ahh.2	-	2	858	c.582G>A	c.(580-582)CAG>CAA	p.Q194Q		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	194					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						ACACGTGCTCCTGGAGGCCGC	0.692													93	39					0	0	0.000781405	0	0
RORB	6096	broad.mit.edu	37	9	77275628	77275628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:77275628G>A	uc004aji.2	+	5	815	c.766G>A	c.(766-768)GAA>AAA	p.E256K	RORB_uc004ajh.2_Missense_Mutation_p.E245K	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	256	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CCACACCTATGAAGAAATTAA	0.388													44	21					0	0	0.000437636	0	0
PCSK5	5125	broad.mit.edu	37	9	78803528	78803528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:78803528G>A	uc004ajz.2	+	18	2855	c.2317G>A	c.(2317-2319)GAT>AAT	p.D773N	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Missense_Mutation_p.D47N	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	773	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CTCCTGTGAAGATGGACGGTA	0.532													17	16					0	0	0.00121646	0	0
VPS13A	23230	broad.mit.edu	37	9	79932605	79932605	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:79932605G>A	uc004akr.2	+	40	5207	c.4947G>A	c.(4945-4947)CTG>CTA	p.L1649L	VPS13A_uc004akp.3_Silent_p.L1649L|VPS13A_uc004akq.3_Silent_p.L1649L|VPS13A_uc004aks.2_Silent_p.L1610L|VPS13A_uc004akt.2_5'Flank|VPS13A_uc010mpo.1_Silent_p.L245L	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1649					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TAAAATCCCTGACACTAAAGG	0.303													6	1					0	0	8.12818e-05	0	0
RASEF	158158	broad.mit.edu	37	9	85597659	85597659	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:85597659G>C	uc004amo.1	-	17	2417	c.2156C>G	c.(2155-2157)TCC>TGC	p.S719C		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	719					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						ATTGGTAATGGATCTGCTGTC	0.318													3	116					0	0	6.4e-05	0	0
GOLM1	51280	broad.mit.edu	37	9	88667464	88667464	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:88667464G>A	uc004aol.2	-	4	550	c.352C>T	c.(352-354)CGA>TGA	p.R118*	GOLM1_uc010mqd.1_Intron|GOLM1_uc004aom.2_Nonsense_Mutation_p.R118*	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	118	Potential.|Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						TGCAGCACTCGGATGAGCCTC	0.547													478	268					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	9	90745232	90745232	+	Missense_Mutation	SNP	A	T	T	rs142941527	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:90745232A>T	uc011lti.1	-	4	2749	c.2720T>A	c.(2719-2721)ATG>AAG	p.M907K	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		CCCAGTAGGCATGCTCTGGAG	0.547													91	131					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	9	90745999	90745999	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:90745999C>T	uc011lti.1	-	4	1982	c.1953G>A	c.(1951-1953)GTG>GTA	p.V651V						SubName: Full=cDNA FLJ59639;																		CCCAAAACCTCACAATATGGG	0.532													322	219					0	0	0.000781405	0	0
C9orf3	84909	broad.mit.edu	37	9	97823036	97823036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:97823036C>T	uc004ava.2	+	13	2311	c.2176C>T	c.(2176-2178)CCC>TCC	p.P726S	C9orf3_uc004auy.2_Missense_Mutation_p.P627S|C9orf3_uc004auz.1_Missense_Mutation_p.P627S|C9orf3_uc004avc.2_Missense_Mutation_p.P181S|C9orf3_uc011luj.1_Missense_Mutation_p.P88S|C9orf3_uc011luk.1_Missense_Mutation_p.P67S|C9orf3_uc004avd.2_Missense_Mutation_p.P88S	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	726					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		GACTCTGAGCCCCCGAACTCT	0.517													120	106					0	0	0.000781405	0	0
ZNF782	158431	broad.mit.edu	37	9	99582013	99582013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:99582013C>T	uc004awp.1	-	6	573	c.292G>A	c.(292-294)GGC>AGC	p.G98S	ZNF782_uc011lup.1_5'UTR	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	98					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				AAATGTTTGCCTTGATTTTCT	0.313													21	11					0	0	0.000295444	0	0
CYLC2	1539	broad.mit.edu	37	9	105767118	105767118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:105767118G>A	uc004bbs.2	+	4	392	c.322G>A	c.(322-324)GAT>AAT	p.D108N		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	108	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TGTCGAGGTGGATTCTAAAGC	0.363													16	21					0	0	0.000958276	0	0
COL27A1	85301	broad.mit.edu	37	9	117070023	117070024	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:117070023_117070024GG>AT	uc011lxl.1	+	59	5182_5183	c.5182_5183GG>AT	c.(5182-5184)GGA>ATA	p.G1728I	COL27A1_uc004bii.2_RNA|COL27A1_uc011lxn.1_Missense_Mutation_p.G43I	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1728	Fibrillar collagen NC1.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CACTCATGGTGGACAGACGTGT	0.609													143	70					0	0	6.4e-05	0	0
AKNA	80709	broad.mit.edu	37	9	117108961	117108962	+	Silent	DNP	GG	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:117108961_117108962GG>TT	uc004biq.3	-	16	3636_3637	c.3501_3502CC>AA	c.(3499-3504)CTCCGA>CTAAGA	p.1167_1168LR>LR	AKNA_uc004bin.3_Silent_p.414_415LR>LR|AKNA_uc004bio.3_Silent_p.627_628LR>LR|AKNA_uc004bip.3_Silent_p.1086_1087LR>LR|AKNA_uc004bir.3_Silent_p.1167_1168LR>LR|AKNA_uc004bis.3_Silent_p.1167_1168LR>LR|AKNA_uc010mve.2_Silent_p.1048_1049LR>LR	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1167_1168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						AGGGACAGTCGGAGCACCTCCC	0.559													157	114					0	0	6.4e-05	0	0
OR1J1	347168	broad.mit.edu	37	9	125239279	125239279	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:125239279G>A	uc011lyu.1	-	1	927	c.927C>T	c.(925-927)GGC>GGT	p.G309G	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						gagccactgcgcctgaccTAC	0.179													20	15					0	0	0.000958276	0	0
NR5A1	2516	broad.mit.edu	37	9	127253505	127253505	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:127253505C>T	uc004boo.1	-	6	1180	c.993G>A	c.(991-993)GTG>GTA	p.V331V		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	331	Important for dimerization.|Ligand-binding.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						TGGTCAGCTCCACCTGGGGGC	0.697													152	70					0	0	0.000781405	0	0
ZBTB34	403341	broad.mit.edu	37	9	129643003	129643003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:129643003C>T	uc004bqm.3	+	2	1410	c.1313C>T	c.(1312-1314)CCA>CTA	p.P438L		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	438	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGTGCTTTCCATTCCAAGGT	0.532													82	29					0	0	0.000781405	0	0
C9orf119	375757	broad.mit.edu	37	9	131038524	131038524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:131038524C>T	uc004bup.2	+	1	100	c.100C>T	c.(100-102)CCT>TCT	p.P34S	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.P34S	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	34					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						GGCCGGCTTTCCTTGGGTGCG	0.682													151	77					0	0	0.000781405	0	0
PPP2R4	5524	broad.mit.edu	37	9	131885396	131885396	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:131885396C>T	uc004bxm.1	+	3	462	c.195C>T	c.(193-195)ACC>ACT	p.T65T	PPP2R4_uc004bxl.1_Silent_p.T65T|PPP2R4_uc011mbo.1_Silent_p.T65T|PPP2R4_uc010myr.1_Intron|PPP2R4_uc004bxn.1_Silent_p.T65T|PPP2R4_uc004bxo.1_Silent_p.T65T|PPP2R4_uc011mbp.1_Intron|PPP2R4_uc011mbq.1_Silent_p.T65T|PPP2R4_uc010mys.1_Silent_p.T30T	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'	65					ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		AGAAGCTGACCTTCGAGTACA	0.468													299	174					0	0	0.000781405	0	0
BAT2L1	84726	broad.mit.edu	37	9	134354730	134354730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:134354730C>T	uc004can.3	+	18	4905	c.4850C>T	c.(4849-4851)ACC>ATC	p.T1617I	BAT2L1_uc004cao.3_Missense_Mutation_p.T975I	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1617							protein binding				0						GGTGACGTGACCGTGCCTGGC	0.577													138	56					0	0	0.000781405	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134505629	134505629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:134505629G>A	uc004cbc.2	-	6	813	c.683C>T	c.(682-684)CCT>CTT	p.P228L	RAPGEF1_uc004cbb.2_Missense_Mutation_p.P246L|RAPGEF1_uc010mzn.2_Missense_Mutation_p.P233L|RAPGEF1_uc004cbd.2_Missense_Mutation_p.P233L	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	228					activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CTACCCATCAGGCTTGCTGGC	0.612													111	64					0	0	0.000781405	0	0
C9orf171	389799	broad.mit.edu	37	9	135374956	135374956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:135374956C>T	uc004cbn.2	+	4	649	c.601C>T	c.(601-603)CCT>TCT	p.P201S	C9orf171_uc004cbo.2_Missense_Mutation_p.P165S	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	201										ovary(4)|large_intestine(1)	5						GCCCCCTCTCCCTCCAAACAT	0.597													161	108					0	0	0.000781405	0	0
SURF6	6838	broad.mit.edu	37	9	136199489	136199489	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:136199489C>A	uc004cdb.3	-	4	579	c.501G>T	c.(499-501)AAG>AAT	p.K167N		NM_006753	NP_006744	O75683	SURF6_HUMAN	surfeit 6	167						granular component	DNA binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.16e-06)|Epithelial(140;8.34e-06)|all cancers(34;7.08e-05)		CCTTCCTGGCCTTCTCTTTCG	0.672													11	796					0.000978159	0.00669854	0.000978159	1	0
COL5A1	1289	broad.mit.edu	37	9	137716551	137716551	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:137716551G>C	uc004cfe.2	+	62	5186	c.4804G>C	c.(4804-4806)GTG>CTG	p.V1602L	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1602	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CGAGAACTACGTGGACTACGC	0.622													183	114					0	0	0.000781405	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070139	141070139	+	Missense_Mutation	SNP	C	T	T	rs143443709	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:141070139C>T	uc004com.2	+	3	298	c.37C>T	c.(37-39)CTC>TTC	p.L13F	TUBBP5_uc010ncq.2_Missense_Mutation_p.L127F					RecName: Full=Putative tubulin beta-4q chain;												0						CGGGCAGGTCCTCAGGCCAGA	0.667													17	368					0	0	0.00127121	0	0
CRLF2	64109	broad.mit.edu	37	X	1314897	1314897	+	RNA	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:1314897C>T	uc004cpm.1	-	6		c.946G>A						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TCCTTACCTCCATAATTTCCA	0.473			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								61	51					0	0	0.000781405	0	0
ASMT	438	broad.mit.edu	37	X	1742137	1742137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:1742137G>A	uc004cqd.2	+	3	320	c.175G>A	c.(175-177)GGG>AGG	p.G59R	ASMT_uc010ncy.2_Missense_Mutation_p.G59R|ASMT_uc004cqe.2_Missense_Mutation_p.G59R	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	59					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CAGCGCCCATGGGACAGAGCT	0.642													215	136					0	0	0.000781405	0	0
ARSH	347527	broad.mit.edu	37	X	2951408	2951408	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:2951408C>T	uc011mhj.1	+	9	1671	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	557						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				AAGATGACATCCTTCCCATGG	0.512													14	4					0	0	0.000422831	0	0
MXRA5	25878	broad.mit.edu	37	X	3238901	3238901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:3238901G>A	uc004crg.3	-	5	4982	c.4825C>T	c.(4825-4827)CCT>TCT	p.P1609S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1609						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTTTGGCAGGGACTCTGGTT	0.493													423	132					0	0	0.000781405	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821747	5821747	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:5821747C>T	uc010ndh.2	-	5	1473	c.972G>A	c.(970-972)AAG>AAA	p.K324K	NLGN4X_uc004crp.2_Silent_p.K344K|NLGN4X_uc004crq.2_Silent_p.K324K|NLGN4X_uc010ndi.2_Silent_p.K361K|NLGN4X_uc004crr.2_Silent_p.K324K|NLGN4X_uc010ndj.2_Silent_p.K324K	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	324	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GGATGAGCTCCTTGTAGTTCT	0.592													200	88					0	0	0.000781405	0	0
SHROOM2	357	broad.mit.edu	37	X	9914785	9914785	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:9914785C>T	uc004csu.1	+	10	4749	c.4659C>T	c.(4657-4659)GAC>GAT	p.D1553D	SHROOM2_uc004csv.2_Silent_p.D387D|SHROOM2_uc011mic.1_Silent_p.D388D|SHROOM2_uc004csw.1_Silent_p.D388D	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1553	ASD2.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AGAACCTGGACCGCCGCGAGC	0.547													84	19					0	0	0.000781405	0	0
MID1	4281	broad.mit.edu	37	X	10427726	10427726	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:10427726C>T	uc004cte.3	-	8	1598	c.1407G>A	c.(1405-1407)GCG>GCA	p.A469A	MID1_uc004ctd.3_Silent_p.A180A|MID1_uc004ctg.3_Silent_p.A469A|MID1_uc004cth.3_Silent_p.A431A|MID1_uc004ctk.3_Silent_p.A469A|MID1_uc004cti.3_Silent_p.A469A|MID1_uc004ctj.3_Silent_p.A469A|MID1_uc011mie.1_RNA|MID1_uc004csz.3_Silent_p.A141A|MID1_uc004cta.3_Silent_p.A225A|MID1_uc004ctb.3_Silent_p.A129A|MID1_uc004ctc.3_Silent_p.A236A	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	469	Fibronectin type-III.				microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						TGCGGCTGCCCGCCTGGTTGA	0.522													43	10					0	0	0.000509022	0	0
TCEANC	170082	broad.mit.edu	37	X	13681193	13681193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:13681193C>T	uc004cvk.2	+	2	796	c.566C>T	c.(565-567)TCC>TTC	p.S189F	TCEANC_uc010nee.1_Missense_Mutation_p.S189F|TCEANC_uc010nef.1_Missense_Mutation_p.S189F|TCEANC_uc010neg.1_Missense_Mutation_p.S219F|TCEANC_uc004cvl.2_RNA	NM_152634	NP_689847	Q8N8B7	TEANC_HUMAN	TFIIS central domain-containing protein 1	189	TFIIS central.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1						ACTAGTTCTTCCACAGATCAA	0.388													198	65					0	0	0.000781405	0	0
ACE2	59272	broad.mit.edu	37	X	15582236	15582236	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:15582236G>A	uc004cxa.1	-	17	2388	c.2220C>T	c.(2218-2220)TCC>TCT	p.S740S	ACE2_uc004cxb.2_Silent_p.S740S	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	740	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	TCAGCCATATGGAAACAGGGG	0.493													46	20					0	0	0.000781405	0	0
SCML2	10389	broad.mit.edu	37	X	18260653	18260653	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:18260653T>G	uc004cyl.2	-	14	2037	c.1880A>C	c.(1879-1881)GAC>GCC	p.D627A	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Intron|SCML2_uc011miz.1_Intron|SCML2_uc010nfc.2_Intron	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	627					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					GGTTGAAGGGTCCTTAGAGAA	0.458													116	15					0	0	0.000781405	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998066	27998066	+	Silent	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:27998066G>T	uc004dbx.1	-	1	1501	c.1386C>A	c.(1384-1386)GTC>GTA	p.V462V		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	462	WD 6.									ovary(3)|skin(1)	4						CCCAGAAGAAGACGTGCCCAC	0.468													10	6					0.000442599	0.00304971	0.000442599	1	0
