Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	865649	865649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:865649C>T	uc001abw.1	+	3	267	c.187C>T	c.(187-189)CCC>TCC	p.P63S	SAMD11_uc001abv.1_Missense_Mutation_p.P63S	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	63						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CGGGAGTGGCCCCACCTGTGG	0.637													7	9					0	0	0.003080	0	0
TNFRSF4	7293	broad.mit.edu	37	1	1147087	1147087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:1147087G>A	uc001ade.2	-	6	765	c.760C>T	c.(760-762)CCT>TCT	p.P254S	TNFRSF4_uc001adf.2_Missense_Mutation_p.P258S	NM_003327	NP_003318	P43489	TNR4_HUMAN	tumor necrosis factor receptor superfamily,	254	Cytoplasmic (Potential).				immune response|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of immunoglobulin secretion|T cell proliferation	integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CACTCACCAGGGGGCTTGTGG	0.697													8	11					0	0	0.003080	0	0
SDF4	51150	broad.mit.edu	37	1	1158713	1158713	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:1158713T>A	uc001adh.3	-	4	817	c.488A>T	c.(487-489)AAG>ATG	p.K163M	SDF4_uc001adg.2_5'Flank|SDF4_uc001adi.3_Missense_Mutation_p.K163M|SDF4_uc009vjv.2_Missense_Mutation_p.K41M|SDF4_uc009vjw.2_RNA|SDF4_uc001adj.1_Missense_Mutation_p.K41M	NM_016176	NP_057260	Q9BRK5	CAB45_HUMAN	stromal cell derived factor 4 isoform 2	163	EF-hand 2.				cerebellum development|fat cell differentiation|response to ethanol|UV protection|zymogen granule exocytosis	bleb|Golgi lumen|late endosome|soluble fraction	calcium ion binding|calcium ion binding|identical protein binding|protein binding			upper_aerodigestive_tract(1)|large_intestine(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;7.85e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.42e-21)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;4.83e-05)|Kidney(185;0.00252)|BRCA - Breast invasive adenocarcinoma(365;0.00263)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0368)|Lung(427;0.204)		AAACTTCACCTTATACTCGTC	0.517													38	59					0	0	0.006999	0	0
ACAP3	116983	broad.mit.edu	37	1	1235944	1235944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:1235944G>A	uc001aeb.2	-	6	541	c.467C>T	c.(466-468)GCC>GTC	p.A156V	ACAP3_uc001ady.2_5'Flank|ACAP3_uc001aea.2_Missense_Mutation_p.A114V|ACAP3_uc001aec.1_Missense_Mutation_p.A114V	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	156					filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						GAGGGTGAGGGCCCCGGTGGC	0.672													19	33					0	0	0.008871	0	0
ATAD3A	55210	broad.mit.edu	37	1	1455661	1455661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:1455661C>T	uc001afz.1	+	6	893	c.799C>T	c.(799-801)CGT>TGT	p.R267C	ATAD3A_uc001aga.1_Missense_Mutation_p.R219C|ATAD3A_uc001agb.1_Missense_Mutation_p.R140C	NM_018188	NP_060658	Q9NVI7	ATD3A_HUMAN	ATPase family, AAA domain containing 3A	267	Potential.						ATP binding|nucleoside-triphosphatase activity|protein binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.12e-36)|OV - Ovarian serous cystadenocarcinoma(86;2.18e-22)|Colorectal(212;0.000164)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00233)|BRCA - Breast invasive adenocarcinoma(365;0.00469)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0347)|Lung(427;0.147)		GGCCGAGCACCGTCAGACCGT	0.701													29	71					0	0	0.004878	0	0
CDK11B	984	broad.mit.edu	37	1	1647848	1647848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:1647848G>A	uc001agv.1	-	9	542	c.431C>T	c.(430-432)GCT>GTT	p.A144V	CDK11B_uc001ags.1_5'UTR|CDK11B_uc001agt.1_5'UTR|CDK11B_uc001aha.1_Missense_Mutation_p.A110V|CDK11B_uc001agw.1_Missense_Mutation_p.A99V|CDK11B_uc001agy.1_Missense_Mutation_p.A133V|CDK11B_uc001agx.1_Missense_Mutation_p.A133V|CDK11B_uc001agz.1_5'UTR|SLC35E2B_uc001ahh.3_Intron|SLC35E2_uc009vkm.1_Intron|CDK11A_uc009vkr.2_Missense_Mutation_p.A132V|CDK11A_uc009vks.2_Missense_Mutation_p.A142V|CDK11A_uc010nys.1_Missense_Mutation_p.A132V|CDK11A_uc010nyt.1_Missense_Mutation_p.A142V|CDK11A_uc010nyu.1_RNA|CDK11A_uc009vkt.1_Missense_Mutation_p.A132V|CDK11A_uc009vku.1_Missense_Mutation_p.A132V|CDK11A_uc009vkv.1_Missense_Mutation_p.A142V|CDK11A_uc001aht.1_Missense_Mutation_p.A132V|CDK11B_uc001ahu.1_Missense_Mutation_p.A132V|CDK11B_uc001ahv.1_Missense_Mutation_p.A142V|CDK11B_uc001ahw.1_Missense_Mutation_p.A142V	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)	144	Glu-rich.				apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						TTCCCGGCGAGCTTTATCCTG	0.468													35	80					0	0	0.004289	0	0
TNFRSF14	8764	broad.mit.edu	37	1	2493252	2493252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:2493252G>A	uc001ajr.2	+	6	991	c.692G>A	c.(691-693)AGG>AAG	p.R231K	TNFRSF14_uc001ajt.1_3'UTR|TNFRSF14_uc001ajs.2_Intron	NM_003820	NP_003811	Q92956	TNR14_HUMAN	tumor necrosis factor receptor superfamily,	231	Cytoplasmic (Potential).				immune response|interspecies interaction between organisms|T cell costimulation		tumor necrosis factor receptor activity			kidney(1)	1	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;1.11e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000326)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		AGAAAGCCAAGGGGTGAGCAC	0.572			Mis|N|F		follicular lymphoma								40	76					0	0	0.011902	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938798	2938798	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:2938798A>C	uc001ajz.2	+	1	753	c.548A>C	c.(547-549)CAC>CCC	p.H183P		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	183						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		ACCAAGCTCCACGTGGCGGGC	0.657													18	32					0	0	0.007413	0	0
ZBTB48	3104	broad.mit.edu	37	1	6649218	6649219	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:6649218_6649219CC>TT	uc009vmc.1	+	11	2136_2137	c.2013_2014CC>TT	c.(2011-2016)GTCCTG>GTTTTG	p.671_672VL>VL	ZBTB48_uc001anx.2_Silent_p.671_672VL>VL|ZBTB48_uc009vmd.1_Silent_p.671_672VL>VL|ZBTB48_uc001any.1_Silent_p.309_310VL>VL	NM_005341	NP_005332	P10074	ZBT48_HUMAN	zinc finger and BTB domain containing 48	671_672						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.35e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00109)|STAD - Stomach adenocarcinoma(132;0.017)|READ - Rectum adenocarcinoma(331;0.0642)		GCCCAGGTGTCCTGGAGCCCTC	0.653													22	59					0	0	0.004672	0	0
PIK3CD	5293	broad.mit.edu	37	1	9780172	9780172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:9780172G>A	uc001aqb.3	+	11	1550	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	PIK3CD_uc010oaf.1_Missense_Mutation_p.E448K|PIK3CD_uc001aqe.3_Missense_Mutation_p.E413K	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	448					phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		GTGTTCAGATGAGAAGGGCGA	0.652													34	58					0	0	0.005524	0	0
UBE4B	10277	broad.mit.edu	37	1	10161224	10161224	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:10161224C>T	uc001aqs.3	+	4	1119	c.406C>T	c.(406-408)CGA>TGA	p.R136*	UBE4B_uc001aqr.3_Nonsense_Mutation_p.R136*|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_5'UTR	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	136					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TGAAAATGATCGAAGAGAAAA	0.383													26	42					0	0	0.004656	0	0
CASZ1	54897	broad.mit.edu	37	1	10708096	10708096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:10708096G>A	uc001aro.2	-	16	3579	c.3259C>T	c.(3259-3261)CCT>TCT	p.P1087S	CASZ1_uc001arp.1_Missense_Mutation_p.P1087S	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1087	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGGACCGGAGGGGACGAGGGG	0.692													6	10					0	0	0.001168	0	0
CASZ1	54897	broad.mit.edu	37	1	10713736	10713736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:10713736G>A	uc001aro.2	-	11	2698	c.2378C>T	c.(2377-2379)TCG>TTG	p.S793L	CASZ1_uc001arp.1_Missense_Mutation_p.S793L|CASZ1_uc009vmx.2_Missense_Mutation_p.S817L	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	793					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGGCAGGCCCGAGTTGGAGAG	0.701													21	36					0	0	0.004656	0	0
MTOR	2475	broad.mit.edu	37	1	11187187	11187187	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:11187187A>T	uc001asd.2	-	45	6352	c.6231T>A	c.(6229-6231)GAT>GAA	p.D2077E	MTOR_uc001asc.2_Missense_Mutation_p.D282E	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	2077					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CCTCCATTAAATCTCGACCAT	0.488													19	43					0	0	0.008871	0	0
FBXO44	93611	broad.mit.edu	37	1	11716079	11716079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:11716079C>T	uc001asm.2	+	2	313	c.187C>T	c.(187-189)CAG>TAG	p.Q63*	FBXO2_uc001asj.2_5'Flank|FBXO2_uc009vna.2_5'Flank|FBXO2_uc009vnb.1_5'Flank|FBXO44_uc001ask.2_Nonsense_Mutation_p.Q63*|FBXO44_uc010oaq.1_Nonsense_Mutation_p.Q63*|FBXO44_uc001asl.2_Nonsense_Mutation_p.Q63*|FBXO44_uc001asn.2_Nonsense_Mutation_p.Q63*|FBXO44_uc010oar.1_Nonsense_Mutation_p.Q63*|FBXO44_uc010oas.1_5'UTR	NM_033182	NP_149438	Q9H4M3	FBX44_HUMAN	F-box protein 44 isoform 1	63					protein catabolic process	SCF ubiquitin ligase complex	protein binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.41e-06)|COAD - Colon adenocarcinoma(227;0.000255)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000758)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		GGACTGGGACCAGCCCGTGGC	0.632													37	61					0	0	0.005524	0	0
MAD2L2	10459	broad.mit.edu	37	1	11735727	11735727	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:11735727G>A	uc001asp.2	-	7	677	c.489C>T	c.(487-489)ATC>ATT	p.I163I	MAD2L2_uc009vnc.2_Silent_p.I163I|MAD2L2_uc001asq.3_Silent_p.I163I	NM_006341	NP_006332	Q9UI95	MD2L2_HUMAN	MAD2 homolog	163	Mediates interaction with ipaB.|HORMA.				cell division|DNA damage response, signal transduction resulting in transcription|double-strand break repair|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription, DNA-dependent|regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleoplasm|spindle|zeta DNA polymerase complex	JUN kinase binding				0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGATGACCTGGATCTTCTCCA	0.617								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					51	80					0	0	0.014410	0	0
CLCN6	1185	broad.mit.edu	37	1	11897474	11897474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:11897474C>T	uc001ate.3	+	20	2326	c.2213C>T	c.(2212-2214)CCT>CTT	p.P738L	CLCN6_uc010oat.1_Missense_Mutation_p.P454L|CLCN6_uc010oau.1_Missense_Mutation_p.P716L|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	738	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CGGTTCCGCCCTCTGACCTTC	0.557													24	57					0	0	0.003330	0	0
AADACL4	343066	broad.mit.edu	37	1	12704613	12704613	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:12704613C>T	uc001auf.2	+	1	48	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	16	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CCATCTTTTTCCTGGGGGTCT	0.532													57	112					0	0	0.014410	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855983	12855983	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:12855983C>T	uc001auj.1	+	4	1366	c.1263C>T	c.(1261-1263)TCC>TCT	p.S421S		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	421											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTTTGAATTCCTTGGTTCGTG	0.552													28	140					0	0	0.008740	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921472	12921472	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:12921472C>T	uc001aum.1	+	4	1350	c.1263C>T	c.(1261-1263)TCC>TCT	p.S421S		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	421											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTTTGAATTCCTTGGTTCGTG	0.547													5	124					0	0	0.002780	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943183	12943183	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:12943183G>A	uc001aun.2	-	2	104	c.33C>T	c.(31-33)CTC>CTT	p.L11L		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	11										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CAAGCTCCAGGAGTCTGGGTG	0.567													38	260					0	0	0.010771	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12979687	12979687	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:12979687C>T	uc001aup.2	+	4	962	c.879C>T	c.(877-879)TCC>TCT	p.S293S		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	293											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCAGGCCTCCTTGGAGATGG	0.547													28	181					0	0	0.006999	0	0
LOC440563	440563	broad.mit.edu	37	1	13183384	13183384	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:13183384C>T	uc010obg.1	-	1	584	c.489G>A	c.(487-489)AAG>AAA	p.K163K		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	163						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GCTTTCCACTCTTAGAATTGA	0.498													62	638					0	0	0.014410	0	0
LOC440563	440563	broad.mit.edu	37	1	13183519	13183519	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:13183519A>T	uc010obg.1	-	1	449	c.354T>A	c.(352-354)GAT>GAA	p.D118E		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	118						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CATCATAATAATCCCGTTGAA	0.517													6	86					0	0	0.014323	0	0
PRAMEF18	391003	broad.mit.edu	37	1	13695885	13695885	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:13695885C>T	uc009vny.1	-	3	1127	c.1080G>A	c.(1078-1080)GGG>GGA	p.G360G		NM_001099850	NP_001093320	Q5VWM3	PRA18_HUMAN	PRAME family member 18	360											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGTACCCAATCCCACAGTCCA	0.552													145	491					0	0	0.014410	0	0
SPEN	23013	broad.mit.edu	37	1	16257460	16257460	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:16257460C>T	uc001axk.1	+	11	4929	c.4725C>T	c.(4723-4725)TCC>TCT	p.S1575S	SPEN_uc010obp.1_Silent_p.S1534S	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1575					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CAACTGATTCCATTCAAGAAC	0.423													21	33					0	0	0.008871	0	0
CLCNKB	1188	broad.mit.edu	37	1	16383395	16383395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:16383395C>T	uc001axw.3	+	20	2128	c.2048C>T	c.(2047-2049)CCG>CTG	p.P683L	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.P683L|CLCNKB_uc001axy.3_Missense_Mutation_p.P513L	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	683	CBS 2.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CTGACAAATCCGCCAGCCCCA	0.572													9	23					0	0	0.001855	0	0
ARHGEF19	128272	broad.mit.edu	37	1	16535405	16535405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:16535405C>T	uc001ayc.1	-	2	282	c.145G>A	c.(145-147)GAC>AAC	p.D49N	ARHGEF19_uc009voo.1_5'Flank|ARHGEF19_uc001ayb.1_5'Flank	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	49					regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		GGGAAAAGGTCCAGACACACT	0.657													17	26					0	0	0.007413	0	0
ESPNP	284729	broad.mit.edu	37	1	17023276	17023276	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:17023276G>A	uc001azn.1	-	9	1672	c.1558C>T	c.(1558-1560)CAG>TAG	p.Q520*		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CCGCCTACCTGGAAGGCCGGC	0.677													5	61					0	0	0.001168	0	0
ATP13A2	23400	broad.mit.edu	37	1	17322889	17322889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:17322889G>A	uc001baa.2	-	13	1488	c.1298C>T	c.(1297-1299)TCT>TTT	p.S433F	ATP13A2_uc001bab.2_Missense_Mutation_p.S428F|ATP13A2_uc001bac.2_Missense_Mutation_p.S428F|ATP13A2_uc009vpa.1_Intron|ATP13A2_uc001bad.1_Missense_Mutation_p.S146F	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	433	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		ACCCAGGACAGAGAGGGCAGC	0.602													31	38					0	0	0.003271	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809378	18809378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:18809378G>A	uc001bax.2	+	1	1955	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E417K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	635	Kelch 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCGTGCCAAGGAAATCTTCGT	0.711													12	22					0	0	0.013537	0	0
PAX7	5081	broad.mit.edu	37	1	19029590	19029590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:19029590G>A	uc001bay.2	+	7	1553	c.955G>A	c.(955-957)GGG>AGG	p.G319R	PAX7_uc001baz.2_Missense_Mutation_p.G317R|PAX7_uc010oct.1_Missense_Mutation_p.G319R	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	319					anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		CTCTACAGATGGGGGCAGCAC	0.657			T	FOXO1A	alveolar rhabdomyosarcoma								7	30					0	0	0.004482	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181021	19181021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:19181021C>T	uc001bba.1	-	3	944	c.943G>A	c.(943-945)GAG>AAG	p.E315K		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	315	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGGCGCAGCTCCGTGAGGTTG	0.657													19	34					0	0	0.007413	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181355	19181355	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:19181355C>T	uc001bba.1	-	3	610	c.609G>A	c.(607-609)TGG>TGA	p.W203*		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	203	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGATCCAGTTCCAGCGGAAGT	0.642													12	10					0	0	0.010729	0	0
HSPG2	3339	broad.mit.edu	37	1	22159032	22159032	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:22159032G>A	uc001bfj.2	-	81	11203	c.11163C>T	c.(11161-11163)CCC>CCT	p.P3721P	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Silent_p.P3722P	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3721	Laminin G-like 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	AGATGAAGTCGGGCTGCCGGT	0.662													27	68					0	0	0.010818	0	0
C1QC	714	broad.mit.edu	37	1	22974110	22974110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:22974110C>T	uc001bgc.3	+	3	675	c.572C>T	c.(571-573)ACC>ATC	p.T191I	C1QC_uc001bga.3_Missense_Mutation_p.T191I|C1QC_uc001bgb.2_Missense_Mutation_p.T191I	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	191	C1q.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AAAGTGGTCACCTTCTGTGGC	0.587													21	55					0	0	0.012319	0	0
ZNF436	80818	broad.mit.edu	37	1	23688594	23688594	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:23688594G>A	uc001bgt.2	-	3	1662	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	ZNF436_uc001bgu.2_Silent_p.F427F	NM_030634	NP_085137	Q9C0F3	ZN436_HUMAN	zinc finger protein 436	427	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.44e-26)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;5.97e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000977)|KIRC - Kidney renal clear cell carcinoma(1967;0.00336)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		AGCTCTGGGTGAAACCTTTCC	0.483													52	82					0	0	0.014410	0	0
C1orf130	400746	broad.mit.edu	37	1	24932237	24932237	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:24932237G>A	uc001bjk.1	+	4	374	c.308G>A	c.(307-309)TGA>TAA	p.*103*		NM_001010980	NP_001010980	Q5T1S8	CA130_HUMAN	chromosome 1 open reading frame 130	103						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0119)|all_lung(284;0.0154)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0439)|OV - Ovarian serous cystadenocarcinoma(117;1.48e-24)|Colorectal(126;6.93e-08)|COAD - Colon adenocarcinoma(152;3.69e-06)|GBM - Glioblastoma multiforme(114;0.00036)|BRCA - Breast invasive adenocarcinoma(304;0.00189)|KIRC - Kidney renal clear cell carcinoma(1967;0.00382)|STAD - Stomach adenocarcinoma(196;0.00521)|READ - Rectum adenocarcinoma(331;0.0659)|Lung(427;0.144)		GAGACGCGATGACCTCTACCC	0.582													12	44					0	0	0.013537	0	0
TMEM57	55219	broad.mit.edu	37	1	25824873	25824873	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:25824873C>T	uc001bkk.2	+	11	2113	c.1911C>T	c.(1909-1911)TCC>TCT	p.S637S	TMEM57_uc009vru.2_Silent_p.S410S|TMEM57_uc009vrv.2_Silent_p.S279S	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	637						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCTGTTTCCCCCCACTACT	0.532													37	74					0	0	0.006230	0	0
AIM1L	55057	broad.mit.edu	37	1	26655269	26655269	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:26655269C>T	uc001bmd.3	-	15	1705	c.1275G>A	c.(1273-1275)GAG>GAA	p.E425E		NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	425	Beta/gamma crystallin 'Greek key' 9.						sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		TGTTGAAGCCCTCGGCTTGCA	0.602													35	63					0	0	0.005524	0	0
LIN28A	79727	broad.mit.edu	37	1	26751920	26751920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:26751920G>A	uc001bmj.2	+	3	469	c.355G>A	c.(355-357)GGG>AGG	p.G119R	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	119					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						ATTCTGTATTGGGAGTGAGAG	0.512													47	97					0	0	0.014410	0	0
ZDHHC18	84243	broad.mit.edu	37	1	27177626	27177626	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:27177626G>A	uc001bnb.2	+	6	935	c.840G>A	c.(838-840)CTG>CTA	p.L280L		NM_032283	NP_115659	Q9NUE0	ZDH18_HUMAN	zinc finger, DHHC-type containing 18	280	Helical; (Potential).					integral to membrane	zinc ion binding				0		all_cancers(24;5.82e-22)|all_epithelial(13;9.91e-20)|Colorectal(325;0.000147)|Breast(348;0.000706)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;5.71e-53)|Epithelial(14;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(117;1.53e-29)|Colorectal(126;1.9e-09)|COAD - Colon adenocarcinoma(152;4.2e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000548)|STAD - Stomach adenocarcinoma(196;0.00065)|KIRC - Kidney renal clear cell carcinoma(1967;0.000779)|GBM - Glioblastoma multiforme(114;0.0265)|READ - Rectum adenocarcinoma(331;0.0455)|Lung(427;0.163)|LUSC - Lung squamous cell carcinoma(448;0.237)		TCACCGTGCTGGAGTTGGTGA	0.562													36	59					0	0	0.004878	0	0
WDTC1	23038	broad.mit.edu	37	1	27631591	27631591	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:27631591C>T	uc009vst.2	+	15	2278	c.1743C>T	c.(1741-1743)TCC>TCT	p.S581S	WDTC1_uc001bno.2_Silent_p.S580S|WDTC1_uc001bnp.1_RNA|WDTC1_uc001bnq.2_Silent_p.S259S	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	581	WD 7.						protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		GGGATGAGTCCATTGTCAACT	0.587													16	28					0	0	0.006122	0	0
AHDC1	27245	broad.mit.edu	37	1	27878454	27878454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:27878454G>A	uc009vsy.2	-	6	1142	c.173C>T	c.(172-174)TCC>TTC	p.S58F	AHDC1_uc009vsz.1_Missense_Mutation_p.S58F|AHDC1_uc001boh.1_Intron	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	58	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		TGGGTTCTCGGAGAAGGCGTG	0.617													8	15					0	0	0.003080	0	0
PTPRU	10076	broad.mit.edu	37	1	29585184	29585184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:29585184G>A	uc001bru.2	+	3	483	c.373G>A	c.(373-375)GGG>AGG	p.G125R	PTPRU_uc001brv.2_Missense_Mutation_p.G125R|PTPRU_uc001brw.2_Missense_Mutation_p.G125R|PTPRU_uc009vtq.2_Missense_Mutation_p.G125R|PTPRU_uc009vtr.2_Missense_Mutation_p.G125R	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	125	Extracellular (Potential).|MAM.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GCGCGTTAATGGGGGCCCCCT	0.612													36	112					0	0	0.003271	0	0
PUM1	9698	broad.mit.edu	37	1	31438843	31438843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:31438843C>T	uc001bsi.1	-	13	2185	c.2072G>A	c.(2071-2073)GGG>GAG	p.G691E	PUM1_uc001bsf.1_Missense_Mutation_p.G357E|PUM1_uc001bsg.1_Missense_Mutation_p.G504E|PUM1_uc001bsh.1_Missense_Mutation_p.G691E|PUM1_uc001bsj.1_Missense_Mutation_p.G665E|PUM1_uc010oga.1_Missense_Mutation_p.G547E|PUM1_uc001bsk.1_Missense_Mutation_p.G727E|PUM1_uc010ogb.1_Missense_Mutation_p.G632E	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	691	Ser-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		TGTTCCAAACCCTCCAAGGGC	0.493													29	63					0	0	0.006320	0	0
BAI2	576	broad.mit.edu	37	1	32196635	32196635	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:32196635G>A	uc001btn.2	-	29	4500	c.4146C>T	c.(4144-4146)CCC>CCT	p.P1382P	BAI2_uc001btm.2_Silent_p.P376P|BAI2_uc001btp.1_Silent_p.P376P|BAI2_uc010ogn.1_Silent_p.P352P|BAI2_uc010ogo.1_Silent_p.P991P|BAI2_uc010ogp.1_Silent_p.P1315P|BAI2_uc010ogq.1_Silent_p.P1349P|BAI2_uc001bto.2_Silent_p.P1382P	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1382	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CAGCTCGCCGGGGGGTCCCCT	0.701													7	13					0	0	0.003080	0	0
KPNA6	23633	broad.mit.edu	37	1	32620246	32620246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:32620246C>T	uc001bug.2	+	2	150	c.62C>T	c.(61-63)GCT>GTT	p.A21V	KPNA6_uc001buh.2_5'UTR|KPNA6_uc010ogx.1_Missense_Mutation_p.A18V|KPNA6_uc010ogy.1_Missense_Mutation_p.A26V|KPNA6_uc009vtz.2_5'Flank	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	21	IBB.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				AAGAACAATGCTCTAAACCCT	0.443													12	31					0	0	0.001855	0	0
BSDC1	55108	broad.mit.edu	37	1	32846866	32846866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:32846866G>A	uc001bvh.3	-	5	408	c.361C>T	c.(361-363)CGC>TGC	p.R121C	BSDC1_uc010ohg.1_Missense_Mutation_p.R138C|BSDC1_uc010ohh.1_Missense_Mutation_p.R65C|BSDC1_uc010ohi.1_Missense_Mutation_p.R26C|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Missense_Mutation_p.R17C|BSDC1_uc001bvi.2_Missense_Mutation_p.R138C	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	121							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CTATAGAGGCGAGCCTGTAAG	0.502													7	21					0	0	0.003080	0	0
CSMD2	114784	broad.mit.edu	37	1	34052145	34052145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:34052145C>T	uc001bxn.1	-	47	7045	c.7016G>A	c.(7015-7017)GGA>GAA	p.G2339E	CSMD2_uc001bxm.1_Missense_Mutation_p.G2337E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2339	Sushi 13.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGGTAGGTTCCAAGTTTGCA	0.488													21	55					0	0	0.014323	0	0
CSMD2	114784	broad.mit.edu	37	1	34087838	34087838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:34087838G>A	uc001bxn.1	-	37	5665	c.5636C>T	c.(5635-5637)TCC>TTC	p.S1879F	CSMD2_uc001bxm.1_Missense_Mutation_p.S1919F|CSMD2_uc001bxo.1_Missense_Mutation_p.S792F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1879	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAGCTGGTTGGAGGTGCTGTT	0.517													37	72					0	0	0.004289	0	0
CSMD2	114784	broad.mit.edu	37	1	34118059	34118059	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:34118059G>T	uc001bxn.1	-	28	4359	c.4330C>A	c.(4330-4332)CCC>ACC	p.P1444T	CSMD2_uc001bxm.1_Missense_Mutation_p.P1484T|CSMD2_uc001bxo.1_Missense_Mutation_p.P357T	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1444	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCCCGCAGGGAGCTGAGGAG	0.562													24	61					5.45024e-15	6.0316e-15	0.003330	1	0
CSMD2	114784	broad.mit.edu	37	1	34174812	34174812	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:34174812G>A	uc001bxn.1	-	22	3362	c.3333C>T	c.(3331-3333)TCC>TCT	p.S1111S	CSMD2_uc001bxm.1_Silent_p.S1151S|CSMD2_uc001bxo.1_Silent_p.S24S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1111	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAAAGTTGGGGGACAGCAAAG	0.478													21	29					0	0	0.010504	0	0
CSMD2	114784	broad.mit.edu	37	1	34258122	34258122	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:34258122G>A	uc001bxn.1	-	11	1361	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I	CSMD2_uc001bxm.1_Silent_p.I484I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	444	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGGCGAGCTTGATCACCTAGG	0.537													17	29					0	0	0.004007	0	0
HMGB4	127540	broad.mit.edu	37	1	34330330	34330330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:34330330G>A	uc001bxp.2	+	2	2281	c.538G>A	c.(538-540)GGG>AGG	p.G180R	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Missense_Mutation_p.G106R	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	180						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCGGTGCAGAGGGAAAAGAGT	0.458													11	31					0	0	0.002450	0	0
ZMYM1	79830	broad.mit.edu	37	1	35580054	35580054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:35580054C>T	uc001bym.2	+	11	2771	c.2623C>T	c.(2623-2625)CTT>TTT	p.L875F	ZMYM1_uc001byn.2_Missense_Mutation_p.L875F|ZMYM1_uc010ohu.1_Missense_Mutation_p.L856F|ZMYM1_uc001byo.2_Missense_Mutation_p.L515F|ZMYM1_uc009vut.2_Missense_Mutation_p.L800F	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	875						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TACAGGAATTCTTTCCAAAGA	0.318													8	33					0	0	0.003080	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35919174	35919174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:35919174G>A	uc001byx.2	-	12	2155	c.1897C>T	c.(1897-1899)CTC>TTC	p.L633F	KIAA0319L_uc001byw.2_Missense_Mutation_p.L70F|KIAA0319L_uc010ohv.1_Missense_Mutation_p.L275F	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	633	PKD 4.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTTTCCCAGAGATATGAGATA	0.428													29	59					0	0	0.003755	0	0
EIF2C4	192670	broad.mit.edu	37	1	36282515	36282515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:36282515C>T	uc001bzj.1	+	2	242	c.52C>T	c.(52-54)CGT>TGT	p.R18C		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	18					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GCCACCTCGTCGTCCTGGCCT	0.353													60	82					0	0	0.014410	0	0
COL8A2	1296	broad.mit.edu	37	1	36564376	36564376	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:36564376C>T	uc001bzv.1	-	2	913	c.906G>A	c.(904-906)GGG>GGA	p.G302G	COL8A2_uc001bzw.1_Silent_p.G237G	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	302	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGCCCCGGGTCCCTGGCTCCC	0.697													14	14					0	0	0.003163	0	0
MACF1	23499	broad.mit.edu	37	1	39802074	39802074	+	Missense_Mutation	SNP	C	T	T	rs3116394		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:39802074C>T	uc010oiu.1	+	1	5265	c.5134C>T	c.(5134-5136)CCA>TCA	p.P1712S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3277	LRR 10.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATCCTTTCTTCCAGAGAAACT	0.428													37	54					0	0	0.005524	0	0
MACF1	23499	broad.mit.edu	37	1	39910422	39910422	+	Missense_Mutation	SNP	C	G	G	rs680728		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:39910422C>G	uc010oiu.1	+	45	14980	c.14849C>G	c.(14848-14850)TCT>TGT	p.S4950C	MACF1_uc010ois.1_Missense_Mutation_p.S4448C	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CGTGACGACTCTGGGTCTGGC	0.458													26	45					0	0	0.003954	0	0
MACF1	23499	broad.mit.edu	37	1	39926464	39926464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:39926464C>T	uc010oiu.1	+	57	16981	c.16850C>T	c.(16849-16851)TCC>TTC	p.S5617F	MACF1_uc010ois.1_Missense_Mutation_p.S5115F|MACF1_uc001cde.1_5'Flank|MACF1_uc001cdf.1_5'Flank	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7073	EF-hand 1.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATTTTAGCATCCAGTGAGTCT	0.423													34	121					0	0	0.003755	0	0
ZNF684	127396	broad.mit.edu	37	1	41012272	41012272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:41012272C>T	uc001cft.1	+	5	528	c.277C>T	c.(277-279)CGG>TGG	p.R93W		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	93					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			AGGGAAGCATCGGGAAAGCAA	0.353													17	41					0	0	0.008871	0	0
KCNQ4	9132	broad.mit.edu	37	1	41303398	41303398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:41303398G>A	uc001cgh.1	+	13	1889	c.1807G>A	c.(1807-1809)GGG>AGG	p.G603R	KCNQ4_uc001cgi.1_Missense_Mutation_p.G549R	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	603	Cytoplasmic.|A-domain (Tetramerization).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			GGGCGACAAGGGGCCCTCCGA	0.652													13	21					0	0	0.003163	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046567	42046567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:42046567G>A	uc001cgz.3	-	4	5115	c.3902C>T	c.(3901-3903)TCA>TTA	p.S1301L	HIVEP3_uc001cha.3_Missense_Mutation_p.S1301L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1301					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGGAGGAGCTGATGTAGGTGC	0.617													28	45					0	0	0.007291	0	0
HIVEP3	59269	broad.mit.edu	37	1	42050393	42050393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:42050393C>T	uc001cgz.3	-	4	1289	c.76G>A	c.(76-78)GCC>ACC	p.A26T	HIVEP3_uc001cha.3_Missense_Mutation_p.A26T|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	26					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GTCTGAATGGCCTCTCCTTTG	0.582													31	192					0	0	0.009535	0	0
IPO13	9670	broad.mit.edu	37	1	44433324	44433324	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:44433324C>T	uc001ckx.2	+	20	3657	c.2862C>T	c.(2860-2862)CTC>CTT	p.L954L	IPO13_uc001cky.2_Silent_p.L172L	NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	954					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				GCCGGGGTCTCCATGGCACAG	0.557													11	31					0	0	0.010729	0	0
EIF2B3	8891	broad.mit.edu	37	1	45363098	45363098	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:45363098G>A	uc001cmt.1	-	6	712	c.585C>T	c.(583-585)TTC>TTT	p.F195F	EIF2B3_uc001cmu.1_Silent_p.F195F|EIF2B3_uc001cmv.1_Silent_p.F195F|EIF2B3_uc001cmw.2_Silent_p.F195F	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	195					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GACCCGTGTGGAAACGTATTC	0.383													11	19					0	0	0.008291	0	0
HECTD3	79654	broad.mit.edu	37	1	45469358	45469358	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:45469358G>A	uc009vxk.2	-	20	2582	c.2484C>T	c.(2482-2484)TTC>TTT	p.F828F	HECTD3_uc001cmx.3_Silent_p.F177F|HECTD3_uc001cmy.3_Silent_p.F438F|HECTD3_uc010olh.1_Silent_p.F544F	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	828	HECT.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					AGTGTGGCAGGAAGAGGGTGC	0.602													28	80					0	0	0.012213	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45501489	45501489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:45501489G>A	uc001cnd.2	-	10	2390	c.2162C>T	c.(2161-2163)CCT>CTT	p.P721L		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	721							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					ACCGCTGAAAGGACCTCCTGG	0.498													18	34					0	0	0.007413	0	0