FAM47A	158724	broad.mit.edu	37	X	34149124	34149124	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:34149124G>A	uc004ddg.2	-	1	1305	c.1272C>T	c.(1270-1272)CTC>CTT	p.L424L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	424										ovary(4)|central_nervous_system(1)	5						TGTATAGTAGGAGATTGGACA	0.547													94	29					0	0	0.000781405	0	0
FAM47A	158724	broad.mit.edu	37	X	34149162	34149162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:34149162G>A	uc004ddg.2	-	1	1267	c.1234C>T	c.(1234-1236)CGC>TGC	p.R412C		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	412										ovary(4)|central_nervous_system(1)	5						GGTTCCAGGCGGAGATGGCAC	0.557													103	34					0	0	0.000781405	0	0
FAM47C	442444	broad.mit.edu	37	X	37027310	37027311	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:37027310_37027311GG>AC	uc004ddl.1	+	1	841_842	c.827_828GG>AC	c.(826-828)GGG>GAC	p.G276D		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	276										ovary(3)	3						GAGCCTCCTGGGACTGGAGTGT	0.614													196	63					0	0	6.4e-05	0	0
FAM47C	442444	broad.mit.edu	37	X	37028253	37028253	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:37028253G>A	uc004ddl.1	+	1	1784	c.1770G>A	c.(1768-1770)CGG>CGA	p.R590R		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	590										ovary(3)	3						CCAAGACTCGGGTGTCCAGTC	0.652													165	49					0	0	0.000781405	0	0
CXorf36	79742	broad.mit.edu	37	X	45059964	45059964	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:45059964G>A	uc004dgg.2	-	1	183	c.108C>T	c.(106-108)TCC>TCT	p.S36S	CXorf36_uc004dgi.3_Silent_p.S36S	NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	36						extracellular region				lung(1)	1						GAGAAGAAAGGGAAGAAGCTG	0.572													81	14					0	0	0.000781405	0	0
USP11	8237	broad.mit.edu	37	X	47104264	47104264	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:47104264T>C	uc004dhp.2	+	15	2156	c.2156T>C	c.(2155-2157)CTG>CCG	p.L719P	USP11_uc004dhq.2_Missense_Mutation_p.L445P	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	719					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CTGTTCACCCTGCAGACGGTG	0.602													4	260					0	0	0.00024832	0	0
CFP	5199	broad.mit.edu	37	X	47487623	47487623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:47487623G>A	uc004dig.3	-	3	407	c.281C>T	c.(280-282)TCT>TTT	p.S94F	CFP_uc004dih.2_Missense_Mutation_p.S94F|CFP_uc004dii.1_Missense_Mutation_p.S30F|CFP_uc010nhu.2_Missense_Mutation_p.S94F	NM_001145252	NP_001138724	P27918	PROP_HUMAN	complement factor properdin precursor	94	TSP type-1 1.				complement activation, alternative pathway|defense response to bacterium	extracellular space				breast(2)|lung(1)	3						GGAGCCCTCAGAGCACGTCAC	0.632													129	23					0	0	0.000781405	0	0
ZNF182	7569	broad.mit.edu	37	X	47837015	47837015	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:47837015G>A	uc004dir.2	-	7	817	c.471C>T	c.(469-471)CCC>CCT	p.P157P	ZNF182_uc004dis.2_Silent_p.P138P|ZNF182_uc004dit.2_Silent_p.P157P|ZNF182_uc011mlu.1_Silent_p.P137P	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	157					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						CGTGTTTATCGGGTCTTTGTA	0.328													62	30					0	0	0.000781405	0	0
GATA1	2623	broad.mit.edu	37	X	48649640	48649640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:48649640G>A	uc004dkq.3	+	2	215	c.124G>A	c.(124-126)GAT>AAT	p.D42N		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	42					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.M1fs(7)|p.D42_D74>(3)|p.P38fs*14(2)|p.D42fs*27(2)|p.E39fs*83(2)|p.F33fs*23(1)|p.L41fs*23(1)|p.F33fs*90(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						TGAGGGCTTGGATGCAGCAGC	0.632			Mis|F		megakaryoblastic leukemia of Downs Syndrome								60	13					0	0	0.000781405	0	0
WDR45	11152	broad.mit.edu	37	X	48934105	48934105	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:48934105G>A	uc004dmk.1	-	6	592	c.420C>T	c.(418-420)ACC>ACT	p.T140T	PRAF2_uc004dmi.2_5'Flank|PRAF2_uc011mmt.1_Intron|WDR45_uc004dmj.1_Silent_p.T90T|WDR45_uc004dml.1_Silent_p.T141T|WDR45_uc004dmm.1_Silent_p.T105T|WDR45_uc010nim.1_Silent_p.T140T|WDR45_uc004dmn.1_Silent_p.T31T|WDR45_uc004dmo.1_Silent_p.T163T|WDR45_uc004dmp.1_Silent_p.T141T	NM_001029896	NP_001025067	Q9Y484	WIPI4_HUMAN	WD repeat domain 45 isoform 2	140					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1						GGTTGTCCCGGGTATCAAACT	0.532													474	109					0	0	0.000781405	0	0
CCNB3	85417	broad.mit.edu	37	X	50094252	50094252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:50094252G>A	uc004dox.3	+	12	4271	c.3973G>A	c.(3973-3975)GAG>AAG	p.E1325K	CCNB3_uc004doy.2_Missense_Mutation_p.E1325K|CCNB3_uc004doz.2_Missense_Mutation_p.E221K|CCNB3_uc010njq.2_Missense_Mutation_p.E217K|CCNB3_uc004dpa.2_Missense_Mutation_p.E164K	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1325					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TCCCTTCCTGGAGCATTACAG	0.473													76	20					0	0	0.000781405	0	0
SSX8	280659	broad.mit.edu	37	X	52657344	52657344	+	RNA	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:52657344G>A	uc011moa.1	+	5		c.611G>A			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAATCATCCCGAAGGTGAGTA	0.408													105	38					0	0	0.000781405	0	0
XAGE3	170626	broad.mit.edu	37	X	52893806	52893806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:52893806C>T	uc004dre.2	-	4	371	c.311G>A	c.(310-312)GGA>GAA	p.G104E	XAGE3_uc004drf.2_Missense_Mutation_p.G104E	NM_130776	NP_570132	Q8WTP9	GAGD4_HUMAN	XAGE-3 protein	104											0						TAGCATACCTCCTTCTGGCAT	0.368													101	38					0	0	0.000781405	0	0
FGD1	2245	broad.mit.edu	37	X	54496554	54496554	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:54496554G>A	uc004dtg.2	-	4	1730	c.996C>T	c.(994-996)TCC>TCT	p.S332S	FGD1_uc011moi.1_Silent_p.S90S	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	332					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CAACCTCTTGGGAGCCAGGCC	0.527													120	29					0	0	0.000781405	0	0
ITIH5L	347365	broad.mit.edu	37	X	54777626	54777626	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:54777626G>A	uc004dtj.2	-	12	3570	c.3540C>T	c.(3538-3540)GCC>GCT	p.A1180A		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1180					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TCTTCAGCAGGGCAGGTTGGT	0.602													41	28					0	0	0.00148497	0	0
TRO	7216	broad.mit.edu	37	X	54956372	54956372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:54956372C>T	uc004dtq.2	+	12	3322	c.3215C>T	c.(3214-3216)GCC>GTC	p.A1072V	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Missense_Mutation_p.A603V|TRO_uc004dtw.2_Missense_Mutation_p.A675V|TRO_uc004dtx.2_Missense_Mutation_p.A455V	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	1072	62 X 10 AA approximate tandem repeats.|27; approximate.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						TTTGGCTGTGCCGTCAGCACC	0.567													59	10					0	0	0.000781405	0	0
LAS1L	81887	broad.mit.edu	37	X	64744894	64744894	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:64744894G>A	uc004dwa.1	-	8	1065	c.993C>T	c.(991-993)TTC>TTT	p.F331F	LAS1L_uc004dwc.1_Silent_p.F331F|LAS1L_uc004dwd.1_Silent_p.F289F	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	331						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						TGGGGACAAGGAAGCCATCAT	0.512													48	11					0	0	0.000781405	0	0
XIST	7503	broad.mit.edu	37	X	73067862	73067862	+	RNA	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:73067862A>G	uc004ebm.1	-	1		c.4727T>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCTGAACACTAGGGAAGTGAG	0.438													3	124					0	0	6.4e-05	0	0
ATP7A	538	broad.mit.edu	37	X	77276522	77276522	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:77276522G>A	uc004ecx.3	+	14	3022	c.2862G>A	c.(2860-2862)TTG>TTA	p.L954L		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	954	Helical; (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						CCACCCTCTTGGTATGGATTG	0.348													267	82					0	0	0.000781405	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83400545	83400545	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:83400545G>A	uc004eej.1	-	6	519	c.442C>T	c.(442-444)CTG>TTG	p.L148L	RPS6KA6_uc011mqt.1_Silent_p.L148L|RPS6KA6_uc011mqu.1_Silent_p.L45L|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	148	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						ATTAAGTACAGTTTCCCTTCA	0.289													10	4					0	0	0.000978159	0	0
TMEM35	59353	broad.mit.edu	37	X	100349860	100349860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:100349860C>T	uc004egw.2	+	2	575	c.419C>T	c.(418-420)TCT>TTT	p.S140F		NM_021637	NP_067650	Q53FP2	TMM35_HUMAN	transmembrane protein 35	140						cytoplasmic membrane-bounded vesicle|integral to membrane|peroxisomal membrane					0						GACCGGTCTTCTGAGAAGAAG	0.542													391	107					0	0	0.000781405	0	0
H2BFWT	158983	broad.mit.edu	37	X	103268125	103268125	+	Silent	SNP	C	T	T	rs138729092	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:103268125C>T	uc004elr.2	-	1	132	c.108G>A	c.(106-108)ACG>ACA	p.T36T		NM_001002916	NP_001002916	Q7Z2G1	H2BWT_HUMAN	H2B histone family, member W, testis-specific	36					nucleosome assembly	nuclear membrane|nucleosome	DNA binding			ovary(1)	1						CCTCAGAGGTCGTCTCAGAGG	0.627													147	227					0	0	0.000781405	0	0
COL4A6	1288	broad.mit.edu	37	X	107418430	107418430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:107418430G>A	uc004enw.3	-	30	2952	c.2849C>T	c.(2848-2850)CCG>CTG	p.P950L	COL4A6_uc004env.3_Missense_Mutation_p.P949L|COL4A6_uc011msn.1_Missense_Mutation_p.P949L|COL4A6_uc010npk.2_Missense_Mutation_p.P949L	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	950	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GACTGGCCCCGGATTGCCTCT	0.512									Alport_syndrome_with_Diffuse_Leiomyomatosis				91	31					0	0	0.000781405	0	0
COL4A6	1288	broad.mit.edu	37	X	107418434	107418434	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:107418434T>G	uc004enw.3	-	30	2948	c.2845A>C	c.(2845-2847)AAT>CAT	p.N949H	COL4A6_uc004env.3_Missense_Mutation_p.N948H|COL4A6_uc011msn.1_Missense_Mutation_p.N948H|COL4A6_uc010npk.2_Missense_Mutation_p.N948H	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	949	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GGCCCCGGATTGCCTCTGTCT	0.517									Alport_syndrome_with_Diffuse_Leiomyomatosis				83	33					0	0	0.000781405	0	0
DCX	1641	broad.mit.edu	37	X	110644344	110644344	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:110644344C>T	uc004epd.2	-	3	994	c.822G>A	c.(820-822)AAG>AAA	p.K274K	DCX_uc011msv.1_Silent_p.K274K|DCX_uc004epe.2_Silent_p.K193K|DCX_uc004epf.2_Silent_p.K193K|DCX_uc004epg.2_Silent_p.K193K	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	274	Doublecortin 2.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						CACGCACAGCCTTCCGAGGCT	0.537													21	4					0	0	0.00121646	0	0
HTR2C	3358	broad.mit.edu	37	X	114141940	114141940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:114141940C>T	uc004epu.1	+	6	2067	c.1339C>T	c.(1339-1341)CCC>TCC	p.P447S	HTR2C_uc010nqc.1_Missense_Mutation_p.P447S|HTR2C_uc004epv.1_3'UTR	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	447	Cytoplasmic (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ACCAGTAAATCCCTCCAGTGT	0.413													25	9					0	0	0.000878237	0	0
KIAA1210	57481	broad.mit.edu	37	X	118215320	118215320	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:118215320C>T	uc004era.3	-	14	5102	c.5102G>A	c.(5101-5103)TGG>TAG	p.W1701*		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1701										ovary(4)|skin(1)	5						CATGTGGCTCCATGCTTTGGC	0.388													297	86					0	0	0.000781405	0	0
STAG2	10735	broad.mit.edu	37	X	123220440	123220440	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:123220440C>T	uc004etz.3	+	29	3436	c.3097C>T	c.(3097-3099)CGA>TGA	p.R1033*	STAG2_uc004eua.2_Nonsense_Mutation_p.R1033*|STAG2_uc004eub.2_Nonsense_Mutation_p.R1033*|STAG2_uc004euc.2_Nonsense_Mutation_p.R1033*|STAG2_uc004eud.2_Nonsense_Mutation_p.R1033*|STAG2_uc004eue.2_Nonsense_Mutation_p.R1033*	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	1033					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						GATGTCACTCCGAAGAGAGGA	0.413													37	12					0	0	0.00128727	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125686405	125686405	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:125686405A>C	uc004eul.2	-	1	438	c.187T>G	c.(187-189)TGG>GGG	p.W63G		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	63										skin(3)|ovary(1)	4						GCGGGGCCCCACCCGCCTACC	0.701													18	390					0	0	0.000781405	0	0
UTP14A	10813	broad.mit.edu	37	X	129053189	129053189	+	Silent	SNP	C	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:129053189C>T	uc004euz.2	+	7	604	c.576C>T	c.(574-576)CTC>CTT	p.L192L	UTP14A_uc011mup.1_Silent_p.L140L|UTP14A_uc011muq.1_Silent_p.L138L|UTP14A_uc004eva.1_5'Flank	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	192					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						TCAACCTCCTCCATAAGAACA	0.478													246	64					0	0	0.000781405	0	0
BCORL1	63035	broad.mit.edu	37	X	129190019	129190019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:129190019G>A	uc004evb.1	+	13	5158	c.5044G>A	c.(5044-5046)GGC>AGC	p.G1682S	BCORL1_uc004evc.1_Missense_Mutation_p.G518S	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1682					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						ATCCCCCCCAGGCTCCTCTGA	0.622													259	72					0	0	0.000781405	0	0
ZNF280C	55609	broad.mit.edu	37	X	129377802	129377802	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:129377802T>C	uc004evm.2	-	4	370	c.216A>G	c.(214-216)AAA>AAG	p.K72K	ZNF280C_uc010nrf.1_Silent_p.K72K	NM_017666	NP_060136	Q8ND82	Z280C_HUMAN	zinc finger protein 280C	72	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)	3						TCTTTATTCCTTTTGAAGATG	0.239													2	9					0	0	6.4e-05	0	0
IGSF1	3547	broad.mit.edu	37	X	130408837	130408837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:130408837G>A	uc004ewd.2	-	18	3725	c.3487C>T	c.(3487-3489)CCC>TCC	p.P1163S	IGSF1_uc004ewe.3_Missense_Mutation_p.P1157S|IGSF1_uc004ewf.2_Missense_Mutation_p.P1143S	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1163	Extracellular (Potential).|Ig-like C2-type 12.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GACAGAGAGGGTTTAGGGGGC	0.473													198	67					0	0	0.000781405	0	0
GPR112	139378	broad.mit.edu	37	X	135429626	135429626	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:135429626T>G	uc004ezu.1	+	6	4052	c.3761T>G	c.(3760-3762)TTA>TGA	p.L1254*	GPR112_uc010nsb.1_Nonsense_Mutation_p.L1049*|GPR112_uc010nsc.1_Nonsense_Mutation_p.L1021*	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1254	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ACCTCTGTCTTATCTTCCGAC	0.418													24	8					0	0	0.00047179	0	0