MUTYH	4595	broad.mit.edu	37	1	45797756	45797756	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:45797756C>T	uc001cnm.2	-	11	1143	c.927G>A	c.(925-927)GTG>GTA	p.V309V	MUTYH_uc009vxn.2_Silent_p.V134V|MUTYH_uc001cnf.2_Silent_p.V284V|MUTYH_uc009vxo.2_Silent_p.V284V|MUTYH_uc001cng.2_Silent_p.V295V|MUTYH_uc001cnj.2_Silent_p.V192V|MUTYH_uc001cni.2_Silent_p.V284V|MUTYH_uc001cnh.2_Silent_p.V285V|MUTYH_uc001cno.2_Silent_p.V192V|MUTYH_uc001cnk.2_Silent_p.V169V|MUTYH_uc010oll.1_Intron|MUTYH_uc001cnl.2_Silent_p.V298V|MUTYH_uc009vxp.2_Silent_p.V312V|MUTYH_uc001cnn.2_Silent_p.V299V	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	309					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					GTTCCTGCTCCACCTGAGAGG	0.612			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				30	58					0	0	0.009535	0	0
MKNK1	8569	broad.mit.edu	37	1	47034134	47034134	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47034134A>C	uc001cqb.2	-	9	897	c.653T>G	c.(652-654)TTG>TGG	p.L218W	MKNK1_uc010omd.1_Missense_Mutation_p.L82W|MKNK1_uc001cqc.2_Missense_Mutation_p.L177W|MKNK1_uc009vyi.2_Missense_Mutation_p.L177W|MKNK1_uc010ome.1_Missense_Mutation_p.L82W|MKNK1_uc009vyj.2_Missense_Mutation_p.L122W|MKNK1_uc001cqd.2_Missense_Mutation_p.L165W	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	218	Protein kinase.				intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					AGATTCACACAATATATTTTC	0.383													30	34					0	0	0.003271	0	0
CYP4B1	1580	broad.mit.edu	37	1	47283644	47283644	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47283644G>A	uc001cqm.3	+	10	1296	c.1212G>A	c.(1210-1212)CTG>CTA	p.L404L	CYP4B1_uc001cqn.3_Silent_p.L405L|CYP4B1_uc009vym.2_Silent_p.L390L|CYP4B1_uc010omk.1_Silent_p.L241L	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	404					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CAGGAAGCCTGATCTCTATGC	0.567													58	114					0	0	0.014410	0	0
CYP4A11	1579	broad.mit.edu	37	1	47399643	47399643	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47399643G>A	uc001cqp.3	-	9	1248	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	CYP4A11_uc001cqq.2_Silent_p.F399F|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	399					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GCCCATCAGGGAAGGTGACGG	0.577													24	31					0	0	0.006320	0	0
CYP4X1	260293	broad.mit.edu	37	1	47501543	47501543	+	Silent	SNP	G	A	A	rs114519235	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47501543G>A	uc001cqt.2	+	5	808	c.558G>A	c.(556-558)TCG>TCA	p.S186S	CYP4X1_uc001cqr.2_Silent_p.S185S|CYP4X1_uc001cqs.2_Silent_p.S121S	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	186						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						ACATCAACTCGATGTCTCTGG	0.468													18	33					0	0	0.008871	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515792	47515792	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47515792C>T	uc001cqt.2	+	12	1726	c.1476C>T	c.(1474-1476)ATC>ATT	p.I492I	CYP4X1_uc001cqr.2_Silent_p.I491I|CYP4X1_uc001cqs.2_Silent_p.I427I	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	492						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						ACCATTTTATCCTCAAGCCCA	0.418													48	55					0	0	0.014410	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515810	47515810	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47515810G>A	uc001cqt.2	+	12	1744	c.1494G>A	c.(1492-1494)GGG>GGA	p.G498G	CYP4X1_uc001cqr.2_Silent_p.G497G|CYP4X1_uc001cqs.2_Silent_p.G433G	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	498						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CCAAGAATGGGATGTATTTGC	0.418													28	65					0	0	0.006320	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47560288	47560288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:47560288G>A	uc001cqu.1	+	7	826	c.823G>A	c.(823-825)GAT>AAT	p.D275N		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	275	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						GCTAAAACAAGATACTACTCA	0.353													25	53					0	0	0.004289	0	0
ORC1L	4998	broad.mit.edu	37	1	52861988	52861988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:52861988C>T	uc001ctt.2	-	5	670	c.451G>A	c.(451-453)GAG>AAG	p.E151K	ORC1L_uc010oni.1_Missense_Mutation_p.E151K|ORC1L_uc001ctu.2_Missense_Mutation_p.E151K|ORC1L_uc009vzd.2_5'UTR	NM_004153	NP_004144	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	151	BAH.				cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding				0						AGTGTCTTCTCATTTTTCAGA	0.428													40	81					0	0	0.009718	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52991400	52991400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:52991400G>A	uc001ctx.2	-	2	787	c.553C>T	c.(553-555)CCA>TCA	p.P185S	ZCCHC11_uc001cty.2_Missense_Mutation_p.P185S|ZCCHC11_uc001ctz.2_Missense_Mutation_p.P185S|ZCCHC11_uc009vze.1_Missense_Mutation_p.P185S|ZCCHC11_uc009vzf.1_Intron|ZCCHC11_uc001cub.2_Missense_Mutation_p.P185S|ZCCHC11_uc001cuc.2_RNA|ZCCHC11_uc001cud.2_Missense_Mutation_p.P185S	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	185					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						AAGGAGCTTGGAATTTTTTTT	0.408													95	151					0	0	0.014410	0	0
CDCP2	200008	broad.mit.edu	37	1	54605545	54605546	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:54605545_54605546CC>TA	uc001cwv.1	-	4	1845_1846	c.997_998GG>TA	c.(997-999)GGG>TAG	p.G333*		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	333	CUB 3.					extracellular region				ovary(1)	1						ACACCAATTCCCCAGCAGGGGT	0.639													19	24					0	0	0.004672	0	0
TTC4	7268	broad.mit.edu	37	1	55207154	55207154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:55207154C>T	uc001cxx.3	+	10	1185	c.1132C>T	c.(1132-1134)CTC>TTC	p.L378F	C1orf175_uc001cxq.2_RNA|TTC4_uc001cxw.3_Missense_Mutation_p.L279F|TTC4_uc001cxv.2_Missense_Mutation_p.L389F	NM_004623	NP_004614	O95801	TTC4_HUMAN	tetratricopeptide repeat domain 4	378							binding				0						CAAGAATTTTCTCCGGGGGAG	0.507													52	83					0	0	0.014410	0	0
USP24	23358	broad.mit.edu	37	1	55559734	55559734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:55559734G>A	uc001cyg.3	-	49	5750	c.5750C>T	c.(5749-5751)TCA>TTA	p.S1917L		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	2077					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						TGACTGAGGTGAAATTTCTGG	0.433													6	26					0	0	0.001168	0	0
C8A	731	broad.mit.edu	37	1	57347273	57347274	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:57347273_57347274GG>AA	uc001cyo.2	+	5	752_753	c.620_621GG>AA	c.(619-621)CGG>CAA	p.R207Q		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	207	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AAATACTTTCGGAAACCCTACA	0.5													30	47					0	0	0.004672	0	0
C8B	732	broad.mit.edu	37	1	57415271	57415271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:57415271C>T	uc001cyp.2	-	6	888	c.821G>A	c.(820-822)CGA>CAA	p.R274Q	C8B_uc010oon.1_Missense_Mutation_p.R212Q|C8B_uc010ooo.1_Missense_Mutation_p.R222Q	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	274	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GTGTTTGCCTCGATCACTTTG	0.323													16	47					0	0	0.004990	0	0
DAB1	1600	broad.mit.edu	37	1	57476449	57476449	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:57476449C>T	uc001cys.1	-	16	2261	c.1587G>A	c.(1585-1587)CAG>CAA	p.Q529Q	DAB1_uc001cyt.1_Silent_p.Q527Q|DAB1_uc001cyq.1_Silent_p.Q527Q|DAB1_uc001cyr.1_Silent_p.Q443Q|DAB1_uc009vzw.1_Silent_p.Q511Q|DAB1_uc009vzx.1_Silent_p.Q529Q	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	562					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TGGATGAGGCCTGTGATCCAT	0.443													36	75					0	0	0.004878	0	0
INADL	10207	broad.mit.edu	37	1	62349916	62349916	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:62349916C>T	uc001dab.2	+	22	3081	c.2967C>T	c.(2965-2967)ATC>ATT	p.I989I	INADL_uc009waf.1_Silent_p.I989I|INADL_uc001daa.2_Silent_p.I989I|INADL_uc001dad.3_Silent_p.I686I|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	989					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CAGGCATGATCCCGAATGATG	0.373													49	70					0	0	0.014410	0	0
KANK4	163782	broad.mit.edu	37	1	62738893	62738893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:62738893G>A	uc001dah.3	-	3	2260	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	628										ovary(3)|skin(2)|lung(1)	6						CGGGGAGGAGGAGGAGGCCGG	0.577													22	35					0	0	0.004656	0	0
SGIP1	84251	broad.mit.edu	37	1	67147764	67147764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:67147764C>T	uc001dcr.2	+	15	1244	c.1027C>T	c.(1027-1029)CCA>TCA	p.P343S	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.P110S	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	343	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						ACCAGACAACCCAGCTGACTC	0.587													57	138					0	0	0.014410	0	0
LRRC7	57554	broad.mit.edu	37	1	70505117	70505117	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:70505117C>T	uc001dep.2	+	19	3526	c.3496C>T	c.(3496-3498)CTG>TTG	p.L1166L	LRRC7_uc009wbg.2_Silent_p.L450L|LRRC7_uc001deq.2_Silent_p.L407L	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1166						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GTCCCAGTTCCTGAAAAGGAA	0.517													33	49					0	0	0.003755	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74492517	74492517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:74492517G>A	uc001dfy.3	-	8	2047	c.1855C>T	c.(1855-1857)CCC>TCC	p.P619S	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	619										ovary(2)	2						AGTCCATTGGGAACTTTAAAG	0.289													22	40					0	0	0.005443	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74649224	74649224	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:74649224A>C	uc001dfy.3	-	2	337	c.145T>G	c.(145-147)TGC>GGC	p.C49G	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	49										ovary(2)	2						agagagatgcaagactgcaaa	0.149													21	32					0	0	0.008871	0	0
TNNI3K	51086	broad.mit.edu	37	1	74905258	74905258	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:74905258C>T	uc001dgf.1	+	20	2014	c.1963C>T	c.(1963-1965)CTG>TTG	p.L655L	TNNI3K_uc001dgd.2_Silent_p.L756L|TNNI3K_uc001dge.1_Silent_p.L756L	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	655	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TGCTCTGTGTCTGTGGGAAAT	0.468													25	41					0	0	0.003954	0	0
TNNI3K	51086	broad.mit.edu	37	1	74905279	74905279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:74905279G>A	uc001dgf.1	+	20	2035	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	TNNI3K_uc001dgd.2_Missense_Mutation_p.E763K|TNNI3K_uc001dge.1_Missense_Mutation_p.E763K	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	662	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TCTCACTGGCGAAATTCCATT	0.438													31	42					0	0	0.009535	0	0
SLC44A5	204962	broad.mit.edu	37	1	75707705	75707705	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:75707705C>T	uc001dgu.2	-	9	657	c.513G>A	c.(511-513)GCG>GCA	p.A171A	SLC44A5_uc001dgt.2_Silent_p.A171A|SLC44A5_uc001dgs.2_Silent_p.A129A|SLC44A5_uc001dgr.2_Silent_p.A129A|SLC44A5_uc010oqz.1_Silent_p.A210A|SLC44A5_uc010ora.1_Silent_p.A165A|SLC44A5_uc010orb.1_Silent_p.A41A	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	171	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TGGGAAAAATCGCTGTTGGAC	0.313													35	82					0	0	0.010771	0	0
ASB17	127247	broad.mit.edu	37	1	76397793	76397793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:76397793C>T	uc001dhe.1	-	1	324	c.184G>A	c.(184-186)GGT>AGT	p.G62S	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	62					intracellular signal transduction					ovary(1)	1						GCGTCAAAACCATCCAAGTCC	0.403													52	69					0	0	0.014410	0	0
USP33	23032	broad.mit.edu	37	1	78191401	78191401	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:78191401G>A	uc001dht.2	-	12	1622	c.1275C>T	c.(1273-1275)ATC>ATT	p.I425I	USP33_uc001dhs.2_Silent_p.I146I|USP33_uc001dhu.2_Silent_p.I394I|USP33_uc001dhv.2_Silent_p.I230I|USP33_uc001dhw.2_Silent_p.I425I	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	425					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TTGATGGAAGGATCTGTGGTG	0.368													22	30					0	0	0.014323	0	0
LPHN2	23266	broad.mit.edu	37	1	82456395	82456395	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:82456395C>T	uc001dit.3	+	21	3959	c.3778C>T	c.(3778-3780)CTG>TTG	p.L1260L	LPHN2_uc001dis.2_Silent_p.L240L|LPHN2_uc001diu.2_Silent_p.L1260L|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_3'UTR|LPHN2_uc001diw.2_Silent_p.L887L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1316	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CAACCCAGGGCTGGAGCTCCA	0.512													29	88					0	0	0.003271	0	0
TTLL7	79739	broad.mit.edu	37	1	84386840	84386840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:84386840C>T	uc001djc.2	-	12	1690	c.1294G>A	c.(1294-1296)GAG>AAG	p.E432K	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	432					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		GCGAGTCTCTCTTTCTGGAAA	0.328													16	54					0	0	0.004007	0	0
MCOLN2	255231	broad.mit.edu	37	1	85424294	85424294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:85424294G>A	uc001dkm.2	-	3	570	c.329C>T	c.(328-330)TCT>TTT	p.S110F	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	110						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		ATCTGTACCAGAATATCCTTT	0.363													46	69					0	0	0.010771	0	0
LMO4	8543	broad.mit.edu	37	1	87805770	87805770	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:87805770G>T	uc001dmi.2	+	4	1154	c.374G>T	c.(373-375)GGA>GTA	p.G125V	LMO4_uc001dmj.2_Missense_Mutation_p.G125V	NM_006769	NP_006760	P61968	LMO4_HUMAN	LIM domain only 4	125	LIM zinc-binding 2.				neural tube closure|transcription from RNA polymerase II promoter	transcription factor complex	sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding				0		Lung NSC(277;0.179)		all cancers(265;0.00456)|Epithelial(280;0.0148)|BRCA - Breast invasive adenocarcinoma(282;0.153)		CTGGTCCCGGGAGATCGGTTT	0.413													45	83					2.31418e-15	2.56262e-15	0.014410	1	0
HFM1	164045	broad.mit.edu	37	1	91740330	91740330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:91740330C>T	uc001doa.3	-	33	3725	c.3625G>A	c.(3625-3627)GAG>AAG	p.E1209K	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Missense_Mutation_p.E888K|HFM1_uc001dob.3_Missense_Mutation_p.E397K|HFM1_uc010osv.1_Missense_Mutation_p.E893K	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	1209							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		AAACCAAACTCTTTAAGGTCC	0.303													12	66					0	0	0.003163	0	0
BRDT	676	broad.mit.edu	37	1	92470044	92470044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:92470044C>T	uc001dok.3	+	17	2811	c.2462C>T	c.(2461-2463)TCC>TTC	p.S821F	BRDT_uc001dol.3_Missense_Mutation_p.S821F|BRDT_uc010osz.1_Missense_Mutation_p.S825F|BRDT_uc009wdf.2_Missense_Mutation_p.S748F|BRDT_uc010ota.1_Missense_Mutation_p.S775F|BRDT_uc010otb.1_Missense_Mutation_p.S775F|BRDT_uc001dom.3_Missense_Mutation_p.S821F	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	821					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		GTAATGAAATCCTCAGATGAG	0.358													46	70					0	0	0.014410	0	0
BRDT	676	broad.mit.edu	37	1	92470105	92470105	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:92470105G>A	uc001dok.3	+	17	2872	c.2523G>A	c.(2521-2523)CGG>CGA	p.R841R	BRDT_uc001dol.3_Silent_p.R841R|BRDT_uc010osz.1_Silent_p.R845R|BRDT_uc009wdf.2_Silent_p.R768R|BRDT_uc010ota.1_Silent_p.R795R|BRDT_uc010otb.1_Silent_p.R795R|BRDT_uc001dom.3_Silent_p.R841R	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	841					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TAAAAGCTCGGACACAGGAAC	0.388													36	76					0	0	0.004878	0	0
BCAR3	8412	broad.mit.edu	37	1	94041571	94041571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:94041571C>T	uc001dpz.2	-	8	2077	c.1802G>A	c.(1801-1803)AGA>AAA	p.R601K	BCAR3_uc001dqa.2_Missense_Mutation_p.R601K|BCAR3_uc001dqb.2_Missense_Mutation_p.R601K|BCAR3_uc001dpx.3_Missense_Mutation_p.R277K|BCAR3_uc001dpy.2_Missense_Mutation_p.R510K|BCAR3_uc009wdm.1_Missense_Mutation_p.R277K	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	601	Ras-GEF.				response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		CACTGCTCACCTTTCAATTAT	0.572													30	34					0	0	0.006320	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94337726	94337726	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:94337726G>A	uc001dqf.2	-	5	2007	c.1969C>T	c.(1969-1971)CTG>TTG	p.L657L	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	657					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		TCATTTTTCAGTTCATTTGTC	0.378													78	136					0	0	0.014410	0	0
ABCA4	24	broad.mit.edu	37	1	94471033	94471034	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:94471033_94471034GG>TA	uc001dqh.2	-	44	6214_6215	c.6110_6111CC>TA	c.(6109-6111)GCC>GTA	p.A2037V	ABCA4_uc001dqi.1_Missense_Mutation_p.A156V	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	2037	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CTCGAAGCCGGGCATAAAGGTA	0.416													22	63					0	0	0.004672	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650919	94650919	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:94650919G>A	uc001dqj.3	-	17	2268	c.1899C>T	c.(1897-1899)TTC>TTT	p.F633F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.F199F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	633	Phorbol-ester/DAG-type.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CAACACCTTGGAACACTACAA	0.353													29	67					0	0	0.009535	0	0
TMEM56	148534	broad.mit.edu	37	1	95657311	95657311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:95657311G>A	uc001drb.2	+	7	970	c.679G>A	c.(679-681)GAT>AAT	p.D227N	RWDD3_uc001drd.3_Intron|uc001dre.1_Intron|TMEM56_uc001drc.2_Missense_Mutation_p.D227N	NM_152487	NP_689700	Q96MV1	TMM56_HUMAN	transmembrane protein 56	227	TLC.|Helical; (Potential).					integral to membrane					0		all_lung(203;0.0232)|Lung NSC(277;0.0739)		all cancers(265;0.133)		TGTTGTTTTGGATGTGATGAA	0.383													21	136					0	0	0.010504	0	0
DPYD	1806	broad.mit.edu	37	1	97700483	97700483	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:97700483G>A	uc001drv.2	-	19	2504	c.2367C>T	c.(2365-2367)CCC>CCT	p.P789P		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	789					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TAGCCAAAATGGGAAATCCAG	0.468													17	33					0	0	0.004007	0	0
DPYD	1806	broad.mit.edu	37	1	98039412	98039412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:98039412C>T	uc001drv.2	-	11	1380	c.1243G>A	c.(1243-1245)GAA>AAA	p.E415K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	415					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTCCAGTTTCATCTTGCTCT	0.438													34	68					0	0	0.013726	0	0
VCAM1	7412	broad.mit.edu	37	1	101200150	101200150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:101200150C>T	uc001dti.2	+	8	2005	c.1885C>T	c.(1885-1887)CCA>TCA	p.P629S	VCAM1_uc001dtj.2_Missense_Mutation_p.P537S|VCAM1_uc010ouj.1_Missense_Mutation_p.P567S	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	629	Ig-like C2-type 7.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	TGGAAATGTTCCAGAAACATG	0.408													12	22					0	0	0.002450	0	0
COL11A1	1301	broad.mit.edu	37	1	103496800	103496800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:103496800C>T	uc001dul.2	-	5	970	c.652G>A	c.(652-654)GGG>AGG	p.G218R	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.G218R|COL11A1_uc001dun.2_Missense_Mutation_p.G218R|COL11A1_uc009weh.2_Missense_Mutation_p.G218R	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	218	TSP N-terminal.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TGAATGTCCCCCTGGGAAAAA	0.383													5	14					0	0	0.000602	0	0
VAV3	10451	broad.mit.edu	37	1	108145775	108145775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:108145775C>T	uc001dvk.1	-	23	2080	c.2026G>A	c.(2026-2028)GCA>ACA	p.A676T	VAV3_uc010ouu.1_Missense_Mutation_p.A80T|VAV3_uc001dvj.1_Missense_Mutation_p.A116T|VAV3_uc010ouv.1_Missense_Mutation_p.A80T|VAV3_uc010ouw.1_Missense_Mutation_p.A676T	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	676	SH2.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CTTTCCATTGCTCCAGCATAC	0.358													39	47					0	0	0.008740	0	0
SLC25A24	29957	broad.mit.edu	37	1	108700165	108700165	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:108700165C>T	uc001dvn.3	-	5	802	c.588G>A	c.(586-588)AGG>AGA	p.R196R	SLC25A24_uc001dvm.2_Silent_p.R177R	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	196	Solcar 1.|Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		CCAAAAGCTGCCTCCACCATT	0.443													14	77					0	0	0.002450	0	0
CELSR2	1952	broad.mit.edu	37	1	109795343	109795343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:109795343G>A	uc001dxa.3	+	1	2703	c.2642G>A	c.(2641-2643)CGA>CAA	p.R881Q		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	881	Extracellular (Potential).|Cadherin 7.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding	p.R881*(1)		ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		AGGCTGGATCGAGAGAACGTG	0.572													233	142					0	0	0.014410	0	0
CELSR2	1952	broad.mit.edu	37	1	109803663	109803663	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:109803663G>A	uc001dxa.3	+	3	4020	c.3959_splice	c.e3-1	p.G1320_splice		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2						dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		CTCTTGTCCAGGTGAGCACTG	0.607													102	54					0	0	0.014410	0	0
SLC6A17	388662	broad.mit.edu	37	1	110734611	110734611	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:110734611C>T	uc009wfq.2	+	7	1343	c.882C>T	c.(880-882)GAC>GAT	p.D294D	SLC6A17_uc001dze.1_5'Flank	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	294	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		AGATGCTGGACCCCCAGGTGT	0.547													36	20					0	0	0.007835	0	0
SLC6A17	388662	broad.mit.edu	37	1	110737277	110737277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:110737277C>T	uc009wfq.2	+	9	1837	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F	SLC6A17_uc001dze.1_Missense_Mutation_p.S57F	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	459	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CCGTTCTGGTCCGTCATGTTC	0.612													18	23					0	0	0.008871	0	0
C1orf103	55791	broad.mit.edu	37	1	111492641	111492641	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:111492641A>G	uc001eaa.2	-	3	1957	c.1701T>C	c.(1699-1701)GAT>GAC	p.D567D	C1orf103_uc001dzz.2_Silent_p.D31D|C1orf103_uc001eab.2_Silent_p.D31D|C1orf103_uc001eac.1_Silent_p.D31D	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		TAAATTCAGCATCACTCTTCA	0.378													22	16					0	0	0.014323	0	0
LOC149620	149620	broad.mit.edu	37	1	111825603	111825603	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:111825603G>A	uc009wgb.2	+	4		c.1122G>A				NR_003928				Homo sapiens CHIA-like pseudogene, mRNA (cDNA clone IMAGE:5176731).												0						TCCTGTACAGGAAATGCGTGA	0.448													3	1					0	0	0.004672	0	0
ADORA3	140	broad.mit.edu	37	1	112026335	112026335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:112026335C>T	uc001ebf.2	-	6	1785	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	ADORA3_uc001ebg.3_Missense_Mutation_p.E259K	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GGAGCCATTTCCTTTGGAGTC	0.423													10	6					0	0	0.008291	0	0
KCND3	3752	broad.mit.edu	37	1	112525046	112525046	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:112525046C>T	uc001ebu.1	-	2	783	c.303G>A	c.(301-303)GGG>GGA	p.G101G	KCND3_uc001ebv.1_Silent_p.G101G	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	101	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AGTGCAGCTTCCCCGTGCGGT	0.607													25	16					0	0	0.006320	0	0
MOV10	4343	broad.mit.edu	37	1	113234343	113234343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:113234343C>T	uc001eck.2	+	6	1163	c.893C>T	c.(892-894)CCC>CTC	p.P298L	MOV10_uc001ecl.2_Missense_Mutation_p.P298L|MOV10_uc001ecn.2_Missense_Mutation_p.P298L|MOV10_uc001ecm.2_Missense_Mutation_p.P238L|MOV10_uc009wgj.1_Missense_Mutation_p.P238L	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	298					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		TACCCACCTCCCCGCCTCAGG	0.547													40	31					0	0	0.006999	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114448322	114448322	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:114448322G>A	uc001eeg.2	+	1	285	c.114G>A	c.(112-114)GTG>GTA	p.V38V	AP4B1_uc001eeb.2_5'Flank|AP4B1_uc001eec.2_5'Flank|AP4B1_uc001eed.2_5'Flank|AP4B1_uc010owp.1_5'Flank|AP4B1_uc010owq.1_5'Flank|DCLRE1B_uc001eeh.2_5'UTR|DCLRE1B_uc001eei.2_5'UTR	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	38					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCACACCGTGGGCCTGTCTA	0.627								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function			OREG0004772	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	23	39					0	0	0.003330	0	0
OLFML3	56944	broad.mit.edu	37	1	114523737	114523737	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:114523737C>T	uc001eer.1	+	3	676	c.567C>T	c.(565-567)TTC>TTT	p.F189F	OLFML3_uc001ees.1_Silent_p.F169F|OLFML3_uc001eet.1_Silent_p.F45F	NM_020190	NP_064575	Q9NRN5	OLFL3_HUMAN	olfactomedin-like 3 precursor	189	Olfactomedin-like.				multicellular organismal development	extracellular region					0	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGCGTGACTTCACCCTTGCCA	0.547													20	32					0	0	0.007413	0	0
AMPD1	270	broad.mit.edu	37	1	115218614	115218614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:115218614G>A	uc001efe.1	-	11	1483	c.1399C>T	c.(1399-1401)CGT>TGT	p.R467C	AMPD1_uc001eff.1_Missense_Mutation_p.R463C	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	467					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TTCTTGGAACGGAACACATCA	0.428													38	71					0	0	0.006230	0	0
SYCP1	6847	broad.mit.edu	37	1	115487547	115487547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:115487547G>A	uc001efr.2	+	25	2307	c.2098G>A	c.(2098-2100)GAT>AAT	p.D700N	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.D700N|SYCP1_uc009wgw.2_Missense_Mutation_p.D700N	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	700	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAAGAAATTGATAAGCGATG	0.264													15	25					0	0	0.006122	0	0
CASQ2	845	broad.mit.edu	37	1	116311134	116311134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:116311134C>T	uc001efx.3	-	1	293	c.29G>A	c.(28-30)GGG>GAG	p.G10E	CASQ2_uc010owu.1_Missense_Mutation_p.G10E	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	10					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		AAAATAAATCCCCACAATAAA	0.438													15	25					0	0	0.004007	0	0
HMGCS2	3158	broad.mit.edu	37	1	120307109	120307109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:120307109C>T	uc001eid.2	-	2	296	c.245G>A	c.(244-246)GGA>GAA	p.G82E	HMGCS2_uc010oxj.1_Missense_Mutation_p.G82E|HMGCS2_uc001eie.2_5'UTR	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	82					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TGTATACTTTCCTGCTTCCAC	0.552													238	417					0	0	0.014410	0	0
NBPF9	400818	broad.mit.edu	37	1	144220790	144220790	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:144220790C>T	uc010oxr.1	+	19	2167	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L	NBPF9_uc010oxn.1_Silent_p.L592L|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxt.1_Silent_p.L509L|NBPF9_uc001ekg.1_Silent_p.L21L|NBPF9_uc001ekk.1_Silent_p.L265L|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.L21L|uc010oxz.1_Silent_p.L509L	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	694						cytoplasm					0						TTTCCAGGCTCAGCAGGGAGC	0.448													19	212					0	0	0.012319	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144917869	144917869	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:144917869A>G	uc001elw.3	-	11	1708	c.1417T>C	c.(1417-1419)TTG>CTG	p.L473L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.L539L|PDE4DIP_uc001emc.1_Silent_p.L473L|PDE4DIP_uc001emd.1_Silent_p.L473L|PDE4DIP_uc001emb.1_Silent_p.L636L|PDE4DIP_uc001eme.1_Silent_p.L2L|PDE4DIP_uc001emf.1_Silent_p.L260L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	473	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTCTCAAGCAACATTTCATTT	0.363			T	PDGFRB	MPD								75	379					0	0	0.014410	0	0
ANKRD35	148741	broad.mit.edu	37	1	145555774	145555775	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:145555774_145555775CC>TT	uc001eob.1	+	2	230_231	c.122_123CC>TT	c.(121-123)TCC>TTT	p.S41F	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_5'UTR	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	41										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCCCTGGCCTCCAGGAAATCTG	0.624													12	32					0	0	0.004672	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561251	145561251	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:145561251G>A	uc001eob.1	+	10	1047	c.939G>A	c.(937-939)GAG>GAA	p.E313E	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.E156E	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	313	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTCGGCTGGAGCAGGAGCTGG	0.557													8	12					0	0	0.003080	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561910	145561910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:145561910C>T	uc001eob.1	+	10	1706	c.1598C>T	c.(1597-1599)GCC>GTC	p.A533V	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.A376V	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	533	Poly-Ala.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCAGCAGCTGCCTGGGAGAAG	0.632													53	106					0	0	0.014410	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562252	145562252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:145562252C>T	uc001eob.1	+	10	2048	c.1940C>T	c.(1939-1941)TCC>TTC	p.S647F	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.S490F	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	647	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GAGCTACAGTCCCTGAGCCAG	0.592													37	81					0	0	0.006230	0	0
GJA8	2703	broad.mit.edu	37	1	147380929	147380929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:147380929G>A	uc001epu.1	+	2	910	c.847G>A	c.(847-849)GAG>AAG	p.E283K		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	283	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCCCTTGACCGAGGTTGGGAT	0.547													6	62					0	0	0.006214	0	0
LOC645166	645166	broad.mit.edu	37	1	148932901	148932901	+	RNA	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:148932901C>G	uc010pbc.1	+	2		c.216C>G			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CAGTCTGCGGCCAAGACTCCG	0.612													7	118					0	0	0.008291	0	0
LOC645166	645166	broad.mit.edu	37	1	148932910	148932910	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:148932910C>T	uc010pbc.1	+	2		c.225C>T			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						GCCAAGACTCCGTCCTGCAAG	0.612													7	112					0	0	0.003080	0	0
HIST2H2BE	8349	broad.mit.edu	37	1	149857848	149857848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:149857848C>T	uc001etc.2	-	1	385	c.343G>A	c.(343-345)GGC>AGC	p.G115S	HIST2H2AC_uc001etd.2_5'Flank	NM_003528	NP_003519	Q16778	H2B2E_HUMAN	histone cluster 2, H2be	115					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCCTTGGTGCCCTCGGACACG	0.672													16	38					0	0	0.004007	0	0
SV2A	9900	broad.mit.edu	37	1	149885369	149885369	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:149885369C>T	uc001etg.2	-	2	515	c.24G>A	c.(22-24)CGG>CGA	p.R8R	SV2A_uc001eth.2_Silent_p.R8R	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	8	Cytoplasmic (Potential).|Interaction with SYT1 (By similarity).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TGAAAGCTGCCCGGTCTCGGA	0.527													24	73					0	0	0.005443	0	0
SF3B4	10262	broad.mit.edu	37	1	149895501	149895501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:149895501G>A	uc001etj.1	-	6	1259	c.1208C>T	c.(1207-1209)CCA>CTA	p.P403L	SF3B4_uc001eti.1_Missense_Mutation_p.P167L|SF3B4_uc001etk.1_Missense_Mutation_p.P403L	NM_005850	NP_005841	Q15427	SF3B4_HUMAN	splicing factor 3b, subunit 4	403						nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Breast(34;0.0009)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			GGGTCTGGGTGGAGGGAGAGG	0.622													14	16					0	0	0.004007	0	0
CTSS	1520	broad.mit.edu	37	1	150724443	150724443	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:150724443G>A	uc001evn.2	-	5	574	c.441C>T	c.(439-441)GCC>GCT	p.A147A	CTSS_uc010pcj.1_Silent_p.A97A|CTSS_uc001evo.1_Silent_p.A147A	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	147					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			GTGCTTCCAGGGCCCCCACAG	0.478													20	36					0	0	0.008871	0	0
FAM63A	55793	broad.mit.edu	37	1	150975030	150975031	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:150975030_150975031GG>AA	uc001ewf.2	-	3	1747_1748	c.63_64CC>TT	c.(61-66)ATCCCT>ATTTCT	p.P22S	FAM63A_uc001ewc.2_Intron|FAM63A_uc010pcm.1_Intron|FAM63A_uc001ewd.2_Intron|FAM63A_uc001ewe.2_Intron|FAM63A_uc010pcn.1_Missense_Mutation_p.P70S|FAM63A_uc001ewg.2_Missense_Mutation_p.P22S	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	22							protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGGTTTTCAGGGATGACTGCTT	0.569													49	119					0	0	0.004672	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151214659	151214659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:151214659C>T	uc001exj.2	+	13	1876	c.1424C>T	c.(1423-1425)TCC>TTC	p.S475F	PIP5K1A_uc001exi.2_Missense_Mutation_p.S462F|PIP5K1A_uc010pcu.1_Missense_Mutation_p.S435F|PIP5K1A_uc001exk.2_Intron|PIP5K1A_uc010pcv.1_Intron	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	475					phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			CGAGCAGGCTCCAGTGGCAAC	0.522													73	127					0	0	0.014410	0	0
TDRKH	11022	broad.mit.edu	37	1	151755386	151755386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:151755386C>T	uc009wnb.1	-	2	295	c.113G>A	c.(112-114)AGG>AAG	p.R38K	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.R38K|TDRKH_uc001ezc.3_Missense_Mutation_p.R38K|TDRKH_uc001eza.3_Missense_Mutation_p.R38K|TDRKH_uc001ezd.3_Missense_Mutation_p.R38K|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	38							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TCTGCTTTCCCTATACCTGCG	0.473													82	114					0	0	0.014410	0	0
HRNR	388697	broad.mit.edu	37	1	152185557	152185557	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:152185557G>A	uc001ezt.1	-	3	8624	c.8548C>T	c.(8548-8550)CAG>TAG	p.Q2850*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2850					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATTATTCACTGATAAAAGTAG	0.348													23	25					0	0	0.012319	0	0
HRNR	388697	broad.mit.edu	37	1	152191971	152191971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:152191971C>T	uc001ezt.1	-	3	2210	c.2134G>A	c.(2134-2136)GGT>AGT	p.G712S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	712	7.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACTGTAACCAGAGGACTGC	0.552													66	122					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152275195	152275195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:152275195C>T	uc001ezu.1	-	3	12203	c.12167G>A	c.(12166-12168)AGA>AAA	p.R4056K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	4056					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTAATAGTATCTCTGTGACTG	0.328									Ichthyosis				22	37					0	0	0.003330	0	0
FLG	2312	broad.mit.edu	37	1	152286887	152286887	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:152286887T>A	uc001ezu.1	-	3	511	c.475A>T	c.(475-477)AAA>TAA	p.K159*	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	159					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTTCTTTCTTTTTTTTCAGAA	0.348									Ichthyosis				36	65					0	0	0.004289	0	0
LCE1F	353137	broad.mit.edu	37	1	152748928	152748928	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:152748928G>A	uc010pdv.1	+	1	81	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	27	Pro-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gccccacaccgaagtgccccc	0.393													9	35					0	0	0.006214	0	0
DENND4B	9909	broad.mit.edu	37	1	153906756	153906756	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:153906756G>A	uc001fdd.1	-	19	3197	c.2796C>T	c.(2794-2796)TCC>TCT	p.S932S	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	932										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GGCGAGTAGGGGAAGGGCGCT	0.587													5	9					0	0	0.001168	0	0
TDRD10	126668	broad.mit.edu	37	1	154517326	154517326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:154517326G>A	uc009wow.2	+	11	1691	c.853G>A	c.(853-855)GGA>AGA	p.G285R	TDRD10_uc001ffd.2_Missense_Mutation_p.G285R|TDRD10_uc001ffe.2_Missense_Mutation_p.G206R	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	285	Tudor.						nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			CATTGATTTTGGACAGTTGGC	0.552													18	45					0	0	0.007413	0	0
PKLR	5313	broad.mit.edu	37	1	155264092	155264092	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:155264092G>A	uc001fkb.3	-	7	1089	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Silent_p.F319F	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	350					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	TCTGAGCCAGGAAAACCTTCT	0.572													9	47					0	0	0.004482	0	0
RXFP4	339403	broad.mit.edu	37	1	155911999	155911999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:155911999G>A	uc010pgs.1	+	1	520	c.499G>A	c.(499-501)GCG>ACG	p.A167T		NM_181885	NP_871001	Q8TDU9	RL3R2_HUMAN	relaxin 3 receptor 2	167	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	angiotensin type II receptor activity				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGCAGTGTGGGCGGCGGCTGC	0.672													41	44					0	0	0.009718	0	0
IQGAP3	128239	broad.mit.edu	37	1	156524173	156524173	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:156524173C>T	uc001fpf.2	-	13	1377	c.1302G>A	c.(1300-1302)CAG>CAA	p.Q434Q	IQGAP3_uc009wsb.1_Silent_p.Q391Q	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	434					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGAGCTCCTCCTGGCCAAGCT	0.587													13	21					0	0	0.004990	0	0
PEAR1	375033	broad.mit.edu	37	1	156882722	156882722	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:156882722G>A	uc001fqj.1	+	18	2486	c.2370G>A	c.(2368-2370)CTG>CTA	p.L790L	PEAR1_uc001fqk.1_Silent_p.L415L	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	790						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					ACCACCACCTGGCTGTGGCTT	0.612													40	52					0	0	0.011902	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156907240	156907240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:156907240G>A	uc001fqo.2	-	38	5161	c.4121C>T	c.(4120-4122)ACC>ATC	p.T1374I	ARHGEF11_uc010phu.1_Missense_Mutation_p.T790I|ARHGEF11_uc001fqn.2_Missense_Mutation_p.T1414I|MIR765_hsa-mir-765|MI0005116_5'Flank	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1374					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGAGTGGTCGGTGCTTGAGTC	0.587													21	43					0	0	0.012319	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156928584	156928584	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:156928584G>A	uc001fqo.2	-	16	2372	c.1332C>T	c.(1330-1332)CTC>CTT	p.L444L	ARHGEF11_uc001fqn.2_Silent_p.L484L|ARHGEF11_uc001fqp.1_5'Flank	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	444	RGSL.|Potential.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGCGCTCTCGGAGAGGGTCCC	0.542													18	35					0	0	0.004990	0	0
FCRL1	115350	broad.mit.edu	37	1	157766900	157766900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:157766900C>T	uc001frg.2	-	10	1322	c.1209G>A	c.(1207-1209)ATG>ATA	p.M403I	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.M402I|FCRL1_uc001fri.2_Nonsense_Mutation_p.W361*|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	403	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCTTGTCCTCCATATGTGTCC	0.328													15	50					0	0	0.007413	0	0
KIRREL	55243	broad.mit.edu	37	1	158047787	158047787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158047787C>T	uc001frn.3	+	3	613	c.209C>T	c.(208-210)CCA>CTA	p.P70L	KIRREL_uc010pib.1_Intron|KIRREL_uc009wsq.2_Missense_Mutation_p.P9L	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	70	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					GCAGCCTGGCCACGGTACCGG	0.592													34	60					0	0	0.006230	0	0
OR10K2	391107	broad.mit.edu	37	1	158389972	158389972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158389972G>A	uc010pii.1	-	1	685	c.685C>T	c.(685-687)CCT>TCT	p.P229S		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AGTGTGGAAGGAAACTGAAGT	0.448													25	59					0	0	0.004656	0	0
OR10K2	391107	broad.mit.edu	37	1	158390183	158390183	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158390183G>A	uc010pii.1	-	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AGGATGTGATGATCTGTGCAA	0.493													26	34					0	0	0.003954	0	0
OR10K1	391109	broad.mit.edu	37	1	158435686	158435686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158435686C>T	uc010pij.1	+	1	335	c.335C>T	c.(334-336)TCC>TTC	p.S112F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCCTCTCACTCCTTCCTGCTG	0.522													55	108					0	0	0.014410	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577052	158577052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158577052C>T	uc010pio.1	+	1	824	c.824C>T	c.(823-825)GCC>GTC	p.A275V		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CAGCTTATTGCCATGACCTAT	0.473													104	197					0	0	0.014410	0	0
SPTA1	6708	broad.mit.edu	37	1	158592810	158592810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158592810C>T	uc001fst.1	-	43	6282	c.6083G>A	c.(6082-6084)AGA>AAA	p.R2028K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2028	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CAATTTCTGTCTGTGGACTGC	0.458													83	140					0	0	0.014410	0	0
SPTA1	6708	broad.mit.edu	37	1	158607988	158607988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158607988G>A	uc001fst.1	-	36	5223	c.5024C>T	c.(5023-5025)TCC>TTC	p.S1675F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1675	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGTCCCGCTGGAGAGCAAATC	0.423													18	33					0	0	0.010504	0	0
OR6K6	128371	broad.mit.edu	37	1	158725232	158725232	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158725232C>T	uc001fsw.1	+	1	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	209	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TCTGTGATTTCACACCTGTGC	0.502													21	42					0	0	0.008871	0	0
OR6N2	81442	broad.mit.edu	37	1	158747040	158747040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:158747040G>A	uc010pir.1	-	1	386	c.386C>T	c.(385-387)CCC>CTC	p.P129L		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					GTAGTGGAGGGGCCGACAAAT	0.512													29	51					0	0	0.009535	0	0
DARC	2532	broad.mit.edu	37	1	159176032	159176032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:159176032C>T	uc001fto.2	+	2	1043	c.803C>T	c.(802-804)TCC>TTC	p.S268F	DARC_uc001ftp.3_Missense_Mutation_p.S270F	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	268	Extracellular (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					CTGGTGAGGTCCAAGCTGTTG	0.567													68	111					0	0	0.014410	0	0
OR10J1	26476	broad.mit.edu	37	1	159410507	159410507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:159410507C>T	uc010piv.1	+	1	959	c.959C>T	c.(958-960)TCC>TTC	p.S320F	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	320	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GGGAAGTTTTCCTGACCATGT	0.493													30	49					0	0	0.012213	0	0
FCRL6	343413	broad.mit.edu	37	1	159779293	159779293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:159779293C>T	uc001fud.3	+	5	748	c.706C>T	c.(706-708)CCG>TCG	p.P236S	FCRL6_uc001fuc.2_Missense_Mutation_p.P243S|FCRL6_uc009wsz.1_Missense_Mutation_p.P141S|FCRL6_uc009wta.2_Missense_Mutation_p.P236S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	236	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GGGCTCCCCTCCGATCCTGTA	0.587													23	37					0	0	0.003330	0	0
IGSF9	57549	broad.mit.edu	37	1	159897580	159897581	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:159897580_159897581GG>AA	uc001fur.2	-	20	3525_3526	c.3327_3328CC>TT	c.(3325-3330)TCCCGG>TCTTGG	p.R1110W	IGSF9_uc001fuq.2_Missense_Mutation_p.R1094W|CCDC19_uc001ful.2_5'Flank|TAGLN2_uc001fun.1_5'Flank|TAGLN2_uc001fuo.1_5'Flank|TAGLN2_uc010piy.1_5'Flank|IGSF9_uc001fup.2_Missense_Mutation_p.R256W	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	1110	Cytoplasmic (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GGTCTGAGCCGGGAGCTGGCCA	0.594													36	64					0	0	0.004672	0	0
VANGL2	57216	broad.mit.edu	37	1	160389330	160389330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:160389330C>T	uc001fwb.1	+	5	1030	c.731C>T	c.(730-732)CCT>CTT	p.P244L	VANGL2_uc001fwc.1_Missense_Mutation_p.P244L	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	244	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGCTCCAGCCTCAGTTCACG	0.642													20	35					0	0	0.012319	0	0
SLAMF7	57823	broad.mit.edu	37	1	160720129	160720129	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:160720129C>T	uc001fwq.2	+	4	700	c.685C>T	c.(685-687)CTG>TTG	p.L229L	SLAMF7_uc010pjn.1_Silent_p.L135L|SLAMF7_uc001fws.2_Silent_p.L122L|SLAMF7_uc001fwr.2_Silent_p.L229L|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	229	Helical; (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CATGGTCCTCCTGTGTCTCCT	0.517													49	181					0	0	0.014410	0	0
LY9	4063	broad.mit.edu	37	1	160769762	160769762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:160769762C>T	uc001fwu.2	+	2	394	c.344C>T	c.(343-345)TCC>TTC	p.S115F	LY9_uc001fwt.2_Missense_Mutation_p.S115F|LY9_uc010pjs.1_Missense_Mutation_p.S115F|LY9_uc001fwv.2_Missense_Mutation_p.S115F|LY9_uc001fww.2_Missense_Mutation_p.S115F|LY9_uc001fwx.2_Missense_Mutation_p.S115F|LY9_uc001fwy.1_Missense_Mutation_p.S17F	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	115	Extracellular (Potential).|Ig-like V-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TGGAGTTACTCCCTGTGCATC	0.463													42	83					0	0	0.008740	0	0
PVRL4	81607	broad.mit.edu	37	1	161049491	161049491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:161049491C>T	uc001fxo.2	-	2	627	c.328G>A	c.(328-330)GGC>AGC	p.G110S		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	110	Ig-like V-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			AGCACTGAGCCGTCCAGGGGG	0.692													13	12					0	0	0.002450	0	0
DUSP27	92235	broad.mit.edu	37	1	167096871	167096871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:167096871G>A	uc001geb.1	+	5	2503	c.2503G>A	c.(2503-2505)GAA>AAA	p.E835K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	835					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GGACCTAAAGGAACTTGGCCG	0.522													17	56					0	0	0.004990	0	0
ADCY10	55811	broad.mit.edu	37	1	167815465	167815465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:167815465G>A	uc001ger.2	-	20	2772	c.2474C>T	c.(2473-2475)TCC>TTC	p.S825F	ADCY10_uc009wvk.2_Missense_Mutation_p.S733F|ADCY10_uc010plj.1_Missense_Mutation_p.S672F|ADCY10_uc009wvl.2_Missense_Mutation_p.S824F	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	825					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CATTTGGTGGGAAAGTCTCAT	0.418													59	93					0	0	0.014410	0	0
XCL1	6375	broad.mit.edu	37	1	168549308	168549308	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:168549308G>A	uc001gfo.1	+	2	89	c.69G>A	c.(67-69)GGG>GGA	p.G23G		NM_002995	NP_002986	P47992	XCL1_HUMAN	chemokine (C motif) ligand 1	23					CD4-positive, alpha-beta T cell proliferation|CD8-positive, alpha-beta T cell proliferation|cell-cell signaling|cellular response to interleukin-4|cellular response to transforming growth factor beta stimulus|immunoglobulin production in mucosal tissue|lymphocyte chemotaxis|negative regulation of interferon-gamma production|negative regulation of interleukin-2 production|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T cell cytokine production|negative regulation of T-helper 1 cell activation|negative regulation of transcription, DNA-dependent|neutrophil chemotaxis|positive regulation of activated T cell proliferation|positive regulation of B cell chemotaxis|positive regulation of granzyme A production|positive regulation of granzyme B production|positive regulation of interleukin-10 production|positive regulation of natural killer cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of T cell chemotaxis|positive regulation of T cell cytokine production|positive regulation of T cell mediated cytotoxicity|positive regulation of thymocyte migration|positive regulation of transforming growth factor-beta production|regulation of inflammatory response|release of sequestered calcium ion into cytosol|response to virus|T-helper 1 cell cytokine production|T-helper 2 cell cytokine production	extracellular space	chemokine activity|protein homodimerization activity				0	all_hematologic(923;0.208)					CAGGTGTAGGGAGTGAAGTCT	0.433													35	42					0	0	0.004289	0	0
F5	2153	broad.mit.edu	37	1	169509984	169509984	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:169509984G>A	uc001ggg.1	-	13	4489	c.4344C>T	c.(4342-4344)CTC>CTT	p.L1448L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1448	2-30.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGAGATCCGGGAGAAGGGTGG	0.473													27	38					0	0	0.004656	0	0
SELP	6403	broad.mit.edu	37	1	169586609	169586609	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:169586609G>A	uc001ggi.3	-	3	203	c.138C>T	c.(136-138)TAC>TAT	p.Y46Y	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Silent_p.Y46Y	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	46	Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CTTTTGTGCTGTAATGATAAG	0.418													32	70					0	0	0.003755	0	0
SELL	6402	broad.mit.edu	37	1	169676557	169676557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:169676557C>T	uc001ggk.2	-	4	704	c.506G>A	c.(505-507)GGA>GAA	p.G169E	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.G122E|SELL_uc001ggl.1_Missense_Mutation_p.G182E	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	169	EGF-like.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					TACACATTCTCCATGGCCACT	0.393													17	24					0	0	0.007413	0	0
GORAB	92344	broad.mit.edu	37	1	170513928	170513928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:170513928G>A	uc001gha.2	+	4	706	c.679G>A	c.(679-681)GAC>AAC	p.D227N	GORAB_uc001ggz.3_Missense_Mutation_p.D227N|GORAB_uc009wvx.2_Missense_Mutation_p.D47N|GORAB_uc001ghb.2_Missense_Mutation_p.D47N|GORAB_uc001ghc.2_Missense_Mutation_p.D47N|GORAB_uc001ghd.2_Missense_Mutation_p.D20N	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	227	Necessary for interaction with RCHY1.|Potential.					Golgi apparatus|nucleus					0						GGTGTCAGCTGACATTGGAAT	0.433													62	126					0	0	0.014410	0	0
FMO3	2328	broad.mit.edu	37	1	171079947	171079947	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:171079947C>T	uc001ghi.2	+	6	747	c.636C>T	c.(634-636)ATC>ATT	p.I212I	FMO3_uc001ghh.2_Silent_p.I212I|FMO3_uc010pmb.1_Silent_p.I192I|FMO3_uc010pmc.1_Silent_p.I149I	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	212					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGGTCATGATCAGTTCCAGAA	0.343													27	110					0	0	0.006320	0	0
FMO3	2328	broad.mit.edu	37	1	171079999	171079999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:171079999C>T	uc001ghi.2	+	6	799	c.688C>T	c.(688-690)CCT>TCT	p.P230S	FMO3_uc001ghh.2_Missense_Mutation_p.P230S|FMO3_uc010pmb.1_Missense_Mutation_p.P210S|FMO3_uc010pmc.1_Missense_Mutation_p.P167S	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	230					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAATGGTTATCCTTGGGACAT	0.463													66	95					0	0	0.014410	0	0
FMO3	2328	broad.mit.edu	37	1	171086461	171086461	+	Missense_Mutation	SNP	C	T	T	rs61008738	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:171086461C>T	uc001ghi.2	+	9	1589	c.1478C>T	c.(1477-1479)TCG>TTG	p.S493L	FMO3_uc001ghh.2_Missense_Mutation_p.S493L|FMO3_uc010pmb.1_Missense_Mutation_p.S473L|FMO3_uc010pmc.1_Missense_Mutation_p.S430L	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	493					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGGGACCGGTCGTTGAAACCC	0.517													24	40					0	0	0.002780	0	0
FMO4	2329	broad.mit.edu	37	1	171310799	171310799	+	Nonsense_Mutation	SNP	C	T	T	rs145740321		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:171310799C>T	uc001gho.2	+	10	1715	c.1498C>T	c.(1498-1500)CGA>TGA	p.R500*		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	500					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					TTTAAAAACTCGAATTGTCCC	0.478													17	21					0	0	0.004007	0	0
DNM3	26052	broad.mit.edu	37	1	172357743	172357743	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:172357743G>C	uc001gie.2	+	20	2492	c.2316G>C	c.(2314-2316)AGG>AGC	p.R772S	DNM3_uc001gif.2_Missense_Mutation_p.R768S|DNM3_uc001gih.1_Missense_Mutation_p.R128S	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	778					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CAACCCAAAGGAGGCCAACAC	0.542													6	19					0	0	0.001984	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526549	173526549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:173526549C>T	uc001giz.2	-	10	1568	c.1145G>A	c.(1144-1146)GGA>GAA	p.G382E	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	382	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATTAAAAACTCCTTTAATTCC	0.363													71	114					0	0	0.014410	0	0
TNN	63923	broad.mit.edu	37	1	175046721	175046721	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:175046721T>C	uc001gkl.1	+	2	280	c.167T>C	c.(166-168)GTT>GCT	p.V56A	TNN_uc010pmx.1_Missense_Mutation_p.V56A	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	56					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TCTGCCTTGGTTCAGGTTGAC	0.607													12	21					0	0	0.001855	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738778	176738778	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:176738778G>C	uc001gkz.2	+	16	5523	c.4359G>C	c.(4357-4359)TGG>TGC	p.W1453C	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1453	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTGGGCACTGGGACCAGAATG	0.478													26	72					0	0	0.003954	0	0
PAPPA2	60676	broad.mit.edu	37	1	176809389	176809389	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:176809389C>T	uc001gkz.2	+	22	6447	c.5283C>T	c.(5281-5283)TCC>TCT	p.S1761S	PAPPA2_uc009www.2_RNA|uc001gla.1_5'Flank	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1761					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTGCTCTTCCACACTCTCCT	0.547													41	59					0	0	0.009718	0	0
FAM5B	57795	broad.mit.edu	37	1	177249703	177249703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:177249703C>T	uc001glf.2	+	8	1703	c.1391C>T	c.(1390-1392)CCC>CTC	p.P464L	FAM5B_uc001glg.2_Missense_Mutation_p.P359L	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	464						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GGCGAAGGGCCCGCGTGTGCC	0.647													12	20					0	0	0.013537	0	0
RASAL2	9462	broad.mit.edu	37	1	178410699	178410699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:178410699G>A	uc001glr.2	+	5	525	c.400G>A	c.(400-402)GGA>AGA	p.G134R	RASAL2_uc001glq.2_Missense_Mutation_p.G282R	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	134	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						CTACTTAAGTGGAAGTAAATG	0.388													18	25					0	0	0.008871	0	0
TDRD5	163589	broad.mit.edu	37	1	179609005	179609005	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:179609005C>T	uc001gnf.1	+	10	1802	c.1552C>T	c.(1552-1554)CGA>TGA	p.R518*	TDRD5_uc010pnp.1_Nonsense_Mutation_p.R518*|TDRD5_uc001gnh.1_Nonsense_Mutation_p.R73*	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	518					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GGTTTCTGATCGATATGTCAT	0.383													54	96					0	0	0.014410	0	0
CACNA1E	777	broad.mit.edu	37	1	181480569	181480569	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:181480569C>T	uc001gow.2	+	3	600	c.435C>T	c.(433-435)GCC>GCT	p.A145A	CACNA1E_uc009wxr.2_Silent_p.A52A|CACNA1E_uc009wxs.2_Silent_p.A52A	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	145	I.|Helical; Name=S2 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AAATTGTGGCCCTGGGGTTCA	0.488													81	148					0	0	0.014410	0	0
CACNA1E	777	broad.mit.edu	37	1	181701970	181701970	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:181701970G>A	uc001gow.2	+	20	2913	c.2748G>A	c.(2746-2748)CAG>CAA	p.Q916Q	CACNA1E_uc009wxs.2_Silent_p.Q804Q|CACNA1E_uc001gox.1_Silent_p.Q142Q|CACNA1E_uc009wxt.2_Silent_p.Q142Q	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	916	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGCACAGGCAGAGCCAACGGC	0.662													25	77					0	0	0.006320	0	0
CACNA1E	777	broad.mit.edu	37	1	181745302	181745302	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:181745302C>T	uc001gow.2	+	38	5370	c.5205C>T	c.(5203-5205)ATC>ATT	p.I1735I	CACNA1E_uc009wxs.2_Silent_p.I1623I|CACNA1E_uc001gox.1_Silent_p.I961I|CACNA1E_uc009wxt.2_Silent_p.I961I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1735	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity	p.I1735I(1)		ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACTCCTCCATCCTGGGGCCTC	0.607													62	97					0	0	0.014410	0	0
CACNA1E	777	broad.mit.edu	37	1	181767550	181767550	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:181767550C>T	uc001gow.2	+	47	6558	c.6393C>T	c.(6391-6393)TCC>TCT	p.S2131S	CACNA1E_uc009wxs.2_Silent_p.S2019S|CACNA1E_uc009wxt.2_Silent_p.S1400S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2174	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCTACAGCTCCCTGATTCGAC	0.632													31	64					0	0	0.010818	0	0
CACNA1E	777	broad.mit.edu	37	1	181767591	181767591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:181767591G>A	uc001gow.2	+	47	6599	c.6434G>A	c.(6433-6435)GGA>GAA	p.G2145E	CACNA1E_uc009wxs.2_Missense_Mutation_p.G2033E|CACNA1E_uc009wxt.2_Missense_Mutation_p.G1414E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2188	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCTGCTGATGGAAGCGAGGAG	0.637													32	57					0	0	0.010818	0	0
RNASEL	6041	broad.mit.edu	37	1	182550420	182550420	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:182550420G>A	uc001gpj.1	-	4	2012	c.1845C>T	c.(1843-1845)CTC>CTT	p.L615L	RNASEL_uc009wxz.1_Silent_p.L615L|RNASEL_uc001gpk.2_Silent_p.L615L	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	615	KEN.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						GCAGTAGTCTGAGGATCTCAC	0.423									Hereditary_Prostate_Cancer				57	96					0	0	0.014410	0	0
RNASEL	6041	broad.mit.edu	37	1	182555078	182555078	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:182555078G>A	uc001gpj.1	-	1	1031	c.864C>T	c.(862-864)ATC>ATT	p.I288I	RNASEL_uc009wxz.1_Silent_p.I288I|RNASEL_uc001gpk.2_Silent_p.I288I|RNASEL_uc009wya.1_Silent_p.I288I	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	288	ANK 8.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						GCAACTCGGCGATTTTCTTCA	0.473									Hereditary_Prostate_Cancer				52	84					0	0	0.014410	0	0
DHX9	1660	broad.mit.edu	37	1	182853892	182853892	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:182853892C>T	uc001gpr.2	+	27	3568	c.3405C>T	c.(3403-3405)ATC>ATT	p.I1135I	DHX9_uc001gps.2_Silent_p.I921I|DHX9_uc001gpt.2_Silent_p.I414I|DHX9_uc009wyd.2_Silent_p.I100I	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	1135					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						TGAACATGATCCGTCAGATCT	0.483													24	60					0	0	0.006320	0	0
NCF2	4688	broad.mit.edu	37	1	183529378	183529378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:183529378C>T	uc001gqj.3	-	14	1596	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K	NCF2_uc010pod.1_Missense_Mutation_p.E396K|NCF2_uc010poe.1_Missense_Mutation_p.E360K|NCF2_uc001gqk.3_Missense_Mutation_p.E441K	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	441					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						TTTTCACTTTCCTTGGGTTCA	0.438													50	107					0	0	0.014410	0	0
HMCN1	83872	broad.mit.edu	37	1	185964216	185964216	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:185964216C>T	uc001grq.1	+	24	4004	c.3775C>T	c.(3775-3777)CAA>TAA	p.Q1259*		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1259					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GCTACATGTCCAAGGTGATTC	0.408													20	42					0	0	0.012319	0	0
HMCN1	83872	broad.mit.edu	37	1	186047260	186047260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:186047260C>T	uc001grq.1	+	55	8736	c.8507C>T	c.(8506-8508)CCT>CTT	p.P2836L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2836	Ig-like C2-type 26.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TTGCAGATTCCTCGGGCTAAA	0.428													12	27					0	0	0.002450	0	0
PRG4	10216	broad.mit.edu	37	1	186276693	186276693	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:186276693G>A	uc001gru.3	+	7	1893	c.1842G>A	c.(1840-1842)AAG>AAA	p.K614K	PRG4_uc001grt.3_Silent_p.K573K|PRG4_uc009wyl.2_Silent_p.K521K|PRG4_uc009wym.2_Silent_p.K480K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	614	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|35; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTACCCCCAAGGAGACTGCAC	0.662													6	11					0	0	0.006214	0	0
TPR	7175	broad.mit.edu	37	1	186303579	186303579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:186303579G>A	uc001grv.2	-	36	5357	c.5060C>T	c.(5059-5061)GCT>GTT	p.A1687V		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1687					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CTTATTTCCAGCCATAGCTGC	0.488			T	NTRK1	papillary thyroid								45	75					0	0	0.011902	0	0
RGS18	64407	broad.mit.edu	37	1	192153614	192153614	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:192153614G>T	uc001gsg.2	+	5	814	c.638G>T	c.(637-639)AGG>ATG	p.R213M		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	213					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						ACAAATCTTAGGAGACGATCA	0.363													32	35					6.04164e-23	6.70063e-23	0.010818	1	0
CFH	3075	broad.mit.edu	37	1	196654220	196654220	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:196654220C>A	uc001gtj.3	+	7	1057	c.817C>A	c.(817-819)CCA>ACA	p.P273T	CFH_uc001gti.3_Missense_Mutation_p.P273T|CFH_uc009wyw.2_Missense_Mutation_p.P273T|CFH_uc009wyx.2_Missense_Mutation_p.P209T	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	273	Sushi 5.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TCCTTATATTCCAAATGGTGA	0.313													15	93					6.31663e-08	6.93236e-08	0.003163	1	0
CFH	3075	broad.mit.edu	37	1	196695903	196695904	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:196695903_196695904CC>TT	uc001gtj.3	+	14	2309_2310	c.2069_2070CC>TT	c.(2068-2070)ACC>ATT	p.T690I		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	690	Sushi 12.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GAGGAGAGTACCTGTGGAGATA	0.337													19	39					0	0	0.004672	0	0
CFHR3	10878	broad.mit.edu	37	1	196748941	196748941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:196748941C>T	uc001gtl.2	+	3	355	c.268C>T	c.(268-270)CCT>TCT	p.P90S	CFHR3_uc001gtk.2_Missense_Mutation_p.P90S|CFHR3_uc010poy.1_Missense_Mutation_p.P90S|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	90	Sushi 2.					extracellular space					0						ATGTTATTTTCCTTATTTGGA	0.299													9	3					0	0	0.004482	0	0
CFHR2	3080	broad.mit.edu	37	1	196918592	196918592	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:196918592C>T	uc001gtq.1	+	2	143	c.66C>T	c.(64-66)TTC>TTT	p.F22F	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	22	Sushi 1.					extracellular region				skin(2)|ovary(1)	3						CAGCAATGTTCTGTGATTTTC	0.289													14	17					0	0	0.002450	0	0
ASPM	259266	broad.mit.edu	37	1	197072889	197072889	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:197072889A>T	uc001gtu.2	-	18	5749	c.5492T>A	c.(5491-5493)ATT>AAT	p.I1831N	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1831	IQ 9.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						AGCAGACTGAATTTTAAGAGC	0.363													33	77					0	0	0.003271	0	0
ASPM	259266	broad.mit.edu	37	1	197098368	197098368	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:197098368G>A	uc001gtu.2	-	9	2966	c.2709C>T	c.(2707-2709)TCC>TCT	p.S903S	ASPM_uc001gtv.2_Silent_p.S903S|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	903					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CAATGAGTCTGGAAATTTTAG	0.308													30	26					0	0	0.008361	0	0
ASPM	259266	broad.mit.edu	37	1	197104367	197104367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:197104367G>A	uc001gtu.2	-	5	2289	c.2032C>T	c.(2032-2034)CCC>TCC	p.P678S	ASPM_uc001gtv.2_Missense_Mutation_p.P678S|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	678					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GGGTGTCTGGGAATATCTAAG	0.333													14	37					0	0	0.003163	0	0
ZBTB41	360023	broad.mit.edu	37	1	197128967	197128967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:197128967G>A	uc001gtx.1	-	10	2321	c.2252C>T	c.(2251-2253)TCT>TTT	p.S751F	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	751					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						ATCATCAGGAGATTTTATTTC	0.378													41	99					0	0	0.009718	0	0
NR5A2	2494	broad.mit.edu	37	1	200017832	200017832	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:200017832C>T	uc001gvb.2	+	5	1202	c.996C>T	c.(994-996)AAC>AAT	p.N332N	NR5A2_uc001gvc.2_Silent_p.N286N|NR5A2_uc009wzh.2_Silent_p.N292N|NR5A2_uc010pph.1_Silent_p.N260N	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	332					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AGCAGGCTAACCGAAGCAAGC	0.478													46	62					0	0	0.011902	0	0
KIF21B	23046	broad.mit.edu	37	1	200969865	200969865	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:200969865G>A	uc001gvs.1	-	10	1763	c.1446C>T	c.(1444-1446)ATC>ATT	p.I482I	KIF21B_uc001gvr.1_Silent_p.I482I|KIF21B_uc009wzl.1_Silent_p.I482I|KIF21B_uc010ppn.1_Silent_p.I482I	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	482	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CGATCTCCCGGATGTAGTTCT	0.602													23	44					0	0	0.002780	0	0
CACNA1S	779	broad.mit.edu	37	1	201028418	201028418	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:201028418G>A	uc001gvv.2	-	27	3651	c.3424C>T	c.(3424-3426)CAG>TAG	p.Q1142*		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1142	IV.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGCTCCGACTGGTTGTAGTGC	0.572													17	35					0	0	0.004990	0	0
CACNA1S	779	broad.mit.edu	37	1	201029892	201029892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:201029892G>A	uc001gvv.2	-	26	3535	c.3308C>T	c.(3307-3309)CCC>CTC	p.P1103L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1103	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGGTTTTTGGGAATGTAGCA	0.537													105	170					0	0	0.014410	0	0
IGFN1	91156	broad.mit.edu	37	1	201195228	201195228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:201195228C>T	uc001gwc.2	+	11	3015	c.2243C>T	c.(2242-2244)CCC>CTC	p.P748L	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						ACCAGCCAGCCCTGGTGCATC	0.662													10	18					0	0	0.001855	0	0
NAV1	89796	broad.mit.edu	37	1	201777203	201777203	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:201777203G>A	uc001gwu.2	+	17	4109	c.3762G>A	c.(3760-3762)CAG>CAA	p.Q1254Q	NAV1_uc001gwx.2_Silent_p.Q863Q|MIR1231_hsa-mir-1231|MI0006321_5'Flank	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1257					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						CCAAACTACAGCATGGTTCTA	0.537													30	74					0	0	0.010818	0	0
IPO9	55705	broad.mit.edu	37	1	201838745	201838745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:201838745G>A	uc001gwz.2	+	17	2082	c.2032G>A	c.(2032-2034)GTA>ATA	p.V678I		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	678					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						GACAACAGTAGTACGAAATAC	0.483													33	62					0	0	0.004878	0	0
LMOD1	25802	broad.mit.edu	37	1	201869571	201869571	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:201869571C>T	uc001gxb.2	-	2	818	c.570G>A	c.(568-570)GAG>GAA	p.E190E	LMOD1_uc010ppu.1_Silent_p.E139E	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	190	2.|8 X approximate tandem repeats.				muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						tccctttcttctcctcttcct	0.109													4	10					0	0	0.009096	0	0