ATP11C	286410	broad.mit.edu	37	X	138864889	138864889	+	Splice_Site	SNP	T	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:138864889T>A	uc004faz.2	-	18	1879	c.1780_splice	c.e18-1	p.D594_splice	ATP11C_uc004fay.2_Splice_Site|ATP11C_uc004fba.2_Splice_Site_p.D594_splice	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a						ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					ATACCCATCCTAGGAGTAAAG	0.358													104	24					0	0	0.000781405	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993571	140993571	+	Silent	SNP	T	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:140993571T>C	uc004fbt.2	+	4	667	c.381T>C	c.(379-381)CCT>CCC	p.P127P	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	127							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGTCTCCTCTGCAGAATC	0.502										HNSCC(15;0.026)			3	159					0	0	6.4e-05	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996573	140996573	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:140996573A>T	uc004fbt.2	+	4	3669	c.3383A>T	c.(3382-3384)GAA>GTA	p.E1128V	MAGEC1_uc010nsl.1_Missense_Mutation_p.E195V	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1128							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ACTGCCACAGAAAGTGCAAGC	0.493										HNSCC(15;0.026)			66	16					0	0	0.000781405	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291749	141291749	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:141291749A>T	uc004fbu.1	-	3	373	c.25T>A	c.(25-27)TTC>ATC	p.F9I		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	9						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ACGTTGCGGAATGGAACGCCT	0.537										HNSCC(46;0.14)			240	101					0	0	0.000781405	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717675	142717675	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:142717675T>G	uc004fbx.2	-	2	1626	c.1250A>C	c.(1249-1251)AAG>ACG	p.K417T	SLITRK4_uc004fby.2_Missense_Mutation_p.K417T	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	417	Extracellular (Potential).|LRR 8.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TACGTCTCCCTTAATCACTGT	0.383													21	393					0	0	0.00121646	0	0
PRRG3	79057	broad.mit.edu	37	X	150868507	150868507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:150868507G>A	uc004few.1	+	3	437	c.47G>A	c.(46-48)CGA>CAA	p.R16Q		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	16						extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTCCTGAAACGATTCCCTCGT	0.587													175	61					0	0	0.000781405	0	0
PRRG3	79057	broad.mit.edu	37	X	150869277	150869278	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:150869277_150869278GG>AT	uc004few.1	+	4	858_859	c.468_469GG>AT	c.(466-471)CAGGTG>CAATTG	p.V157L		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	157	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ACAGCCCCCAGGTGGTGCTGGG	0.683													109	58					0	0	6.4e-05	0	0
GABRE	2564	broad.mit.edu	37	X	151123218	151123218	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:151123218G>T	uc004ffi.2	-	9	1530	c.1476C>A	c.(1474-1476)TTC>TTA	p.F492L	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	492	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAGAAGAAGAAAGTCACTG	0.547													31	26					4.74835e-14	3.32769e-13	0.000339439	1	0
SLC6A8	6535	broad.mit.edu	37	X	152956946	152956947	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:152956946_152956947CC>TT	uc004fib.3	+	3	860_861	c.582_583CC>TT	c.(580-585)AGCCTG>AGTTTG	p.194_195SL>SL	SLC6A8_uc004fic.3_Silent_p.194_195SL>SL|SLC6A8_uc011myx.1_Silent_p.79_80SL>SL|SLC6A8_uc010nuj.2_5'Flank|SLC6A8_uc010nui.1_Silent_p.79_80SL>SL	NM_005629	NP_005620	P48029	SC6A8_HUMAN	solute carrier family 6 member 8 isoform 1	194_195	Extracellular (Potential).				creatine metabolic process|muscle contraction	integral to plasma membrane	creatine:sodium symporter activity|neurotransmitter:sodium symporter activity			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Creatine(DB00148)	CCAATGCCAGCCTGGCCAACCT	0.629													671	196					0	0	6.4e-05	0	0
ABCD1	215	broad.mit.edu	37	X	153008675	153008675	+	Silent	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:153008675G>A	uc004fif.2	+	9	2265	c.1866G>A	c.(1864-1866)AGG>AGA	p.R622R	ABCD1_uc004fig.2_Silent_p.R122R|ABCD1_uc004fih.2_RNA	NM_000033	NP_000024	P33897	ABCD1_HUMAN	ATP-binding cassette, sub-family D (ALD), member	622	ABC transporter.				fatty acid beta-oxidation using acyl-CoA oxidase|peroxisomal membrane transport|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|identical protein binding|peroxisomal fatty-acyl-CoA transporter activity				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGACCCCCAGGCCCAAGTACG	0.672													5	118					0	0	0.000295444	0	0
FAM50A	9130	broad.mit.edu	37	X	153678615	153678616	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:153678615_153678616CC>TT	uc004fll.3	+	12	1057_1058	c.959_960CC>TT	c.(958-960)CCC>CTT	p.P320L		NM_004699	NP_004690	Q14320	FA50A_HUMAN	XAP-5 protein	320					spermatogenesis	nucleus				ovary(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CACATCTTTCCCGCCAGCCGCT	0.629													387	113					0	0	6.4e-05	0	0
F8	2157	broad.mit.edu	37	X	154159546	154159546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:154159546G>A	uc004fmt.2	-	14	2690	c.2519C>T	c.(2518-2520)TCA>TTA	p.S840L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	840	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TGCTCCAGGTGATGGATCATC	0.463													36	14					0	0	0.000814825	0	0
ZFY	7544	broad.mit.edu	37	Y	2847352	2847352	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrY:2847352A>G	uc004fqj.2	+	8	2045	c.1724A>G	c.(1723-1725)CAG>CGG	p.Q575R	ZFY_uc011nan.1_Missense_Mutation_p.Q384R|ZFY_uc010nwe.2_Missense_Mutation_p.Q498R	NM_003411	NP_003402	P08048	ZFY_HUMAN	zinc finger protein, Y-linked isoform 1	575	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACCAATGCCAGTACTGTGAA	0.423													2	5					0	0	6.4e-05	0	0
GABRD	2563	broad.mit.edu	37	1	1956774	1956774	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:1956774delC	uc001aip.2	+	3	278	c.183delC	c.(181-183)GGCfs	p.G61fs		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	61	Extracellular (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		TCCTTGCAGGCCCCCCCGTGA	0.647													9	1477	---	---	---	---					
AJAP1	55966	broad.mit.edu	37	1	4772583	4772585	+	In_Frame_Del	DEL	CCA	-	-	rs141981296	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:4772583_4772585delCCA	uc001alm.1	+	2	1034_1036	c.653_655delCCA	c.(652-657)GCCACC>GCC	p.T225del	AJAP1_uc001aln.2_In_Frame_Del_p.T225del	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	225	Thr-rich.|Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		ACTGTGGccgccaccaccaccac	0.502													10	230	---	---	---	---					
KCNAB2	8514	broad.mit.edu	37	1	6155659	6155660	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:6155659_6155660insA	uc009vlv.1	+	13	914_915	c.779_780insA	c.(778-780)CCAfs	p.P260fs	KCNAB2_uc001alv.1_Frame_Shift_Ins_p.P260fs|KCNAB2_uc001alw.1_Frame_Shift_Ins_p.P246fs|KCNAB2_uc001alx.1_Frame_Shift_Ins_p.P260fs|KCNAB2_uc001aly.1_Frame_Shift_Ins_p.P308fs|KCNAB2_uc009vlw.1_Frame_Shift_Ins_p.P193fs|KCNAB2_uc001alu.2_Frame_Shift_Ins_p.P260fs	NM_003636	NP_003627	Q13303	KCAB2_HUMAN	potassium voltage-gated channel, shaker-related	260						cytoplasm|integral to membrane|juxtaparanode region of axon	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;4.88e-22)|all_lung(118;4.21e-08)|Lung NSC(185;9.77e-07)|all_hematologic(16;2.78e-06)|all_neural(13;3.18e-06)|Acute lymphoblastic leukemia(12;0.000272)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00106)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;6.9e-37)|GBM - Glioblastoma multiforme(13;8.8e-31)|OV - Ovarian serous cystadenocarcinoma(86;1.45e-19)|Colorectal(212;2.46e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|Kidney(185;7.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00131)|BRCA - Breast invasive adenocarcinoma(365;0.00133)|STAD - Stomach adenocarcinoma(132;0.00391)|READ - Rectum adenocarcinoma(331;0.0649)		AGTGGCATCCCACCCTACTCAA	0.604													7	1568	---	---	---	---					
PLEKHG5	57449	broad.mit.edu	37	1	6536011	6536013	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:6536011_6536013delCTC	uc001ano.1	-	4	396_398	c.295_297delGAG	c.(295-297)GAGdel	p.E99del	PLEKHG5_uc001ann.1_In_Frame_Del_p.E80del|PLEKHG5_uc001anq.1_In_Frame_Del_p.E120del|PLEKHG5_uc001anp.1_In_Frame_Del_p.E120del|PLEKHG5_uc009vma.1_5'UTR|PLEKHG5_uc010nzr.1_In_Frame_Del_p.E112del|PLEKHG5_uc001ank.1_In_Frame_Del_p.E43del|PLEKHG5_uc009vmb.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anl.1_In_Frame_Del_p.E43del|PLEKHG5_uc001anm.1_In_Frame_Del_p.E43del	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	99	Poly-Glu.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGAGCTCTCCTCCTCCTCC	0.631											OREG0013041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	886	---	---	---	---					
SLC2A5	6518	broad.mit.edu	37	1	9098944	9098946	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:9098944_9098946delCAG	uc001apo.2	-	9	1331_1333	c.1039_1041delCTG	c.(1039-1041)CTGdel	p.L347del	SLC2A5_uc010nzy.1_In_Frame_Del_p.L288del|SLC2A5_uc010nzz.1_In_Frame_Del_p.L232del|SLC2A5_uc010oaa.1_In_Frame_Del_p.L303del|SLC2A5_uc010oab.1_In_Frame_Del_p.L347del	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	347	Helical; Name=9; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TGGAGAAGCCCAGCAGCAGCAGC	0.675													7	404	---	---	---	---					
SPEN	23013	broad.mit.edu	37	1	16255142	16255143	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:16255142_16255143delGA	uc001axk.1	+	11	2611_2612	c.2407_2408delGA	c.(2407-2409)GAGfs	p.E803fs	SPEN_uc010obp.1_Frame_Shift_Del_p.E762fs	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	803	Arg-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GGAGAGAGTGGAGAGAGAGAGA	0.431													7	517	---	---	---	---					
MST1P2	11209	broad.mit.edu	37	1	16975913	16975918	+	RNA	DEL	CCTGTT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:16975913_16975918delCCTGTT	uc010och.1	+	11		c.1935_1940delCCTGTT			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGTTGGGCACCCTGTTCCAGAACCCA	0.578													23	523	---	---	---	---					
ARID1A	8289	broad.mit.edu	37	1	27105676	27105678	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:27105676_27105678delGAA	uc001bmv.1	+	20	5660_5662	c.5287_5289delGAA	c.(5287-5289)GAAdel	p.E1767del	ARID1A_uc001bmu.1_In_Frame_Del_p.E1550del|ARID1A_uc001bmx.1_In_Frame_Del_p.E613del|ARID1A_uc009vsm.1_In_Frame_Del_p.E95del|ARID1A_uc009vsn.1_In_Frame_Del_p.E9del	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1767					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GGAGGGTGGGGAAGAAGAAGAAG	0.483			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								13	683	---	---	---	---					
LRRC41	10489	broad.mit.edu	37	1	46752129	46752129	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:46752129delA	uc001cpn.2	-	4	444	c.400delT	c.(400-402)TCCfs	p.S134fs	LRRC41_uc010omb.1_Frame_Shift_Del_p.S134fs|LRRC41_uc001cpo.1_Frame_Shift_Del_p.S134fs	NM_006369	NP_006360	Q15345	LRC41_HUMAN	MUF1 protein	134										ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(166;0.155)					AGAACATGGGAAAAAAAGGCC	0.483													7	718	---	---	---	---					
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:54298190_54298192delTTA	uc001cvs.2	-	3	492_494	c.251_253delTAA	c.(250-255)ATAAGT>AGT	p.I84del	TMEM48_uc010onu.1_In_Frame_Del_p.I84del|TMEM48_uc001cvt.2_5'UTR|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	84	Helical; Name=2; (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTGAAAATACTTATTATTATTAT	0.305													9	312	---	---	---	---					
JAK1	3716	broad.mit.edu	37	1	65306996	65306997	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:65306996_65306997insT	uc001dbu.1	-	19	2829_2830	c.2580_2581insA	c.(2578-2583)AAACCAfs	p.K860fs	JAK1_uc009wam.1_Frame_Shift_Ins_p.K848fs|JAK1_uc009wal.1_Frame_Shift_Ins_p.K37fs	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	860_861					interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		TCAGTTGCTGGTTTTTTTTCTG	0.470			Mis		ALL								8	472	---	---	---	---					
PSMA5	5686	broad.mit.edu	37	1	109964541	109964542	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:109964541_109964542insC	uc001dxn.2	-	2	121_122	c.36_37insG	c.(34-39)GTGAATfs	p.V12fs	PSMA5_uc010ovj.1_Intron	NM_002790	NP_002781	P28066	PSA5_HUMAN	proteasome alpha 5 subunit	12_13					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity				0		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.045)|Colorectal(144;0.116)|Epithelial(280;0.187)|all cancers(265;0.196)|LUSC - Lung squamous cell carcinoma(189;0.235)		GAAAAAGTATTCACGCCCCtat	0.347													7	1383	---	---	---	---					
NBPF9	400818	broad.mit.edu	37	1	144615246	144615247	+	Splice_Site	INS	-	AG	AG			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:144615246_144615247insAG	uc009wig.1	+	3	190	c.114_splice	c.e3+2	p.L38_splice	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_5'UTR|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_5'UTR|NBPF9_uc010oyg.1_Frame_Shift_Ins_p.K39fs|NBPF9_uc009wii.1_5'UTR|NBPF9_uc009wif.1_RNA|C1orf152_uc001elf.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818							cytoplasm					0						GTAAACCTCAAAGAGATGTTTT	0.470													24	239	---	---	---	---					
ADAMTSL4	54507	broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	-	-	rs149280379		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:150530506delG	uc001eux.2	+	14	2499	c.2263delG	c.(2263-2265)GGGfs	p.G755fs	ADAMTSL4_uc001euw.2_Frame_Shift_Del_p.G755fs|ADAMTSL4_uc009wlw.2_Frame_Shift_Del_p.G778fs|ADAMTSL4_uc010pcg.1_Frame_Shift_Del_p.G716fs|ADAMTSL4_uc009wlx.2_5'UTR	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	755	TSP type-1 2.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCAGGAATTTGGGGGGGGTGG	0.692													9	1782	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152083468	152083469	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:152083468_152083469insG	uc001ezp.2	-	2	2224_2225	c.2224_2225insC	c.(2224-2226)CGGfs	p.R742fs	TCHH_uc009wne.1_Frame_Shift_Ins_p.R742fs	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	742					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCACTCTCCCGGCGCCGCCTC	0.653													7	2702	---	---	---	---					
RUSC1	23623	broad.mit.edu	37	1	155292619	155292620	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:155292619_155292620insC	uc001fkj.2	+	2	1284_1285	c.1055_1056insC	c.(1054-1056)CTCfs	p.L352fs	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_5'Flank|C1orf104_uc001fki.2_Intron|RUSC1_uc001fkk.2_Frame_Shift_Ins_p.L352fs|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_5'Flank|RUSC1_uc001fkl.2_5'Flank|RUSC1_uc001fkp.2_5'Flank|RUSC1_uc001fkq.2_5'Flank|RUSC1_uc010pgb.1_5'Flank|RUSC1_uc009wqp.1_5'Flank|RUSC1_uc001fkn.2_5'Flank|RUSC1_uc001fko.2_5'Flank|RUSC1_uc001fkr.2_5'Flank|RUSC1_uc001fks.2_5'Flank	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	352						cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			GACACCGAGCTCCCCCCCTCGG	0.703													8	581	---	---	---	---					