ADORA1	134	broad.mit.edu	37	1	203134560	203134560	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:203134560C>T	uc001gze.1	+	4	946	c.513C>T	c.(511-513)TTC>TTT	p.F171F	FMOD_uc010pqi.1_Intron|ADORA1_uc001gzf.1_Silent_p.F171F|ADORA1_uc010pqg.1_Silent_p.F103F|ADORA1_uc009xak.1_Nonsense_Mutation_p.R97*|ADORA1_uc010pqh.1_Silent_p.F204F	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	171	Extracellular (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	AGTGCGAGTTCGAGAAGGTCA	0.572													20	24					0	0	0.008871	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203800888	203800888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:203800888C>T	uc001hac.2	+	11	1416	c.800C>T	c.(799-801)TCC>TTC	p.S267F	ZC3H11A_uc001had.2_Missense_Mutation_p.S267F|ZC3H11A_uc001hae.2_Missense_Mutation_p.S267F|ZC3H11A_uc001haf.2_Missense_Mutation_p.S267F|ZC3H11A_uc010pqm.1_Missense_Mutation_p.S213F|ZC3H11A_uc001hag.1_Missense_Mutation_p.S267F	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	267							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GTAACTCTCTCCACCAAACAA	0.428													11	28					0	0	0.008291	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204236603	204236603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:204236603C>T	uc001hau.2	-	5	597	c.280G>A	c.(280-282)GAT>AAT	p.D94N		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	94	PH.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			CCAAGCTCACCTTTATAGTAG	0.577													21	40					0	0	0.012319	0	0
PPP1R15B	84919	broad.mit.edu	37	1	204379328	204379328	+	Silent	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:204379328A>T	uc001hav.3	-	1	1617	c.1212T>A	c.(1210-1212)GTT>GTA	p.V404V		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	404					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			ATGAGTAATCAACTACACTTA	0.468													24	41					0	0	0.004656	0	0
NFASC	23114	broad.mit.edu	37	1	204966398	204966398	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:204966398C>T	uc001hbj.2	+	25	3211	c.2883C>T	c.(2881-2883)CCC>CCT	p.P961P	NFASC_uc010pra.1_Intron|NFASC_uc001hbi.2_Intron|NFASC_uc010prb.1_Intron|NFASC_uc010prc.1_Intron|NFASC_uc001hbl.1_Intron|NFASC_uc001hbm.1_Intron|NFASC_uc001hbn.1_Silent_p.P107P|NFASC_uc009xbh.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1026	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CAACAGTCCCCATCATCCCAA	0.413													6	12					0	0	0.001168	0	0
MIR135B	442891	broad.mit.edu	37	1	205417440	205417440	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:205417440C>T	hsa-mir-135b|MI0000810	-			c.87C>T			uc010prh.1_RNA																	0						GGAGCTCGCCCCTCACTGTAG	0.602													48	84					0	0	0.014410	0	0
CDK18	5129	broad.mit.edu	37	1	205496927	205496927	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:205496927C>T	uc001hcr.2	+	9	1044	c.825C>T	c.(823-825)TTC>TTT	p.F275F	CDK18_uc001hcp.2_Silent_p.F245F|CDK18_uc001hcq.2_Silent_p.F245F|CDK18_uc010prj.1_Silent_p.F156F|CDK18_uc001hcs.2_Silent_p.F156F|CDK18_uc009xbm.1_Silent_p.F170F|CDK18_uc001hct.2_5'Flank	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	243	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						CCCAGATTTTCATGTTCCAGC	0.637													23	44					0	0	0.012319	0	0
MFSD4	148808	broad.mit.edu	37	1	205548947	205548947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:205548947C>T	uc001hcv.3	+	2	385	c.299C>T	c.(298-300)CCC>CTC	p.P100L	MFSD4_uc010prk.1_Missense_Mutation_p.P100L|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Missense_Mutation_p.P45L	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	100	Helical; (Potential).				transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GCCGTCATCCCCTTCTGCCGC	0.632													40	68					0	0	0.010771	0	0
SLC45A3	85414	broad.mit.edu	37	1	205628574	205628574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:205628574G>A	uc001hda.1	-	5	1789	c.1450C>T	c.(1450-1452)CCG>TCG	p.P484S	SLC45A3_uc010prn.1_Intron|SLC45A3_uc010pro.1_Intron|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	484					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			CCCCGGCCCGGAACCACCCTG	0.667			T	ETV1|ETV5|ELK4|ERG	prostate 						OREG0014161	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	29					0	0	0.006214	0	0
SLC26A9	115019	broad.mit.edu	37	1	205890864	205890864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:205890864G>A	uc001hdq.2	-	17	1999	c.1885C>T	c.(1885-1887)CCT>TCT	p.P629S	SLC26A9_uc001hdo.2_Missense_Mutation_p.P297S|SLC26A9_uc001hdp.2_Missense_Mutation_p.P629S	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	629	STAS.					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GAGCTGTCAGGGCTGAAGGTG	0.647													6	6					0	0	0.001168	0	0
AVPR1B	553	broad.mit.edu	37	1	206224674	206224674	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:206224674G>A	uc001hds.2	+	1	392	c.234G>A	c.(232-234)CTG>CTA	p.L78L		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	78	Helical; Name=2; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	ACTTAGCCCTGACAGACCTGG	0.677													10	42					0	0	0.006214	0	0
MAPKAPK2	9261	broad.mit.edu	37	1	206902411	206902411	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:206902411C>T	uc001hem.1	+	3	737	c.451C>T	c.(451-453)CAG>TAG	p.Q151*	MAPKAPK2_uc001hel.1_Nonsense_Mutation_p.Q151*	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	151	Protein kinase.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			TAGCCGAATCCAGGATCGAGG	0.567													12	30					0	0	0.003163	0	0
C1orf116	79098	broad.mit.edu	37	1	207196511	207196511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:207196511G>A	uc001hfd.2	-	4	857	c.598C>T	c.(598-600)CCG>TCG	p.P200S	C1orf116_uc009xcb.1_5'UTR	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	200						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					GCTTCTGGCGGAGGGATGAGC	0.657													57	101					0	0	0.014410	0	0
CR1L	1379	broad.mit.edu	37	1	207874891	207874891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:207874891C>T	uc001hga.3	+	9	1377	c.1256C>T	c.(1255-1257)CCA>CTA	p.P419L	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	419	Sushi 7.					cytoplasm|extracellular region|membrane					0						CCTCCAGTTCCAGTGAATGGC	0.443													28	53					0	0	0.013726	0	0
PLXNA2	5362	broad.mit.edu	37	1	208216535	208216535	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:208216535G>A	uc001hgz.2	-	21	4646	c.3888C>T	c.(3886-3888)CTC>CTT	p.L1296L		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1296	Potential.|Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TATCCGTCTGGAGCTCAGCAA	0.552													25	38					0	0	0.009535	0	0
PLXNA2	5362	broad.mit.edu	37	1	208390341	208390341	+	Silent	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:208390341G>C	uc001hgz.2	-	2	1685	c.927C>G	c.(925-927)CTC>CTG	p.L309L	PLXNA2_uc001hha.3_Silent_p.L363L	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	309	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CAGCCTGCAGGAGGCGGTATT	0.612													17	38					0	0	0.007413	0	0
CAMK1G	57172	broad.mit.edu	37	1	209782328	209782328	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:209782328C>T	uc001hhd.2	+	8	741	c.639C>T	c.(637-639)CTC>CTT	p.L213L	CAMK1G_uc001hhf.3_Silent_p.L213L|CAMK1G_uc001hhe.2_Silent_p.L213L	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	213	Protein kinase.					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		GCTGCAGGCTCTGTGGATACC	0.512													26	55					0	0	0.005443	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209936196	209936196	+	Missense_Mutation	SNP	G	A	A	rs150703631	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:209936196G>A	uc001hho.2	+	5	822	c.532G>A	c.(532-534)GAT>AAT	p.D178N	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.D158N|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.D178N|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.D158N|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.D178N	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	178	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		AATTAAGAACGATGCCAGTCA	0.468													53	72					0	0	0.014410	0	0
HHAT	55733	broad.mit.edu	37	1	210761357	210761357	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:210761357T>C	uc009xcx.2	+	10	1325	c.1159T>C	c.(1159-1161)TGC>CGC	p.C387R	HHAT_uc010psq.1_Missense_Mutation_p.C250R|HHAT_uc001hhz.3_Missense_Mutation_p.C387R|HHAT_uc010psr.1_Missense_Mutation_p.C388R|HHAT_uc010pss.1_Missense_Mutation_p.C342R|HHAT_uc009xcy.2_Missense_Mutation_p.C322R|HHAT_uc010pst.1_Missense_Mutation_p.C324R|HHAT_uc010psu.1_Missense_Mutation_p.C322R|HHAT_uc001hia.3_Missense_Mutation_p.C77R	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	387					multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		CTACCTCTGGTGCTGGGCAGC	0.602													23	23					0	0	0.012319	0	0
KCNH1	3756	broad.mit.edu	37	1	211192252	211192252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:211192252G>A	uc001hib.2	-	6	1075	c.905C>T	c.(904-906)TCC>TTC	p.S302F	KCNH1_uc001hic.2_Missense_Mutation_p.S302F	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	302	Helical; Name=Segment S3; (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TGGCAAACAGGACAGAAGGTC	0.458													52	88					0	0	0.014410	0	0
TMEM206	55248	broad.mit.edu	37	1	212538573	212538573	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:212538573G>T	uc001hjc.3	-	8	1205	c.1037C>A	c.(1036-1038)ACG>AAG	p.T346K	TMEM206_uc010pte.1_Missense_Mutation_p.T407K	NM_018252	NP_060722	Q9H813	TM206_HUMAN	transmembrane protein 206	346	Cytoplasmic (Potential).					integral to membrane				breast(1)	1				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		TATGTGGCTCGTTGCCTGACC	0.413													47	66					1.32667e-27	1.47275e-27	0.014410	1	0
KCNK2	3776	broad.mit.edu	37	1	215408400	215408400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:215408400C>T	uc001hkq.2	+	7	1362	c.1193C>T	c.(1192-1194)CCC>CTC	p.P398L	KCNK2_uc001hko.2_Missense_Mutation_p.P394L|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.P383L	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	398	Cytoplasmic (Potential).|Essential for chloroform and halothane sensitivity (By similarity).|Required for basal channel activity (By similarity).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	GTCTTGCCTCCCTTACTGAAG	0.498													19	46					0	0	0.007413	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220383832	220383832	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:220383832C>T	uc010puk.1	-	7	675	c.511_splice	c.e7-1	p.N171_splice	RAB3GAP2_uc001hmf.2_Splice_Site|RAB3GAP2_uc001hmg.2_5'UTR|RAB3GAP2_uc010pum.1_Intron	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic						intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		GCACACCATTCTAGGAGGAAG	0.473													45	68					0	0	0.010771	0	0
TLR5	7100	broad.mit.edu	37	1	223284687	223284687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:223284687G>A	uc001hnv.1	-	4	2133	c.1687C>T	c.(1687-1689)CCT>TCT	p.P563S	TLR5_uc001hnw.1_Missense_Mutation_p.P563S	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	563	Extracellular (Potential).|LRR 15.		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TCAGGATTAGGAGCTAGGAGC	0.388													23	39					0	0	0.002780	0	0
OBSCN	84033	broad.mit.edu	37	1	228433369	228433370	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:228433369_228433370CC>AT	uc009xez.1	+	12	3781_3782	c.3737_3738CC>AT	c.(3736-3738)TCC>TAT	p.S1246Y	OBSCN_uc001hsn.2_Missense_Mutation_p.S1246Y	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1246	Ig-like 12.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGAGAGTCTCCTTTCAACTGC	0.54													22	79					0	0	0.004672	0	0
OBSCN	84033	broad.mit.edu	37	1	228466963	228466964	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:228466963_228466964CC>GT	uc009xez.1	+	27	7258_7259	c.7214_7215CC>GT	c.(7213-7215)CCC>CGT	p.P2405R	OBSCN_uc001hsn.2_Missense_Mutation_p.P2405R|OBSCN_uc001hsp.1_Missense_Mutation_p.P104R|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2405					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACCTCCATCCCCTCAGTGCGGC	0.639													37	58					0	0	0.004672	0	0
OBSCN	84033	broad.mit.edu	37	1	228559474	228559474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:228559474G>A	uc009xez.1	+	94	21039	c.20995G>A	c.(20995-20997)GGG>AGG	p.G6999R	OBSCN_uc001hsr.1_Missense_Mutation_p.G1628R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6999	Pro-rich.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGGGACATGGGGCACCCTCA	0.701													22	29					0	0	0.004656	0	0
TRIM11	81559	broad.mit.edu	37	1	228582615	228582615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:228582615G>A	uc001hss.2	-	6	1453	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	TRIM11_uc010pvx.1_Missense_Mutation_p.P399S	NM_145214	NP_660215	Q96F44	TRI11_HUMAN	tripartite motif-containing 11	400	B30.2/SPRY.				response to virus	cytoplasm|nucleus	protein binding|zinc ion binding			lung(3)|ovary(1)	4		Prostate(94;0.0724)				CGCCTGGGTGGGTCCCGGAGT	0.597													24	47					0	0	0.003954	0	0
LYST	1130	broad.mit.edu	37	1	235891379	235891379	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:235891379A>G	uc001hxj.2	-	38	9334	c.9159T>C	c.(9157-9159)AGT>AGC	p.S3053S	LYST_uc001hxi.2_Silent_p.S277S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3053					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TACTCACCGAACTTTCAACTG	0.328									Chediak-Higashi_syndrome				23	47					0	0	0.004656	0	0
MTR	4548	broad.mit.edu	37	1	236973878	236973878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:236973878C>T	uc001hyi.3	+	5	908	c.485C>T	c.(484-486)CCG>CTG	p.P162L	MTR_uc010pxv.1_RNA|MTR_uc010pxw.1_5'UTR|MTR_uc010pxx.1_Missense_Mutation_p.P162L|MTR_uc010pxy.1_Missense_Mutation_p.P162L|MTR_uc009xgj.1_5'UTR	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	162	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	GTGGAAAGGCCGGATTATAGG	0.289													43	101					0	0	0.009718	0	0
RYR2	6262	broad.mit.edu	37	1	237881821	237881821	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:237881821G>A	uc001hyl.1	+	73	10674	c.10554G>A	c.(10552-10554)AAG>AAA	p.K3518K	RYR2_uc010pxz.1_Silent_p.K473K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3518					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TACAAGGCAAGGTAAGCCAAA	0.294													18	30					0	0	0.008871	0	0
FMN2	56776	broad.mit.edu	37	1	240370838	240370838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:240370838C>T	uc010pyd.1	+	5	2951	c.2726C>T	c.(2725-2727)CCA>CTA	p.P909L	FMN2_uc010pye.1_Missense_Mutation_p.P913L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	909	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GAAATGCTGCCACCCCCTCCC	0.657													18	40					0	0	0.008871	0	0
RGS7	6000	broad.mit.edu	37	1	241099944	241099944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:241099944G>A	uc001hyv.2	-	5	619	c.289C>T	c.(289-291)CAT>TAT	p.H97Y	RGS7_uc010pyh.1_Missense_Mutation_p.H71Y|RGS7_uc010pyj.1_Missense_Mutation_p.H13Y|RGS7_uc001hyu.2_Missense_Mutation_p.H97Y|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Missense_Mutation_p.H97Y	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	97	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GTGAGGACATGATCTGAGATT	0.398													63	102					0	0	0.014410	0	0
KMO	8564	broad.mit.edu	37	1	241714312	241714312	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:241714312A>C	uc009xgp.2	+	4	345	c.280A>C	c.(280-282)AAG>CAG	p.K94Q	KMO_uc001hyy.2_Missense_Mutation_p.K94Q|KMO_uc009xgo.1_Missense_Mutation_p.K94Q	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	94					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			TTCAGGAAAAAAGTCTGCAAT	0.403													78	116					0	0	0.014410	0	0
ZNF238	10472	broad.mit.edu	37	1	244218220	244218220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:244218220C>T	uc001iae.2	+	1	1639	c.1117C>T	c.(1117-1119)CCC>TCC	p.P373S	ZNF238_uc001iad.3_Missense_Mutation_p.P382S|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	373	Interaction with DNMT3A.|C2H2-type 1.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			CTTCATGTGCCCCCTGTGCAA	0.657													12	25					0	0	0.013537	0	0
KIF26B	55083	broad.mit.edu	37	1	245530178	245530178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:245530178C>T	uc001ibf.1	+	3	948	c.508C>T	c.(508-510)CCC>TCC	p.P170S	KIF26B_uc010pyq.1_Missense_Mutation_p.P170S|KIF26B_uc010pyr.1_5'UTR	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	170					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			ACTCCAGGTCCCCAACACCAT	0.547													9	20					0	0	0.006214	0	0
KIF26B	55083	broad.mit.edu	37	1	245852056	245852056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:245852056C>T	uc001ibf.1	+	12	6211	c.5771C>T	c.(5770-5772)TCC>TTC	p.S1924F	KIF26B_uc001ibg.1_Missense_Mutation_p.S1542F|KIF26B_uc001ibh.1_Missense_Mutation_p.S1166F	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1924					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AACAGCAGCTCCGTGGGCGGC	0.716													6	20					0	0	0.001984	0	0
CNST	163882	broad.mit.edu	37	1	246811001	246811001	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:246811001C>T	uc001ibp.2	+	9	1876	c.1498C>T	c.(1498-1500)CAG>TAG	p.Q500*	CNST_uc001ibo.3_Nonsense_Mutation_p.Q500*	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	500					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						ACCACAGGCGCAGGCTGACTC	0.473													33	50					0	0	0.010818	0	0
OR2G3	81469	broad.mit.edu	37	1	247769031	247769031	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:247769031C>T	uc010pyz.1	+	1	144	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TAATCATCATCTCATATCTGG	0.463													83	153					0	0	0.014410	0	0
OR11L1	391189	broad.mit.edu	37	1	248004409	248004409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248004409G>A	uc001idn.1	-	1	790	c.790C>T	c.(790-792)CCC>TCC	p.P264S		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AACAGGTGGGGACTGGGACAC	0.498													25	48					0	0	0.003954	0	0
OR2T8	343172	broad.mit.edu	37	1	248084415	248084415	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248084415C>T	uc010pzc.1	+	1	96	c.96C>T	c.(94-96)ATC>ATT	p.I32I		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TTCTGAGTATCGTTTTGACCT	0.483													24	55					0	0	0.004656	0	0
OR2M3	127062	broad.mit.edu	37	1	248366378	248366378	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248366378G>A	uc010pzg.1	+	1	9	c.9G>A	c.(7-9)AGG>AGA	p.R3R		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCATGGCAAGGGAGAATTCGA	0.433													70	129					0	0	0.014410	0	0
OR2T33	391195	broad.mit.edu	37	1	248436773	248436773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248436773G>A	uc010pzi.1	-	1	344	c.344C>T	c.(343-345)GCC>GTC	p.A115V		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATAGGCCATGGCTGCTAAGAG	0.587													4	95					0	0	0.010504	0	0
OR2M7	391196	broad.mit.edu	37	1	248487377	248487377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248487377G>A	uc010pzk.1	-	1	494	c.494C>T	c.(493-495)TCC>TTC	p.S165F		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTAGGAGAAGGAAAATGTCGC	0.453													85	143					0	0	0.014410	0	0
OR2M7	391196	broad.mit.edu	37	1	248487663	248487663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248487663C>T	uc010pzk.1	-	1	208	c.208G>A	c.(208-210)GAC>AAC	p.D70N		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGCATGAGGTCCATGAGGGAC	0.512													98	167					0	0	0.014410	0	0
OR2T4	127074	broad.mit.edu	37	1	248524930	248524930	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248524930C>T	uc001ieh.1	+	1	48	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGTCGGATTTCATCCTGATGG	0.493													20	45					0	0	0.002780	0	0
OR2T2	401992	broad.mit.edu	37	1	248616348	248616348	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248616348C>T	uc001iek.1	+	1	250	c.250C>T	c.(250-252)CAG>TAG	p.Q84*		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CAAGATGCTCCAGGACCTCCT	0.537													40	194					0	0	0.014410	0	0
OR2T3	343173	broad.mit.edu	37	1	248637457	248637457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248637457C>T	uc001iel.1	+	1	806	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCCCGAGTTCCTACCACACA	0.552													76	285					0	0	0.014410	0	0
OR2G6	391211	broad.mit.edu	37	1	248685589	248685589	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:248685589C>G	uc001ien.1	+	1	642	c.642C>G	c.(640-642)ATC>ATG	p.I214M		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGTTACTCATCTTAGTCTCCT	0.493													13	98					0	0	0.002450	0	0
SH3BP5L	80851	broad.mit.edu	37	1	249106304	249106304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr1:249106304G>A	uc001iew.1	-	7	1529	c.977C>T	c.(976-978)CCC>CTC	p.P326L	SH3BP5L_uc010pzp.1_Missense_Mutation_p.P219L|SH3BP5L_uc010pzq.1_Missense_Mutation_p.P294L|SH3BP5L_uc001iev.1_Missense_Mutation_p.P207L	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	326											0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			GTCGGGGGCGGGGCCGGGCCC	0.711													23	35					0	0	0.004656	0	0
AKR1C3	8644	broad.mit.edu	37	10	5144305	5144305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:5144305C>T	uc001ihr.2	+	6	766	c.583C>T	c.(583-585)CCG>TCG	p.P195S	AKR1C3_uc010qap.1_Missense_Mutation_p.P172S|AKR1C3_uc001ihu.2_Missense_Mutation_p.P195S	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	195					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	AGAATGTCATCCGTATTTCAA	0.358													18	38					0	0	0.010504	0	0
PRKCQ	5588	broad.mit.edu	37	10	6472779	6472779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:6472779G>A	uc001ijj.1	-	17	2033	c.1958C>T	c.(1957-1959)CCG>CTG	p.P653L	PRKCQ_uc009xim.1_Missense_Mutation_p.P590L|PRKCQ_uc001iji.1_Missense_Mutation_p.P686L|PRKCQ_uc009xin.1_Missense_Mutation_p.P617L|PRKCQ_uc010qax.1_Missense_Mutation_p.P528L	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	653	AGC-kinase C-terminal.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TACCACTTTCGGCCGGAACGG	0.617													36	46					0	0	0.005524	0	0
PRKCQ	5588	broad.mit.edu	37	10	6521089	6521089	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:6521089G>A	uc001ijj.1	-	12	1293	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	PRKCQ_uc009xim.1_Silent_p.F406F|PRKCQ_uc001iji.1_Silent_p.F439F|PRKCQ_uc009xin.1_Silent_p.F370F|PRKCQ_uc010qax.1_Silent_p.F281F	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	406	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity	p.F406F(1)		ovary(3)|lung(2)|large_intestine(1)	6						CCTTTATTGCGAAAAATTGAT	0.398													17	33					0	0	0.014323	0	0
TAF3	83860	broad.mit.edu	37	10	7866325	7866325	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:7866325C>T	uc010qbd.1	+	2	211	c.211C>T	c.(211-213)CAG>TAG	p.Q71*		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	71					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						TGAAGCTTTCCAGCTGATGGG	0.393													22	77					0	0	0.003330	0	0
SEC61A2	55176	broad.mit.edu	37	10	12191670	12191670	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:12191670C>T	uc001ile.2	+	5	444	c.297C>T	c.(295-297)ATC>ATT	p.I99I	SEC61A2_uc010qbq.1_Silent_p.I77I|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Silent_p.I99I	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	99	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				GAGCCAAAATCATTGAAGTTG	0.403													80	308					0	0	0.014410	0	0
MCM10	55388	broad.mit.edu	37	10	13214476	13214476	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:13214476C>T	uc001ima.2	+	4	551	c.450C>T	c.(448-450)TCC>TCT	p.S150S	MCM10_uc001imb.2_Silent_p.S150S|MCM10_uc001imc.2_Silent_p.S150S	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	150					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TGCAAAAATCCCCTGGTAAGA	0.403													36	34					0	0	0.003271	0	0
SEPHS1	22929	broad.mit.edu	37	10	13380726	13380726	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:13380726G>A	uc001imk.2	-	3	635	c.276C>T	c.(274-276)ATC>ATT	p.I92I	SEPHS1_uc001imh.2_5'Flank|SEPHS1_uc010qbs.1_Silent_p.I44I|SEPHS1_uc001imi.2_Silent_p.I92I|SEPHS1_uc001imj.2_Silent_p.I92I|SEPHS1_uc010qbt.1_Silent_p.I25I|SEPHS1_uc009xje.2_Silent_p.I92I	NM_012247	NP_036379	P49903	SPS1_HUMAN	selenophosphate synthetase 1	92					protein modification process		ATP binding|GTP binding|selenide, water dikinase activity			skin(1)	1						GGTCGTCTACGATCGGGTAAA	0.463													23	92					0	0	0.002780	0	0
OLAH	55301	broad.mit.edu	37	10	15107690	15107690	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:15107690G>A	uc001inu.2	+	6	764	c.510G>A	c.(508-510)AAG>AAA	p.K170K	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Silent_p.K223K	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	170					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						CTGAAGCCAAGGAATTTGTGA	0.393													8	36					0	0	0.006214	0	0
ITGA8	8516	broad.mit.edu	37	10	15639292	15639292	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:15639292G>A	uc001ioc.1	-	21	2125	c.2125C>T	c.(2125-2127)CGA>TGA	p.R709*	ITGA8_uc010qcb.1_Nonsense_Mutation_p.R694*	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	709	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CTCAGTGGTCGAAATCCCTAC	0.502													12	66					0	0	0.010729	0	0
C1QL3	389941	broad.mit.edu	37	10	16562764	16562764	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:16562764G>A	uc001ioj.1	-	1	1241	c.301C>T	c.(301-303)CTG>TTG	p.L101L		NM_001010908	NP_001010908	Q5VWW1	C1QL3_HUMAN	complement component 1, q subcomponent-like 3	101	Pro-rich.|Collagen-like.					collagen				ovary(1)	1						gggcccggcAGGCCTTGGCGG	0.677													3	2					0	0	0.000602	0	0
CUBN	8029	broad.mit.edu	37	10	16877024	16877024	+	Missense_Mutation	SNP	C	T	T	rs145661638		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:16877024C>T	uc001ioo.2	-	64	10403	c.10351G>A	c.(10351-10353)GAT>AAT	p.D3451N		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3451	CUB 26.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCCAAGAAATCGTTTCTGCAT	0.388													5	21					0	0	0.000602	0	0
CUBN	8029	broad.mit.edu	37	10	16982177	16982177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:16982177C>T	uc001ioo.2	-	37	5454	c.5402G>A	c.(5401-5403)GGA>GAA	p.G1801E		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1801	CUB 12.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CGTGGCATTTCCTTCACGGAT	0.433													108	116					0	0	0.014410	0	0
VIM	7431	broad.mit.edu	37	10	17276783	17276783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:17276783C>T	uc001iou.2	+	6	1387	c.974C>T	c.(973-975)TCC>TTC	p.S325F	VIM_uc001iov.1_Missense_Mutation_p.S325F|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Missense_Mutation_p.S325F|VIM_uc001ioy.1_Missense_Mutation_p.S325F|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Intron|VIM_uc001ipc.1_Missense_Mutation_p.S325F	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	325	Rod.|Coil 2.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						CAGGTGCAGTCCCTCACCTGT	0.537													9	58					0	0	0.006214	0	0
STAM	8027	broad.mit.edu	37	10	17726680	17726680	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:17726680G>A	uc001ipj.1	+	3	348	c.132G>A	c.(130-132)AAG>AAA	p.K44K	STAM_uc010qcf.1_Intron	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	44	VHS.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						TTAGACCTAAGGATTGTCTTC	0.373													16	42					0	0	0.007413	0	0
CACNB2	783	broad.mit.edu	37	10	18828607	18828607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:18828607G>A	uc001ipr.2	+	14	1997	c.1937G>A	c.(1936-1938)CGG>CAG	p.R646Q	CACNB2_uc009xjz.1_Missense_Mutation_p.R396Q|CACNB2_uc001ips.2_Missense_Mutation_p.R622Q|CACNB2_uc001ipt.2_Missense_Mutation_p.R608Q|CACNB2_uc001ipu.2_Missense_Mutation_p.R618Q|CACNB2_uc001ipv.2_Missense_Mutation_p.R594Q|CACNB2_uc009xka.1_Missense_Mutation_p.R580Q|CACNB2_uc001ipw.2_Missense_Mutation_p.R553Q|CACNB2_uc001ipx.2_Missense_Mutation_p.R591Q|CACNB2_uc001ipz.2_Missense_Mutation_p.R568Q|CACNB2_uc001ipy.2_Missense_Mutation_p.R592Q|CACNB2_uc010qco.1_Missense_Mutation_p.R560Q|CACNB2_uc001iqa.2_Missense_Mutation_p.R598Q|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	646					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCAAAAAAACGGAATGAGGCT	0.428													40	48					0	0	0.011902	0	0
PLXDC2	84898	broad.mit.edu	37	10	20335861	20335861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:20335861G>A	uc001iqg.1	+	3	1025	c.388G>A	c.(388-390)GAT>AAT	p.D130N	PLXDC2_uc001iqh.1_Intron	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	130	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TGCCAGCCGGGATTTATGGGT	0.373													29	97					0	0	0.006320	0	0
PLXDC2	84898	broad.mit.edu	37	10	20506404	20506404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:20506404G>A	uc001iqg.1	+	11	1809	c.1172G>A	c.(1171-1173)CGA>CAA	p.R391Q	PLXDC2_uc001iqh.1_Missense_Mutation_p.R342Q|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	391	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						ACTTCTTCTCGAACCACCACA	0.443													15	33					0	0	0.003163	0	0
NEBL	10529	broad.mit.edu	37	10	21097555	21097555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:21097555C>T	uc001iqi.2	-	26	3042	c.2645G>A	c.(2644-2646)CGA>CAA	p.R882Q	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	882	Linker.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GGAATGGGATCGAGACCAGTG	0.423													43	91					0	0	0.014410	0	0
NEBL	10529	broad.mit.edu	37	10	21101729	21101729	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:21101729C>T	uc001iqi.2	-	24	2884	c.2487G>A	c.(2485-2487)GTG>GTA	p.V829V	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.V166V	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	829	Nebulin 23.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGTCCATCTCCACGATGTGAG	0.532													20	32					0	0	0.010504	0	0
NEBL	10529	broad.mit.edu	37	10	21185941	21185941	+	Silent	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:21185941A>C	uc001iqi.2	-	2	496	c.99T>G	c.(97-99)GTT>GTG	p.V33V	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	33	Nebulin 1.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AGTCTTCAATAACAGGCTTAT	0.363													67	104					0	0	0.014410	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762289	24762289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:24762289C>T	uc001iru.3	+	6	1382	c.979C>T	c.(979-981)CCG>TCG	p.P327S	KIAA1217_uc001irs.2_Missense_Mutation_p.P247S|KIAA1217_uc001irt.3_Missense_Mutation_p.P327S|KIAA1217_uc010qcy.1_Missense_Mutation_p.P327S|KIAA1217_uc010qcz.1_Missense_Mutation_p.P327S|KIAA1217_uc001irv.1_Missense_Mutation_p.P177S|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.P45S|KIAA1217_uc001irz.2_Missense_Mutation_p.P45S|KIAA1217_uc001irx.2_Missense_Mutation_p.P45S|KIAA1217_uc001iry.2_Missense_Mutation_p.P45S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	327	Pro-rich.				embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GCCCCCCTCCCCGTCCAGAAT	0.622													11	44					0	0	0.010729	0	0
MYO3A	53904	broad.mit.edu	37	10	26241046	26241046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:26241046C>T	uc001isn.2	+	3	367	c.7C>T	c.(7-9)CCA>TCA	p.P3S	MYO3A_uc009xko.1_Missense_Mutation_p.P3S|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.P3S|MYO3A_uc001ism.2_Missense_Mutation_p.P3S	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	3					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TGAGATGTTTCCATTAATTGG	0.353													17	21					0	0	0.007413	0	0
MYO3A	53904	broad.mit.edu	37	10	26455066	26455066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:26455066G>A	uc001isn.2	+	27	3430	c.3070G>A	c.(3070-3072)GAA>AAA	p.E1024K	MYO3A_uc009xko.1_Missense_Mutation_p.E1024K|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1024	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CACCATTTTGGAAAAAGCTGG	0.423													35	174					0	0	0.013726	0	0
MYO3A	53904	broad.mit.edu	37	10	26500877	26500877	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:26500877C>T	uc001isn.2	+	35	5196	c.4836C>T	c.(4834-4836)CTC>CTT	p.L1612L	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.R628C	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1612					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GCCGGCGCCTCGTCCAGCAGT	0.692													7	17					0	0	0.003080	0	0
YME1L1	10730	broad.mit.edu	37	10	27425278	27425278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:27425278G>A	uc001iti.2	-	6	820	c.638C>T	c.(637-639)TCA>TTA	p.S213L	YME1L1_uc001itj.2_Missense_Mutation_p.S156L|YME1L1_uc010qdl.1_Missense_Mutation_p.S123L|YME1L1_uc009xkv.2_RNA	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	213					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						TCGTGTCCTTGATTTCAAAGT	0.358													19	32					0	0	0.010504	0	0
MKX	283078	broad.mit.edu	37	10	28023641	28023641	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28023641C>T	uc001ity.3	-	5	807	c.582G>A	c.(580-582)GAG>GAA	p.E194E	MKX_uc001itx.3_Silent_p.E194E	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	194					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGACCGAATTCTCACTTTTAA	0.488													15	74					0	0	0.004990	0	0
MKX	283078	broad.mit.edu	37	10	28024185	28024185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28024185C>T	uc001ity.3	-	4	692	c.467G>A	c.(466-468)CGG>CAG	p.R156Q	MKX_uc001itx.3_Missense_Mutation_p.R156Q	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	156					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TACGCTAAGCCGTTCAGCATT	0.378													30	66					0	0	0.007291	0	0
ARMC4	55130	broad.mit.edu	37	10	28101521	28101521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28101521C>T	uc009xky.2	-	20	3153	c.3055G>A	c.(3055-3057)GAT>AAT	p.D1019N	ARMC4_uc010qds.1_Silent_p.R584R|ARMC4_uc010qdt.1_Missense_Mutation_p.D711N|ARMC4_uc001itz.2_Missense_Mutation_p.D1019N	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1019	ARM 10.						binding	p.D1019Y(1)		ovary(4)|skin(2)	6						TCCTGGAGATCCTGGTCAGGG	0.418													15	83					0	0	0.004990	0	0
ARMC4	55130	broad.mit.edu	37	10	28223958	28223958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28223958C>T	uc009xky.2	-	16	2574	c.2476G>A	c.(2476-2478)GTA>ATA	p.V826I	ARMC4_uc010qds.1_Missense_Mutation_p.V351I|ARMC4_uc010qdt.1_Missense_Mutation_p.V518I|ARMC4_uc001itz.2_Missense_Mutation_p.V826I	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	826							binding			ovary(4)|skin(2)	6						TCAGGTTCTACTGCACAAGCA	0.423													43	54					0	0	0.011902	0	0
ARMC4	55130	broad.mit.edu	37	10	28224106	28224106	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28224106C>T	uc009xky.2	-	16	2426	c.2328G>A	c.(2326-2328)GTG>GTA	p.V776V	ARMC4_uc010qds.1_Silent_p.V301V|ARMC4_uc010qdt.1_Silent_p.V468V|ARMC4_uc001itz.2_Silent_p.V776V	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	776	ARM 5.						binding			ovary(4)|skin(2)	6						AGGCCCCAACCACATTCACAA	0.453													36	49					0	0	0.004289	0	0
ARMC4	55130	broad.mit.edu	37	10	28224174	28224174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28224174C>T	uc009xky.2	-	16	2358	c.2260G>A	c.(2260-2262)GAA>AAA	p.E754K	ARMC4_uc010qds.1_Missense_Mutation_p.E279K|ARMC4_uc010qdt.1_Missense_Mutation_p.E446K|ARMC4_uc001itz.2_Missense_Mutation_p.E754K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	754	ARM 5.						binding			ovary(4)|skin(2)	6						GCTTTGTATTCCCGAAACCTA	0.348													13	54					0	0	0.004007	0	0
ARMC4	55130	broad.mit.edu	37	10	28233336	28233336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28233336C>T	uc009xky.2	-	12	1656	c.1558G>A	c.(1558-1560)GAA>AAA	p.E520K	ARMC4_uc010qds.1_Missense_Mutation_p.E45K|ARMC4_uc010qdt.1_Missense_Mutation_p.E212K|ARMC4_uc001itz.2_Missense_Mutation_p.E520K|ARMC4_uc010qdu.1_Missense_Mutation_p.E212K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	520	ARM 1.						binding			ovary(4)|skin(2)	6						TGACTGATTTCCTTCAGTATT	0.343													12	28					0	0	0.002450	0	0
ARMC4	55130	broad.mit.edu	37	10	28273212	28273212	+	Missense_Mutation	SNP	T	C	C	rs138425193	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28273212T>C	uc009xky.2	-	5	681	c.583A>G	c.(583-585)AGT>GGT	p.S195G	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.S195G|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	195							binding			ovary(4)|skin(2)	6						GGACTTAAACTTATTTCTCTG	0.328													28	74					0	0	0.008361	0	0
MPP7	143098	broad.mit.edu	37	10	28378648	28378648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28378648G>A	uc001iua.1	-	14	1479	c.1075C>T	c.(1075-1077)CCG>TCG	p.P359S	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.P359S|MPP7_uc009xla.2_Missense_Mutation_p.P359S|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	359					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CGCCGATACGGTGTCACTTCT	0.388													61	57					0	0	0.014410	0	0
MPP7	143098	broad.mit.edu	37	10	28409531	28409531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:28409531C>T	uc001iua.1	-	11	1086	c.682G>A	c.(682-684)GAA>AAA	p.E228K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E228K|MPP7_uc009xla.2_Missense_Mutation_p.E228K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	228	SH3.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						ACCTTGCCTTCTTTTGATGGT	0.388													13	19					0	0	0.002450	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315537	30315537	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:30315537C>T	uc001iux.2	-	2	3599	c.3540G>A	c.(3538-3540)GGG>GGA	p.G1180G	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.G1042G|KIAA1462_uc009xle.1_Silent_p.G1180G	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1180										ovary(4)	4						TGGTGACAACCCCGTCCACAT	0.582													44	137					0	0	0.014410	0	0
KIAA1462	57608	broad.mit.edu	37	10	30336690	30336690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:30336690C>T	uc001iux.2	-	1	111	c.52G>A	c.(52-54)GAC>AAC	p.D18N	KIAA1462_uc001iuy.2_Missense_Mutation_p.D18N|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Missense_Mutation_p.D18N	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	18										ovary(4)	4						GCTGGGGGGTCTCTTGACAGC	0.597													34	38					0	0	0.003271	0	0
MAP3K8	1326	broad.mit.edu	37	10	30747036	30747036	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:30747036C>T	uc001ivi.1	+	7	1593	c.897C>T	c.(895-897)ATC>ATT	p.I299I	MAP3K8_uc009xlf.1_Silent_p.I299I|MAP3K8_uc001ivj.1_Silent_p.I299I	NM_005204	NP_005195	P41279	M3K8_HUMAN	mitogen-activated protein kinase kinase kinase	299	Protein kinase.				cell cycle|T cell costimulation	cytosol	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			breast(3)|central_nervous_system(1)	4		Prostate(175;0.151)				CAGAGGTCATCCTGTGCAGGG	0.537													32	35					0	0	0.006230	0	0
Unknown	0	broad.mit.edu	37	10	31001568	31001568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:31001568C>T	uc010qdx.1	+	9	1552	c.1010C>T	c.(1009-1011)TCC>TTC	p.S337F						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		CAATATGTTTCCTAGCTGGGA	0.488													15	35					0	0	0.004007	0	0
ZEB1	6935	broad.mit.edu	37	10	31809938	31809938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:31809938C>T	uc001ivs.3	+	7	1738	c.1675C>T	c.(1675-1677)CCT>TCT	p.P559S	ZEB1_uc001ivr.3_Missense_Mutation_p.P341S|ZEB1_uc010qee.1_Missense_Mutation_p.P341S|ZEB1_uc010qef.1_Missense_Mutation_p.P341S|ZEB1_uc009xlj.1_Missense_Mutation_p.P485S|ZEB1_uc010qeg.1_Missense_Mutation_p.P418S|ZEB1_uc009xlk.1_Missense_Mutation_p.P341S|ZEB1_uc001ivt.3_Missense_Mutation_p.P341S|ZEB1_uc001ivu.3_Missense_Mutation_p.P560S|ZEB1_uc001ivv.3_Missense_Mutation_p.P539S|ZEB1_uc010qeh.1_Missense_Mutation_p.P492S|ZEB1_uc009xlo.1_Missense_Mutation_p.P542S|ZEB1_uc009xlp.2_Missense_Mutation_p.P543S	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	559					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TACTCAGCCTCCTCCACTCCC	0.463													13	44					0	0	0.013537	0	0
PARD3	56288	broad.mit.edu	37	10	34606123	34606123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:34606123C>T	uc010qej.1	-	20	2986	c.2986G>A	c.(2986-2988)GGA>AGA	p.G996R	PARD3_uc010qek.1_Missense_Mutation_p.G993R|PARD3_uc010qel.1_Missense_Mutation_p.G996R|PARD3_uc010qem.1_Missense_Mutation_p.G980R|PARD3_uc010qen.1_Missense_Mutation_p.G950R|PARD3_uc010qeo.1_Missense_Mutation_p.G950R|PARD3_uc010qep.1_Missense_Mutation_p.G906R|PARD3_uc010qeq.1_Missense_Mutation_p.G921R|PARD3_uc001ixo.1_Missense_Mutation_p.G709R|PARD3_uc001ixp.1_Missense_Mutation_p.G827R|PARD3_uc001ixq.1_Missense_Mutation_p.G950R|PARD3_uc001ixr.1_Missense_Mutation_p.G993R|PARD3_uc001ixt.1_Missense_Mutation_p.G814R|PARD3_uc001ixu.1_Missense_Mutation_p.G938R|PARD3_uc001ixs.1_Missense_Mutation_p.G619R	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	996	Lys-rich.			GKEKK -> VELHE (in Ref. 7; BAA91366).	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				ttttcttttccagttttatcc	0.244													10	33					0	0	0.006214	0	0
PARD3	56288	broad.mit.edu	37	10	34649112	34649112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:34649112C>T	uc010qej.1	-	13	1783	c.1783G>A	c.(1783-1785)GAT>AAT	p.D595N	PARD3_uc010qek.1_Missense_Mutation_p.D595N|PARD3_uc010qel.1_Missense_Mutation_p.D595N|PARD3_uc010qem.1_Missense_Mutation_p.D582N|PARD3_uc010qen.1_Missense_Mutation_p.D582N|PARD3_uc010qeo.1_Missense_Mutation_p.D582N|PARD3_uc010qep.1_Missense_Mutation_p.D538N|PARD3_uc010qeq.1_Missense_Mutation_p.D538N|PARD3_uc001ixo.1_Missense_Mutation_p.D312N|PARD3_uc001ixp.1_Missense_Mutation_p.D460N|PARD3_uc001ixq.1_Missense_Mutation_p.D582N|PARD3_uc001ixr.1_Missense_Mutation_p.D595N|PARD3_uc001ixt.1_Missense_Mutation_p.D416N|PARD3_uc001ixu.1_Missense_Mutation_p.D538N|PARD3_uc001ixs.1_Missense_Mutation_p.D248N	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	595	PDZ 3.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GATCCTGAATCATTAAGTGGG	0.428													19	57					0	0	0.008871	0	0
CUL2	8453	broad.mit.edu	37	10	35324198	35324198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:35324198G>A	uc001ixv.2	-	10	1114	c.904C>T	c.(904-906)CGT>TGT	p.R302C	CUL2_uc009xma.2_Missense_Mutation_p.R171C|CUL2_uc010qer.1_Missense_Mutation_p.R321C|CUL2_uc001ixw.2_Missense_Mutation_p.R302C|CUL2_uc010qes.1_Missense_Mutation_p.R239C	NM_003591	NP_003582	Q13617	CUL2_HUMAN	cullin 2	302					cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding			ovary(3)	3						GACACAGCACGGAGTAAGACG	0.428													8	18					0	0	0.006214	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37438607	37438607	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:37438607G>A	uc001iza.1	+	10	1503	c.1404G>A	c.(1402-1404)AAG>AAA	p.K468K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	524						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CTGCCTTCAAGGTATTTAGTT	0.303													24	33					0	0	0.003954	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37442579	37442579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:37442579G>A	uc001iza.1	+	13	1718	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	596						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAAATAAATGGAAAATTAGAA	0.323													13	179					0	0	0.013537	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508087	37508087	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:37508087C>T	uc001iza.1	+	34	3378	c.3279C>T	c.(3277-3279)ACC>ACT	p.T1093T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1149	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TTCAGATGACCCTAAAACTGA	0.348													34	124					0	0	0.007835	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508796	37508796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:37508796C>T	uc001iza.1	+	34	4087	c.3988C>T	c.(3988-3990)CAA>TAA	p.Q1330*		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1386						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CCGTATATATCAATATGAAAA	0.279													4	3					0	0	0.009096	0	0
ZNF37A	7587	broad.mit.edu	37	10	38407308	38407308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:38407308C>T	uc001izk.2	+	8	2048	c.1229C>T	c.(1228-1230)CCT>CTT	p.P410L	ZNF37A_uc001izl.2_Missense_Mutation_p.P410L|ZNF37A_uc001izm.2_Missense_Mutation_p.P410L	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	410						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						GGTGAAAAACCTTATGAATGT	0.393													12	15					0	0	0.010729	0	0
ZNF37B	100129482	broad.mit.edu	37	10	43016349	43016349	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:43016349G>A	uc001jab.3	-	5		c.2851C>T			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						GAATTCTCAGGGAAAGCTTTC	0.373													20	19					0	0	0.008871	0	0
RASGEF1A	221002	broad.mit.edu	37	10	43691949	43691949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:43691949C>T	uc001jap.1	-	12	1477	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	RASGEF1A_uc001jao.1_Missense_Mutation_p.E474K	NM_145313	NP_660356	Q8N9B8	RGF1A_HUMAN	RasGEF domain family, member 1A	466					cell migration|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						CTGTCTTTTTCCATGTGGTTC	0.572													29	90					0	0	0.009535	0	0
RBP3	5949	broad.mit.edu	37	10	48390014	48390014	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:48390014G>A	uc001jez.2	-	1	978	c.864C>T	c.(862-864)CCC>CCT	p.P288P		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	288	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CTCCACCAAGGGGCCCCAGGG	0.692													4	25					0	0	0.001168	0	0
GDF2	2658	broad.mit.edu	37	10	48416410	48416410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:48416410C>T	uc001jfa.1	-	1	447	c.284G>A	c.(283-285)AGG>AAG	p.R95K		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	95					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GGACGTGTACCTGTTGTACAG	0.582													32	34					0	0	0.003271	0	0
GDF10	2662	broad.mit.edu	37	10	48429138	48429138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:48429138C>T	uc001jfb.2	-	2	1204	c.748G>A	c.(748-750)GAT>AAT	p.D250N	GDF10_uc009xnp.2_Missense_Mutation_p.D249N|GDF10_uc009xnq.1_Missense_Mutation_p.D250N	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	250					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						ATGGCCAGATCGTTGGCATAG	0.672													8	14					0	0	0.004482	0	0
GDF10	2662	broad.mit.edu	37	10	48429221	48429221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:48429221G>A	uc001jfb.2	-	2	1121	c.665C>T	c.(664-666)TCC>TTC	p.S222F	GDF10_uc009xnp.2_Missense_Mutation_p.S221F|GDF10_uc009xnq.1_Missense_Mutation_p.S222F	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	222					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CAGCTGGGCGGAGAGGAGCAG	0.706													6	21					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	10	48902369	48902369	+	Silent	SNP	G	A	A	rs111585822		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:48902369G>A	uc009xnv.2	-	3	610	c.504C>T	c.(502-504)ATC>ATT	p.I168I		NM_001077686	NP_001071154			ArfGAP with GTPase domain, ankyrin repeat and PH																		CACCCAGCCCGATGTCCATGT	0.562													46	25					0	0	0.013114	0	0
FRMPD2	143162	broad.mit.edu	37	10	49440233	49440233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:49440233C>T	uc001jgi.2	-	10	1200	c.1093G>A	c.(1093-1095)GGA>AGA	p.G365R	FRMPD2_uc001jgh.2_Missense_Mutation_p.G334R|FRMPD2_uc001jgj.2_Missense_Mutation_p.G343R	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	365	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AAGACAGCTCCCACTGTTGAT	0.493													33	38					0	0	0.003271	0	0
C10orf71	118461	broad.mit.edu	37	10	50531454	50531454	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:50531454G>A	uc010qgp.1	+	3	1203	c.864G>A	c.(862-864)CTG>CTA	p.L288L		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	288											0						CAAAGCTGCTGGAGAGAAAGG	0.537													15	9					0	0	0.004007	0	0
ERCC6	2074	broad.mit.edu	37	10	50690779	50690779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:50690779G>A	uc001jhs.3	-	10	2277	c.2123C>T	c.(2122-2124)TCC>TTC	p.S708F	ERCC6_uc010qgr.1_Missense_Mutation_p.S78F|ERCC6_uc001jhr.3_Missense_Mutation_p.S108F	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	708					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GATGGGGACGGAGAACTGCTC	0.448								Direct_reversal_of_damage|NER					30	35					0	0	0.013726	0	0
OGDHL	55753	broad.mit.edu	37	10	50948771	50948771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:50948771C>T	uc001jie.2	-	16	2267	c.2125G>A	c.(2125-2127)GAG>AAG	p.E709K	OGDHL_uc009xog.2_Missense_Mutation_p.E736K|OGDHL_uc010qgt.1_Missense_Mutation_p.E652K|OGDHL_uc010qgu.1_Missense_Mutation_p.E500K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	709					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						ACTCCGTACTCCGAGAGGGAG	0.647													8	26					0	0	0.004482	0	0
OGDHL	55753	broad.mit.edu	37	10	50964927	50964927	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:50964927G>A	uc001jie.2	-	3	412	c.270C>T	c.(268-270)CCC>CCT	p.P90P	OGDHL_uc009xog.2_Silent_p.P117P|OGDHL_uc010qgt.1_Intron|OGDHL_uc010qgu.1_Intron|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	90					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CAACAGAAGGGGGCCGTGGCT	0.592													36	41					0	0	0.004289	0	0
AGAP7	653268	broad.mit.edu	37	10	51465404	51465404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:51465404G>A	uc001jio.2	-	7	1178	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	351	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GAAGCATATGGAGTCACCCAG	0.547													42	165					0	0	0.009718	0	0
SGMS1	259230	broad.mit.edu	37	10	52071083	52071083	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:52071083C>T	uc001jje.2	-	9	1788	c.834G>A	c.(832-834)GGG>GGA	p.G278G	SGMS1_uc010qhk.1_Silent_p.G109G|SGMS1_uc009xot.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	284	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						ACAGATAGTCCCCACACATGT	0.463													12	34					0	0	0.010729	0	0
PRKG1	5592	broad.mit.edu	37	10	54041916	54041916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:54041916G>A	uc001jjm.2	+	14	1698	c.1504G>A	c.(1504-1506)GAT>AAT	p.D502N	PRKG1_uc001jjo.2_Missense_Mutation_p.D517N|PRKG1_uc009xow.1_Missense_Mutation_p.D220N|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	502	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TTGTAAGGTTGATTTTGGCTT	0.333													22	21					0	0	0.012319	0	0
ANK3	288	broad.mit.edu	37	10	61833636	61833636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:61833636C>T	uc001jky.2	-	37	7195	c.7003G>A	c.(7003-7005)GAA>AAA	p.E2335K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2335					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTACCTTTTTCGATGTGGACT	0.428													31	90					0	0	0.008361	0	0
ANK3	288	broad.mit.edu	37	10	61959912	61959913	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:61959912_61959913CC>TT	uc001jky.2	-	13	1657_1658	c.1465_1466GG>AA	c.(1465-1467)GGA>AAA	p.G489K	ANK3_uc010qih.1_Missense_Mutation_p.G472K|ANK3_uc001jkz.3_Missense_Mutation_p.G483K|ANK3_uc001jlb.1_Missense_Mutation_p.G18K|ANK3_uc001jlc.1_Missense_Mutation_p.G150K	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	489	ANK 13.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TACCTGAGCTCCGTCTTGTACC	0.431													16	30					0	0	0.004672	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648613	62648613	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:62648613G>A	uc001jli.2	-	7	1251	c.813C>T	c.(811-813)ATC>ATT	p.I271I	RHOBTB1_uc001jlh.2_Silent_p.I271I|RHOBTB1_uc001jlj.2_Silent_p.I271I|RHOBTB1_uc001jlk.2_Silent_p.I271I|RHOBTB1_uc009xpe.1_Silent_p.I209I|RHOBTB1_uc001jll.2_Silent_p.I21I	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	271	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					GGTCCTGAAGGATGAACAGAA	0.443													41	44					0	0	0.008740	0	0
RTKN2	219790	broad.mit.edu	37	10	63983057	63983057	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:63983057G>A	uc001jlw.2	-	7	818	c.721C>T	c.(721-723)CTA>TTA	p.L241L	RTKN2_uc009xpf.1_Silent_p.L22L	NM_145307	NP_660350	Q8IZC4	RTKN2_HUMAN	rhotekin 2	241					signal transduction	intracellular					0	Prostate(12;0.0297)|all_hematologic(501;0.215)					TCCAAGGTTAGGGTAGTGTGA	0.294													17	91					0	0	0.008871	0	0
ZNF365	22891	broad.mit.edu	37	10	64159307	64159307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:64159307C>T	uc001jly.3	+	5	1090	c.1028C>T	c.(1027-1029)TCG>TTG	p.S343L	ZNF365_uc001jmb.3_Intron|ZNF365_uc001jmc.2_Intron|ZNF365_uc001jlz.3_Missense_Mutation_p.S328L|ZNF365_uc001jma.3_RNA	NM_014951	NP_055766	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform A	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					CACCCGCATTCGGTATGTAAC	0.493													56	65					0	0	0.014410	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940116	68940116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:68940116G>A	uc009xpn.1	-	7	1129	c.1006C>T	c.(1006-1008)CGC>TGC	p.R336C	CTNNA3_uc001jmw.2_Missense_Mutation_p.R336C|CTNNA3_uc001jmx.3_Missense_Mutation_p.R336C|CTNNA3_uc009xpo.1_Missense_Mutation_p.R196C|CTNNA3_uc001jna.2_Missense_Mutation_p.R348C	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	336	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity	p.R336C(1)		skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGAGCCTGGCGAATGGCGTTG	0.512													42	32					0	0	0.009718	0	0
MYPN	84665	broad.mit.edu	37	10	69966578	69966578	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:69966578G>A	uc001jnm.3	+	20	3896	c.3711G>A	c.(3709-3711)AAG>AAA	p.K1237K	MYPN_uc001jnn.3_Silent_p.K962K|MYPN_uc001jno.3_Silent_p.K1237K|MYPN_uc009xpt.2_Silent_p.K1237K|MYPN_uc010qit.1_Silent_p.K943K|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	1237	Interaction with ACTN.|Ig-like 5.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AGCCAGCCAAGAAATCAGACG	0.478													23	93					0	0	0.003954	0	0
TET1	80312	broad.mit.edu	37	10	70332852	70332852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:70332852C>T	uc001jok.3	+	2	1262	c.757C>T	c.(757-759)CCC>TCC	p.P253S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	253					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TGCTCCTTTTCCCCAAAGAGC	0.448													10	45					0	0	0.001855	0	0
CCAR1	55749	broad.mit.edu	37	10	70515274	70515274	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:70515274C>T	uc001joo.2	+	13	1725	c.1606C>T	c.(1606-1608)CTA>TTA	p.L536L	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Silent_p.L341L|CCAR1_uc009xpx.1_Silent_p.L510L|CCAR1_uc001jon.1_Silent_p.L482L|CCAR1_uc010qiz.1_Silent_p.L521L|CCAR1_uc010qja.1_Silent_p.L521L|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	536					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						AGGCATTGATCTAAGTGTGTG	0.413													39	73					0	0	0.013114	0	0
COL13A1	1305	broad.mit.edu	37	10	71681679	71681679	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:71681679C>T	uc001jpr.1	+	20	1634	c.1098C>T	c.(1096-1098)CTC>CTT	p.L366L	COL13A1_uc001jqj.1_Silent_p.L366L|COL13A1_uc001jps.1_Silent_p.L337L|COL13A1_uc001jpt.1_Silent_p.L325L|COL13A1_uc001jpu.1_Silent_p.L347L|COL13A1_uc001jpv.1_Silent_p.L366L|COL13A1_uc001jpx.1_Silent_p.L344L|COL13A1_uc001jpw.1_Silent_p.L313L|COL13A1_uc001jpy.1_Silent_p.L304L|COL13A1_uc001jpz.1_Silent_p.L309L|COL13A1_uc001jqa.1_Silent_p.L306L|COL13A1_uc001jqc.1_Silent_p.L366L|COL13A1_uc001jqb.1_Silent_p.L315L|COL13A1_uc001jql.2_Silent_p.L366L|COL13A1_uc001jqd.1_Silent_p.L354L|COL13A1_uc001jqe.1_Silent_p.L349L|COL13A1_uc001jqf.1_Silent_p.L347L|COL13A1_uc001jqg.1_Silent_p.L344L|COL13A1_uc001jqh.1_Silent_p.L366L|COL13A1_uc001jqi.1_Silent_p.L366L|COL13A1_uc010qjf.1_Silent_p.L156L|COL13A1_uc001jqk.1_Silent_p.L204L	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	366	Extracellular (Potential).|Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TTCCTGGCCTCCTGGGGCAGA	0.592													3	5					0	0	0.009096	0	0
COL13A1	1305	broad.mit.edu	37	10	71682509	71682509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:71682509G>A	uc001jpr.1	+	21	1692	c.1156G>A	c.(1156-1158)GAA>AAA	p.E386K	COL13A1_uc001jqj.1_Missense_Mutation_p.E386K|COL13A1_uc001jps.1_Missense_Mutation_p.E357K|COL13A1_uc001jpt.1_Missense_Mutation_p.E345K|COL13A1_uc001jpu.1_Missense_Mutation_p.E367K|COL13A1_uc001jpv.1_Missense_Mutation_p.E386K|COL13A1_uc001jpx.1_Missense_Mutation_p.E364K|COL13A1_uc001jpw.1_Missense_Mutation_p.E333K|COL13A1_uc001jpy.1_Missense_Mutation_p.E324K|COL13A1_uc001jpz.1_Missense_Mutation_p.E329K|COL13A1_uc001jqa.1_Missense_Mutation_p.E326K|COL13A1_uc001jqc.1_Missense_Mutation_p.E386K|COL13A1_uc001jqb.1_Missense_Mutation_p.E335K|COL13A1_uc001jql.2_Missense_Mutation_p.E386K|COL13A1_uc001jqd.1_Missense_Mutation_p.E374K|COL13A1_uc001jqe.1_Missense_Mutation_p.E369K|COL13A1_uc001jqf.1_Missense_Mutation_p.E367K|COL13A1_uc001jqg.1_Missense_Mutation_p.E364K|COL13A1_uc001jqh.1_Missense_Mutation_p.E386K|COL13A1_uc001jqi.1_Missense_Mutation_p.E386K|COL13A1_uc010qjf.1_Missense_Mutation_p.E176K|COL13A1_uc001jqk.1_Missense_Mutation_p.E224K	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	386	Extracellular (Potential).|Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	AGGCAGAGGGGAACCTGGCCC	0.612													4	6					0	0	0.001168	0	0
AIFM2	84883	broad.mit.edu	37	10	71880960	71880960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:71880960G>A	uc010qjg.1	-	3	315	c.302C>T	c.(301-303)CCC>CTC	p.P101L	AIFM2_uc001jqp.1_Missense_Mutation_p.P101L	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	101					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						ATGAGAGAAGGGCAGGGCCTG	0.448													7	29					0	0	0.004482	0	0
PRF1	5551	broad.mit.edu	37	10	72358730	72358730	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:72358730G>A	uc009xqg.2	-	3	908	c.747C>T	c.(745-747)CTC>CTT	p.L249L	PRF1_uc001jrf.3_Silent_p.L249L	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	249	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CGTTGTCCGTGAGCCCTTCCA	0.637			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				28	30					0	0	0.010818	0	0
CDH23	64072	broad.mit.edu	37	10	73405631	73405631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:73405631C>T	uc001jrx.3	+	12	1561	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F	CDH23_uc001jrw.3_Missense_Mutation_p.S395F|CDH23_uc001jry.2_Missense_Mutation_p.S11F|CDH23_uc001jrz.2_Missense_Mutation_p.S11F	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	395	Cadherin 4.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGGAACAACTCCCACCACTTC	0.582													18	15					0	0	0.010504	0	0
C10orf54	64115	broad.mit.edu	37	10	73533131	73533131	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:73533131G>C	uc001jsd.2	-	1	207	c.66C>G	c.(64-66)TTC>TTG	p.F22L	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_5'UTR|C10orf54_uc009xqm.2_Missense_Mutation_p.F22L|C10orf54_uc001jsf.1_Missense_Mutation_p.F22L	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	22						integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						ACGCAGCCAGGAAGAGAGCGA	0.677													4	6					0	0	0.000602	0	0
PSAP	5660	broad.mit.edu	37	10	73587852	73587852	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:73587852C>T	uc001jsm.2	-	6	743	c.639G>A	c.(637-639)CGG>CGA	p.R213R		NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein	213	Saposin B-type 2.				glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						TGGAGTTGGTCCGTACAGCAG	0.537													50	45					0	0	0.014410	0	0
P4HA1	5033	broad.mit.edu	37	10	74806829	74806829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:74806829G>A	uc010qka.1	-	9	1265	c.931C>T	c.(931-933)CGC>TGC	p.R311C	P4HA1_uc001jtg.2_Missense_Mutation_p.R311C|P4HA1_uc001jth.2_Missense_Mutation_p.R311C|P4HA1_uc010qkb.1_Missense_Mutation_p.R311C|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	311						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TCATGGTAGCGGCAAAAGAGT	0.353													19	24					0	0	0.008871	0	0
ADK	132	broad.mit.edu	37	10	75960589	75960590	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:75960589_75960590CT>TG	uc001jwi.2	+	2	205_206	c.133_134CT>TG	c.(133-135)CTT>TGT	p.L45C	ADK_uc010qlb.1_Missense_Mutation_p.L45C|ADK_uc001jwj.2_Missense_Mutation_p.L28C|ADK_uc010qlc.1_Missense_Mutation_p.L28C	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	45					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	CAAAGATTTCCTTGATAAGTAA	0.327													6	24					0	0	0.004672	0	0
DUPD1	338599	broad.mit.edu	37	10	76797602	76797602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:76797602C>T	uc001jwq.1	-	3	655	c.655G>A	c.(655-657)GAG>AAG	p.E219K		NM_001003892	NP_001003892	Q68J44	DUPD1_HUMAN	dual specificity phosphatase and pro isomerase	219						cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)	2	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					GCCTACAGCTCCCTGCCATCC	0.637													45	48					0	0	0.014410	0	0
C10orf58	84293	broad.mit.edu	37	10	82185750	82185750	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:82185750C>T	uc001kcc.3	+	4	559	c.399C>T	c.(397-399)TTC>TTT	p.F133F	C10orf58_uc001kcd.3_Silent_p.F122F|C10orf58_uc001kce.3_Silent_p.F133F|C10orf58_uc001kcf.3_Silent_p.F133F	NM_032333	NP_115709	Q9BRX8	CJ058_HUMAN	hypothetical protein LOC84293 precursor	133						extracellular region					0			Colorectal(32;0.229)			GAGAAATCTTCCTGGATGAAA	0.512													17	70					0	0	0.008871	0	0
NRG3	10718	broad.mit.edu	37	10	83635816	83635816	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:83635816C>T	uc001kco.2	+	1	747	c.720C>T	c.(718-720)CCC>CCT	p.P240P	NRG3_uc010qlz.1_Silent_p.P240P|NRG3_uc001kcp.2_5'Flank|NRG3_uc001kcq.2_5'Flank	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	240	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		ATTCTACTCCCTCCTGGACCC	0.512													9	5					0	0	0.013537	0	0
FAM190B	54462	broad.mit.edu	37	10	86131045	86131045	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:86131045C>T	uc001kdh.1	+	2	431	c.237C>T	c.(235-237)GTC>GTT	p.V79V	FAM190B_uc001kdg.1_Silent_p.V79V|FAM190B_uc010qmd.1_Silent_p.V79V	NM_018999	NP_061872	Q9H7U1	F190B_HUMAN	granule cell antiserum positive 14	79										ovary(3)|skin(1)	4						CACAAGGTGTCGAAGAGCCTA	0.333													10	23					0	0	0.006214	0	0
ANKRD22	118932	broad.mit.edu	37	10	90582746	90582746	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:90582746C>T	uc001kfj.3	-	6	896	c.528G>A	c.(526-528)CGG>CGA	p.R176R		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	176											0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		ATTTTAATCTCCGTGCAATAT	0.403													48	56					0	0	0.014410	0	0
IFIT1	3434	broad.mit.edu	37	10	91162436	91162436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:91162436G>A	uc001kgi.2	+	2	552	c.404G>A	c.(403-405)AGA>AAA	p.R135K	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|IFIT1_uc009xtt.2_Missense_Mutation_p.R135K|IFIT1_uc001kgj.2_Missense_Mutation_p.R104K	NM_001548	NP_001539	P09914	IFIT1_HUMAN	interferon-induced protein with	135					cellular response to exogenous dsRNA|intracellular transport of viral proteins in host cell|negative regulation of defense response to virus by host|negative regulation of helicase activity|negative regulation of protein binding|negative regulation of viral genome replication|positive regulation of viral genome replication|response to virus|type I interferon-mediated signaling pathway	cytoplasm	protein binding				0						TTCCGCTATAGAATGGAGTGT	0.483													11	49					0	0	0.010729	0	0
BTAF1	9044	broad.mit.edu	37	10	93770907	93770907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:93770907G>A	uc001khr.2	+	29	4279	c.4181G>A	c.(4180-4182)AGA>AAA	p.R1394K		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1394	Helicase ATP-binding.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GATTTCTTTAGGTAAGaatta	0.264													9	37					0	0	0.004482	0	0
EXOC6	54536	broad.mit.edu	37	10	94715422	94715422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:94715422C>T	uc001kig.2	+	17	1790	c.1724C>T	c.(1723-1725)TCC>TTC	p.S575F	EXOC6_uc010qnr.1_Missense_Mutation_p.S591F|EXOC6_uc001kie.2_Missense_Mutation_p.S570F|EXOC6_uc009xub.2_Missense_Mutation_p.S574F|EXOC6_uc009xuc.2_Missense_Mutation_p.S472F|EXOC6_uc001kih.2_RNA|EXOC6_uc001kii.2_Missense_Mutation_p.S149F	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	575					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				ACAAATATTTCCCAAGAAACT	0.333													83	98					0	0	0.014410	0	0
EXOC6	54536	broad.mit.edu	37	10	94733941	94733941	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:94733941C>T	uc001kig.2	+	18	1971	c.1905C>T	c.(1903-1905)GAC>GAT	p.D635D	EXOC6_uc010qnr.1_Silent_p.D651D|EXOC6_uc001kie.2_Silent_p.D630D|EXOC6_uc009xub.2_Silent_p.D634D|EXOC6_uc009xuc.2_Silent_p.D532D|EXOC6_uc001kih.2_RNA|EXOC6_uc001kii.2_Silent_p.D209D	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	635					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				ATTTAATGGACCTTATAAATT	0.299													87	351					0	0	0.014410	0	0
MYOF	26509	broad.mit.edu	37	10	95076571	95076571	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:95076571C>T	uc001kin.2	-	50	5722	c.5599_splice	c.e50-1	p.E1867_splice	MYOF_uc001kio.2_Splice_Site_p.E1854_splice|MYOF_uc009xue.2_Splice_Site	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a						blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AGAAATGCTCCTAAAACAAAA	0.448													11	33					0	0	0.010729	0	0
MYOF	26509	broad.mit.edu	37	10	95191274	95191274	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:95191274C>T	uc001kin.2	-	4	360	c.237_splice	c.e4-1	p.K79_splice	MYOF_uc001kio.2_Splice_Site_p.K79_splice|MYOF_uc001kip.3_Splice_Site_p.K79_splice|MYOF_uc009xuf.2_Splice_Site_p.K61_splice	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a						blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						GCCAATTAATCTGCAGGGAAA	0.493													10	25					0	0	0.008291	0	0
GPR120	338557	broad.mit.edu	37	10	95335855	95335855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:95335855C>T	uc010qnt.1	+	2	631	c.575C>T	c.(574-576)TCG>TTG	p.S192L	GPR120_uc010qnu.1_Missense_Mutation_p.S192L	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	192	Extracellular (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				TAGGAAATTTCGATTTGCACA	0.438													36	47					0	0	0.006999	0	0
PDE6C	5146	broad.mit.edu	37	10	95372708	95372709	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:95372708_95372709CC>TT	uc001kiu.3	+	1	364_365	c.226_227CC>TT	c.(226-228)CCA>TTA	p.P76L		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	76	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GGGGGGCACCCCAGAGCAGGGG	0.663													6	33					0	0	0.004672	0	0
PDE6C	5146	broad.mit.edu	37	10	95400746	95400746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:95400746G>A	uc001kiu.3	+	14	1945	c.1807G>A	c.(1807-1809)GAT>AAT	p.D603N		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	603		Divalent metal cation 2 (By similarity).|Divalent metal cation 1 (By similarity).			visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TTTCTGCCATGATATTGACCA	0.383													22	27					0	0	0.006320	0	0
CYP2C18	1562	broad.mit.edu	37	10	96448013	96448013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:96448013G>A	uc001kjv.3	+	3	789	c.463G>A	c.(463-465)GAG>AAG	p.E155K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E155K|CYP2C19_uc009xus.1_Missense_Mutation_p.E20K|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	155					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CCTTGTGGAGGAGTTGAGAAA	0.378													23	89					0	0	0.003954	0	0
CYP2C18	1562	broad.mit.edu	37	10	96448017	96448017	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:96448017T>G	uc001kjv.3	+	3	793	c.467T>G	c.(466-468)TTG>TGG	p.L156W	CYP2C18_uc001kjw.3_Missense_Mutation_p.L156W|CYP2C19_uc009xus.1_Missense_Mutation_p.L21W|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	156					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GTGGAGGAGTTGAGAAAAACC	0.363													22	85					0	0	0.002780	0	0
CYP2C18	1562	broad.mit.edu	37	10	96484201	96484201	+	Missense_Mutation	SNP	G	A	A	rs142667327		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:96484201G>A	uc001kjv.3	+	7	1386	c.1060G>A	c.(1060-1062)GAG>AAG	p.E354K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E295K|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	354					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TGTGGTGCACGAGATCCAGAG	0.498													65	53					0	0	0.014410	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535268	96535268	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:96535268C>T	uc010qnz.1	+	3	453	c.453C>T	c.(451-453)TGC>TGT	p.C151C	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Silent_p.C129C	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	151					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AAGCCCGCTGCCTTGTGGAGG	0.507													63	77					0	0	0.014410	0	0