GPATCH4	54865	broad.mit.edu	37	1	156565385	156565385	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:156565385delT	uc001fpm.2	-	8	787	c.748delA	c.(748-750)AGGfs	p.R250fs	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Frame_Shift_Del_p.R245fs	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	245	Potential.					intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGATGTCGCCTTTTCTTCTTC	0.458													7	2781	---	---	---	---					
BCAN	63827	broad.mit.edu	37	1	156626159	156626160	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:156626159_156626160insG	uc001fpp.2	+	9	2364_2365	c.2028_2029insG	c.(2026-2031)TATGGGfs	p.Y676fs		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	676_677	EGF-like.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGCCTGGCTATGGGGGGGACCT	0.624													10	1954	---	---	---	---					
COPA	1314	broad.mit.edu	37	1	160295426	160295427	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:160295426_160295427insT	uc009wti.2	-	7	906_907	c.512_513insA	c.(511-513)AACfs	p.N171fs	COPA_uc001fvv.3_Frame_Shift_Ins_p.N171fs|COPA_uc009wtj.1_Frame_Shift_Ins_p.N117fs	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	171					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGGGGACAGGTTTTTTTTCCT	0.406													7	689	---	---	---	---					
MAPKAPK2	9261	broad.mit.edu	37	1	206858676	206858678	+	In_Frame_Del	DEL	GCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:206858676_206858678delGCC	uc001hem.1	+	1	388_390	c.102_104delGCC	c.(100-105)CAGCCG>CAG	p.P40del	MAPKAPK2_uc001hel.1_In_Frame_Del_p.P40del	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	40	Pro-rich.|Poly-Pro.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			ccccggcgcagccgccgccgccg	0.271													8	177	---	---	---	---					
RBM34	23029	broad.mit.edu	37	1	235323838	235323838	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr1:235323838delT	uc001hwn.2	-	3	383	c.353delA	c.(352-354)AAGfs	p.K118fs	RBM34_uc001hwo.2_Intron|ARID4B_uc001hwp.2_RNA|RBM34_uc010pxp.1_Frame_Shift_Del_p.K118fs	NM_015014	NP_055829	P42696	RBM34_HUMAN	RNA binding motif protein 34 isoform 1	118						nucleolus	nucleotide binding|RNA binding			central_nervous_system(1)	1	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;5.43e-05)|Epithelial(3;0.000121)			GTCTGCCAACTTTTTTTCTGC	0.343													7	1474	---	---	---	---					
PHYH	5264	broad.mit.edu	37	10	13330486	13330488	+	In_Frame_Del	DEL	CCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:13330486_13330488delCCT	uc001imf.2	-	6	638_640	c.550_552delAGG	c.(550-552)AGGdel	p.R184del	PHYH_uc001ime.2_In_Frame_Del_p.R84del|PHYH_uc001img.2_In_Frame_Del_p.R167del	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	184					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	GATCGCTGGGCCTGAAGGGGAAA	0.537													117	386	---	---	---	---					
FRMD4A	55691	broad.mit.edu	37	10	13699134	13699142	+	In_Frame_Del	DEL	CGCCCCCCG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:13699134_13699142delCGCCCCCCG	uc001ims.2	-	22	2799_2807	c.2447_2455delCGGGGGGCG	c.(2446-2457)GCGGGGGGCGGT>GGT	p.AGG816del	FRMD4A_uc009xjf.1_In_Frame_Del_p.AGG816del	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	816_818						cytoplasm|cytoskeleton	binding			ovary(1)|skin(1)|pancreas(1)	3						AGGTACACAccgccccccgcgccccccgc	0.550													16	63	---	---	---	---					
NCOA4	8031	broad.mit.edu	37	10	51580659	51580659	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:51580659delA	uc001jis.3	+	3	448	c.245delA	c.(244-246)GAGfs	p.E82fs	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Frame_Shift_Del_p.E98fs|NCOA4_uc010qhd.1_Frame_Shift_Del_p.E98fs|NCOA4_uc010qhe.1_Frame_Shift_Del_p.R12fs|NCOA4_uc010qhf.1_Intron|NCOA4_uc001jit.2_Frame_Shift_Del_p.E82fs|NCOA4_uc009xoo.2_Frame_Shift_Del_p.E82fs	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	82					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						CAGCTTAAAGAGGAGACACTT	0.473			T	RET	papillary thyroid 								152	405	---	---	---	---					
PCDH15	65217	broad.mit.edu	37	10	55587198	55587200	+	In_Frame_Del	DEL	GGC	-	-	rs12246234		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:55587198_55587200delGGC	uc001jju.1	-	32	4715_4717	c.4320_4322delGCC	c.(4318-4323)CCGCCT>CCT	p.1440_1441PP>P	PCDH15_uc010qhq.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhr.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qhs.1_In_Frame_Del_p.1452_1453PP>P|PCDH15_uc010qht.1_In_Frame_Del_p.1447_1448PP>P|PCDH15_uc010qhu.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_In_Frame_Del_p.1437_1438PP>P|PCDH15_uc010qhw.1_In_Frame_Del_p.1400_1401PP>P|PCDH15_uc010qhx.1_In_Frame_Del_p.1369_1370PP>P|PCDH15_uc010qhy.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhz.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qia.1_In_Frame_Del_p.1418_1419PP>P|PCDH15_uc010qib.1_In_Frame_Del_p.1415_1416PP>P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1440_1441	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACCTggcggaggcggcggcggcg	0.438										HNSCC(58;0.16)			10	510	---	---	---	---					
KIAA0913	23053	broad.mit.edu	37	10	75560463	75560464	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:75560463_75560464insC	uc009xrl.2	+	24	5109_5110	c.5077_5078insC	c.(5077-5079)TCCfs	p.S1693fs	KIAA0913_uc001jve.2_Frame_Shift_Ins_p.S1698fs|KIAA0913_uc001jvf.2_Frame_Shift_Ins_p.S1511fs|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Frame_Shift_Ins_p.S1120fs|KIAA0913_uc010qkr.1_Frame_Shift_Ins_p.S1108fs|KIAA0913_uc001jvj.2_Frame_Shift_Ins_p.S1108fs|KIAA0913_uc009xrn.1_Frame_Shift_Ins_p.S104fs	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	1693							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					CTTCTCCCGCTCCCCCCCCTAC	0.604													7	832	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81070787	81070789	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr10:81070787_81070789delCTC	uc001kaf.2	+	24	3514_3516	c.2942_2944delCTC	c.(2941-2946)GCTCCT>GCT	p.P986del	ZMIZ1_uc001kag.2_In_Frame_Del_p.P862del|ZMIZ1_uc010qlq.1_Intron	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	986	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CACAGTGGGGCTCCTCCTCCTCC	0.635													7	1199	---	---	---	---					
DCHS1	8642	broad.mit.edu	37	11	6662141	6662142	+	Frame_Shift_Ins	INS	-	G	G	rs143767864	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:6662141_6662142insG	uc001mem.1	-	2	1113_1114	c.703_704insC	c.(703-705)CGGfs	p.R235fs		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	235	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGGCCCTCCGGGGGGGTGAA	0.589													8	1177	---	---	---	---					
KBTBD4	55709	broad.mit.edu	37	11	47599139	47599139	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:47599139delA	uc001nfx.2	-	2	584	c.413delT	c.(412-414)TTGfs	p.L138fs	NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_Frame_Shift_Del_p.L163fs|KBTBD4_uc001nfz.2_Frame_Shift_Del_p.L154fs|KBTBD4_uc001nfy.2_Frame_Shift_Del_p.L138fs|NDUFS3_uc010rhn.1_5'Flank|NDUFS3_uc001nga.2_5'Flank	NM_016506	NP_057590	Q9NVX7	KBTB4_HUMAN	kelch repeat and BTB (POZ) domain containing 4	138										ovary(1)|central_nervous_system(1)	2						TGTGCGGGCCAAAAACCGAGA	0.517													8	1529	---	---	---	---					
PATL1	219988	broad.mit.edu	37	11	59423460	59423460	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:59423460delA	uc001noe.3	-	7	925	c.782delT	c.(781-783)CTCfs	p.L261fs	PATL1_uc009yms.1_Intron|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	261	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						TGCTCTCTGGAGGGGGCTGAG	0.418													27	76	---	---	---	---					
AHNAK	79026	broad.mit.edu	37	11	62288902	62288902	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:62288902delG	uc001ntl.2	-	5	13287	c.12987delC	c.(12985-12987)TTCfs	p.F4329fs	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4329					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CCTCTCCTTTGAATCCTGGCA	0.507													226	291	---	---	---	---					
SF1	7536	broad.mit.edu	37	11	64534435	64534437	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:64534435_64534437delGCT	uc001obb.1	-	12	1894_1896	c.1517_1519delAGC	c.(1516-1521)CAGCCT>CCT	p.Q506del	SF1_uc010rnm.1_In_Frame_Del_p.Q198del|SF1_uc010rnn.1_In_Frame_Del_p.Q480del|SF1_uc001oaz.1_In_Frame_Del_p.Q631del|SF1_uc001oba.1_In_Frame_Del_p.Q506del|SF1_uc001obc.1_In_Frame_Del_p.Q506del|SF1_uc001obd.1_In_Frame_Del_p.507_508AA>A|SF1_uc001obe.1_In_Frame_Del_p.392_393AA>A|SF1_uc010rno.1_In_Frame_Del_p.Q391del	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	506	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						GGTGGCGGAGGCTGCTGCTGCTG	0.660													7	1337	---	---	---	---					
P2RY2	5029	broad.mit.edu	37	11	72946202	72946203	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr11:72946202_72946203insC	uc001otj.2	+	3	1331_1332	c.998_999insC	c.(997-999)CGCfs	p.R333fs	P2RY2_uc001otk.2_Frame_Shift_Ins_p.R333fs|P2RY2_uc001otl.2_Frame_Shift_Ins_p.R333fs	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	333	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	ACCCCGGCTCGCCGCAGGCTGG	0.649													7	542	---	---	---	---					
KRT73	319101	broad.mit.edu	37	12	53001991	53001991	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:53001991delT	uc001sas.2	-	9	1647	c.1612delA	c.(1612-1614)ACCfs	p.T538fs		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	538	Tail.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TATCTCATGGTTTTTTTGGTG	0.532													8	1296	---	---	---	---					
SMARCC2	6601	broad.mit.edu	37	12	56559126	56559127	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:56559126_56559127insG	uc001skb.2	-	26	3220_3221	c.3114_3115insC	c.(3112-3117)CCAGGGfs	p.P1038fs	SMARCC2_uc001skd.2_Frame_Shift_Ins_p.P1069fs|SMARCC2_uc001ska.2_Frame_Shift_Ins_p.P1069fs|SMARCC2_uc001skc.2_Frame_Shift_Ins_p.P1068fs|SMARCC2_uc010sqf.1_Frame_Shift_Ins_p.P958fs	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1038_1039	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			GGGGGAACCCCTGGTGGGACTG	0.584													10	840	---	---	---	---					
TSFM	10102	broad.mit.edu	37	12	58177067	58177068	+	Splice_Site	DEL	GT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:58177067_58177068delGT	uc001sqi.2	+	2	280	c.231_splice	c.e2+1	p.Q77_splice	TSFM_uc010sse.1_Splice_Site|TSFM_uc001sqh.2_Splice_Site_p.Q77_splice|TSFM_uc010ssf.1_Splice_Site_p.Q77_splice	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial						regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CCTCAAACAGGTGTGTGTGTGG	0.559													8	1172	---	---	---	---					
ZFC3H1	196441	broad.mit.edu	37	12	72057256	72057258	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:72057256_72057258delGCT	uc001swo.2	-	1	492_494	c.133_135delAGC	c.(133-135)AGCdel	p.S45del	ZFC3H1_uc010sts.1_In_Frame_Del_p.S45del|ZFC3H1_uc001swp.2_In_Frame_Del_p.S45del|THAP2_uc001swq.2_5'Flank	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	45	Ser-rich.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GCCCGCCGCCGCTGCTGCTGCTG	0.631											OREG0021993	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	930	---	---	---	---					
C12orf51	283450	broad.mit.edu	37	12	112600860	112600860	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:112600860delG	uc009zwc.2	-	68	11858	c.11840delC	c.(11839-11841)CCAfs	p.P3947fs		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TGTGCCATCTGGGGGGGCGAT	0.627													9	1224	---	---	---	---					
VPS37B	79720	broad.mit.edu	37	12	123351892	123351892	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr12:123351892delG	uc001udl.2	-	4	732	c.629delC	c.(628-630)CCAfs	p.P210fs		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	210	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		CGGGGGTGGTGGGGGGGGGAT	0.716													10	229	---	---	---	---					
WBP4	11193	broad.mit.edu	37	13	41654830	41654830	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:41654830delG	uc001uxt.2	+	9	918	c.805delG	c.(805-807)GAAfs	p.E269fs	WBP4_uc010tfd.1_Frame_Shift_Del_p.E248fs	NM_007187	NP_009118	O75554	WBP4_HUMAN	WW domain-containing binding protein 4	269					nuclear mRNA cis splicing, via spliceosome	nuclear speck|spliceosomal complex	nucleic acid binding|proline-rich region binding|zinc ion binding			breast(2)|kidney(1)	3		Lung NSC(96;3.55e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;3.11e-09)|Epithelial(112;3.37e-06)|OV - Ovarian serous cystadenocarcinoma(117;8.3e-05)|GBM - Glioblastoma multiforme(144;0.00102)|BRCA - Breast invasive adenocarcinoma(63;0.07)		AACACAGAAAGAAAAAAGTAT	0.308													7	249	---	---	---	---					
FAM155A	728215	broad.mit.edu	37	13	108518337	108518338	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr13:108518337_108518338insC	uc001vql.2	-	1	1123_1124	c.607_608insG	c.(607-609)GACfs	p.D203fs		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	203						integral to membrane	binding			skin(1)	1						CTCCTGCCCGTCCCCCCCGGCC	0.609													12	1199	---	---	---	---					
LRP10	26020	broad.mit.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:23341527_23341529delCCT	uc001whd.2	+	1	568_570	c.15_17delCCT	c.(13-18)ACCCTC>ACC	p.L11del	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	11					endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TGTTGGCCACCCTCCTCCTCCTC	0.670													10	915	---	---	---	---					
ACIN1	22985	broad.mit.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:23528502_23528503delTC	uc001wit.3	-	19	4208_4209	c.3880_3881delGA	c.(3880-3882)GAAfs	p.E1294fs	CDH24_uc001wil.2_5'Flank|CDH24_uc010akf.2_5'Flank|CDH24_uc001win.3_5'Flank|ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Frame_Shift_Del_p.E536fs|ACIN1_uc001wiq.3_Frame_Shift_Del_p.E536fs|ACIN1_uc001wir.3_Frame_Shift_Del_p.E567fs|ACIN1_uc001wis.3_Frame_Shift_Del_p.E975fs|ACIN1_uc010akg.2_Frame_Shift_Del_p.E1281fs	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1294	Arg/Asp/Glu/Lys-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		ccgctccctttctctctctctc	0.436											OREG0022595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	341	---	---	---	---					
C14orf4	64207	broad.mit.edu	37	14	77493648	77493650	+	In_Frame_Del	DEL	GCG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:77493648_77493650delGCG	uc001xsy.2	-	1	1385_1387	c.486_488delCGC	c.(484-489)GCCGCT>GCT	p.162_163AA>A		NM_024496	NP_078772	Q9H1B7	I2BPL_HUMAN	chromosome 14 open reading frame 4	162_163	Poly-Ala.					nucleus					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.00347)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)		TTCCACCgcagcggcggcggcgg	0.581													7	251	---	---	---	---					
CHGA	1113	broad.mit.edu	37	14	93397759	93397761	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:93397759_93397761delGAG	uc001ybc.3	+	6	780_782	c.520_522delGAG	c.(520-522)GAGdel	p.E179del	CHGA_uc010aum.2_Intron|CHGA_uc001ybd.3_Intron	NM_001275	NP_001266	P10645	CMGA_HUMAN	chromogranin A precursor	179					regulation of blood pressure	extracellular region|stored secretory granule				skin(2)	2		all_cancers(154;0.0843)		Epithelial(152;0.102)|COAD - Colon adenocarcinoma(157;0.208)|all cancers(159;0.224)		TGGggaggaagaggaggaggagg	0.581													9	305	---	---	---	---					
DDX24	57062	broad.mit.edu	37	14	94545821	94545823	+	In_Frame_Del	DEL	CCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:94545821_94545823delCCT	uc001ycj.2	-	2	365_367	c.266_268delAGG	c.(265-270)GAGGGA>GGA	p.E89del	DDX24_uc010twq.1_In_Frame_Del_p.E46del|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	89	Poly-Glu.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		CTAGACTTTCCCTCCTCCTCCTC	0.443													12	1233	---	---	---	---					
TNFAIP2	7127	broad.mit.edu	37	14	103599784	103599786	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr14:103599784_103599786delAGC	uc001ymm.1	+	9	1762_1764	c.1631_1633delAGC	c.(1630-1635)GAGCAG>GAG	p.Q548del	TNFAIP2_uc010awo.1_Intron|TNFAIP2_uc010txz.1_In_Frame_Del_p.Q217del|TNFAIP2_uc010tya.1_In_Frame_Del_p.Q31del	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	548					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			AAGACGGCCGAGCAGCAGCAGCA	0.626													9	752	---	---	---	---					
C15orf24	56851	broad.mit.edu	37	15	34393991	34393993	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:34393991_34393993delAGC	uc001zhm.2	-	1	61_63	c.48_50delGCT	c.(46-51)CTGCTA>CTA	p.16_17LL>L	C15orf24_uc001zhn.2_5'UTR|PGBD4_uc001zho.2_5'Flank	NM_020154	NP_064539	Q9NPA0	CO024_HUMAN	chromosome 15 open reading frame 24 precursor	16_17						cytoplasm|integral to membrane	carbohydrate binding|carboxypeptidase activity|purine nucleotide binding				0		all_lung(180;1.76e-08)		all cancers(64;2.02e-17)|GBM - Glioblastoma multiforme(113;2.15e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		ATCCCCCGATAGCAGCAGCAGCA	0.665													8	1188	---	---	---	---					
SRP14	6727	broad.mit.edu	37	15	40328597	40328599	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:40328597_40328599delTGC	uc001zkq.2	-	5	418_420	c.346_348delGCA	c.(346-348)GCAdel	p.A116del	SRP14_uc001zkr.2_3'UTR|uc001zks.1_5'Flank	NM_003134	NP_003125	P37108	SRP14_HUMAN	signal recognition particle 14kDa (homologous	116	Ala/Thr-rich.				negative regulation of translational elongation|response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|endoplasmic reticulum signal peptide binding|protein binding				0		all_cancers(109;7.56e-18)|all_epithelial(112;4.02e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.84e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0505)		ctgcggcaggtgctgctgctgct	0.227													7	420	---	---	---	---					
MESDC2	23184	broad.mit.edu	37	15	81281974	81281976	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:81281974_81281976delCTT	uc002bfy.1	-	1	230_232	c.157_159delAAG	c.(157-159)AAGdel	p.K53del	MESDC2_uc002bfx.2_RNA|MESDC2_uc010uno.1_RNA	NM_015154	NP_055969	Q14696	MESD_HUMAN	mesoderm development candidate 2	53	Chaperone domain (By similarity).				mesoderm development|protein folding|Wnt receptor signaling pathway	endoplasmic reticulum					0						CGCGAATATCCTTCTTCTTCTTC	0.591													7	889	---	---	---	---					
GOLGA6L5	374650	broad.mit.edu	37	15	85055754	85055756	+	RNA	DEL	CTC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr15:85055754_85055756delCTC	uc002bkm.2	-	6		c.804_806delGAG				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CACGTAGCCTCTCCTCCTGTTCA	0.547													10	57	---	---	---	---					
C16orf79	283870	broad.mit.edu	37	16	2260586	2260588	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:2260586_2260588delCAG	uc010bsh.2	-	2	292_294	c.115_117delCTG	c.(115-117)CTGdel	p.L39del	C16orf79_uc002cpi.1_In_Frame_Del_p.L39del	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	39	Poly-Leu.|Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						CGGCcagcaccagcagcagcagc	0.562													7	383	---	---	---	---					
CREBBP	1387	broad.mit.edu	37	16	3778303	3778305	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:3778303_3778305delGCT	uc002cvv.2	-	31	6947_6949	c.6743_6745delAGC	c.(6742-6747)CAGCGC>CGC	p.Q2248del	CREBBP_uc002cvw.2_In_Frame_Del_p.Q2210del	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	2248	Poly-Gln.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGCTGCATGCGCTGCTGCTGCTG	0.685			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				8	453	---	---	---	---					
LOC100132247	100132247	broad.mit.edu	37	16	22546050	22546051	+	In_Frame_Ins	INS	-	ATA	ATA			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:22546050_22546051insATA	uc010bxg.2	+	9	1928_1929	c.1746_1747insATA	c.(1744-1749)insATA	p.583_584insI	LOC100132247_uc010vbv.1_In_Frame_Ins_p.583_584insI|LOC100132247_uc010vbw.1_Intron|LOC100132247_uc010bxi.2_In_Frame_Ins_p.564_565insI|LOC100132247_uc010bxk.2_In_Frame_Ins_p.400_401insI|uc010vbx.1_5'Flank|uc002dky.1_5'Flank	NM_001135865	NP_001129337	A8MRT5	K220L_HUMAN	hypothetical protein LOC100132247	583_584	Pro-rich.					integral to membrane					0						CTCAGCGGATGATCTCAAGACA	0.550													7	186	---	---	---	---					
USP31	57478	broad.mit.edu	37	16	23079694	23079695	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:23079694_23079695delAA	uc002dll.2	-	16	3731_3732	c.3731_3732delTT	c.(3730-3732)CTTfs	p.L1244fs	USP31_uc002dlk.2_Frame_Shift_Del_p.L516fs|USP31_uc010vca.1_Frame_Shift_Del_p.L547fs|USP31_uc010bxm.2_Frame_Shift_Del_p.L532fs	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1244					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CTGTCTTGCCAAGATCCGTCGA	0.545													526	1096	---	---	---	---					
UBFD1	56061	broad.mit.edu	37	16	23569076	23569076	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:23569076delG	uc002dlv.2	+	1	215	c.13delG	c.(13-15)GGGfs	p.G5fs	EARS2_uc002dls.3_5'Flank|EARS2_uc002dlt.3_5'Flank|EARS2_uc002dlu.2_5'Flank	NM_019116	NP_061989	O14562	UBFD1_HUMAN	ubiquitin-binding protein homolog	5											0				GBM - Glioblastoma multiforme(48;0.0331)		GGCGGCGGCCGGGGCCCCGGA	0.582													10	35	---	---	---	---					
IRX6	79190	broad.mit.edu	37	16	55362674	55362676	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:55362674_55362676delGAG	uc002ehy.2	+	5	1317_1319	c.784_786delGAG	c.(784-786)GAGdel	p.E268del	IRX6_uc002ehx.2_In_Frame_Del_p.E268del	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	268						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						CCTggaggaagaggaggaggagg	0.493													21	809	---	---	---	---					
COQ9	57017	broad.mit.edu	37	16	57486732	57486734	+	In_Frame_Del	DEL	GAG	-	-	rs149029279		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:57486732_57486734delGAG	uc002elq.2	+	3	278_280	c.262_264delGAG	c.(262-264)GAGdel	p.E91del	COQ9_uc002elp.1_In_Frame_Del_p.E91del|COQ9_uc010vhn.1_In_Frame_Del_p.E91del|COQ9_uc010vho.1_In_Frame_Del_p.E91del|COQ9_uc010vhp.1_In_Frame_Del_p.E91del|COQ9_uc002elr.2_In_Frame_Del_p.E91del	NM_020312	NP_064708	O75208	COQ9_HUMAN	coenzyme Q9 homolog precursor	91					ubiquinone biosynthetic process	mitochondrion				breast(1)	1						CCAGGGCGGCGAGGAGGAGGAGG	0.576													8	1141	---	---	---	---					
CCDC135	84229	broad.mit.edu	37	16	57731885	57731887	+	In_Frame_Del	DEL	GGA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:57731885_57731887delGGA	uc002emi.2	+	2	113_115	c.24_26delGGA	c.(22-27)GTGGAG>GTG	p.E13del	CCDC135_uc002emj.2_In_Frame_Del_p.E13del|CCDC135_uc002emk.2_In_Frame_Del_p.E13del	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	13	Potential.					cytoplasm				central_nervous_system(1)	1						Gggagaaggtggaggaggaggag	0.448													10	451	---	---	---	---					
MIR328	442901	broad.mit.edu	37	16	67236285	67236286	+	RNA	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:67236285_67236286insC	hsa-mir-328|MI0000804	-			c.13_14insC			ELMO3_uc002esa.2_Intron|ELMO3_uc002esb.2_Intron|ELMO3_uc002esc.2_Intron|uc010vjf.1_RNA																	0						AGCCCCTCCTGCCCCCCCACTC	0.629													7	1228	---	---	---	---					
ZFHX3	463	broad.mit.edu	37	16	72991713	72991715	+	In_Frame_Del	DEL	CCA	-	-	rs4788682	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:72991713_72991715delCCA	uc002fck.2	-	2	3003_3005	c.2330_2332delTGG	c.(2329-2334)GTGGCT>GCT	p.V777del	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	777	Poly-Ala.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				gccgccgcagccaccgccgccgc	0.458													18	772	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	74425400	74425402	+	In_Frame_Del	DEL	CAA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:74425400_74425402delCAA	uc010vmt.1	+	6	572_574	c.571_573delCAA	c.(571-573)CAAdel	p.Q192del						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		TCCTCCAACTCAACAACATTCTA	0.517													11	577	---	---	---	---					
MBTPS1	8720	broad.mit.edu	37	16	84103645	84103646	+	Splice_Site	INS	-	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr16:84103645_84103646insA	uc002fhi.2	-	14	2285	c.1783_splice	c.e14-1	p.S595_splice	MBTPS1_uc002fhh.2_Splice_Site_p.S99_splice	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1						cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						ATTTTTTGACTAAAAAAAAAGA	0.366													11	481	---	---	---	---					
GGNBP2	79893	broad.mit.edu	37	17	34943645	34943645	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:34943645delA	uc002hnb.2	+	13	2109	c.1860delA	c.(1858-1860)GGAfs	p.G620fs		NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	620					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		CCGATTCCGGAAAAGGTGCCA	0.468													8	1967	---	---	---	---					
CSF3	1440	broad.mit.edu	37	17	38172769	38172769	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:38172769delT	uc002htp.2	+	4	384	c.344delT	c.(343-345)CTTfs	p.L115fs	CSF3_uc002hto.2_Frame_Shift_Del_p.L112fs|CSF3_uc002htq.2_Frame_Shift_Del_p.L108fs|CSF3_uc010wep.1_Frame_Shift_Del_p.L72fs	NM_000759	NP_000750	P09919	CSF3_HUMAN	colony stimulating factor 3 isoform a precursor	115					cytokine-mediated signaling pathway|granulocyte differentiation|immune response|positive regulation of cell proliferation	extracellular space	cytokine activity|enzyme binding|granulocyte colony-stimulating factor receptor binding|growth factor activity			ovary(1)	1	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CATAGCGGCCTTTTCCTCTAC	0.627													7	1985	---	---	---	---					
KRT10	3858	broad.mit.edu	37	17	38978766	38978768	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:38978766_38978768delTCC	uc002hvi.2	-	1	96_98	c.70_72delGGA	c.(70-72)GGAdel	p.G24del	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	24	Head.|Gly-rich.			Missing (in Ref. 1; AAA60544).	epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				ctcctccacatcctcctcctcct	0.409													17	316	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:45219612delA	uc002ild.3	-	11	1488	c.1361delT	c.(1360-1362)CTAfs	p.L454fs	CDC27_uc002ile.3_Frame_Shift_Del_p.L460fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.L454fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.L393fs|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGCTTTTTGTAGATTAAAGGC	0.308													21	126	---	---	---	---					
TOB1	10140	broad.mit.edu	37	17	48940610	48940612	+	In_Frame_Del	DEL	GTG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:48940610_48940612delGTG	uc002isw.2	-	1	802_804	c.767_769delCAC	c.(766-771)CCACAG>CAG	p.P256del	TOB1_uc010wmy.1_In_Frame_Del_p.P256del|TOB1_uc010wmz.1_In_Frame_Del_p.P256del	NM_005749	NP_005740	P50616	TOB1_HUMAN	transducer of ERBB2, 1	256	Poly-Pro.				negative regulation of cell proliferation		SH3/SH2 adaptor activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			tgttgctgctgtggtggtggtgg	0.261													10	483	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61899155	61899157	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:61899155_61899157delCTC	uc002jbz.2	-	14	1600_1602	c.1522_1524delGAG	c.(1522-1524)GAGdel	p.E508del	FTSJ3_uc002jca.2_In_Frame_Del_p.E508del	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	508					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						GCAGTGGATTCTCCTCCTCCTCC	0.537													8	1123	---	---	---	---					
CDC42EP4	23580	broad.mit.edu	37	17	71281585	71281587	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:71281585_71281587delTCC	uc002jjn.2	-	2	1200_1202	c.1053_1055delGGA	c.(1051-1056)GAGGAT>GAT	p.E351del	CDC42EP4_uc002jjo.2_In_Frame_Del_p.E351del|CDC42EP4_uc002jjp.1_In_Frame_Del_p.E281del	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	351					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			ACGGATTTCATCCTCCTCCTCCT	0.640													7	1014	---	---	---	---					
CBX4	8535	broad.mit.edu	37	17	77808241	77808243	+	In_Frame_Del	DEL	GTG	-	-	rs3833850		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:77808241_77808243delGTG	uc002jxe.2	-	5	1361_1363	c.1198_1200delCAC	c.(1198-1200)CACdel	p.H400del		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	400	His-rich.|Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GGCCGACGGCgtggtggtggtgg	0.507													7	153	---	---	---	---					
SGSH	6448	broad.mit.edu	37	17	78184301	78184301	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr17:78184301delG	uc002jxz.3	-	8	1546	c.1459delC	c.(1459-1461)CTGfs	p.L487fs	SGSH_uc002jya.3_Frame_Shift_Del_p.L284fs|SGSH_uc002jxy.2_3'UTR	NM_000199	NP_000190	P51688	SPHM_HUMAN	N-sulfoglucosamine sulfohydrolase precursor	487					proteoglycan metabolic process	lysosome	metal ion binding|N-sulfoglucosamine sulfohydrolase activity|sulfuric ester hydrolase activity			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			TTCTCCTCCAGGACGCCGTCG	0.652													105	197	---	---	---	---					
KLHL14	57565	broad.mit.edu	37	18	30350137	30350161	+	Frame_Shift_Del	DEL	CGAGCACCAGGCGCAGCCCGATGGA	-	-	rs139808282		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:30350137_30350161delCGAGCACCAGGCGCAGCCCGATGGA	uc002kxm.1	-	2	782_806	c.394_418delTCCATCGGGCTGCGCCTGGTGCTCG	c.(394-420)TCCATCGGGCTGCGCCTGGTGCTCGAGfs	p.S132fs		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	132_140	BTB.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TAGAGGTACTCGAGCACCAGGCGCAGCCCGATGGACGAGCAGCCC	0.622													102	1120	---	---	---	---					
ONECUT2	9480	broad.mit.edu	37	18	55103477	55103479	+	In_Frame_Del	DEL	CAC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr18:55103477_55103479delCAC	uc002lgo.2	+	1	561_563	c.529_531delCAC	c.(529-531)CACdel	p.H184del		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	184	Poly-His.				organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		ccaccatccgcaccaccaccacc	0.473													8	143	---	---	---	---					
SBNO2	22904	broad.mit.edu	37	19	1108827	1108829	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:1108827_1108829delGCT	uc002lrk.3	-	31	3803_3805	c.3565_3567delAGC	c.(3565-3567)AGCdel	p.S1189del	SBNO2_uc002lri.3_5'UTR|SBNO2_uc002lrj.3_In_Frame_Del_p.S1132del|SBNO2_uc010dse.2_In_Frame_Del_p.S1172del|SBNO2_uc010xgj.1_Intron	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	1189					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTGCAGGTAGCTGCTGCTGCTG	0.724													7	312	---	---	---	---					