C10orf129	142827	broad.mit.edu	37	10	96967153	96967153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:96967153G>A	uc001kke.2	+	4	717	c.592G>A	c.(592-594)GAT>AAT	p.D198N	C10orf129_uc009xuu.1_Missense_Mutation_p.D108N	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	198					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		TGGGTGGTTGGATTTCAAGAA	0.418													23	30					0	0	0.003330	0	0
ENTPD1	953	broad.mit.edu	37	10	97599452	97599452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:97599452G>A	uc001klh.3	+	3	473	c.149G>A	c.(148-150)GGG>GAG	p.G50E	ENTPD1_uc001kle.1_Missense_Mutation_p.G57E|ENTPD1_uc001kli.3_Missense_Mutation_p.G57E|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.G62E|ENTPD1_uc010qok.1_5'UTR|ENTPD1_uc010qol.1_5'UTR|ENTPD1_uc010qom.1_Missense_Mutation_p.G50E|ENTPD1_uc010qon.1_5'UTR|ENTPD1_uc009xva.2_Intron|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	50	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		TTTCAGTATGGGATTGTGCTG	0.408													57	89					0	0	0.014410	0	0
BLNK	29760	broad.mit.edu	37	10	97983604	97983604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:97983604G>A	uc001kls.3	-	6	681	c.503C>T	c.(502-504)CCC>CTC	p.P168L	BLNK_uc001kme.3_Missense_Mutation_p.P86L|BLNK_uc001klt.3_Missense_Mutation_p.P82L|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_Missense_Mutation_p.P86L|BLNK_uc001klv.3_Intron|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.P168L|BLNK_uc001kly.3_Missense_Mutation_p.P168L|BLNK_uc001klz.3_Intron|BLNK_uc001kma.3_Missense_Mutation_p.P168L|BLNK_uc001kmb.3_Intron|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Missense_Mutation_p.P86L|BLNK_uc009xvd.2_Intron	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	168	Pro-rich.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		GAGGCCTTTGGGTTTGGGTGG	0.592													17	83					0	0	0.006122	0	0
TLL2	7093	broad.mit.edu	37	10	98146728	98146728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:98146728C>T	uc001kml.1	-	14	2060	c.1834G>A	c.(1834-1836)GAT>AAT	p.D612N		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	612	EGF-like 1; calcium-binding (Potential).				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		ATCTTCTTATCGGCGGCCAGC	0.577													46	57					0	0	0.014410	0	0
TM9SF3	56889	broad.mit.edu	37	10	98325103	98325103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:98325103G>A	uc001kmm.3	-	3	596	c.379C>T	c.(379-381)CAT>TAT	p.H127Y	TM9SF3_uc010qot.1_Missense_Mutation_p.H127Y	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	127						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		TACCAGTAATGATTTTTTATG	0.299													38	133					0	0	0.004878	0	0
C10orf12	26148	broad.mit.edu	37	10	98743264	98743264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:98743264C>T	uc001kmv.2	+	1	2224	c.2117C>T	c.(2116-2118)TCG>TTG	p.S706L		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	706										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		CTTGGGTTGTCGAGTAGTGGA	0.507													31	42					0	0	0.013726	0	0
SLIT1	6585	broad.mit.edu	37	10	98807584	98807584	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:98807584C>T	uc001kmw.2	-	16	1749	c.1497G>A	c.(1495-1497)GAG>GAA	p.E499E	SLIT1_uc009xvh.1_Silent_p.E509E	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	499					axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GCTGGTAATCCTCCGTGCCTG	0.652													12	21					0	0	0.010729	0	0
SLIT1	6585	broad.mit.edu	37	10	98819885	98819885	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:98819885G>A	uc001kmw.2	-	10	1224	c.972C>T	c.(970-972)ATC>ATT	p.I324I	SLIT1_uc009xvh.1_Silent_p.I324I	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	324	LRR 7.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CTCCAGGAGGGATGGACTTGA	0.622													25	30					0	0	0.004656	0	0
ARHGAP19	84986	broad.mit.edu	37	10	99052382	99052382	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:99052382C>A	uc001knb.2	-	1	32	c.3G>T	c.(1-3)ATG>ATT	p.M1I	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.M1I|ARHGAP19_uc009xvk.2_5'UTR	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	1					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		CCTCAGTCGCCATCTTCGTCA	0.572													8	37					0.000274275	0.000299813	0.004482	1	0
HPSE2	60495	broad.mit.edu	37	10	100249824	100249824	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:100249824A>G	uc001kpn.1	-	10	1510	c.1450T>C	c.(1450-1452)TGC>CGC	p.C484R	HPSE2_uc009xwc.1_Missense_Mutation_p.C474R|HPSE2_uc001kpo.1_Missense_Mutation_p.C416R|HPSE2_uc009xwd.1_Missense_Mutation_p.C362R	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	484					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		TGGTTTGTGCAGTGAGCATAA	0.567													28	119					0	0	0.009535	0	0
HPSE2	60495	broad.mit.edu	37	10	100249933	100249933	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:100249933G>A	uc001kpn.1	-	10	1401	c.1341C>T	c.(1339-1341)CTC>CTT	p.L447L	HPSE2_uc009xwc.1_Silent_p.L437L|HPSE2_uc001kpo.1_Silent_p.L379L|HPSE2_uc009xwd.1_Silent_p.L325L	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	447					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		GGCGCTTGTAGAGGAGAGAGA	0.522													36	42					0	0	0.003755	0	0
PKD2L1	9033	broad.mit.edu	37	10	102048186	102048186	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:102048186G>A	uc001kqx.1	-	16	2768	c.2385C>T	c.(2383-2385)TCC>TCT	p.S795S	BLOC1S2_uc001kqv.1_5'Flank|BLOC1S2_uc001kqw.1_5'Flank|PKD2L1_uc009xwm.1_Silent_p.S748S	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	795	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		TCTCACCACGGGAGAGTCTCC	0.517													51	73					0	0	0.014410	0	0
SEC31B	25956	broad.mit.edu	37	10	102267248	102267248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:102267248G>A	uc001krc.1	-	7	818	c.716C>T	c.(715-717)CCC>CTC	p.P239L	SEC31B_uc010qpo.1_Missense_Mutation_p.P238L|SEC31B_uc001krd.1_5'UTR|SEC31B_uc001krf.1_5'UTR|SEC31B_uc001kre.1_5'UTR|SEC31B_uc001krg.1_Intron|SEC31B_uc010qpp.1_Missense_Mutation_p.P242L|SEC31B_uc009xwn.1_Missense_Mutation_p.P239L|SEC31B_uc009xwo.1_Missense_Mutation_p.P239L|SEC31B_uc010qpq.1_Missense_Mutation_p.P82L|SEC31B_uc010qpr.1_RNA	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	239	WD 4.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		CTGAATCACGGGAAGTCGATC	0.562													17	66					0	0	0.006122	0	0
FAM178A	55719	broad.mit.edu	37	10	102689755	102689755	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:102689755G>A	uc001krt.3	+	8	2875	c.2333_splice	c.e8+1	p.K778_splice	FAM178A_uc001krs.2_Splice_Site_p.K778_splice	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1												0						TTATTCTTAAGTAAGTAGAAA	0.264													9	26					0	0	0.004482	0	0
SEMA4G	57715	broad.mit.edu	37	10	102739941	102739941	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:102739941C>T	uc010qpt.1	+	11	1634	c.1191C>T	c.(1189-1191)GTC>GTT	p.V397V	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Silent_p.V397V|SEMA4G_uc001krx.2_Silent_p.V397V|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	397	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		CATCCCTGGTCCTGGACTTTG	0.572													9	27					0	0	0.008291	0	0
SEMA4G	57715	broad.mit.edu	37	10	102740680	102740680	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:102740680C>T	uc010qpt.1	+	13	2012	c.1569C>T	c.(1567-1569)CCC>CCT	p.P523P	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Silent_p.P523P|SEMA4G_uc001krx.2_Silent_p.P523P|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	523	Extracellular (Potential).|PSI.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		CCCGAGACCCCTACTGTGGCT	0.632													57	62					0	0	0.014410	0	0
C10orf2	56652	broad.mit.edu	37	10	102748999	102748999	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:102748999G>A	uc001ksf.2	+	1	1707	c.1032G>A	c.(1030-1032)GAG>GAA	p.E344E	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Silent_p.E344E|C10orf2_uc001ksi.2_Intron|C10orf2_uc010qpv.1_Intron|C10orf2_uc001ksh.2_Intron	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	344					cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GTCCCCTGGAGGCCCTGAACG	0.582													15	42					0	0	0.003163	0	0
POLL	27343	broad.mit.edu	37	10	103339296	103339296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:103339296C>T	uc001ktg.1	-	8	2408	c.1642G>A	c.(1642-1644)GGC>AGC	p.G548S	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_Missense_Mutation_p.G221S|POLL_uc001kte.1_Missense_Mutation_p.G240S|POLL_uc001kth.1_Missense_Mutation_p.G273S|POLL_uc001kti.1_Missense_Mutation_p.G548S|POLL_uc001ktj.1_Missense_Mutation_p.G548S|POLL_uc001ktf.2_Missense_Mutation_p.G456S|POLL_uc001ktk.1_Missense_Mutation_p.G287S|POLL_uc010qqa.1_Missense_Mutation_p.G287S|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Missense_Mutation_p.G548S|POLL_uc001ktl.2_Missense_Mutation_p.G460S|POLL_uc010qqc.1_Missense_Mutation_p.G240S	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	548					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		AGCACTCGGCCAGGCCCCACC	0.627								DNA_polymerases_(catalytic_subunits)					16	42					0	0	0.003163	0	0
GBF1	8729	broad.mit.edu	37	10	104125239	104125239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:104125239C>T	uc001kux.1	+	18	2429	c.2189C>T	c.(2188-2190)CCA>CTA	p.P730L	GBF1_uc001kuy.1_Missense_Mutation_p.P730L|GBF1_uc001kuz.1_Missense_Mutation_p.P731L	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	730	SEC7.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CTCACCATCCCAATGGACAAC	0.488													12	51					0	0	0.013537	0	0
PSD	5662	broad.mit.edu	37	10	104165244	104165244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:104165244G>A	uc001kvg.1	-	12	2712	c.2185C>T	c.(2185-2187)CCC>TCC	p.P729S	PSD_uc001kve.1_5'UTR|PSD_uc001kvf.1_Missense_Mutation_p.P98S|PSD_uc001kvh.1_Missense_Mutation_p.P350S|PSD_uc009xxd.1_Missense_Mutation_p.P729S	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	729					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		ATGACCTTGGGGTTGGGGTCG	0.672													13	51					0	0	0.013537	0	0
PSD	5662	broad.mit.edu	37	10	104173563	104173563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:104173563C>T	uc001kvg.1	-	5	2043	c.1516G>A	c.(1516-1518)GAG>AAG	p.E506K	PSD_uc001kvh.1_Missense_Mutation_p.E127K|PSD_uc009xxd.1_Missense_Mutation_p.E506K	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	506					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		AGGCTGTCCTCTGAGTGGCAG	0.622													21	24					0	0	0.014323	0	0
ACTR1A	10121	broad.mit.edu	37	10	104248026	104248027	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:104248026_104248027GG>AA	uc001kvv.2	-	4	303_304	c.195_196CC>TT	c.(193-198)CACCGA>CATTGA	p.R66*	ACTR1A_uc010qqn.1_5'UTR|ACTR1A_uc010qqo.1_Nonsense_Mutation_p.R19*	NM_005736	NP_005727	P61163	ACTZ_HUMAN	ARP1 actin-related protein 1 homolog A,	66					G2/M transition of mitotic cell cycle|vesicle-mediated transport	centrosome|cytosol|dynactin complex	ATP binding			central_nervous_system(1)	1		Colorectal(252;0.122)		Epithelial(162;5.34e-09)|all cancers(201;1.43e-07)|BRCA - Breast invasive adenocarcinoma(275;0.222)		AGCAGCCCTCGGTGCTCCTGGG	0.515													10	52					0	0	0.004672	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105386875	105386875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:105386875G>A	uc001kxj.1	-	9	829	c.689C>T	c.(688-690)TCC>TTC	p.S230F	SH3PXD2A_uc010qqr.1_Missense_Mutation_p.S92F|SH3PXD2A_uc010qqs.1_Missense_Mutation_p.S65F|SH3PXD2A_uc010qqt.1_Missense_Mutation_p.S107F|SH3PXD2A_uc009xxn.1_Missense_Mutation_p.S65F|SH3PXD2A_uc010qqu.1_Missense_Mutation_p.S145F	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	230					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		GTTGATGTCGGAGTCATCCCG	0.607													36	45					0	0	0.005524	0	0
COL17A1	1308	broad.mit.edu	37	10	105794047	105794047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:105794047C>T	uc001kxr.2	-	52	3981	c.3812G>A	c.(3811-3813)GGG>GAG	p.G1271E	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1271	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TCCCTGCGGCCCAGGAGGGCC	0.652													3	8					0	0	0.004672	0	0
CCDC147	159686	broad.mit.edu	37	10	106152114	106152114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:106152114G>A	uc001kyh.2	+	10	1623	c.1489G>A	c.(1489-1491)GAC>AAC	p.D497N		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	497	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TGTGAGATCAGACAGAAATCT	0.299													47	51					0	0	0.014410	0	0
CCDC147	159686	broad.mit.edu	37	10	106160609	106160609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:106160609C>T	uc001kyh.2	+	13	2121	c.1987C>T	c.(1987-1989)CGC>TGC	p.R663C		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	663	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CAAGAAGCTTCGCCGGGAAAA	0.478													17	43					0	0	0.006122	0	0
CCDC147	159686	broad.mit.edu	37	10	106214279	106214279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:106214279G>A	uc001kyh.2	+	18	2744	c.2610G>A	c.(2608-2610)ATG>ATA	p.M870I		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	870										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CAACCAAAATGACGTTCTAAC	0.458													20	63					0	0	0.007413	0	0
CASP7	840	broad.mit.edu	37	10	115481443	115481443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:115481443C>T	uc001lan.2	+	4	455	c.281C>T	c.(280-282)GCC>GTC	p.A94V	CASP7_uc001lam.2_Missense_Mutation_p.A94V|CASP7_uc001lao.2_Missense_Mutation_p.A127V|CASP7_uc001lap.2_Missense_Mutation_p.A94V|CASP7_uc001laq.2_Missense_Mutation_p.A94V|CASP7_uc010qsa.1_Missense_Mutation_p.A179V|CASP7_uc010qsb.1_Missense_Mutation_p.A69V	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	94					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		GACAAAGATGCCGAGGCGCTC	0.502													18	77					0	0	0.010504	0	0
C10orf118	55088	broad.mit.edu	37	10	115895958	115895958	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:115895958G>A	uc001lbb.1	-	8	2026	c.1374C>T	c.(1372-1374)GTC>GTT	p.V458V	C10orf118_uc009xyd.1_Silent_p.V56V|C10orf118_uc001lbc.1_Silent_p.V458V|C10orf118_uc009xye.1_RNA	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	458	Potential.									ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		CTCCTTTTGTGACTCTAAGCT	0.294													11	50					0	0	0.001855	0	0
FAM160B1	57700	broad.mit.edu	37	10	116620595	116620595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:116620595C>T	uc001lcb.2	+	15	2370	c.2035C>T	c.(2035-2037)CCT>TCT	p.P679S	FAM160B1_uc001lcc.2_Missense_Mutation_p.P679S	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	679										lung(1)	1						CCTTTTGGATCCTTACGTGAA	0.418													30	125					0	0	0.012213	0	0
KCNK18	338567	broad.mit.edu	37	10	118969163	118969163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:118969163C>T	uc010qsr.1	+	3	508	c.508C>T	c.(508-510)CCT>TCT	p.P170S		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	170	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CCGAAAATTCCCTTTCTTTAC	0.507													58	66					0	0	0.014410	0	0
PDZD8	118987	broad.mit.edu	37	10	119044086	119044086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:119044086G>A	uc001lde.1	-	5	2357	c.2158C>T	c.(2158-2160)CCT>TCT	p.P720S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	720					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		AACTTGAAAGGATCCCTGCAC	0.423													16	48					0	0	0.004007	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122263337	122263337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:122263337G>A	uc001lev.1	+	2	416	c.64G>A	c.(64-66)GAG>AAG	p.E22K	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.E22K|PPAPDC1A_uc009xzl.1_Missense_Mutation_p.E22K|PPAPDC1A_uc001lew.1_Missense_Mutation_p.E22K|PPAPDC1A_uc001lex.1_Missense_Mutation_p.E22K|PPAPDC1A_uc001ley.1_5'UTR	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	22	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		CAGTTTTACAGAGTTTTTGGA	0.458													7	27					0	0	0.001984	0	0
TACC2	10579	broad.mit.edu	37	10	123847306	123847306	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:123847306T>C	uc001lfv.2	+	4	5651	c.5291T>C	c.(5290-5292)CTT>CCT	p.L1764P	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.L1764P|TACC2_uc010qtv.1_Missense_Mutation_p.L1764P	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1764						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACAGCTGCCCTTCATGGGGAC	0.642													13	5					0	0	0.003163	0	0
TACC2	10579	broad.mit.edu	37	10	124008235	124008235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124008235G>A	uc001lfv.2	+	20	8830	c.8470G>A	c.(8470-8472)GAC>AAC	p.D2824N	TACC2_uc001lfw.2_Missense_Mutation_p.D970N|TACC2_uc009xzx.2_Missense_Mutation_p.D2702N|TACC2_uc010qtv.1_Missense_Mutation_p.D2751N|TACC2_uc001lfx.2_Missense_Mutation_p.D451N|TACC2_uc001lfy.2_Missense_Mutation_p.D447N|TACC2_uc001lfz.2_Missense_Mutation_p.D902N|TACC2_uc001lga.2_Missense_Mutation_p.D872N|TACC2_uc009xzy.2_Missense_Mutation_p.D884N|TACC2_uc001lgb.2_Missense_Mutation_p.D782N	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2824	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGCCCTGGCCGACCTGAACTC	0.572													64	75					0	0	0.014410	0	0
BTBD16	118663	broad.mit.edu	37	10	124050611	124050611	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124050611G>A	uc001lgc.1	+	7	743	c.492G>A	c.(490-492)CTG>CTA	p.L164L	BTBD16_uc001lgd.1_Silent_p.L163L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	164	BTB.									skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCACGGCCCTGAAGAACCTCT	0.597													30	89					0	0	0.010818	0	0
DMBT1	1755	broad.mit.edu	37	10	124339103	124339103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124339103C>T	uc001lgk.1	+	10	795	c.689C>T	c.(688-690)TCC>TTC	p.S230F	DMBT1_uc001lgl.1_Missense_Mutation_p.S230F|DMBT1_uc001lgm.1_Missense_Mutation_p.S230F|DMBT1_uc009xzz.1_Missense_Mutation_p.S230F|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.S82F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	230					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGATCTGAATCCAGTTTGGCC	0.532													80	285					0	0	0.014410	0	0
DMBT1	1755	broad.mit.edu	37	10	124339268	124339268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124339268G>A	uc001lgk.1	+	10	960	c.854G>A	c.(853-855)GGA>GAA	p.G285E	DMBT1_uc001lgl.1_Missense_Mutation_p.G285E|DMBT1_uc001lgm.1_Missense_Mutation_p.G285E|DMBT1_uc009xzz.1_Missense_Mutation_p.G285E|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.G137E	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	285	SRCR 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCAGCCCCAGGAAATGCCCAG	0.612													56	182					0	0	0.014410	0	0
DMBT1	1755	broad.mit.edu	37	10	124351993	124351993	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124351993C>T	uc001lgk.1	+	20	2488	c.2382C>T	c.(2380-2382)CCC>CCT	p.P794P	DMBT1_uc001lgl.1_Silent_p.P784P|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Silent_p.P794P|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Silent_p.P407P	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	794	SRCR 6.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GCTCAGGACCCATTGTTCTGG	0.607													77	98					0	0	0.014410	0	0
DMBT1	1755	broad.mit.edu	37	10	124399865	124399865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124399865C>T	uc001lgk.1	+	52	6971	c.6865C>T	c.(6865-6867)CTC>TTC	p.L2289F	DMBT1_uc001lgl.1_Missense_Mutation_p.L2279F|DMBT1_uc001lgm.1_Missense_Mutation_p.L1661F|DMBT1_uc009xzz.1_Missense_Mutation_p.L2288F|DMBT1_uc010qtx.1_Missense_Mutation_p.L1009F|DMBT1_uc009yab.1_Missense_Mutation_p.L992F|DMBT1_uc009yac.1_Missense_Mutation_p.L583F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2289	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGCTGAAATCCTCCATTCTGA	0.468													12	46					0	0	0.010729	0	0
C10orf120	399814	broad.mit.edu	37	10	124457272	124457272	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:124457272T>C	uc001lgn.2	-	3	1017	c.985A>G	c.(985-987)AAA>GAA	p.K329E		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	329										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GGAGTTGCTTTACGCATGCGC	0.453													32	39					0	0	0.003755	0	0
ADAM12	8038	broad.mit.edu	37	10	127737933	127737933	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:127737933G>A	uc001ljk.2	-	16	2228	c.1815C>T	c.(1813-1815)ATC>ATT	p.I605I	ADAM12_uc010qul.1_Silent_p.I556I|ADAM12_uc001ljm.2_Silent_p.I605I|ADAM12_uc001ljn.2_Silent_p.I602I|ADAM12_uc001ljl.3_Silent_p.I602I	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	605	Extracellular (Potential).|Cys-rich.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		GCTGCAGGGGGATGTTTGTTT	0.557													23	78					0	0	0.014323	0	0
DOCK1	1793	broad.mit.edu	37	10	128788767	128788767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:128788767C>T	uc001ljt.2	+	6	437	c.373C>T	c.(373-375)CTT>TTT	p.L125F	DOCK1_uc010qun.1_Missense_Mutation_p.L125F	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	125					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		GATCTATGACCTTATTGAATG	0.398													11	11					0	0	0.008291	0	0
FAM196A	642938	broad.mit.edu	37	10	128974181	128974181	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:128974181C>A	uc001lju.1	-	1	520	c.479G>T	c.(478-480)CGG>CTG	p.R160L	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Missense_Mutation_p.R160L|FAM196A_uc001ljv.1_Missense_Mutation_p.R160L|FAM196A_uc009yap.1_Missense_Mutation_p.R160L	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	160										ovary(2)	2						GCCACATGGCCGGGCCTCCTC	0.547													4	69					0.00909568	0.00993344	0.009096	1	0
MGMT	4255	broad.mit.edu	37	10	131565116	131565116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:131565116G>A	uc001lkh.2	+	5	598	c.572G>A	c.(571-573)GGA>GAA	p.G191E		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	160										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		AACTACTCCGGAGGACTGGCC	0.652								Direct_reversal_of_damage					7	22					0	0	0.003080	0	0
C10orf93	255352	broad.mit.edu	37	10	134754509	134754509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:134754509C>T	uc001llt.1	-	4	438	c.362G>A	c.(361-363)GGA>GAA	p.G121E	C10orf93_uc001llu.2_Missense_Mutation_p.G121E	NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	121	TPR 1.						binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		CCTCGGTTCTCCTTTGGCAAA	0.428											OREG0020643	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	23					0	0	0.008871	0	0
SCGB1C1	147199	broad.mit.edu	37	11	193726	193726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:193726G>A	uc001loa.1	+	2	90	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_145651	NP_663626	Q8TD33	SG1C1_HUMAN	secretoglobin, family 1C, member 1 precursor	24						extracellular region	binding			skin(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GGCCACAGGGGAGGACAACGA	0.577													18	42					0	0	0.007413	0	0
PHRF1	57661	broad.mit.edu	37	11	607720	607720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:607720C>T	uc001lqe.2	+	14	2395	c.2264C>T	c.(2263-2265)TCC>TTC	p.S755F	PHRF1_uc010qwc.1_Missense_Mutation_p.S754F|PHRF1_uc010qwd.1_Missense_Mutation_p.S753F|PHRF1_uc010qwe.1_Missense_Mutation_p.S751F|PHRF1_uc009ybz.1_Missense_Mutation_p.S545F|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	755							RNA polymerase binding|zinc ion binding				0						GCCCCCAGCTCCCATGGCAGT	0.667													9	18					0	0	0.006214	0	0
MUC2	4583	broad.mit.edu	37	11	1093781	1093781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:1093781C>T	uc001lsx.1	+	33	12713	c.12686C>T	c.(12685-12687)TCC>TTC	p.S4229F		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4229						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	TCCACCTCTTCCCCTCTCACG	0.627													54	190					0	0	0.014410	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651372	1651372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:1651372C>T	uc001lty.2	+	1	340	c.302C>T	c.(301-303)TCC>TTC	p.S101F		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	101	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGCTGTGTCTCCTGTGGGGTG	0.677													80	109					0	0	0.014410	0	0
TNNT3	7140	broad.mit.edu	37	11	1950358	1950358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:1950358G>A	uc001luu.3	+	7	303	c.91G>A	c.(91-93)GAG>AAG	p.E31K	TNNT3_uc001lun.2_Intron|TNNT3_uc001luw.3_Intron|TNNT3_uc001luo.3_Intron|TNNT3_uc001lup.3_Intron|TNNT3_uc001luq.3_Intron|TNNT3_uc001lur.2_Intron|TNNT3_uc010qxf.1_Intron|TNNT3_uc010qxg.1_Intron|TNNT3_uc001lut.1_RNA|TNNT3_uc001lus.1_Intron	NM_006757	NP_006748	P45378	TNNT3_HUMAN	troponin T3, skeletal, fast isoform 1	42					muscle filament sliding|regulation of ATPase activity|regulation of striated muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium-dependent protein binding|tropomyosin binding|troponin C binding|troponin I binding			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00253)|Lung(200;0.0333)|LUSC - Lung squamous cell carcinoma(625;0.0826)		AGACACCGCAGAGGAGGACGC	0.662													43	70					0	0	0.014410	0	0
CARS	833	broad.mit.edu	37	11	3062193	3062193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:3062193C>T	uc001lxh.2	-	3	213	c.139G>A	c.(139-141)GGG>AGG	p.G47R	CARS_uc001lxe.2_Missense_Mutation_p.G37R|CARS_uc001lxf.2_Missense_Mutation_p.G130R|CARS_uc001lxg.2_Missense_Mutation_p.G47R|CARS_uc010qxo.1_Missense_Mutation_p.G130R|CARS_uc010qxp.1_Missense_Mutation_p.G60R|uc001lxi.1_RNA	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	47					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ACCTTTTTCCCATCTTGAGGT	0.493			T	ALK	ALCL								19	58					0	0	0.007413	0	0
ZNF195	7748	broad.mit.edu	37	11	3380722	3380722	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:3380722A>C	uc001lxt.2	-	6	1694	c.1516T>G	c.(1516-1518)TTA>GTA	p.L506V	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Missense_Mutation_p.L483V|ZNF195_uc001lxs.2_Missense_Mutation_p.L434V|ZNF195_uc010qxr.1_Missense_Mutation_p.L487V|ZNF195_uc009ydz.2_Missense_Mutation_p.L461V|ZNF195_uc001lxu.2_Missense_Mutation_p.L438V	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	506	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGGTCTGATAACTGCTTAAAG	0.408													53	101					0	0	0.014410	0	0
OR52B4	143496	broad.mit.edu	37	11	4389234	4389234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:4389234G>A	uc010qye.1	-	1	292	c.292C>T	c.(292-294)CGT>TGT	p.R98C		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTGATGCAACGATCCAGGGAG	0.527													11	48					0	0	0.001855	0	0
OR52I1	390037	broad.mit.edu	37	11	4615877	4615877	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:4615877T>A	uc010qyi.1	+	1	609	c.609T>A	c.(607-609)AGT>AGA	p.S203R		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCTCTACAGTCTGATTGGTT	0.493													30	184					0	0	0.004878	0	0
OR51D1	390038	broad.mit.edu	37	11	4661336	4661336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:4661336G>A	uc010qyk.1	+	1	316	c.316G>A	c.(316-318)GAG>AAG	p.E106K		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	106	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCAGGAGATCGAGTTCAACAT	0.532													19	34					0	0	0.007413	0	0
OR51E1	143503	broad.mit.edu	37	11	4674057	4674057	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:4674057C>T	uc001lzi.3	+	2	445	c.301C>T	c.(301-303)CTG>TTG	p.L101L		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGATGCTTGTCTGCTACAGAT	0.507													22	38					0	0	0.012319	0	0
OR51S1	119692	broad.mit.edu	37	11	4870198	4870198	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:4870198A>T	uc010qyo.1	-	1	241	c.241T>A	c.(241-243)TTG>ATG	p.L81M		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	81	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.L81F(1)		skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCAGTGACCAATCCAATATCA	0.552													41	66					0	0	0.006230	0	0
OR51T1	401665	broad.mit.edu	37	11	4903607	4903607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:4903607C>T	uc010qyp.1	+	1	559	c.559C>T	c.(559-561)CCC>TCC	p.P187S		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTCTTACTTCCCCTTCTTGT	0.458													26	136					0	0	0.005443	0	0
OR51L1	119682	broad.mit.edu	37	11	5020453	5020453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5020453C>T	uc010qyu.1	+	1	241	c.241C>T	c.(241-243)CCC>TCC	p.P81S		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCTACACTTCCCACCATGCT	0.473													25	99					0	0	0.003330	0	0
OR52A5	390054	broad.mit.edu	37	11	5153532	5153532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5153532G>A	uc010qyx.1	-	1	341	c.341C>T	c.(340-342)TCG>TTG	p.S114L		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		AAGGATACCCGATTCAATTGC	0.443													14	23					0	0	0.001855	0	0
HBE1	3046	broad.mit.edu	37	11	5290736	5290736	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5290736T>C	uc001mal.1	-	2	516	c.263A>G	c.(262-264)AAG>AGG	p.K88R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Missense_Mutation_p.K88R	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	88					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCACTCAGCTTAGCAAAGGC	0.478													48	71					0	0	0.014410	0	0
OR51B5	282763	broad.mit.edu	37	11	5364678	5364678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5364678G>A	uc001map.1	-	1	77	c.77C>T	c.(76-78)TCC>TTC	p.S26F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.S26F	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAAAATACGGAAATCCAGTG	0.438													20	40					0	0	0.008871	0	0
OR51B5	282763	broad.mit.edu	37	11	5364700	5364701	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5364700_5364701CC>TT	uc001map.1	-	1	54_55	c.54_55GG>AA	c.(52-57)TTGGAG>TTAAAG	p.E19K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.E19K	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAGCTTCCTCCAAGCCTGGAA	0.426													20	33					0	0	0.004672	0	0
OR51I1	390063	broad.mit.edu	37	11	5462089	5462089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5462089G>A	uc010qze.1	-	1	656	c.656C>T	c.(655-657)TCC>TTC	p.S219F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAATGCGTAGGAAAGCAGGAT	0.473													13	16					0	0	0.013537	0	0
OR51I1	390063	broad.mit.edu	37	11	5462353	5462353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5462353G>A	uc010qze.1	-	1	392	c.392C>T	c.(391-393)CCA>CTA	p.P131L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATAGCGTAATGGATAACAAAT	0.483													27	50					0	0	0.005443	0	0
OR51I2	390064	broad.mit.edu	37	11	5474883	5474883	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5474883C>T	uc010qzf.1	+	1	165	c.165C>T	c.(163-165)CTC>CTT	p.L55L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	55	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCCCAGCCTCCATGAGCCCA	0.572													36	60					0	0	0.004878	0	0
OR51I2	390064	broad.mit.edu	37	11	5474973	5474973	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5474973C>T	uc010qzf.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCGAACCTTCTGCCTCAATG	0.488													29	121					0	0	0.012213	0	0
OR51I2	390064	broad.mit.edu	37	11	5475610	5475610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5475610G>A	uc010qzf.1	+	1	892	c.892G>A	c.(892-894)GAA>AAA	p.E298K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAAGACAAAGGAAATCCGCCG	0.438													58	113					0	0	0.014410	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537589	5537589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5537589G>A	uc001maz.3	-	1	368	c.83C>T	c.(82-84)TCA>TTA	p.S28L	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	28										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		AGTGGCACTTGAAGAGATATT	0.498													35	65					0	0	0.008740	0	0
OR52N2	390077	broad.mit.edu	37	11	5841972	5841972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5841972C>T	uc010qzp.1	+	1	407	c.407C>T	c.(406-408)ACC>ATC	p.T136I	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGCTATGCCACCATCCTTACC	0.547													32	47					0	0	0.003755	0	0
OR56A3	390083	broad.mit.edu	37	11	5968909	5968909	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5968909C>T	uc010qzt.1	+	1	333	c.333C>T	c.(331-333)TTC>TTT	p.F111F		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAATTGTTTCCTAGCCATGG	0.493													59	93					0	0	0.014410	0	0
OR56A5	390084	broad.mit.edu	37	11	5989627	5989627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:5989627G>A	uc010qzu.1	-	1	98	c.98C>T	c.(97-99)CCC>CTC	p.P33L		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	33	Extracellular (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GAGGCTGAGGGGCAGAGACAG	0.547													12	7					0	0	0.010729	0	0
OR56A4	120793	broad.mit.edu	37	11	6023726	6023726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6023726G>A	uc010qzv.1	-	1	653	c.653C>T	c.(652-654)TCT>TTT	p.S218F		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGCCTGGCAGAAAGCATGGG	0.463													18	17					0	0	0.007413	0	0
OR56B4	196335	broad.mit.edu	37	11	6129062	6129062	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6129062C>T	uc010qzx.1	+	1	54	c.54C>T	c.(52-54)TTC>TTT	p.F18F		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTCCCAGTTCATCCTGATGG	0.507													27	50					0	0	0.005443	0	0
OR52B2	255725	broad.mit.edu	37	11	6190816	6190816	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6190816G>A	uc010qzy.1	-	1	741	c.741C>T	c.(739-741)CTC>CTT	p.L247L		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGATGACACAGAGGTGGGAGC	0.488													30	43					0	0	0.008361	0	0
OR52B2	255725	broad.mit.edu	37	11	6191050	6191050	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6191050G>A	uc010qzy.1	-	1	507	c.507C>T	c.(505-507)CCC>CCT	p.P169P		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTAGGCAGAAGGGCAGCCGCT	0.502													15	39					0	0	0.002450	0	0
HPX	3263	broad.mit.edu	37	11	6462171	6462171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6462171G>A	uc001mdg.2	-	1	84	c.23C>T	c.(22-24)CCC>CTC	p.P8L	HPX_uc009yfc.2_RNA|HPX_uc010rai.1_Missense_Mutation_p.P8L	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	8					cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CAGTGCAACGGGTGCTCCCAG	0.577													4	14					0	0	0.000602	0	0
DCHS1	8642	broad.mit.edu	37	11	6651133	6651133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6651133G>A	uc001mem.1	-	11	5215	c.4805C>T	c.(4804-4806)TCC>TTC	p.S1602F		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1602	Cadherin 15.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCGCACCACGGACAGCGCTCC	0.652													9	44					0	0	0.006214	0	0
DCHS1	8642	broad.mit.edu	37	11	6655412	6655412	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6655412G>A	uc001mem.1	-	3	2333	c.1923C>T	c.(1921-1923)ACC>ACT	p.T641T		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	641	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCAGGGTCCGGGTTGTGCACA	0.592													35	69					0	0	0.003271	0	0
OR2D2	120776	broad.mit.edu	37	11	6912877	6912877	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6912877G>A	uc010rau.1	-	1	855	c.855C>T	c.(853-855)CCC>CCT	p.P285P		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TATAGATGAGGGGATTAAGCA	0.443													29	45					0	0	0.008361	0	0
ZNF215	7762	broad.mit.edu	37	11	6977310	6977310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:6977310C>T	uc001mey.2	+	7	1690	c.1102C>T	c.(1102-1104)CGA>TGA	p.R368*	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Nonsense_Mutation_p.R130*|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	368					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		TACAGATATTCGACACCAAAA	0.333													12	48					0	0	0.010729	0	0
ZNF214	7761	broad.mit.edu	37	11	7022720	7022720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7022720G>A	uc001mfa.2	-	3	497	c.194C>T	c.(193-195)TCC>TTC	p.S65F	ZNF214_uc010ray.1_Missense_Mutation_p.S65F|ZNF214_uc009yfh.1_Missense_Mutation_p.S65F	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TTGCCAGTAGGAAAAATTTTC	0.393													31	147					0	0	0.008361	0	0
NLRP14	338323	broad.mit.edu	37	11	7059824	7059824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7059824G>A	uc001mfb.1	+	2	330	c.7G>A	c.(7-9)GAT>AAT	p.D3N		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	3	DAPIN.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		CAAGATGGCAGATTCATCATC	0.358													34	69					0	0	0.004289	0	0
NLRP14	338323	broad.mit.edu	37	11	7070991	7070991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7070991G>A	uc001mfb.1	+	6	2536	c.2213G>A	c.(2212-2214)GGG>GAG	p.G738E		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	738	LRR 1.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GACCTAAAAGGGAGTGATATA	0.383													48	106					0	0	0.014410	0	0
OLFML1	283298	broad.mit.edu	37	11	7530740	7530740	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7530740T>A	uc001mfi.2	+	3	882	c.530T>A	c.(529-531)TTA>TAA	p.L177*	OLFML1_uc010raz.1_Nonsense_Mutation_p.L41*|OLFML1_uc010rba.1_Nonsense_Mutation_p.L177*	NM_198474	NP_940876	Q6UWY5	OLFL1_HUMAN	olfactomedin-like 1 precursor	177	Olfactomedin-like.					extracellular region				ovary(2)	2				Epithelial(150;6.96e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		AAGGTGTACTTATTAATTGGA	0.418													33	58					0	0	0.012213	0	0
OR5P2	120065	broad.mit.edu	37	11	7817686	7817686	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7817686C>T	uc001mfp.1	-	1	804	c.804G>A	c.(802-804)AAG>AAA	p.K268K		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	268	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAGACACCACCTTGTTCTGGT	0.488													22	59					0	0	0.010504	0	0
OR5P3	120066	broad.mit.edu	37	11	7846917	7846917	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7846917G>A	uc010rbg.1	-	1	603	c.603C>T	c.(601-603)ATC>ATT	p.I201I		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ATCCAGAAGAGATAGCTGGAA	0.423													21	36					0	0	0.010504	0	0
NLRP10	338322	broad.mit.edu	37	11	7981544	7981544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7981544G>A	uc001mfv.1	-	2	1632	c.1615C>T	c.(1615-1617)CCC>TCC	p.P539S		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	539							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCTAAACAGGGAGAAATTCTG	0.418													18	52					0	0	0.004990	0	0
NLRP10	338322	broad.mit.edu	37	11	7981739	7981739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7981739G>A	uc001mfv.1	-	2	1437	c.1420C>T	c.(1420-1422)CAT>TAT	p.H474Y		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	474	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GACATGGCATGAAAAAAGTCC	0.532													50	72					0	0	0.014410	0	0
NLRP10	338322	broad.mit.edu	37	11	7981952	7981952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:7981952C>T	uc001mfv.1	-	2	1224	c.1207G>A	c.(1207-1209)GAG>AAG	p.E403K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	403	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CGGGAAAGCTCGGAGCAGCCC	0.537													24	52					0	0	0.003330	0	0
STK33	65975	broad.mit.edu	37	11	8486369	8486369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:8486369C>T	uc001mgi.1	-	3	1259	c.340G>A	c.(340-342)GAA>AAA	p.E114K	STK33_uc001mgj.1_Missense_Mutation_p.E114K|STK33_uc001mgk.1_Missense_Mutation_p.E114K|STK33_uc010rbn.1_Missense_Mutation_p.E73K|STK33_uc001mgl.3_5'UTR|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	114						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GTATAGATTTCCTGGAGAAAA	0.353													30	35					0	0	0.009535	0	0
LYVE1	10894	broad.mit.edu	37	11	10585563	10585563	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:10585563C>T	uc001miv.2	-	3	607	c.321G>A	c.(319-321)GGG>GGA	p.G107G	uc001miu.2_Intron|LYVE1_uc010rca.1_Intron	NM_006691	NP_006682	Q9Y5Y7	LYVE1_HUMAN	lymphatic vessel endothelial hyaluronan receptor	107	Link.|Extracellular (Potential).				anatomical structure morphogenesis|cell-matrix adhesion|cellular component movement|response to wounding|transport	integral to plasma membrane|membrane fraction				central_nervous_system(1)|skin(1)	2				all cancers(16;7.22e-08)|Epithelial(150;1.03e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0609)		CCCCATTTTTCCCACACTTGG	0.463													29	27					0	0	0.007291	0	0
CTR9	9646	broad.mit.edu	37	11	10773005	10773005	+	Splice_Site	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:10773005G>T	uc001mja.2	+	1	194	c.45_splice	c.e1+1	p.E15_splice		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1						histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		CACTGACGAGGTAAGTGTCGT	0.622													14	17					1.5739e-10	1.73586e-10	0.004007	1	0
DKK3	27122	broad.mit.edu	37	11	11986121	11986121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:11986121C>T	uc001mju.2	-	7	1000	c.943G>A	c.(943-945)GAG>AAG	p.E315K	DKK3_uc010rcf.1_Missense_Mutation_p.E287K|DKK3_uc001mjv.2_Missense_Mutation_p.E315K|DKK3_uc001mjw.2_Missense_Mutation_p.E315K|DKK3_uc010rcg.1_Missense_Mutation_p.E329K	NM_001018057	NP_001018067	Q9UBP4	DKK3_HUMAN	dickkopf homolog 3 precursor	315					adrenal gland development|anatomical structure morphogenesis|negative regulation of aldosterone biosynthetic process|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cortisol biosynthetic process|negative regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	extracellular space				breast(1)	1				Epithelial(150;0.000502)		CGCACCTCCTCCATGAAGCTG	0.637													47	51					0	0	0.010771	0	0
MICAL2	9645	broad.mit.edu	37	11	12270770	12270770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:12270770C>T	uc001mjz.2	+	22	3112	c.2824C>T	c.(2824-2826)CAT>TAT	p.H942Y	MICAL2_uc010rch.1_Missense_Mutation_p.H752Y|MICAL2_uc001mka.2_Missense_Mutation_p.H942Y|MICAL2_uc010rci.1_Intron|MICAL2_uc001mkb.2_Missense_Mutation_p.H752Y|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Missense_Mutation_p.H154Y|MICAL2_uc001mkf.2_Intron	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	942						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		tcatcccagccatttgagaac	0.109													21	25					0	0	0.012319	0	0
TEAD1	7003	broad.mit.edu	37	11	12901314	12901314	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:12901314C>T	uc001mkj.3	+	6	1010	c.345C>T	c.(343-345)ATC>ATT	p.I115I	TEAD1_uc001mkk.3_Silent_p.I34I|TEAD1_uc009ygl.2_Silent_p.I9I	NM_021961	NP_068780	P28347	TEAD1_HUMAN	TEA domain family member 1	130					hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0				Epithelial(150;0.00223)|BRCA - Breast invasive adenocarcinoma(625;0.236)		CAGCCCAGATCGTCTCGGCCA	0.567													34	56					0	0	0.013726	0	0
ARNTL	406	broad.mit.edu	37	11	13407317	13407317	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:13407317T>C	uc001mkr.2	+	19	2107	c.1699T>C	c.(1699-1701)TCT>CCT	p.S567P	ARNTL_uc001mko.2_Missense_Mutation_p.S523P|ARNTL_uc001mkp.2_Missense_Mutation_p.S566P|ARNTL_uc001mkq.2_Missense_Mutation_p.S566P|ARNTL_uc001mks.2_Missense_Mutation_p.S524P|ARNTL_uc001mkt.2_Missense_Mutation_p.S567P|ARNTL_uc001mku.2_RNA|ARNTL_uc001mkw.2_Missense_Mutation_p.S524P|ARNTL_uc001mkx.2_Missense_Mutation_p.S565P|ARNTL_uc001mky.2_Missense_Mutation_p.S105P	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	567					circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		TTATCCATATTCTGATAGTTC	0.398													26	50					0	0	0.004656	0	0
INSC	387755	broad.mit.edu	37	11	15170714	15170714	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:15170714G>A	uc001mly.2	+	2	181	c.135G>A	c.(133-135)GGG>GGA	p.G45G	INSC_uc001mlz.2_5'UTR|INSC_uc001mma.2_5'UTR|INSC_uc010rcs.1_5'UTR|INSC_uc001mmb.2_5'UTR|INSC_uc001mmc.2_5'UTR	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	45					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						TGCAGATTGGGATCAACATGA	0.582													9	40					0	0	0.006214	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16838383	16838383	+	Silent	SNP	C	T	T	rs142792914		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:16838383C>T	uc001mmo.2	-	11	1845	c.1830G>A	c.(1828-1830)GGG>GGA	p.G610G	PLEKHA7_uc010rcu.1_Silent_p.G610G|PLEKHA7_uc010rcv.1_Silent_p.G184G|PLEKHA7_uc001mmn.2_Silent_p.G318G	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	610	Interaction with CTNND1.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TTGGAGAATCCCCCAGCGAGA	0.657													7	38					0	0	0.001984	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16838578	16838578	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:16838578G>A	uc001mmo.2	-	11	1650	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	PLEKHA7_uc010rcu.1_Silent_p.S545S|PLEKHA7_uc010rcv.1_Silent_p.S119S|PLEKHA7_uc001mmn.2_Silent_p.S253S	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	545	Interaction with CTNND1.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TGAACTCTGGGGAGCCAAGGC	0.697													25	24					0	0	0.003954	0	0
IGSF22	283284	broad.mit.edu	37	11	18739491	18739491	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:18739491C>T	uc009yht.2	-	9	1150	c.960G>A	c.(958-960)GAG>GAA	p.E320E	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	320	Ig-like 2.									ovary(4)|large_intestine(2)|kidney(1)	7						GCACTGTGAGCTCTGCACTCA	0.547													14	70					0	0	0.004007	0	0
PTPN5	84867	broad.mit.edu	37	11	18754142	18754142	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:18754142G>A	uc001mpd.2	-	12	1757	c.1326C>T	c.(1324-1326)CTC>CTT	p.L442L	PTPN5_uc001mpb.2_Silent_p.L410L|PTPN5_uc001mpc.2_Silent_p.L442L|PTPN5_uc001mpe.2_Silent_p.L410L|PTPN5_uc010rdj.1_Silent_p.L386L|PTPN5_uc001mpf.2_Silent_p.L418L|PTPN5_uc010rdk.1_Silent_p.L387L	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	442	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						GCCTCACCTTGAGGGAGATGA	0.587											OREG0020824	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	117					0	0	0.007291	0	0
PTPN5	84867	broad.mit.edu	37	11	18754872	18754872	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:18754872G>A	uc001mpd.2	-	11	1559	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I	PTPN5_uc001mpb.2_Silent_p.I344I|PTPN5_uc001mpc.2_Silent_p.I376I|PTPN5_uc001mpe.2_Silent_p.I344I|PTPN5_uc010rdj.1_Silent_p.I320I|PTPN5_uc001mpf.2_Silent_p.I352I|PTPN5_uc010rdk.1_Silent_p.I321I	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	376	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						CCGTGCTGACGATGGGTCCCT	0.617													26	55					0	0	0.006320	0	0
PRMT3	10196	broad.mit.edu	37	11	20424497	20424497	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:20424497C>T	uc001mqb.2	+	8	955	c.738C>T	c.(736-738)TTC>TTT	p.F246F	PRMT3_uc001mqc.2_Silent_p.F169F|PRMT3_uc010rdn.1_Silent_p.F184F	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	246							zinc ion binding				0						ACCGAGATTTCATATACCAAA	0.353													22	85					0	0	0.003954	0	0
SLC6A5	9152	broad.mit.edu	37	11	20649547	20649547	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:20649547C>T	uc001mqd.2	+	9	1690	c.1417C>T	c.(1417-1419)CAG>TAG	p.Q473*	SLC6A5_uc009yic.2_Nonsense_Mutation_p.Q238*	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	473					synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TGCTGCCACTCAGATTTTCTT	0.493													9	49					0	0	0.006214	0	0
SLC6A5	9152	broad.mit.edu	37	11	20673986	20673986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:20673986C>T	uc001mqd.2	+	15	2495	c.2222C>T	c.(2221-2223)CCT>CTT	p.P741L	SLC6A5_uc009yic.2_Missense_Mutation_p.P506L	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	741	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CATCTGGCCCCTGGAAGATTT	0.443													39	69					0	0	0.010771	0	0
ANO5	203859	broad.mit.edu	37	11	22248924	22248924	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:22248924T>G	uc001mqi.2	+	7	757	c.440T>G	c.(439-441)TTG>TGG	p.L147W	ANO5_uc001mqj.2_Missense_Mutation_p.L146W	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	147	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						GCTGAAGTCTTGGGAATCAAA	0.433													14	60					0	0	0.001855	0	0
LUZP2	338645	broad.mit.edu	37	11	24753697	24753697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:24753697G>A	uc001mqs.2	+	3	448	c.214G>A	c.(214-216)GAT>AAT	p.D72N	LUZP2_uc009yif.2_5'UTR|LUZP2_uc009yig.2_Missense_Mutation_p.D72N	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	72	Potential.					extracellular region				ovary(1)|skin(1)	2						TGCCAAAACTGATGTTCAGAA	0.338													4	18					0	0	0.001984	0	0
MUC15	143662	broad.mit.edu	37	11	26582726	26582726	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:26582726C>T	uc001mqx.2	-	4	1157	c.891G>A	c.(889-891)GGG>GGA	p.G297G	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Silent_p.G324G|MUC15_uc001mqy.2_Silent_p.G274G	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	297	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCTAGAATTCCCAAAACTCA	0.383													18	21					0	0	0.007413	0	0
MUC15	143662	broad.mit.edu	37	11	26582728	26582728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:26582728C>T	uc001mqx.2	-	4	1155	c.889G>A	c.(889-891)GGG>AGG	p.G297R	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.G324R|MUC15_uc001mqy.2_Missense_Mutation_p.G274R	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	297	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTAGAATTCCCAAAACTCACA	0.378													9	29					0	0	0.006214	0	0
SLC5A12	159963	broad.mit.edu	37	11	26734223	26734223	+	Missense_Mutation	SNP	G	A	A	rs145373937		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:26734223G>A	uc001mra.2	-	2	683	c.370C>T	c.(370-372)CGC>TGC	p.R124C	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.R124C	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	124	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity	p.R124C(1)		ovary(1)|skin(1)	2						GCAGCATAGCGAACTGGTTTG	0.398													92	126					0	0	0.014410	0	0
WT1	7490	broad.mit.edu	37	11	32456300	32456300	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:32456300T>A	uc001mtn.1	-	1	788	c.592A>T	c.(592-594)AAC>TAC	p.N198Y	WT1_uc001mto.1_Missense_Mutation_p.N198Y|WT1_uc001mtp.1_Missense_Mutation_p.N198Y|WT1_uc001mtq.1_Missense_Mutation_p.N198Y|WT1_uc009yjs.1_RNA|WIT1_uc010rec.1_5'Flank|WIT1_uc010red.1_5'Flank|WIT1_uc010ree.1_5'Flank	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	130					adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding	p.P198fs*20(2)	EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			TAGGGCGCGTTAGGAAACATC	0.692			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				8	20					0	0	0.004482	0	0
WIT1	51352	broad.mit.edu	37	11	32460385	32460385	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:32460385G>A	uc010rec.1	+	2		c.1103G>A			WIT1_uc010red.1_RNA|WIT1_uc010ree.1_RNA	NR_023920				full-length cDNA clone CS0DC024YP12 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0	Breast(20;0.247)					cgtccagttggaggttttacc	0.249													13	10					0	0	0.013537	0	0
LMO2	4005	broad.mit.edu	37	11	33886333	33886333	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:33886333G>A	uc001mve.2	-	2	511	c.72C>T	c.(70-72)CCC>CCT	p.P24P	LMO2_uc001mvc.2_Silent_p.P17P|LMO2_uc001mvd.2_Silent_p.P17P|LMO2_uc010rel.1_Silent_p.P24P|LMO2_uc010rem.1_Silent_p.P93P	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	24					multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						GCAGGGATGGGGGGATCTGCA	0.617			T	TRD@	T-ALL								16	46					0	0	0.010504	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34112119	34112119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:34112119C>T	uc001mvh.1	+	14	1637	c.1448C>T	c.(1447-1449)TCC>TTC	p.S483F	CAPRIN1_uc001mvg.2_Missense_Mutation_p.S483F|CAPRIN1_uc001mvi.2_Missense_Mutation_p.S483F|CAPRIN1_uc001mvj.1_Missense_Mutation_p.S402F	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	483					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				GCATCATCATCCCTTCCTGCT	0.413													13	36					0	0	0.013537	0	0
NAT10	55226	broad.mit.edu	37	11	34149087	34149087	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:34149087C>T	uc001mvk.2	+	12	1429	c.1185C>T	c.(1183-1185)CTC>CTT	p.L395L	NAT10_uc010ren.1_Silent_p.L323L	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	395						nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				CCATCCCCCTCCCCTTGGTGA	0.522													21	99					0	0	0.002780	0	0
NAT10	55226	broad.mit.edu	37	11	34161016	34161016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:34161016G>A	uc001mvk.2	+	23	2637	c.2393G>A	c.(2392-2394)AGG>AAG	p.R798K	NAT10_uc010ren.1_Missense_Mutation_p.R726K	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	798	Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				ATTCAGAACAGGAACATGGGG	0.592													31	111					0	0	0.010818	0	0
CAT	847	broad.mit.edu	37	11	34470872	34470873	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:34470872_34470873AG>TA	uc001mvm.2	+	2	283_284	c.200_201AG>TA	c.(199-201)GAG>GTA	p.E67V	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	67					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	TTTGACCGAGAGAGAATTCCTG	0.436													29	64					0	0	0.004672	0	0
CD44	960	broad.mit.edu	37	11	35198190	35198190	+	Missense_Mutation	SNP	C	T	T	rs121909545		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:35198190C>T	uc001mvu.2	+	2	570	c.136C>T	c.(136-138)CGG>TGG	p.R46W	CD44_uc001mvv.2_Missense_Mutation_p.R46W|CD44_uc001mvw.2_Missense_Mutation_p.R46W|CD44_uc001mvx.2_Missense_Mutation_p.R46W|CD44_uc001mvy.2_Missense_Mutation_p.R46W|CD44_uc001mwc.3_Missense_Mutation_p.R46W|CD44_uc010rer.1_Missense_Mutation_p.R46W|CD44_uc009ykh.2_RNA	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	46	Extracellular (Potential).|Link.		R -> P (in In(A) antigen).		cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	CAGCATCTCTCGGACGGAGGC	0.478													10	28					0	0	0.006214	0	0
TRAF6	7189	broad.mit.edu	37	11	36514136	36514136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:36514136G>A	uc001mwr.1	-	7	1061	c.721C>T	c.(721-723)CCA>TCA	p.P241S	TRAF6_uc001mws.1_Missense_Mutation_p.P241S	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	241	Interaction with TAX1BP1.|TRAF-type 2.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				AATGTGCATGGAATTGGGGCT	0.308													19	99					0	0	0.010504	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136877	40136877	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:40136877C>T	uc001mxa.1	-	2	2930	c.966G>A	c.(964-966)TCG>TCA	p.S322S	LRRC4C_uc001mxc.1_Silent_p.S318S|LRRC4C_uc001mxd.1_Silent_p.S318S|LRRC4C_uc001mxb.1_Silent_p.S318S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	322	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				AAGCTGTGTTCGAGGGGGCCA	0.493													18	16					0	0	0.004990	0	0
CREB3L1	90993	broad.mit.edu	37	11	46341910	46341910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:46341910G>A	uc001ncf.2	+	11	1789	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	CREB3L1_uc001ncg.2_Missense_Mutation_p.E86K	NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	452	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		AGATGGCTGGGAAATCAACCC	0.652			T	FUS	myxofibrosarcoma								4	12					0	0	0.001168	0	0
PTPRJ	5795	broad.mit.edu	37	11	48149502	48149502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:48149502C>T	uc001ngp.3	+	7	1619	c.1264C>T	c.(1264-1266)CCC>TCC	p.P422S	PTPRJ_uc001ngo.3_Missense_Mutation_p.P422S	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	422	Extracellular (Potential).|Fibronectin type-III 4.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						CGCTGTCATCCCCGGACTCCG	0.552													34	59					0	0	0.003755	0	0
LOC440040	440040	broad.mit.edu	37	11	49598204	49598204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:49598204C>T	uc010rhy.1	+	2	795	c.317C>T	c.(316-318)TCC>TTC	p.S106F	LOC440040_uc009ymb.2_Missense_Mutation_p.S106F	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TCCTCCTCTTCCTTCTGCTCC	0.512													11	14					0	0	0.001855	0	0
OR4C13	283092	broad.mit.edu	37	11	49974126	49974126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:49974126C>T	uc010rhz.1	+	1	152	c.152C>T	c.(151-153)CCA>CTA	p.P51L		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ACTGCCAGCCCATCACTGAGA	0.428													47	149					0	0	0.014410	0	0
OR4C12	283093	broad.mit.edu	37	11	50003782	50003782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:50003782C>T	uc010ria.1	-	1	256	c.256G>A	c.(256-258)GAG>AAG	p.E86K		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ATTTTCTTCTCTTGAAAGGAA	0.433													40	64					0	0	0.010771	0	0
OR4A15	81328	broad.mit.edu	37	11	55135551	55135551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55135551G>A	uc010rif.1	+	1	192	c.192G>A	c.(190-192)ATG>ATA	p.M64I		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	64	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TAATCTACATGGTGACGATAA	0.418													27	32					0	0	0.004656	0	0
OR4C16	219428	broad.mit.edu	37	11	55340347	55340347	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55340347C>T	uc010rih.1	+	1	744	c.744C>T	c.(742-744)TTC>TTT	p.F248F		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TCATCTTGTTCTTTGGACCTT	0.403													31	28					0	0	0.012213	0	0
OR5D16	390144	broad.mit.edu	37	11	55606440	55606440	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55606440G>A	uc010rio.1	+	1	213	c.213G>A	c.(211-213)GTG>GTA	p.V71V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TCTCCTTTGTGGATTTCTGCT	0.413													37	117					0	0	0.006230	0	0
OR5F1	338674	broad.mit.edu	37	11	55761697	55761697	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55761697G>A	uc010riv.1	-	1	405	c.405C>T	c.(403-405)ATC>ATT	p.I135I		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TCCTGGACATGATCAAGGAGT	0.507													19	28					0	0	0.007413	0	0
OR5AS1	219447	broad.mit.edu	37	11	55797987	55797987	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55797987C>T	uc010riw.1	+	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TCTTGGTATTCCTTCTGGTAT	0.328													6	37					0	0	0.001984	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798846	55798846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55798846C>T	uc010riw.1	+	1	952	c.952C>T	c.(952-954)CGT>TGT	p.R318C		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					GTATTTAAATCGTTTAAGAAT	0.264													36	52					0	0	0.004878	0	0
OR8H3	390152	broad.mit.edu	37	11	55889898	55889898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55889898G>A	uc001nii.1	+	1	50	c.50G>A	c.(49-51)GGA>GAA	p.G17E		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					ATCCTTACGGGACTGTCAGAC	0.398													41	56					0	0	0.007835	0	0
OR8H3	390152	broad.mit.edu	37	11	55890323	55890323	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:55890323A>C	uc001nii.1	+	1	475	c.475A>C	c.(475-477)AAT>CAT	p.N159H		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					CTCCTTTGTCAATGTGGTTTC	0.443													61	88					0	0	0.014410	0	0
OR8H1	219469	broad.mit.edu	37	11	56057983	56057983	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56057983G>A	uc010rje.1	-	1	556	c.556C>T	c.(556-558)CTG>TTG	p.L186L		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					ATGCAGGACAGAGCTAAAATT	0.428													9	47					0	0	0.008291	0	0
OR8K3	219473	broad.mit.edu	37	11	56086403	56086403	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56086403G>A	uc010rjf.1	+	1	621	c.621G>A	c.(619-621)TTG>TTA	p.L207L		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CTATTGATTTGATTTCATCTC	0.363													15	37					0	0	0.003163	0	0
OR8K3	219473	broad.mit.edu	37	11	56086643	56086643	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56086643G>A	uc010rjf.1	+	1	861	c.861G>A	c.(859-861)TTG>TTA	p.L287L		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TGAATCCCTTGATCTATAGTT	0.353													11	31					0	0	0.013537	0	0
OR5R1	219479	broad.mit.edu	37	11	56184863	56184863	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56184863G>A	uc010rji.1	-	1	846	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTAACATGGGGATCACCACTG	0.383													37	46					0	0	0.005524	0	0
OR5M3	219482	broad.mit.edu	37	11	56237350	56237350	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56237350G>A	uc010rjk.1	-	1	624	c.624C>T	c.(622-624)TCC>TCT	p.S208S		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTACAGTCAGGGAATATGTGA	0.443													41	46					0	0	0.014410	0	0
OR5M11	219487	broad.mit.edu	37	11	56310287	56310287	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56310287G>A	uc010rjl.1	-	1	447	c.447C>T	c.(445-447)GTC>GTT	p.V149V		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGAAGCCATAGACATAGGGAA	0.527													7	13					0	0	0.001984	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409859	56409859	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56409859G>A	uc001njb.1	-	1	57	c.57C>T	c.(55-57)CTC>CTT	p.L19L		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GTCCTAAGAGGAGAAATTCTG	0.398													9	42					0	0	0.010729	0	0
OR9G4	283189	broad.mit.edu	37	11	56510593	56510593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56510593G>A	uc010rjo.1	-	1	695	c.695C>T	c.(694-696)TCC>TTC	p.S232F		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	232	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GTTGACATAGGAAATCAGGAT	0.483													42	50					0	0	0.010771	0	0
OR9G4	283189	broad.mit.edu	37	11	56510657	56510657	+	Missense_Mutation	SNP	C	T	T	rs147669235		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56510657C>T	uc010rjo.1	-	1	631	c.631G>A	c.(631-633)GAA>AAA	p.E211K		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	211	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AGGACTTTTTCGTAGACCCTG	0.438													12	34					0	0	0.013537	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756815	56756815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56756815C>T	uc010rjp.1	+	1	427	c.427C>T	c.(427-429)CGT>TGT	p.R143C		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AGTCTGCATCCGTTTGGTAGC	0.443													37	49					0	0	0.004878	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756910	56756910	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56756910C>T	uc010rjp.1	+	1	522	c.522C>T	c.(520-522)ATC>ATT	p.I174I		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						CCAATAGCATCAATCACTTTT	0.413													82	97					0	0	0.014410	0	0
LRRC55	219527	broad.mit.edu	37	11	56954940	56954940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:56954940G>A	uc001njl.1	+	2	1159	c.1012G>A	c.(1012-1014)GAG>AAG	p.E338K	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	308	Poly-Glu.					integral to membrane					0						GGCCAGTGAAGAGGAAGAGAT	0.607													12	28					0	0	0.013537	0	0
PRG3	10394	broad.mit.edu	37	11	57147044	57147044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:57147044C>T	uc001njv.1	-	3	408	c.298G>A	c.(298-300)GAA>AAA	p.E100K		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	100					basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						CCCTGCACTTCAACAATGTCT	0.517													32	104					0	0	0.008361	0	0
SMTNL1	219537	broad.mit.edu	37	11	57311208	57311208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:57311208G>A	uc009ymh.1	+	3	898	c.898G>A	c.(898-900)GAG>AAG	p.E300K		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	282										ovary(1)	1						CCCCACTGGGGAGGGGCACAA	0.647													4	7					0	0	0.009096	0	0
OR5B2	390190	broad.mit.edu	37	11	58190091	58190091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:58190091G>A	uc010rkg.1	-	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAACAAGTAGGAGATAAAGAT	0.403													14	18					0	0	0.002450	0	0
OR5B21	219968	broad.mit.edu	37	11	58275543	58275543	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:58275543G>A	uc010rki.1	-	1	36	c.36C>T	c.(34-36)CTC>CTT	p.L12L		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TTAATCCCAAGAGGATAAACT	0.438													17	38					0	0	0.007413	0	0
LPXN	9404	broad.mit.edu	37	11	58338113	58338113	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:58338113G>A	uc001nmw.2	-	2	232	c.87C>T	c.(85-87)CCC>CCT	p.P29P	LPXN_uc009ymp.2_5'UTR|LPXN_uc010rkj.1_Silent_p.P34P|LPXN_uc010rkk.1_Missense_Mutation_p.P25L	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2	29					cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				GCTGATCCAGGGGAAGAGGAG	0.443													17	46					0	0	0.004990	0	0
OR5A1	219982	broad.mit.edu	37	11	59210722	59210723	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:59210722_59210723GG>AA	uc001nnx.1	+	1	81_82	c.81_82GG>AA	c.(79-84)CAGGCC>CAAACC	p.A28T		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	28	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.A28A(1)		ovary(1)|central_nervous_system(1)	2						CAGAACTCCAGGCCCTCCTCTT	0.54													57	52					0	0	0.004672	0	0
OR4D11	219986	broad.mit.edu	37	11	59271968	59271968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:59271968C>T	uc001noa.1	+	1	920	c.920C>T	c.(919-921)CCT>CTT	p.P307L		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGACTCGTGCCTTCTGAAAGG	0.294													11	21					0	0	0.010729	0	0
OR4D9	390199	broad.mit.edu	37	11	59283314	59283314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:59283314G>A	uc010rkv.1	+	1	929	c.929G>A	c.(928-930)AGG>AAG	p.R310K		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAATCAGAAAGGATTTTAATT	0.378													10	27					0	0	0.008291	0	0
OSBP	5007	broad.mit.edu	37	11	59345628	59345628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:59345628G>A	uc001noc.1	-	12	2534	c.2054C>T	c.(2053-2055)CCT>CTT	p.P685L	OSBP_uc009ymr.1_RNA	NM_002556	NP_002547	P22059	OSBP1_HUMAN	oxysterol binding protein	685					lipid transport	Golgi membrane	oxysterol binding			large_intestine(1)	1		all_epithelial(135;0.000236)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		TCACGGTAAAGGATTCCTTTT	0.478													22	63					0	0	0.003330	0	0
PATL1	219988	broad.mit.edu	37	11	59423511	59423511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:59423511G>A	uc001noe.3	-	7	874	c.731C>T	c.(730-732)TCC>TTC	p.S244F	PATL1_uc009yms.1_Intron|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	244	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						ACCCAGGAGGGAAGAGTTCTA	0.423													4	12					0	0	0.000602	0	0
MS4A7	58475	broad.mit.edu	37	11	60150751	60150751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:60150751C>T	uc001npe.2	+	2	282	c.137C>T	c.(136-138)ACC>ATC	p.T46I	MS4A7_uc001npf.2_Missense_Mutation_p.T46I|MS4A7_uc001npg.2_Missense_Mutation_p.T46I|MS4A7_uc001nph.2_Missense_Mutation_p.T46I|MS4A14_uc001npi.2_Intron|MS4A7_uc009ymx.1_Missense_Mutation_p.T46I	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	46	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						ACAGAAACCACCGTTCTTGGG	0.438													27	37					0	0	0.007291	0	0
MS4A14	84689	broad.mit.edu	37	11	60183946	60183946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:60183946C>T	uc001npj.2	+	5	2070	c.1505C>T	c.(1504-1506)TCT>TTT	p.S502F	MS4A14_uc001npi.2_Missense_Mutation_p.S390F|MS4A14_uc001npn.2_Missense_Mutation_p.S240F|MS4A14_uc001npk.2_Missense_Mutation_p.S485F|MS4A14_uc001npl.2_Missense_Mutation_p.S240F|MS4A14_uc001npm.2_Missense_Mutation_p.S240F	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	502	Gln-rich.					integral to membrane	receptor activity			breast(1)	1						AGGAGACATTCTTTAGACGTG	0.433													18	67					0	0	0.004990	0	0
SLC15A3	51296	broad.mit.edu	37	11	60714282	60714282	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:60714282G>A	uc001nqn.2	-	2	804	c.570C>T	c.(568-570)CTC>CTT	p.L190L	SLC15A3_uc001nqo.2_Silent_p.L190L	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	190					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						CGTCGCGGCCGAGATCCATCA	0.587													51	59					0	0	0.014410	0	0
AHNAK	79026	broad.mit.edu	37	11	62287735	62287735	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:62287735G>A	uc001ntl.2	-	5	14454	c.14154C>T	c.(14152-14154)GCC>GCT	p.A4718A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4718					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				AGATCTTGGGGGCTTTGATGC	0.483													50	160					0	0	0.014410	0	0
INTS5	80789	broad.mit.edu	37	11	62415653	62415653	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:62415653G>A	uc001nud.2	-	2	1952	c.1899C>T	c.(1897-1899)CCC>CCT	p.P633P	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	633					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						CAGAAGGAAAGGGACAAATGG	0.597													12	43					0	0	0.013537	0	0
SLC22A12	116085	broad.mit.edu	37	11	64367185	64367185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:64367185G>A	uc001oam.1	+	7	1855	c.1108G>A	c.(1108-1110)GAC>AAC	p.D370N	SLC22A12_uc001oal.1_Missense_Mutation_p.D149N|SLC22A12_uc009yps.1_Missense_Mutation_p.D336N|SLC22A12_uc001oan.1_Missense_Mutation_p.D262N|SLC22A12_uc009ypt.2_Missense_Mutation_p.D188N	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	370	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						CCTGGCCCTGGACCTGCAGGC	0.423													9	36					0	0	0.006214	0	0