DNMT1	1786	broad.mit.edu	37	19	10262139	10262139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:10262139delT	uc002mng.2	-	23	2332	c.2152delA	c.(2152-2154)ATGfs	p.M718fs	DNMT1_uc010xlc.1_Frame_Shift_Del_p.M734fs|DNMT1_uc002mnh.2_Frame_Shift_Del_p.M613fs|DNMT1_uc010xld.1_Frame_Shift_Del_p.M718fs	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	718					chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	CCCTGGTGCATTTTTTTGGGT	0.507													8	1179	---	---	---	---					
YIPF2	78992	broad.mit.edu	37	19	11038362	11038364	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:11038362_11038364delGCT	uc002mqb.2	-	4	345_347	c.221_223delAGC	c.(220-225)CAGCCG>CCG	p.Q74del	YIPF2_uc002mqc.2_In_Frame_Del_p.Q74del|C19orf52_uc002mqd.1_5'Flank	NM_024029	NP_076934	Q9BWQ6	YIPF2_HUMAN	Yip1 domain family, member 2	74	Cytoplasmic (Potential).					integral to membrane|transport vesicle					0						CAGAATCCCGgctgctgctgctg	0.532													15	608	---	---	---	---					
ELAVL3	1995	broad.mit.edu	37	19	11577605	11577605	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:11577605delC	uc002mry.1	-	2	427	c.47delG	c.(46-48)GGCfs	p.G16fs	ELAVL3_uc002mrx.1_Frame_Shift_Del_p.G16fs	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	16					cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						gccggccgggcccccccccAC	0.522													8	167	---	---	---	---					
SLC27A1	376497	broad.mit.edu	37	19	17599665	17599683	+	Frame_Shift_Del	DEL	GCATGGCAGCCTTCGGCCA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:17599665_17599683delGCATGGCAGCCTTCGGCCA	uc002ngu.1	+	5	853_871	c.803_821delGCATGGCAGCCTTCGGCCA	c.(802-822)CGCATGGCAGCCTTCGGCCACfs	p.R268fs	SLC27A1_uc002ngt.1_Translation_Start_Site|SLC27A1_uc010xpp.1_Frame_Shift_Del_p.R89fs	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	268_274	Sufficient for oligomerization (By similarity).|Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0						AGGTACTACCGCATGGCAGCCTTCGGCCACCACGCCTAC	0.635													39	220	---	---	---	---					
SPRED3	399473	broad.mit.edu	37	19	38882864	38882866	+	In_Frame_Del	DEL	CCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:38882864_38882866delCCT	uc002oim.2	+	3	363_365	c.359_361delCCT	c.(358-363)CCCTCC>CCC	p.S128del	SPRED3_uc002oil.1_In_Frame_Del_p.S128del	NM_001042522	NP_001035987	Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3	128	Ser-rich.				multicellular organismal development					central_nervous_system(2)|lung(1)|skin(1)	4	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCACTCAccccctcctcctcctc	0.537													10	239	---	---	---	---					
PVRL2	5819	broad.mit.edu	37	19	45349842	45349844	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:45349842_45349844delGCT	uc002ozw.1	+	1	450_452	c.60_62delGCT	c.(58-63)CCGCTG>CCG	p.L27del	PVRL2_uc002ozv.2_In_Frame_Del_p.L27del	NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	27					adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		tgctgtggccgctgctgctgctg	0.626													8	557	---	---	---	---					
PTH2	113091	broad.mit.edu	37	19	49926531	49926533	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:49926531_49926533delCAG	uc002pnn.1	-	1	166_168	c.64_66delCTG	c.(64-66)CTGdel	p.L22del		NM_178449	NP_848544	Q96A98	TIP39_HUMAN	parathyroid hormone 2 preproprotein	22					neuropeptide signaling pathway	extracellular region					0				OV - Ovarian serous cystadenocarcinoma(262;0.0015)|GBM - Glioblastoma multiforme(486;0.044)|Lung(386;0.0785)|LUSC - Lung squamous cell carcinoma(496;0.0836)		AGGGCACCACcagcagcagcagc	0.596													13	382	---	---	---	---					
TMC4	147798	broad.mit.edu	37	19	54675747	54675749	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:54675747_54675749delTCC	uc010erf.2	-	2	333_335	c.201_203delGGA	c.(199-204)GAGGAT>GAT	p.E67del	TMC4_uc002qdo.2_In_Frame_Del_p.E61del	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	67	Poly-Glu.|Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCTTCCTCCATCCTCCTCCTCCT	0.645													9	815	---	---	---	---					
SYT5	6861	broad.mit.edu	37	19	55685979	55685979	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:55685979delT	uc002qjm.1	-	7	1926	c.866delA	c.(865-867)AAGfs	p.K289fs	SYT5_uc002qjp.2_Frame_Shift_Del_p.K285fs|SYT5_uc002qjn.1_Frame_Shift_Del_p.K289fs|SYT5_uc002qjo.1_Frame_Shift_Del_p.K288fs	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	289	Cytoplasmic (Potential).|C2 2.				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CTTCCGCACCTTTTTGCCGCC	0.527													9	1642	---	---	---	---					
ZFP28	140612	broad.mit.edu	37	19	57050569	57050570	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:57050569_57050570insG	uc002qnj.2	+	1	253_254	c.182_183insG	c.(181-183)GCGfs	p.A61fs	ZFP28_uc002qni.2_Frame_Shift_Ins_p.A61fs	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	61					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		CAGCGAGGAGCGGCCCCTACGG	0.673													9	127	---	---	---	---					
ZNF416	55659	broad.mit.edu	37	19	58084579	58084579	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:58084579delA	uc002qpf.2	-	4	864	c.693delT	c.(691-693)TTTfs	p.F231fs	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	231					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		CTCTAGGGTGAAAAAAAGTGT	0.453													8	1243	---	---	---	---					
ZNF274	10782	broad.mit.edu	37	19	58723974	58723974	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr19:58723974delA	uc002qrq.1	+	10	1886	c.1427delA	c.(1426-1428)CAAfs	p.Q476fs	ZNF274_uc002qrr.1_Frame_Shift_Del_p.Q444fs|ZNF274_uc002qrs.1_Frame_Shift_Del_p.Q371fs|ZNF274_uc010eum.1_Frame_Shift_Del_p.Q235fs	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	476					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TGTGAAAGGCAAAAGGCCAAG	0.398													7	1131	---	---	---	---					
ATP6V1C2	245973	broad.mit.edu	37	2	10917819	10917820	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:10917819_10917820delAG	uc002ras.2	+	11	1043_1044	c.934_935delAG	c.(934-936)AGAfs	p.R312fs	ATP6V1C2_uc002rat.2_Intron	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	312					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		GCAGACCGACAGAGAGAGAGAG	0.604													11	994	---	---	---	---					
KLRAQ1	129285	broad.mit.edu	37	2	48692631	48692631	+	Splice_Site	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:48692631delG	uc002rwm.2	+	9	933	c.748_splice	c.e9-1	p.L250_splice	KLRAQ1_uc002rwi.1_Splice_Site_p.L250_splice|KLRAQ1_uc002rwj.2_Splice_Site_p.L250_splice|KLRAQ1_uc002rwl.2_Splice_Site_p.L204_splice|KLRAQ1_uc002rwk.2_Splice_Site_p.L250_splice|KLRAQ1_uc010yok.1_Splice_Site_p.L250_splice	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1											ovary(1)	1						TCATTTTAAAGCTGAAGATGC	0.368													28	76	---	---	---	---					
DYSF	8291	broad.mit.edu	37	2	71801420	71801422	+	In_Frame_Del	DEL	CCG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:71801420_71801422delCCG	uc002sie.2	+	30	3643_3645	c.3267_3269delCCG	c.(3265-3270)TTCCGC>TTC	p.R1093del	DYSF_uc010feg.2_In_Frame_Del_p.R1124del|DYSF_uc010feh.2_In_Frame_Del_p.R1079del|DYSF_uc002sig.3_In_Frame_Del_p.R1079del|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_In_Frame_Del_p.R1093del|DYSF_uc010fef.2_In_Frame_Del_p.R1110del|DYSF_uc010fei.2_In_Frame_Del_p.R1110del|DYSF_uc010fek.2_In_Frame_Del_p.R1111del|DYSF_uc010fej.2_In_Frame_Del_p.R1080del|DYSF_uc010fel.2_In_Frame_Del_p.R1080del|DYSF_uc010feo.2_In_Frame_Del_p.R1125del|DYSF_uc010fem.2_In_Frame_Del_p.R1094del|DYSF_uc010fen.2_In_Frame_Del_p.R1111del|DYSF_uc002sif.2_In_Frame_Del_p.R1094del|DYSF_uc010yqy.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1093	Cytoplasmic (Potential).|Arg-rich.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CAGATGCCTTCCGCCGCCGCCGC	0.655													12	1472	---	---	---	---					
WBP1	23559	broad.mit.edu	37	2	74687542	74687543	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:74687542_74687543insC	uc002slj.1	+	4	697_698	c.544_545insC	c.(544-546)GCCfs	p.A182fs	WBP1_uc002slh.1_RNA|INO80B_uc002sli.1_RNA|WBP1_uc002slk.1_Frame_Shift_Ins_p.A179fs|WBP1_uc002sll.1_RNA	NM_012477	NP_036609	Q96G27	WBP1_HUMAN	WW domain binding protein 1	182							WW domain binding				0						CCACCAGAGTGCCCCCCCTCAT	0.604													8	1310	---	---	---	---					
TEKT4	150483	broad.mit.edu	37	2	95539829	95539830	+	Frame_Shift_Ins	INS	-	G	G	rs35031477		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:95539829_95539830insG	uc002stw.1	+	3	782_783	c.689_690insG	c.(688-690)CCGfs	p.P230fs	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	230					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						CAGGCTCATCCGTACTCCACCA	0.663													10	904	---	---	---	---					
ITPRIPL1	150771	broad.mit.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:96992793_96992795delGAG	uc002svx.2	+	3	759_761	c.424_426delGAG	c.(424-426)GAGdel	p.E147del	ITPRIPL1_uc010yuk.1_In_Frame_Del_p.E139del|ITPRIPL1_uc002svy.2_In_Frame_Del_p.E155del|ITPRIPL1_uc010yul.1_In_Frame_Del_p.E139del	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	147	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						TTCCAGCAGTGAGGAGGAGGAGG	0.532													18	875	---	---	---	---					
AFF3	3899	broad.mit.edu	37	2	100218011	100218013	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:100218011_100218013delGCT	uc002tag.2	-	13	1491_1493	c.1255_1257delAGC	c.(1255-1257)AGCdel	p.S419del	AFF3_uc002taf.2_In_Frame_Del_p.S444del|AFF3_uc010fiq.1_In_Frame_Del_p.S419del|AFF3_uc010yvr.1_In_Frame_Del_p.S572del|AFF3_uc002tah.1_In_Frame_Del_p.S444del	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	419	Poly-Ser.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						tgctgctgccgctgctgctgctg	0.562													8	219	---	---	---	---					
AQP12A	375318	broad.mit.edu	37	2	241631786	241631786	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr2:241631786delG	uc002vzu.2	+	2	488	c.419delG	c.(418-420)AGCfs	p.S140fs	AQP12A_uc002vzv.2_RNA	NM_198998	NP_945349	Q8IXF9	AQ12A_HUMAN	aquaporin 12A	140						integral to membrane	transporter activity				0		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		CAGAGCTGCAGCTCGGCCCTG	0.692													9	124	---	---	---	---					
CD93	22918	broad.mit.edu	37	20	23066789	23066791	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:23066789_23066791delAGC	uc002wsv.2	-	1	187_189	c.39_41delGCT	c.(37-42)CTGCTC>CTC	p.13_14LL>L		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	13_14					cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CTGGGTcaggagcagcagcagca	0.621													7	96	---	---	---	---					
ZNF217	7764	broad.mit.edu	37	20	52198641	52198642	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr20:52198641_52198642insT	uc002xwq.3	-	1	995_996	c.724_725insA	c.(724-726)ACTfs	p.T242fs	ZNF217_uc010gij.1_Frame_Shift_Ins_p.T234fs	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	242					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			ACCGAAAGCAGTTTTTTTGGTG	0.480													7	1357	---	---	---	---					
MED15	51586	broad.mit.edu	37	22	20918817	20918819	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:20918817_20918819delCAG	uc002zsp.2	+	6	612_614	c.532_534delCAG	c.(532-534)CAGdel	p.Q188del	MED15_uc002zsn.1_In_Frame_Del_p.Q107del|MED15_uc002zso.2_In_Frame_Del_p.Q117del|MED15_uc002zsq.2_In_Frame_Del_p.Q188del|MED15_uc010gso.2_In_Frame_Del_p.Q188del|MED15_uc002zsr.2_In_Frame_Del_p.Q162del|MED15_uc011ahs.1_In_Frame_Del_p.Q162del|MED15_uc011aht.1_In_Frame_Del_p.Q162del|MED15_uc002zss.2_In_Frame_Del_p.Q107del|MED15_uc011ahu.1_5'Flank	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	188	Poly-Gln.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			ggcggcgctacagcagcagcagc	0.148											OREG0026319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	172	---	---	---	---					
MED15	51586	broad.mit.edu	37	22	20918916	20918918	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:20918916_20918918delCAG	uc002zsp.2	+	6	711_713	c.631_633delCAG	c.(631-633)CAGdel	p.Q218del	MED15_uc002zsn.1_In_Frame_Del_p.Q137del|MED15_uc002zso.2_In_Frame_Del_p.Q147del|MED15_uc002zsq.2_In_Frame_Del_p.Q218del|MED15_uc010gso.2_In_Frame_Del_p.Q218del|MED15_uc002zsr.2_In_Frame_Del_p.Q192del|MED15_uc011ahs.1_In_Frame_Del_p.Q192del|MED15_uc011aht.1_In_Frame_Del_p.Q192del|MED15_uc002zss.2_In_Frame_Del_p.Q137del|MED15_uc011ahu.1_5'Flank	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	218	Poly-Gln.			Missing (in Ref. 4; CAG30423).	regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			gcagcagctccagcagcagcagc	0.187											OREG0026319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	251	---	---	---	---					
ZNRF3	84133	broad.mit.edu	37	22	29445819	29445821	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:29445819_29445821delCAG	uc003aeg.2	+	8	1515_1517	c.1350_1352delCAG	c.(1348-1353)GACAGC>GAC	p.S457del	ZNRF3_uc003aeh.1_In_Frame_Del_p.S457del	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	557	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CAGgcagcgacagcagcagcagc	0.571													11	455	---	---	---	---					
TRIOBP	11078	broad.mit.edu	37	22	38119882	38119884	+	In_Frame_Del	DEL	CCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:38119882_38119884delCCT	uc003atr.2	+	7	1590_1592	c.1319_1321delCCT	c.(1318-1323)GCCTCC>GCC	p.S442del	TRIOBP_uc003atu.2_In_Frame_Del_p.S270del|TRIOBP_uc003atq.1_In_Frame_Del_p.S442del|TRIOBP_uc003ats.1_In_Frame_Del_p.S270del	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	442					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AATCCCAGAGCCTCCTCTCCCAG	0.601													14	743	---	---	---	---					
FAM109B	150368	broad.mit.edu	37	22	42473377	42473377	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:42473377delG	uc003bbz.2	+	3	267	c.80delG	c.(79-81)TGGfs	p.W27fs	C22orf32_uc003bca.2_5'Flank	NM_001002034	NP_001002034	Q6ICB4	SESQ2_HUMAN	hypothetical protein LOC150368	27	PH.				endosome organization|receptor recycling|retrograde transport, endosome to Golgi	clathrin-coated vesicle|early endosome|recycling endosome|trans-Golgi network	protein homodimerization activity				0						CTGCGCACCTGGGGGGGCCCA	0.632													7	1160	---	---	---	---					
C22orf32	91689	broad.mit.edu	37	22	42478046	42478048	+	In_Frame_Del	DEL	GAT	-	-	rs141840500		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:42478046_42478048delGAT	uc003bca.2	+	2	378_380	c.304_306delGAT	c.(304-306)GATdel	p.D107del		NM_033318	NP_201575	Q9H4I9	CV032_HUMAN	hypothetical protein LOC91689 precursor	107	Asp/Glu-rich.					integral to membrane|mitochondrion				ovary(1)	1						TGTTCCAGAGGATGATGATGATG	0.478													18	1241	---	---	---	---					
TCF20	6942	broad.mit.edu	37	22	42610776	42610778	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:42610776_42610778delTGC	uc003bcj.1	-	1	668_670	c.534_536delGCA	c.(532-537)CAGCAA>CAA	p.178_179QQ>Q	TCF20_uc003bck.1_In_Frame_Del_p.178_179QQ>Q|TCF20_uc003bnt.2_In_Frame_Del_p.178_179QQ>Q	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	178_179	Poly-Gln.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CTGCTGGACTTGCTGCTGCTGCT	0.571													10	407	---	---	---	---					
BRD1	23774	broad.mit.edu	37	22	50216671	50216671	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr22:50216671delT	uc003biv.2	-	1	1782	c.1295delA	c.(1294-1296)AAGfs	p.K432fs	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Frame_Shift_Del_p.K432fs|BRD1_uc011arh.1_Frame_Shift_Del_p.K432fs|BRD1_uc003biu.3_Frame_Shift_Del_p.K432fs	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	432					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TTTCTTAGCCTTTTTTGCCTT	0.517													7	2011	---	---	---	---					
MST1	4485	broad.mit.edu	37	3	49723112	49723112	+	Frame_Shift_Del	DEL	T	-	-	rs11288337		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:49723112delT	uc003cxg.2	-	11	1376	c.1304delA	c.(1303-1305)AACfs	p.N435fs	MST1_uc011bcs.1_Frame_Shift_Del_p.T474fs	NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	421	Kringle 4.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CCCATCTGGGTTCCGGCAGAA	0.587													15	616	---	---	---	---					
RBM15B	29890	broad.mit.edu	37	3	51430738	51430738	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:51430738delC	uc003dbd.2	+	1	2008	c.1908delC	c.(1906-1908)CGCfs	p.R636fs		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	636					interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AGCGCAGCCGCAAGGAGAACC	0.632													80	111	---	---	---	---					
PRKCD	5580	broad.mit.edu	37	3	53220653	53220653	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:53220653delG	uc003dgl.2	+	14	1647	c.1294delG	c.(1294-1296)GGGfs	p.G432fs	PRKCD_uc003dgm.2_Frame_Shift_Del_p.G432fs	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	432	Protein kinase.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		GTTCCTCAACGGGGGGGACCT	0.602													14	2591	---	---	---	---					
UROC1	131669	broad.mit.edu	37	3	126220106	126220106	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:126220106delT	uc003eiz.1	-	10	952	c.920delA	c.(919-921)AAGfs	p.K307fs	UROC1_uc010hsi.1_Frame_Shift_Del_p.K367fs	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	307					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		GAGCACCTCCTTTTTTTTCCT	0.587													9	1434	---	---	---	---					
H1FOO	132243	broad.mit.edu	37	3	129268107	129268108	+	Frame_Shift_Ins	INS	-	A	A	rs150160917	by1000genomes	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:129268107_129268108insA	uc003emu.2	+	3	647_648	c.642_643insA	c.(640-645)GCTAGGfs	p.A214fs	H1FOO_uc003emv.2_Frame_Shift_Ins_p.A75fs	NM_153833	NP_722575	Q8IZA3	H1FOO_HUMAN	H1 histone family, member O, oocyte-specific	214_215					meiosis|nucleosome assembly	cytoplasm|nucleosome	DNA binding			skin(1)	1						CGGGAGAGGCTAGGAAGGTGCC	0.653													7	266	---	---	---	---					
AGTR1	185	broad.mit.edu	37	3	148459229	148459229	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:148459229delC	uc003ewg.2	+	4	853	c.407delC	c.(406-408)TCCfs	p.S136fs	AGTR1_uc003ewh.2_Frame_Shift_Del_p.S136fs|AGTR1_uc003ewi.2_Frame_Shift_Del_p.S136fs|AGTR1_uc003ewj.2_Frame_Shift_Del_p.S136fs|AGTR1_uc003ewk.2_Frame_Shift_Del_p.S136fs	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	136	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	CCAATGAAGTCCCGCCTTCGA	0.488													81	193	---	---	---	---					
SHOX2	6474	broad.mit.edu	37	3	157815841	157815841	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:157815841delT	uc003fbr.2	-	5	1110	c.971delA	c.(970-972)AAGfs	p.K324fs	SHOX2_uc003fbs.2_Frame_Shift_Del_p.K348fs|SHOX2_uc010hvw.2_Frame_Shift_Del_p.K312fs	NM_006884	NP_006875	O60902	SHOX2_HUMAN	short stature homeobox 2 isoform a	324	OAR.				nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			Lung(72;0.00318)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TGCGGCGTGCTTTTTGGCTTT	0.677													8	3662	---	---	---	---					
SCHIP1	29970	broad.mit.edu	37	3	159482272	159482274	+	In_Frame_Del	DEL	GCA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr3:159482272_159482274delGCA	uc003fcs.1	+	2	170_172	c.104_106delGCA	c.(103-108)GGCAGC>GGC	p.S41del	SCHIP1_uc003fcq.1_In_Frame_Del_p.S117del|SCHIP1_uc003fcr.1_In_Frame_Del_p.S30del|SCHIP1_uc003fct.1_In_Frame_Del_p.S41del|SCHIP1_uc010hvz.1_In_Frame_Del_p.S14del	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	41	Ser-rich.					cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			AGTGACGCCGgcagcagcagcag	0.567													7	184	---	---	---	---					
UTP3	57050	broad.mit.edu	37	4	71554620	71554622	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:71554620_71554622delGAG	uc003hfo.2	+	1	425_427	c.226_228delGAG	c.(226-228)GAGdel	p.E81del		NM_020368	NP_065101	Q9NQZ2	SAS10_HUMAN	UTP3, small subunit processome component	81	Glu-rich.				brain development|chromatin modification|gene silencing	nucleolus					0			Lung(101;0.235)			ggaggatggcgaggaggaggagg	0.291													9	279	---	---	---	---					
CDKL2	8999	broad.mit.edu	37	4	76539579	76539580	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:76539579_76539580insT	uc003hiq.2	-	3	747_748	c.222_223insA	c.(220-225)AAACGAfs	p.K74fs	CDKL2_uc011cbp.1_Frame_Shift_Ins_p.K74fs|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	74_75	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AGGTACCATCGTTTTTTTTTCT	0.322													10	540	---	---	---	---					
NAP1L5	266812	broad.mit.edu	37	4	89618484	89618486	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:89618484_89618486delTCC	uc003hrx.2	-	1	538_540	c.420_422delGGA	c.(418-423)GAGGAA>GAA	p.140_141EE>E	HERC3_uc003hrw.1_Intron|HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron	NM_153757	NP_715638	Q96NT1	NP1L5_HUMAN	nucleosome assembly protein 1-like 5	140_141	Glu-rich.				nucleosome assembly	nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000181)		gtactcctcttcctcctcctcct	0.369													12	638	---	---	---	---					
MAML3	55534	broad.mit.edu	37	4	140810639	140810641	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr4:140810639_140810641delGCT	uc003ihz.1	-	3	2689_2691	c.1937_1939delAGC	c.(1936-1941)CAGCCG>CCG	p.Q646del	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	646	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GGAGGTGGCGgctgctgctgctg	0.419													9	232	---	---	---	---					
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:6755013_6755014delAC	uc003jdx.1	+	13	1713_1714	c.1584_1585delAC	c.(1582-1587)AAACACfs	p.K528fs	PAPD7_uc011cmn.1_Frame_Shift_Del_p.K518fs|PAPD7_uc010itl.1_Frame_Shift_Del_p.K348fs	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	528_529					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						GGAGGAAAAAACACACACACAC	0.653													7	359	---	---	---	---					
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	GCC	GCC			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr5:112824048_112824049insGCC	uc003kql.3	-	1	479_480	c.63_64insGGC	c.(61-66)insGGC	p.21_22insG		NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		ctgctgccgctgccgccgccgc	0.391													13	77	---	---	---	---					
ATXN1	6310	broad.mit.edu	37	6	16327900	16327901	+	In_Frame_Ins	INS	-	TGC	TGC	rs71806515		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:16327900_16327901insTGC	uc003nbt.2	-	8	1612_1613	c.641_642insGCA	c.(640-642)CAG>CAGCAG	p.214_214Q>QQ	ATXN1_uc010jpi.2_In_Frame_Ins_p.214_214Q>QQ|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	214	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				gctgctgctgctgctgctgatg	0.381													13	201	---	---	---	---					
RBM24	221662	broad.mit.edu	37	6	17292126	17292128	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:17292126_17292128delGCT	uc003nbz.3	+	4	491_493	c.487_489delGCT	c.(487-489)GCTdel	p.A172del	RBM24_uc003nby.3_3'UTR|RBM24_uc011dix.1_In_Frame_Del_p.A114del|RBM24_uc003nca.2_In_Frame_Del_p.A127del|RBM24_uc011diy.1_In_Frame_Del_p.L80del|RBM24_uc011diz.1_In_Frame_Del_p.L65del	NM_001143942	NP_001137414	Q9BX46	RBM24_HUMAN	RNA binding motif protein 24 isoform 1	172	Ala-rich.				cell differentiation|regulation of mRNA stability|regulation of myotube differentiation	cytoplasm|nucleus	mRNA 3'-UTR binding|nucleotide binding			ovary(1)|skin(1)	2	Breast(50;0.0615)|Ovarian(93;0.0733)	all_hematologic(90;0.062)	all cancers(50;0.131)|Epithelial(50;0.15)			ATACTCAGCAgctgctgctgctg	0.493													9	756	---	---	---	---					
DEK	7913	broad.mit.edu	37	6	18264079	18264081	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:18264079_18264081delTCC	uc003ncr.1	-	2	331_333	c.138_140delGGA	c.(136-141)GAGGAA>GAA	p.46_47EE>E	DEK_uc011djf.1_In_Frame_Del_p.46_47EE>E|DEK_uc011djg.1_RNA	NM_003472	NP_003463	P35659	DEK_HUMAN	DEK oncogene isoform 1	46_47	Asp/Glu-rich (highly acidic).				chromatin modification|regulation of transcription from RNA polymerase II promoter|signal transduction|transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|histone binding			kidney(1)	1	Ovarian(93;0.00769)|Breast(50;0.0495)	all_hematologic(90;0.053)	OV - Ovarian serous cystadenocarcinoma(7;0.00291)|all cancers(50;0.031)|Epithelial(50;0.0332)			CCCACCTTTTtcctcctcctcct	0.365			T	NUP214	AML								8	630	---	---	---	---					
KIAA1949	170954	broad.mit.edu	37	6	30653494	30653496	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:30653494_30653496delTGC	uc003nra.2	-	2	531_533	c.300_302delGCA	c.(298-303)CAGCAA>CAA	p.100_101QQ>Q	KIAA1949_uc003nrb.3_In_Frame_Del_p.100_101QQ>Q	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	100_101	Poly-Gln.					cytoplasm|cytoskeleton	actin binding				0						CCGTtgttgttgctgctgctgct	0.547													15	336	---	---	---	---					
DDR1	780	broad.mit.edu	37	6	30865226	30865227	+	Frame_Shift_Del	DEL	GT	-	-	rs149035593		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:30865226_30865227delGT	uc003nrr.2	+	16	2327_2328	c.2068_2069delGT	c.(2068-2070)GTGfs	p.V690fs	DDR1_uc010jse.2_Frame_Shift_Del_p.V653fs|DDR1_uc003nrq.2_Frame_Shift_Del_p.V653fs|DDR1_uc003nrs.2_Frame_Shift_Del_p.V690fs|DDR1_uc003nrt.2_Frame_Shift_Del_p.V653fs|DDR1_uc011dms.1_Frame_Shift_Del_p.V671fs|DDR1_uc003nru.2_Frame_Shift_Del_p.V653fs|DDR1_uc003nrv.2_Frame_Shift_Del_p.V696fs|DDR1_uc003nrw.1_Frame_Shift_Del_p.V425fs|DDR1_uc003nrz.1_Frame_Shift_Del_p.V15fs	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	690	Cytoplasmic (Potential).|Protein kinase.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	GCTGCTGGGCGTGTGTGTGCAG	0.540													7	819	---	---	---	---					
PRRT1	80863	broad.mit.edu	37	6	32118562	32118564	+	In_Frame_Del	DEL	GTG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:32118562_32118564delGTG	uc003nzt.2	-	2	255_257	c.139_141delCAC	c.(139-141)CACdel	p.H47del	PRRT1_uc003nzs.2_In_Frame_Del_p.H88del|PRRT1_uc003nzu.2_Intron|PPT2_uc003nzw.2_5'Flank	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	47	Poly-His.			H -> Y (in Ref. 1; BAB70821).	response to biotic stimulus	integral to membrane				breast(1)	1						ACtgatggtagtggtggtggtgg	0.621													13	3002	---	---	---	---					
C6orf127	340204	broad.mit.edu	37	6	35748905	35748907	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:35748905_35748907delGCT	uc003old.3	+	1	75_77	c.18_20delGCT	c.(16-21)TGGCTG>TGG	p.L10del		NM_001010886	NP_001010886	A2RUU4	CF127_HUMAN	hypothetical protein LOC340204 precursor	10					digestion|lipid catabolic process	extracellular region	enzyme activator activity			skin(1)	1						TACCCCAATGGCTGCTGCTGCTG	0.532													7	1171	---	---	---	---					
TRERF1	55809	broad.mit.edu	37	6	42196333	42196333	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:42196333delT	uc003osd.2	-	18	3916	c.3353delA	c.(3352-3354)AAGfs	p.K1118fs	TRERF1_uc011duq.1_Frame_Shift_Del_p.K1035fs|TRERF1_uc003osb.2_Frame_Shift_Del_p.K886fs|TRERF1_uc003osc.2_Frame_Shift_Del_p.K874fs|TRERF1_uc003ose.2_Frame_Shift_Del_p.K1138fs	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	1118	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTTCTGAGCCTTTTGCCTCTG	0.542													10	2522	---	---	---	---					
RUNX2	860	broad.mit.edu	37	6	45390446	45390448	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:45390446_45390448delCAG	uc011dvx.1	+	3	385_387	c.175_177delCAG	c.(175-177)CAGdel	p.Q71del	RUNX2_uc011dvy.1_In_Frame_Del_p.Q71del|RUNX2_uc003oxt.2_In_Frame_Del_p.Q57del	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	71	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						gcagcagcaacagcagcagcagc	0.276													7	767	---	---	---	---					
GSTA1	2938	broad.mit.edu	37	6	52664097	52664100	+	Splice_Site	DEL	TGAA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:52664097_52664100delTGAA	uc003paz.2	-	2	83	c.-29_splice	c.e2-1			NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1						glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	TCTCTAAGCCtgaatgaatgaatg	0.397													8	153	---	---	---	---					
MYO6	4646	broad.mit.edu	37	6	76599857	76599858	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:76599857_76599858insA	uc003pih.1	+	26	3021_3022	c.2742_2743insA	c.(2740-2745)CAGAAAfs	p.Q914fs	MYO6_uc003pig.1_Frame_Shift_Ins_p.Q914fs|MYO6_uc003pii.1_Frame_Shift_Ins_p.Q914fs	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	914_915	Potential.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		GTGCATTACAGAAAAAAAAACA	0.381													7	151	---	---	---	---					
IFNGR1	3459	broad.mit.edu	37	6	137519400	137519426	+	In_Frame_Del	DEL	TCAAAACCATTTCTGGAGTGATCACTC	-	-	rs144715018	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:137519400_137519426delTCAAAACCATTTCTGGAGTGATCACTC	uc003qho.2	-	7	1315_1341	c.1212_1238delGAGTGATCACTCCAGAAATGGTTTTGA	c.(1210-1239)GAGAGTGATCACTCCAGAAATGGTTTTGAT>GAT	p.ESDHSRNGF404del	IFNGR1_uc011edm.1_In_Frame_Del_p.ESDHSRNGF376del	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	404_412	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	GGAATCAGTATCAAAACCATTTCTGGAGTGATCACTCTCAGAACAAT	0.401													31	20	---	---	---	---					
OLIG3	167826	broad.mit.edu	37	6	137815210	137815212	+	In_Frame_Del	DEL	TGG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:137815210_137815212delTGG	uc003qhp.1	-	1	320_322	c.96_98delCCA	c.(94-99)CACCAG>CAG	p.H32del		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	32	Poly-His.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		ACGGCTCTCCtggtggtggtggt	0.502													11	681	---	---	---	---					
AGPAT4	56895	broad.mit.edu	37	6	161560589	161560589	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:161560589delG	uc003qtr.1	-	8	1134	c.907delC	c.(907-909)CGGfs	p.R303fs	AGPAT4_uc003qts.1_Frame_Shift_Del_p.R163fs|AGPAT4_uc011egb.1_Frame_Shift_Del_p.R141fs	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	303					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		CAGGGCCGCCGGGGGGGCACC	0.627													8	757	---	---	---	---					
TBP	6908	broad.mit.edu	37	6	170871047	170871049	+	In_Frame_Del	DEL	CAG	-	-	rs56241301		TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr6:170871047_170871049delCAG	uc003qxt.2	+	3	455_457	c.223_225delCAG	c.(223-225)CAGdel	p.Q95del	TBP_uc003qxu.2_In_Frame_Del_p.Q95del|TBP_uc011ehf.1_In_Frame_Del_p.Q75del|TBP_uc011ehg.1_In_Frame_Del_p.Q95del	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	95	Poly-Gln.		Missing.		cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		gcaacagcaacagcagcagcagc	0.163													10	180	---	---	---	---					
CARD11	84433	broad.mit.edu	37	7	2963941	2963943	+	In_Frame_Del	DEL	GGA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:2963941_2963943delGGA	uc003smv.2	-	15	2268_2270	c.1864_1866delTCC	c.(1864-1866)TCCdel	p.S622del		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	622					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CGGATTGGTGGGAGGAGGAGGAG	0.616			Mis		DLBCL								9	680	---	---	---	---					
ZDHHC4	55146	broad.mit.edu	37	7	6621848	6621849	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:6621848_6621849insT	uc003sqi.2	+	6	694_695	c.336_337insT	c.(334-339)CTGTTTfs	p.L112fs	ZDHHC4_uc003sqg.2_Frame_Shift_Ins_p.L112fs|ZDHHC4_uc003sql.2_Frame_Shift_Ins_p.L112fs|ZDHHC4_uc003sqh.2_Frame_Shift_Ins_p.L112fs|ZDHHC4_uc003sqj.2_Frame_Shift_Ins_p.L112fs|ZDHHC4_uc003sqk.2_Frame_Shift_Ins_p.L112fs|ZDHHC4_uc003sqm.2_Frame_Shift_Ins_p.L112fs	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	112_113	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		GTGTAAACCTGTTTTTTTTCAC	0.450													19	1909	---	---	---	---					
HOXA1	3198	broad.mit.edu	37	7	27135314	27135316	+	In_Frame_Del	DEL	CGA	-	-	rs10951154	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:27135314_27135316delCGA	uc003sye.2	-	1	310_312	c.216_218delTCG	c.(214-219)CATCAC>CAC	p.72_73HH>H	HOXA1_uc003syd.2_In_Frame_Del_p.72_73HH>H|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	72_73	Poly-His.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						Ctgggggtggcgatggtggtggt	0.527											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	12	644	---	---	---	---					
NEUROD6	63974	broad.mit.edu	37	7	31378634	31378635	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:31378634_31378635insT	uc003tch.2	-	2	601_602	c.248_249insA	c.(247-249)AAGfs	p.K83fs		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	83	Nuclear localization signal (Potential).				cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						GCTTTGTTGTCTTTTTTTTCCT	0.396													10	1745	---	---	---	---					
C7orf25	79020	broad.mit.edu	37	7	42949523	42949524	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:42949523_42949524delCT	uc003thw.2	-	2	1440_1441	c.976_977delAG	c.(976-978)AGGfs	p.R326fs	C7orf25_uc010kxq.2_Frame_Shift_Del_p.R326fs|C7orf25_uc003thx.3_Frame_Shift_Del_p.R384fs|C7orf25_uc010kxr.2_Frame_Shift_Del_p.R384fs	NM_024054	NP_076959	Q9BPX7	CG025_HUMAN	hypothetical protein LOC79020 b	326										skin(1)	1						CACAGTGGCCCTCTCTCTCTCC	0.455													11	1014	---	---	---	---					
STX1A	6804	broad.mit.edu	37	7	73123425	73123427	+	In_Frame_Del	DEL	CAT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:73123425_73123427delCAT	uc003tyx.2	-	2	83_85	c.56_58delATG	c.(55-60)GATGTC>GTC	p.D19del	STX1A_uc003tyy.2_In_Frame_Del_p.D19del|STX1A_uc010lbj.1_In_Frame_Del_p.D19del|hsa-mir-4284|MI0015893_5'Flank	NM_004603	NP_004594	Q16623	STX1A_HUMAN	syntaxin 1A isoform 1	19	Cytoplasmic (Potential).				energy reserve metabolic process|glutamate secretion|intracellular protein transport|regulation of insulin secretion	cell junction|extracellular region|integral to membrane|neuron projection|synaptic vesicle membrane|synaptosome	SNAP receptor activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				GTGACAGCGACATCATCATCATC	0.586													14	1468	---	---	---	---					
DTX2	113878	broad.mit.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	-	-	rs147779783	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:76112249delA	uc003uff.3	+	5	1249	c.693delA	c.(691-693)CCAfs	p.P231fs	DTX2_uc011kgk.1_Frame_Shift_Del_p.P140fs|DTX2_uc003ufg.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufh.3_Frame_Shift_Del_p.P231fs|DTX2_uc003ufj.3_Frame_Shift_Del_p.P231fs	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	231					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AGCACCCCCCACACAGGACCG	0.657													12	2578	---	---	---	---					
POMZP3	22932	broad.mit.edu	37	7	76254896	76254898	+	In_Frame_Del	DEL	TTC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:76254896_76254898delTTC	uc003uft.2	-	3	915_917	c.168_170delGAA	c.(166-171)AAGAAA>AAA	p.56_57KK>K	uc003ufs.1_Intron|POMZP3_uc003ufu.2_In_Frame_Del_p.56_57KK>K|POMZP3_uc003ufv.2_RNA|POMZP3_uc011kgm.1_RNA	NM_012230	NP_036362	Q6PJE2	POZP3_HUMAN	POMZP3 fusion protein isoform 1	56_57	Poly-Lys.										0		Myeloproliferative disorder(862;0.204)				CACTGTCCTTTTCTTCTTCTTCT	0.468													14	1891	---	---	---	---					
PMS2L11	441263	broad.mit.edu	37	7	76610355	76610356	+	RNA	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:76610355_76610356insC	uc003ufw.3	+	1		c.217_218insC			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						GCCCCCCAGCACCCCCCCCACA	0.644													9	465	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100281686	100281688	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:100281686_100281688delGCT	uc003uwg.1	-	15	2832_2834	c.1823_1825delAGC	c.(1822-1827)CAGCTC>CTC	p.Q608del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	608	Poly-Gln.|Gln-rich.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					AATGCCGTGAGCTGCTGCTGCTG	0.690													9	485	---	---	---	---					
WASL	8976	broad.mit.edu	37	7	123332873	123332875	+	In_Frame_Del	DEL	GGA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr7:123332873_123332875delGGA	uc003vkz.2	-	9	1201_1203	c.873_875delTCC	c.(871-876)CCTCCC>CCC	p.291_292PP>P		NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	291_292	Pro-rich.				actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						gtgtggagggggaggaggaggag	0.394													8	541	---	---	---	---					
SFTPC	6440	broad.mit.edu	37	8	22020159	22020161	+	In_Frame_Del	DEL	GTG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:22020159_22020161delGTG	uc003xax.3	+	2	273_275	c.115_117delGTG	c.(115-117)GTGdel	p.V44del	SFTPC_uc003xaw.3_In_Frame_Del_p.V93del|SFTPC_uc011kza.1_In_Frame_Del_p.V44del|SFTPC_uc003xaz.2_In_Frame_Del_p.V44del|SFTPC_uc003xay.3_In_Frame_Del_p.V44del|BMP1_uc011kzb.1_5'Flank|BMP1_uc003xba.2_5'Flank|BMP1_uc003xbb.2_5'Flank|BMP1_uc003xbe.2_5'Flank|BMP1_uc003xbc.2_5'Flank|BMP1_uc003xbd.2_5'Flank|BMP1_uc003xbf.2_5'Flank|BMP1_uc003xbg.2_5'Flank|BMP1_uc011kzc.1_5'Flank|BMP1_uc003xbh.2_5'Flank|BMP1_uc003xbi.2_5'Flank	NM_003018	NP_003009	P11686	PSPC_HUMAN	surfactant protein C precursor	44					respiratory gaseous exchange	extracellular space					0				Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CCTTCTTATCGTGGTGGTGGTGG	0.601													8	1331	---	---	---	---					
ATAD2	29028	broad.mit.edu	37	8	124384901	124384902	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr8:124384901_124384902insA	uc003yqh.3	-	3	453_454	c.345_346insT	c.(343-348)GATAAAfs	p.D115fs	ATAD2_uc011lii.1_5'UTR|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Frame_Shift_Ins_p.D115fs	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	115_116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TCTTTTTTTTTATCAGCCTGCT	0.198													52	133	---	---	---	---					
SMARCA2	6595	broad.mit.edu	37	9	2039777	2039779	+	In_Frame_Del	DEL	CAG	-	-	rs113070757	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:2039777_2039779delCAG	uc003zhc.2	+	4	766_768	c.667_669delCAG	c.(667-669)CAGdel	p.Q238del	SMARCA2_uc003zhd.2_In_Frame_Del_p.Q238del|SMARCA2_uc010mha.2_In_Frame_Del_p.Q229del	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	238	Poly-Gln.			Missing (in Ref. 1; CAA51407).	chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		gcagcagcaacagcagcagcagc	0.271													8	223	---	---	---	---					
HRCT1	646962	broad.mit.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:35906348_35906350delCTG	uc003zyr.1	+	1	160_162	c.64_66delCTG	c.(64-66)CTGdel	p.L28del		NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	28	Helical; (Potential).					integral to membrane					0						TGTGGCGGTCctgctgctgctgc	0.601													16	295	---	---	---	---					
FOXE1	2304	broad.mit.edu	37	9	100616701	100616706	+	In_Frame_Del	DEL	GCCGCC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:100616701_100616706delGCCGCC	uc004axu.2	+	1	1165_1170	c.505_510delGCCGCC	c.(505-510)GCCGCCdel	p.AA177del		NM_004473	NP_004464	O00358	FOXE1_HUMAN	forkhead box E1	177_178	Ala-rich.				cell migration|embryonic organ morphogenesis|hair follicle morphogenesis|hard palate development|lens morphogenesis in camera-type eye|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|peripheral nervous system development|pharynx development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|soft palate development|thymus development|thyroid gland development|thyroid hormone generation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		Acute lymphoblastic leukemia(62;0.158)				Ggctgccgcagccgccgccgccgccg	0.573													9	49	---	---	---	---					
NR4A3	8013	broad.mit.edu	37	9	102590616	102590618	+	In_Frame_Del	DEL	CAC	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:102590616_102590618delCAC	uc004baf.1	+	3	1021_1023	c.292_294delCAC	c.(292-294)CACdel	p.H108del	NR4A3_uc004bae.2_In_Frame_Del_p.H108del|NR4A3_uc004bag.1_In_Frame_Del_p.H108del|NR4A3_uc004bai.2_In_Frame_Del_p.H119del	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	108	Poly-His.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				ccatcaccatcaccaccaccacc	0.483			T	EWSR1	extraskeletal myxoid chondrosarcoma								12	238	---	---	---	---					
AGPAT2	10555	broad.mit.edu	37	9	139581759	139581761	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:139581759_139581761delCAG	uc004cii.1	-	1	151_153	c.49_51delCTG	c.(49-51)CTGdel	p.L17del	AGPAT2_uc004cij.1_In_Frame_Del_p.L17del	NM_006412	NP_006403	O15120	PLCB_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 2	17	Helical; (Potential).				phosphatidic acid biosynthetic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_cancers(76;0.0893)|all_epithelial(76;0.231)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.87e-06)|Epithelial(140;0.000123)		Tcagctgcaccagcagcagcagc	0.507													8	822	---	---	---	---					
MAMDC4	158056	broad.mit.edu	37	9	139749473	139749474	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:139749473_139749474insC	uc004cjs.2	+	10	1158_1159	c.1108_1109insC	c.(1108-1110)GCCfs	p.A370fs	MAMDC4_uc011mej.1_5'UTR	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	370	MAM 2.|Extracellular (Potential).				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		cgccccccgggcccccgTCCTG	0.550													7	157	---	---	---	---					
GRIN1	2902	broad.mit.edu	37	9	140056884	140056886	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chr9:140056884_140056886delGAG	uc004clk.2	+	13	2110_2112	c.1780_1782delGAG	c.(1780-1782)GAGdel	p.E598del	GRIN1_uc004cli.1_In_Frame_Del_p.E273del|GRIN1_uc004clj.1_In_Frame_Del_p.E595del|GRIN1_uc004cll.2_In_Frame_Del_p.E598del|GRIN1_uc004clm.2_In_Frame_Del_p.E598del|GRIN1_uc004cln.2_In_Frame_Del_p.E616del|GRIN1_uc004clo.2_In_Frame_Del_p.E616del	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	598	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GGTGAACAGCGAGGAGGAGGAGG	0.739													8	275	---	---	---	---					
RBM10	8241	broad.mit.edu	37	X	47030561	47030563	+	In_Frame_Del	DEL	GGA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:47030561_47030563delGGA	uc004dhf.2	+	4	715_717	c.336_338delGGA	c.(334-339)GGGGAG>GGG	p.E119del	RBM10_uc004dhe.1_In_Frame_Del_p.E109del|RBM10_uc004dhg.2_Intron|RBM10_uc004dhh.2_In_Frame_Del_p.E119del|RBM10_uc010nhq.2_Intron|RBM10_uc004dhi.2_In_Frame_Del_p.E184del	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	119	Poly-Glu.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CCGAGCAAGGggaggaggaggag	0.522													8	153	---	---	---	---					
PQBP1	10084	broad.mit.edu	37	X	48759668	48759669	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:48759668_48759669delAG	uc004dle.2	+	5	640_641	c.451_452delAG	c.(451-453)AGAfs	p.R151fs	PQBP1_uc004dlf.2_Frame_Shift_Del_p.R151fs|PQBP1_uc004dlg.2_Frame_Shift_Del_p.R151fs|PQBP1_uc004dld.2_Intron|PQBP1_uc004dlh.2_Frame_Shift_Del_p.R151fs|PQBP1_uc004dli.2_Frame_Shift_Del_p.R151fs|PQBP1_uc004dlj.1_Frame_Shift_Del_p.R151fs|PQBP1_uc004dln.2_Frame_Shift_Del_p.R151fs|PQBP1_uc010nih.2_RNA|PQBP1_uc010nii.2_Frame_Shift_Del_p.R109fs|PQBP1_uc004dlk.2_Intron|PQBP1_uc004dll.2_Intron|PQBP1_uc004dlm.2_Frame_Shift_Del_p.R109fs|PQBP1_uc010nij.2_Intron	NM_001032382	NP_001027554	O60828	PQBP1_HUMAN	polyglutamine binding protein 1	151	3-1.|Arg-rich.|7 X 2 AA tandem repeats of [DE]-R.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|transcription coactivator activity			large_intestine(1)	1						CAAGGTAGACAGAGAGAGAGAG	0.619													9	182	---	---	---	---					
MED12	9968	broad.mit.edu	37	X	70360680	70360682	+	In_Frame_Del	DEL	GCA	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:70360680_70360682delGCA	uc004dyy.2	+	42	6439_6441	c.6240_6242delGCA	c.(6238-6243)CGGCAG>CGG	p.Q2086del	MED12_uc004dyz.2_In_Frame_Del_p.Q2085del|MED12_uc004dza.2_In_Frame_Del_p.Q1936del|MED12_uc010nla.2_In_Frame_Del_p.Q715del	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	2086	Gln-rich.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					accacatccggcagcagcagcag	0.256													8	251	---	---	---	---					
BHLHB9	80823	broad.mit.edu	37	X	102004419	102004421	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:102004419_102004421delGAG	uc010nog.2	+	4	1067_1069	c.496_498delGAG	c.(496-498)GAGdel	p.E171del	BHLHB9_uc011mrq.1_In_Frame_Del_p.E171del|BHLHB9_uc011mrr.1_In_Frame_Del_p.E171del|BHLHB9_uc011mrs.1_In_Frame_Del_p.E171del|BHLHB9_uc011mrt.1_In_Frame_Del_p.E171del|BHLHB9_uc004ejo.2_In_Frame_Del_p.E171del|BHLHB9_uc011mru.1_In_Frame_Del_p.E171del|BHLHB9_uc011mrv.1_In_Frame_Del_p.E171del	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	171	Poly-Glu.					cytoplasm|nucleus	binding			ovary(2)	2						GTCAGGGGCTGAGGAGGAGGAGG	0.488													13	690	---	---	---	---					
CD99L2	83692	broad.mit.edu	37	X	149937526	149937528	+	In_Frame_Del	DEL	GGC	-	-	rs7877654	byFrequency	TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:149937526_149937528delGGC	uc004fel.2	-	11	886_888	c.768_770delGCC	c.(766-771)CCGCCC>CCC	p.256_257PP>P	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_In_Frame_Del_p.207_208PP>P|CD99L2_uc004fen.2_In_Frame_Del_p.184_185PP>P|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_In_Frame_Del_p.183_184PP>P	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	256_257	Cytoplasmic (Potential).|Poly-Pro.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCTGGTTCGGGCGGCGGCGGCG	0.611													8	1178	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2A2-06A-11D-A196-08	TCGA-EE-A2A2-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bea47c69-85e0-41ea-a728-c03756a9b1be	9fdb35fa-10b2-4127-9d3c-7d20fc371102	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													8	205	---	---	---	---					