EHD1	10938	broad.mit.edu	37	11	64622204	64622204	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:64622204G>A	uc001obu.1	-	5	1461	c.1206C>T	c.(1204-1206)TCC>TCT	p.S402S	EHD1_uc001obt.1_Silent_p.S85S|EHD1_uc001obv.1_Silent_p.S402S|EHD1_uc010rnq.1_Silent_p.S416S	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	402					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						AAGGCATCAGGGACTCCTCCT	0.672													16	136					0	0	0.004007	0	0
ATG2A	23130	broad.mit.edu	37	11	64668367	64668368	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:64668367_64668368GT>AA	uc001obx.2	-	30	4431_4432	c.4316_4317AC>TT	c.(4315-4317)CAC>CTT	p.H1439L	ATG2A_uc001obw.2_Missense_Mutation_p.H204L	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1439							protein binding			ovary(1)|central_nervous_system(1)	2						TGTGGCCGGGGTGGGGGCCAAA	0.386													3	4					0	0	0.004672	0	0
PPP2R5B	5526	broad.mit.edu	37	11	64695292	64695292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:64695292C>T	uc001oby.2	+	4	1000	c.415C>T	c.(415-417)CGG>TGG	p.R139W	PPP2R5B_uc001obz.2_Missense_Mutation_p.R139W	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	139					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						GAATATCTTCCGGACTCTGCC	0.502													21	62					0	0	0.014323	0	0
POLA2	23649	broad.mit.edu	37	11	65049962	65049962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:65049962C>T	uc001odj.2	+	10	1318	c.976C>T	c.(976-978)CCA>TCA	p.P326S	POLA2_uc010rod.1_Missense_Mutation_p.P118S|POLA2_uc001odk.2_Missense_Mutation_p.P23S	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	326					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	TGTGCCACTTCCATTTTATCA	0.502													26	65					0	0	0.008361	0	0
TIGD3	220359	broad.mit.edu	37	11	65124003	65124003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:65124003C>T	uc001odo.3	+	2	887	c.724C>T	c.(724-726)CCC>TCC	p.P242S		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	242	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CCTGGGCATCCCCTGGTTAGA	0.662													56	61					0	0	0.014410	0	0
FRMD8	83786	broad.mit.edu	37	11	65168246	65168246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:65168246C>T	uc001odu.3	+	9	1171	c.979C>T	c.(979-981)CCC>TCC	p.P327S	FRMD8_uc009yqj.2_Missense_Mutation_p.P271S|FRMD8_uc010rof.1_Missense_Mutation_p.P293S	NM_031904	NP_114110	Q9BZ67	FRMD8_HUMAN	FERM domain containing 8	327	FERM.					cytoskeleton	binding			lung(1)|pancreas(1)	2						CCACACCTCCCCCGAGGAGGA	0.637													25	20					0	0	0.003954	0	0
EFEMP2	30008	broad.mit.edu	37	11	65637595	65637595	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:65637595C>G	uc001ofy.3	-	6	798	c.604G>C	c.(604-606)GTT>CTT	p.V202L	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.V202L	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	202	EGF-like 3; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		GCCTCACCAACACAGGAGCGG	0.682													15	32					0	0	0.002450	0	0
SF3B2	10992	broad.mit.edu	37	11	65819988	65819988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:65819988G>A	uc001ogy.1	+	1	173	c.133G>A	c.(133-135)GGT>AGT	p.G45S	SF3B2_uc001ogx.1_Missense_Mutation_p.G45S	NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	45	SAP.				interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						TCCGATCCAGGGTGAGGAACA	0.677													21	22					0	0	0.008871	0	0
PACS1	55690	broad.mit.edu	37	11	65988193	65988193	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:65988193A>G	uc001oha.1	+	9	1264	c.1130A>G	c.(1129-1131)AAC>AGC	p.N377S		NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	377	Potential.				interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						GAGATGTACAACCCCAGCGAC	0.582													10	43					0	0	0.010729	0	0
PACS1	55690	broad.mit.edu	37	11	66006656	66006656	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:66006656C>T	uc001oha.1	+	21	2471	c.2337C>T	c.(2335-2337)TCC>TCT	p.S779S	PACS1_uc010rou.1_Silent_p.S315S	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	779					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						CTGTGCCCTCCACATCACCAC	0.617													23	30					0	0	0.006320	0	0
CCS	9973	broad.mit.edu	37	11	66373037	66373037	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:66373037C>T	uc001oir.2	+	7	688	c.645C>T	c.(643-645)TCC>TCT	p.S215S	CCS_uc001ois.2_RNA	NM_005125	NP_005116	O14618	CCS_HUMAN	copper chaperone for superoxide dismutase	215	Superoxide dismutase-like.				intracellular copper ion transport|oxidation-reduction process|removal of superoxide radicals	cytosol|mitochondrial inner membrane|nucleus|soluble fraction	copper ion transmembrane transporter activity|protein binding|superoxide dismutase copper chaperone activity|zinc ion binding				0						ATCCCTTATCCAAGATCACAG	0.602													38	46					0	0	0.014410	0	0
ADRBK1	156	broad.mit.edu	37	11	67052417	67052417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:67052417C>T	uc009yrn.1	+	19	2020	c.1754C>T	c.(1753-1755)CCC>CTC	p.P585L	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	585	PH.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	TACCTGTTCCCCAACCGCCTC	0.687													8	10					0	0	0.008291	0	0
ADRBK1	156	broad.mit.edu	37	11	67052452	67052452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:67052452C>T	uc009yrn.1	+	19	2055	c.1789C>T	c.(1789-1791)CCG>TCG	p.P597S	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	597	PH.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	GGGCGAGGCCCCGGTAAGGAG	0.706													8	15					0	0	0.003080	0	0
FGF3	2248	broad.mit.edu	37	11	69625419	69625419	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:69625419C>G	uc001oph.2	-	3	865	c.374G>C	c.(373-375)GGC>GCC	p.G125A		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	125					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			CGTATTATAGCCCAGCTCGTG	0.632													21	33					0	0	0.003330	0	0
FGF3	2248	broad.mit.edu	37	11	69625426	69625426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:69625426C>T	uc001oph.2	-	3	858	c.367G>A	c.(367-369)GAG>AAG	p.E123K		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	123					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			TAGCCCAGCTCGTGGATCCGC	0.647													13	32					0	0	0.002450	0	0
ANO1	55107	broad.mit.edu	37	11	69972233	69972234	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:69972233_69972234CC>AT	uc001opj.2	+	10	1334_1335	c.1029_1030CC>AT	c.(1027-1032)ATCCCT>ATATCT	p.P344S	ANO1_uc001opk.1_Missense_Mutation_p.P316S|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.P79S	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	344	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						AGATGCTCATCCCTGCCTCCAT	0.594													48	34					0	0	0.004672	0	0
NUMA1	4926	broad.mit.edu	37	11	71721864	71721864	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:71721864G>A	uc001orl.1	-	17	4859	c.4687C>T	c.(4687-4689)CAA>TAA	p.Q1563*	NUMA1_uc001orj.2_5'Flank|NUMA1_uc009ysw.1_Nonsense_Mutation_p.Q1112*|NUMA1_uc001ork.1_Nonsense_Mutation_p.Q427*|NUMA1_uc001orm.1_Nonsense_Mutation_p.Q1549*|NUMA1_uc001orn.2_Nonsense_Mutation_p.Q1126*	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1563	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TTGCTGGCTTGGTCAGAGTCA	0.567			T	RARA	APL								102	608					0	0	0.014410	0	0
FOLR1	2348	broad.mit.edu	37	11	71903380	71903380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:71903380G>A	uc001orz.1	+	3	301	c.163G>A	c.(163-165)GAG>AAG	p.E55K	FOLR1_uc001osa.1_Missense_Mutation_p.E55K|FOLR1_uc001osb.1_Missense_Mutation_p.E55K|FOLR1_uc001osc.1_Missense_Mutation_p.E55K|FOLR1_uc001osd.1_Missense_Mutation_p.E55K	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	55					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						CAAGTTGCATGAGCAGGTGGG	0.562													36	140					0	0	0.006230	0	0
P2RY2	5029	broad.mit.edu	37	11	72946081	72946081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:72946081C>T	uc001otj.2	+	3	1210	c.877C>T	c.(877-879)CCG>TCG	p.P293S	P2RY2_uc001otk.2_Missense_Mutation_p.P293S|P2RY2_uc001otl.2_Missense_Mutation_p.P293S	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	293	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	GGTTACCCGGCCGCTGGCCAG	0.627													15	9					0	0	0.003163	0	0
PGM2L1	283209	broad.mit.edu	37	11	74053589	74053589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:74053589G>A	uc001ovb.1	-	12	1845	c.1549C>T	c.(1549-1551)CCA>TCA	p.P517S		NM_173582	NP_775853	Q6PCE3	PGM2L_HUMAN	phosphoglucomutase 2-like 1	517					glucose 1-phosphate metabolic process	cytosol	glucose-1,6-bisphosphate synthase activity|phosphoglucomutase activity			ovary(1)	1	Breast(11;3.32e-06)					CAAAATTTTGGATATTCTTTT	0.323													58	30					0	0	0.014410	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74913986	74913986	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:74913986C>T	uc001owb.2	+	12	2191	c.1804C>T	c.(1804-1806)CAG>TAG	p.Q602*	SLCO2B1_uc010rrq.1_Nonsense_Mutation_p.Q347*|SLCO2B1_uc010rrr.1_Nonsense_Mutation_p.Q458*|SLCO2B1_uc010rrs.1_Nonsense_Mutation_p.Q486*|SLCO2B1_uc001owc.2_Nonsense_Mutation_p.Q375*|SLCO2B1_uc001owd.2_Nonsense_Mutation_p.Q580*	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	602	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	TGTGGGCATCCAGTTCATGTT	0.443													48	49					0	0	0.014410	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74914466	74914466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:74914466G>A	uc001owb.2	+	13	2330	c.1943G>A	c.(1942-1944)CGA>CAA	p.R648Q	SLCO2B1_uc010rrr.1_Missense_Mutation_p.R504Q|SLCO2B1_uc010rrs.1_Missense_Mutation_p.R532Q|SLCO2B1_uc001owc.2_Missense_Mutation_p.R421Q|SLCO2B1_uc001owd.2_Missense_Mutation_p.R626Q	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	648	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GACCTGCTCCGAAACCGGTGA	0.577													47	21					0	0	0.014410	0	0
GDPD5	81544	broad.mit.edu	37	11	75152223	75152223	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:75152223G>A	uc001owo.3	-	15	1995	c.1458C>T	c.(1456-1458)TCC>TCT	p.S486S	GDPD5_uc001owp.3_Silent_p.S486S|GDPD5_uc001own.3_Silent_p.S241S|GDPD5_uc009yuc.2_Silent_p.S348S|GDPD5_uc009yud.2_Silent_p.S367S	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	486	Extracellular (Potential).				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						TCCAGAGGGGGGAAGGCACCT	0.647													19	9					0	0	0.007413	0	0
ODZ4	26011	broad.mit.edu	37	11	78419459	78419459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:78419459C>T	uc001ozl.3	-	27	4619	c.4156G>A	c.(4156-4158)GAT>AAT	p.D1386N		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1386	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GATGTGAGATCATTAGAGCCG	0.512													19	8					0	0	0.010504	0	0
CCDC89	220388	broad.mit.edu	37	11	85396406	85396406	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:85396406G>A	uc001pau.1	-	1	915	c.768C>T	c.(766-768)AGC>AGT	p.S256S		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	256	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CCTGGCTCAGGCTGCTGTGTG	0.577													24	12					0	0	0.014323	0	0
FAT3	120114	broad.mit.edu	37	11	92533956	92533956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:92533956G>A	uc001pdj.3	+	9	7794	c.7777G>A	c.(7777-7779)GAA>AAA	p.E2593K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2593	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGTTGTGGATGAAAATGACAA	0.483										TCGA Ovarian(4;0.039)			243	161					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92565152	92565152	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:92565152G>A	uc001pdj.3	+	13	9863	c.9846G>A	c.(9844-9846)GGG>GGA	p.G3282G		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3282	Cadherin 30.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACGAACAAGGGAAATTTAAGA	0.388										TCGA Ovarian(4;0.039)			14	58					0	0	0.002450	0	0
PGR	5241	broad.mit.edu	37	11	100999728	100999728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:100999728G>A	uc001pgh.2	-	1	817	c.74C>T	c.(73-75)TCC>TTC	p.S25F	PGR_uc001pgi.2_Missense_Mutation_p.S25F|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	25	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CAGCAGTGGGGATCCGACCTC	0.672													14	5					0	0	0.001855	0	0
PGR	5241	broad.mit.edu	37	11	100999743	100999743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:100999743G>A	uc001pgh.2	-	1	802	c.59C>T	c.(58-60)TCC>TTC	p.S20F	PGR_uc001pgi.2_Missense_Mutation_p.S20F|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	20	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	GACCTCGGGGGAGGGCGGGCC	0.677													10	4					0	0	0.006214	0	0
MMP27	64066	broad.mit.edu	37	11	102575304	102575304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:102575304G>A	uc001phd.1	-	2	328	c.305C>T	c.(304-306)ACC>ATC	p.T102I		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	102					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CCCAGGGAGGGTGTAGCCATA	0.468													34	34					0	0	0.012213	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110450329	110450329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:110450329G>A	uc001pkz.1	-	16	3626	c.3341C>T	c.(3340-3342)CCC>CTC	p.P1114L	ARHGAP20_uc001pky.1_Missense_Mutation_p.P1091L|ARHGAP20_uc009yyb.1_Missense_Mutation_p.P1078L|ARHGAP20_uc001pla.1_Missense_Mutation_p.P1078L|ARHGAP20_uc001plb.2_Missense_Mutation_p.P657L	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	1114					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		GTCCTGGAAGGGAGAAGAACT	0.512													47	28					0	0	0.013114	0	0
C11orf53	341032	broad.mit.edu	37	11	111156661	111156661	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:111156661T>A	uc001plc.2	+	4	740	c.593T>A	c.(592-594)GTG>GAG	p.V198E		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	198											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CCGCCCAAGGTGGGGCCACTC	0.577													50	21					0	0	0.014410	0	0
ZW10	9183	broad.mit.edu	37	11	113631062	113631062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:113631062G>A	uc001poe.2	-	5	486	c.449C>T	c.(448-450)TCC>TTC	p.S150F	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	150	Interaction with RINT1.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		GCATTTTCTGGATTTTAATAA	0.353													32	21					0	0	0.013726	0	0
HTR3B	9177	broad.mit.edu	37	11	113816638	113816639	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:113816638_113816639GG>AA	uc001pok.2	+	9	1172_1173	c.1105_1106GG>AA	c.(1105-1107)GGA>AAA	p.G369K	HTR3B_uc001pol.2_Missense_Mutation_p.G358K	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	369	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CTCGCTGTATGGAGAGCACCTG	0.55													9	25					0	0	0.004672	0	0
NNMT	4837	broad.mit.edu	37	11	114183152	114183152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:114183152G>A	uc001por.1	+	5	1012	c.748G>A	c.(748-750)GAA>AAA	p.E250K	NNMT_uc001pos.1_Missense_Mutation_p.E250K	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	250					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	GGCCAACAACGAAGGACTTTT	0.512													53	31					0	0	0.014410	0	0
FAM55D	54827	broad.mit.edu	37	11	114442193	114442193	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:114442193G>A	uc001ppc.2	-	6	1283	c.1102C>T	c.(1102-1104)CTG>TTG	p.L368L	FAM55D_uc001ppd.2_Silent_p.L84L	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	368						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		ACTGACTTCAGTGCTGATAAC	0.353													76	48					0	0	0.014410	0	0
FAM55D	54827	broad.mit.edu	37	11	114450906	114450906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:114450906C>T	uc001ppc.2	-	5	1228	c.1047G>A	c.(1045-1047)ATG>ATA	p.M349I	FAM55D_uc001ppd.2_Missense_Mutation_p.M65I	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	349						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TGGAATCTCCCATTAGGTATA	0.438													71	49					0	0	0.014410	0	0
FAM55D	54827	broad.mit.edu	37	11	114453477	114453477	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:114453477C>T	uc001ppc.2	-	3	544	c.363G>A	c.(361-363)CTG>CTA	p.L121L	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	121						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		CCCTCACCTCCAGCAGGATGT	0.597													28	24					0	0	0.005443	0	0
BUD13	84811	broad.mit.edu	37	11	116633647	116633647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:116633647G>A	uc001ppn.2	-	4	692	c.658C>T	c.(658-660)CAT>TAT	p.H220Y	BUD13_uc001ppo.2_Intron|BUD13_uc009yzc.2_Missense_Mutation_p.H220Y	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	220	Arg-rich.									large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		GGTGAATCATGACGGACTCTC	0.547													249	150					0	0	0.014410	0	0
PAFAH1B2	5049	broad.mit.edu	37	11	117034544	117034544	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:117034544G>C	uc001pqe.1	+	5	449	c.347G>C	c.(346-348)GGT>GCT	p.G116A	PAFAH1B2_uc009yzk.1_Missense_Mutation_p.G116A|PAFAH1B2_uc009yzl.1_Missense_Mutation_p.G116A|PAFAH1B2_uc009yzm.2_RNA|PAFAH1B2_uc009yzn.2_RNA|PAFAH1B2_uc009yzj.1_RNA	NM_002572	NP_002563	P68402	PA1B2_HUMAN	platelet-activating factor acetylhydrolase,	116					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity			kidney(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;1.68e-05)|Epithelial(105;0.000162)|all cancers(92;0.00111)		GAAGTAGCAGGTGGGATCGAG	0.428			T	IGH@	MLCLS								37	33					0	0	0.003271	0	0
MLL	4297	broad.mit.edu	37	11	118344458	118344458	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:118344458C>T	uc001pta.2	+	3	2607	c.2584C>T	c.(2584-2586)CGA>TGA	p.R862*	MLL_uc001ptb.2_Nonsense_Mutation_p.R862*|MLL_uc001psz.1_Nonsense_Mutation_p.R895*|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	862					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GTCCAAAGATCGAGATGCTGA	0.303			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								9	9					0	0	0.004482	0	0
MLL	4297	broad.mit.edu	37	11	118366446	118366446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:118366446C>T	uc001pta.2	+	19	5409	c.5386C>T	c.(5386-5388)CCT>TCT	p.P1796S	MLL_uc001ptb.2_Missense_Mutation_p.P1799S	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1796					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AGTGCTTCCACCTTCACTTGA	0.328			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								35	25					0	0	0.004289	0	0
FOXR1	283150	broad.mit.edu	37	11	118851203	118851203	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:118851203G>A	uc001pui.2	+	5	840	c.615G>A	c.(613-615)AAG>AAA	p.K205K	FOXR1_uc001puj.2_Intron|FOXR1_uc001puk.2_Silent_p.K36K	NM_181721	NP_859072	Q6PIV2	FOXR1_HUMAN	forkhead box R1	205	Fork-head.				embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		TCCATAGAAAGCACTTCCCCT	0.542													35	27					0	0	0.013726	0	0
PVRL1	5818	broad.mit.edu	37	11	119549141	119549141	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:119549141G>A	uc001pwv.2	-	2	586	c.414C>T	c.(412-414)CTC>CTT	p.L138L	PVRL1_uc001pwu.1_Silent_p.L138L|PVRL1_uc001pww.2_Silent_p.L138L	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	138	Extracellular (Potential).|Ig-like V-type.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		CCGTGAGATTGAGCTGGCTTT	0.612													40	30					0	0	0.009718	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120331436	120331436	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:120331436C>T	uc001pxl.1	+	27	2590	c.2583C>T	c.(2581-2583)ATC>ATT	p.I861I	ARHGEF12_uc009zat.2_Silent_p.I842I|ARHGEF12_uc010rzn.1_Silent_p.I758I|ARHGEF12_uc009zau.1_Silent_p.I758I	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	861	DH.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		CCTCTGTTATCGATCAGATTG	0.328			T	MLL	AML								49	28					0	0	0.014410	0	0
SORL1	6653	broad.mit.edu	37	11	121425922	121425922	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:121425922G>A	uc001pxx.2	+	18	2546	c.2466G>A	c.(2464-2466)GGG>GGA	p.G822G		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	822	Extracellular (Potential).|LDL-receptor class B 1.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GAAGCACAGGGCAAGAGGTGA	0.468													50	41					0	0	0.014410	0	0
SORL1	6653	broad.mit.edu	37	11	121477932	121477932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:121477932C>T	uc001pxx.2	+	37	5179	c.5099C>T	c.(5098-5100)TCC>TTC	p.S1700F	SORL1_uc010rzp.1_Missense_Mutation_p.S546F|SORL1_uc010rzq.1_Missense_Mutation_p.S315F	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1700	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATGTGGGCCTCCCAGAGGGCT	0.453													21	14					0	0	0.014323	0	0
BLID	414899	broad.mit.edu	37	11	121986447	121986447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:121986447C>T	uc001pyf.2	-	1	477	c.184G>A	c.(184-186)GAA>AAA	p.E62K	LOC399959_uc009zba.2_Intron	NM_001001786	NP_001001786	Q8IZY5	BLID_HUMAN	BRCC2 protein	62					apoptosis	mitochondrion					0		Breast(109;0.0164)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;2.08e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.101)		AGCACTGTTTCCTTAGGCAAC	0.488											OREG0021435	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	56	38					0	0	0.014410	0	0
ZNF202	7753	broad.mit.edu	37	11	123600426	123600426	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:123600426G>A	uc001pzd.1	-	5	910	c.510C>T	c.(508-510)ACC>ACT	p.T170T	ZNF202_uc001pzc.1_5'UTR|ZNF202_uc001pze.1_Silent_p.T170T|ZNF202_uc001pzf.1_Silent_p.T170T	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	170					lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		ACTGCTCGGGGGTCGAGCTTT	0.597													18	10					0	0	0.006122	0	0
OR6X1	390260	broad.mit.edu	37	11	123624553	123624553	+	Missense_Mutation	SNP	C	T	T	rs140203672	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:123624553C>T	uc010rzy.1	-	1	674	c.674G>A	c.(673-675)CGA>CAA	p.R225Q		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGAAGGAATTCGTAGGATTGC	0.473													24	14					0	0	0.003954	0	0
OR8D2	283160	broad.mit.edu	37	11	124189931	124189932	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:124189931_124189932GT>AA	uc010sah.1	-	1	162_163	c.162_163AC>TT	c.(160-165)CAACTT>CATTTT	p.54_55QL>HF		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	54_55	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GGAGGGTAAAGTTGAGAACTGA	0.436													34	20					0	0	0.004672	0	0
OR8B2	26595	broad.mit.edu	37	11	124252876	124252876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:124252876G>A	uc010sai.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GCCACATAGCGATCATATGCC	0.413													15	10					0	0	0.002450	0	0
OR8B4	283162	broad.mit.edu	37	11	124294171	124294171	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:124294171G>A	uc010sak.1	-	1	597	c.597C>T	c.(595-597)TTC>TTT	p.F199F		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CAACAACAATGAAAAATACCA	0.473													6	6					0	0	0.001168	0	0
OR8A1	390275	broad.mit.edu	37	11	124440061	124440061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:124440061G>A	uc010san.1	+	1	97	c.97G>A	c.(97-99)GGT>AGT	p.G33S		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	33	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		CATTCTCAAGGGTTTAACGAA	0.522													26	16					0	0	0.006320	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781825	128781825	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:128781825C>T	uc001qet.2	+	2	971	c.657C>T	c.(655-657)TTC>TTT	p.F219F	KCNJ5_uc009zck.2_Silent_p.F219F|KCNJ5_uc001qew.2_Silent_p.F219F	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	219	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	GCCTCATGTTCCGGGTGGGCG	0.587													23	24					0	0	0.002780	0	0
SNX19	399979	broad.mit.edu	37	11	130785160	130785161	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:130785160_130785161GG>AA	uc001qgk.3	-	1	1222_1223	c.674_675CC>TT	c.(673-675)CCC>CTT	p.P225L	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Missense_Mutation_p.P225L|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	225	PXA.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		AGTGGGGCTTGGGCACCAGCCC	0.554													18	14					0	0	0.004672	0	0
NCAPD3	23310	broad.mit.edu	37	11	134027867	134027867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr11:134027867G>A	uc001qhd.1	-	31	4736	c.4130C>T	c.(4129-4131)CCT>CTT	p.P1377L	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA|NCAPD3_uc001qhc.1_Missense_Mutation_p.P327L	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1377					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TAAAGTGAAAGGCAGCACTCC	0.483													83	60					0	0	0.014410	0	0
HSN2	378465	broad.mit.edu	37	12	977790	977790	+	Silent	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:977790A>T	uc001qiq.2	+	1	921	c.795A>T	c.(793-795)GTA>GTT	p.V265V	WNK1_uc001qio.3_Intron|WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_213655	NP_998820			hereditary sensory neuropathy, type II												0	all_cancers(10;0.0107)|all_epithelial(11;0.0151)|Ovarian(42;0.0512)|all_lung(10;0.0521)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.000967)|BRCA - Breast invasive adenocarcinoma(9;0.0178)			GCAACTGTGTATTTGAATTTC	0.443													17	23					0	0	0.008871	0	0
HSN2	378465	broad.mit.edu	37	12	977792	977792	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:977792T>C	uc001qiq.2	+	1	923	c.797T>C	c.(796-798)TTT>TCT	p.F266S	WNK1_uc001qio.3_Intron|WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_213655	NP_998820			hereditary sensory neuropathy, type II												0	all_cancers(10;0.0107)|all_epithelial(11;0.0151)|Ovarian(42;0.0512)|all_lung(10;0.0521)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.000967)|BRCA - Breast invasive adenocarcinoma(9;0.0178)			AACTGTGTATTTGAATTTCAT	0.438													16	22					0	0	0.007413	0	0
WNK1	65125	broad.mit.edu	37	12	990932	990932	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:990932C>T	uc001qio.3	+	13	3693	c.3186C>T	c.(3184-3186)ACC>ACT	p.T1062T	WNK1_uc001qip.3_Silent_p.T815T|WNK1_uc001qir.3_Silent_p.T235T	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1062					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CCCAGCCGACCACTTTGGCTT	0.458													41	91					0	0	0.011902	0	0
ERC1	23085	broad.mit.edu	37	12	1137460	1137460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:1137460C>T	uc001qjb.2	+	2	632	c.391C>T	c.(391-393)CCT>TCT	p.P131S	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.P131S|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Missense_Mutation_p.P131S	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	131					I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			GCATCACCTCCCTCCTGTGAG	0.498													23	54					0	0	0.012319	0	0
CACNA2D4	93589	broad.mit.edu	37	12	2027550	2027550	+	Silent	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:2027550G>T	uc001qjp.2	-	1	321	c.90C>A	c.(88-90)TCC>TCA	p.S30S	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.S30S	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	30	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		AGCGGCTGCTGGAGCTGGGGT	0.642													6	12					0.00198382	0.00216786	0.001984	1	0
CACNA1C	775	broad.mit.edu	37	12	2705123	2705123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:2705123C>T	uc009zdu.1	+	20	3060	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S913F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S916F|CACNA1C_uc001qke.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S916F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S916F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S916F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S916F|CACNA1C_uc001qko.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S916F|CACNA1C_uc001qku.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S916F|CACNA1C_uc001qks.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S916F|CACNA1C_uc001qka.1_Missense_Mutation_p.S451F|CACNA1C_uc001qki.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkw.2_Missense_Mutation_p.S205F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	916	Helical; Name=S1 of repeat III; (Potential).|III.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGCAGCATTTCCCTGGCTGCT	0.582													21	41					0	0	0.010504	0	0
CACNA1C	775	broad.mit.edu	37	12	2788663	2788663	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:2788663G>A	uc009zdu.1	+	44	5602	c.5289G>A	c.(5287-5289)CGG>CGA	p.R1763R	CACNA1C_uc009zdv.1_Silent_p.R1712R|CACNA1C_uc001qkb.2_Silent_p.R1715R|CACNA1C_uc001qkc.2_Silent_p.R1734R|CACNA1C_uc001qke.2_Silent_p.R1704R|CACNA1C_uc001qkf.2_Silent_p.R1723R|CACNA1C_uc001qjz.2_Silent_p.R1715R|CACNA1C_uc001qkd.2_Silent_p.R1734R|CACNA1C_uc001qkg.2_Silent_p.R1721R|CACNA1C_uc009zdw.1_Silent_p.R1756R|CACNA1C_uc001qkh.2_Silent_p.R1723R|CACNA1C_uc001qkl.2_Silent_p.R1763R|CACNA1C_uc001qkn.2_Silent_p.R1715R|CACNA1C_uc001qko.2_Silent_p.R1735R|CACNA1C_uc001qkp.2_Silent_p.R1715R|CACNA1C_uc001qkr.2_Silent_p.R1732R|CACNA1C_uc001qku.2_Silent_p.R1715R|CACNA1C_uc001qkq.2_Silent_p.R1743R|CACNA1C_uc001qks.2_Silent_p.R1715R|CACNA1C_uc001qkt.2_Silent_p.R1734R|CACNA1C_uc001qki.1_Silent_p.R1451R|CACNA1C_uc001qkj.1_Silent_p.R1451R|CACNA1C_uc001qkk.1_Silent_p.R1451R|CACNA1C_uc001qkm.1_Silent_p.R1440R|CACNA1C_uc010sea.1_Silent_p.R406R|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Silent_p.R33R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1763	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GCGACGGCCGGAGCGCCTTCC	0.652													5	11					0	0	0.000602	0	0
CCND2	894	broad.mit.edu	37	12	4409108	4409108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:4409108G>A	uc001qmo.2	+	5	1108	c.803G>A	c.(802-804)GGA>GAA	p.G268E		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	268					cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			CAACGTGACGGATCCAAGTCG	0.562			T	IGL@	NHL,CLL								14	30					0	0	0.002450	0	0
FGF23	8074	broad.mit.edu	37	12	4479808	4479808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:4479808G>A	uc001qmq.1	-	3	603	c.457C>T	c.(457-459)CCG>TCG	p.P153S		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	153					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TGGGAGTACGGGGGTGGGTTC	0.617													38	72					0	0	0.004878	0	0
KCNA6	3742	broad.mit.edu	37	12	4920434	4920434	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:4920434C>T	uc001qng.2	+	1	2093	c.1227C>T	c.(1225-1227)ATC>ATT	p.I409I		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	409						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TTCCCAGCATCCCGGATGCCT	0.567										HNSCC(72;0.22)			51	72					0	0	0.014410	0	0
NTF3	4908	broad.mit.edu	37	12	5603651	5603651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:5603651G>A	uc001qnl.3	+	1	354	c.271G>A	c.(271-273)GAA>AAA	p.E91K	NTF3_uc001qnk.3_Missense_Mutation_p.E104K	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	91					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						AATGGACACCGAACTGCTGCG	0.617													29	49					0	0	0.009535	0	0
ANO2	57101	broad.mit.edu	37	12	5744347	5744347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:5744347C>T	uc001qnm.2	-	17	1859	c.1787G>A	c.(1786-1788)GGC>GAC	p.G596D		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	601	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GGCCACAGCGCCGTAGATCTC	0.522													11	20					0	0	0.010729	0	0
ANO2	57101	broad.mit.edu	37	12	5756906	5756906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:5756906G>A	uc001qnm.2	-	16	1679	c.1607C>T	c.(1606-1608)TCC>TTC	p.S536F		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	541	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GAATAAGATGGAGGCAAAGTT	0.458													6	10					0	0	0.001168	0	0
VWF	7450	broad.mit.edu	37	12	6062751	6062751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:6062751C>T	uc001qnn.1	-	48	8147	c.7897G>A	c.(7897-7899)GAA>AAA	p.E2633K	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2633	VWFC 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TTATTTTCTTCCTTGTAACCC	0.463													31	77					0	0	0.013726	0	0
VWF	7450	broad.mit.edu	37	12	6125984	6125984	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:6125984G>A	uc001qnn.1	-	29	5356	c.5106C>T	c.(5104-5106)TTC>TTT	p.F1702F	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1702	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AAGAAGCTGGGAAACTGGAGG	0.522													57	96					0	0	0.014410	0	0
VWF	7450	broad.mit.edu	37	12	6173516	6173516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:6173516G>A	uc001qnn.1	-	12	1578	c.1328C>T	c.(1327-1329)TCC>TTC	p.S443F	VWF_uc010set.1_Missense_Mutation_p.S443F	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	443	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GACGGTGACGGAGCGGGTGCA	0.642													9	24					0	0	0.008291	0	0
ACRBP	84519	broad.mit.edu	37	12	6752722	6752722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:6752722G>A	uc001qpu.1	-	6	1108	c.1060C>T	c.(1060-1062)CTT>TTT	p.L354F	ACRBP_uc010sfg.1_Missense_Mutation_p.L321F	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	354						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						CCGAAACCAAGGATCTCCTCC	0.552													35	54					0	0	0.004289	0	0
C12orf53	196500	broad.mit.edu	37	12	6806600	6806600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:6806600C>T	uc001qqf.1	-	3	452	c.376G>A	c.(376-378)GGA>AGA	p.G126R	C12orf53_uc001qqg.1_Missense_Mutation_p.G126R	NM_153685	NP_710152	Q8IYJ0	CL053_HUMAN	hypothetical protein LOC196500 precursor	126	Extracellular (Potential).					integral to membrane					0						TCCAGAAATCCGGGATTGGCA	0.597													22	43					0	0	0.006320	0	0
C1S	716	broad.mit.edu	37	12	7171668	7171668	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:7171668C>T	uc001qsj.2	+	8	1208	c.489C>T	c.(487-489)TTC>TTT	p.F163F	C1S_uc001qsk.2_Silent_p.F163F|C1S_uc001qsl.2_Silent_p.F163F|C1S_uc009zfr.2_5'UTR|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	163	EGF-like; calcium-binding.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	CGGAATATTTCCTCCATGATG	0.463													38	54					0	0	0.006999	0	0
C1S	716	broad.mit.edu	37	12	7172504	7172504	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:7172504C>T	uc001qsj.2	+	9	1337	c.618C>T	c.(616-618)ATC>ATT	p.I206I	C1S_uc001qsk.2_Silent_p.I206I|C1S_uc001qsl.2_Silent_p.I206I|C1S_uc009zfr.2_Silent_p.I39I|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	206	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	AATACCAGATCCGGTTGGAGA	0.473													73	103					0	0	0.014410	0	0
C1RL	51279	broad.mit.edu	37	12	7260858	7260858	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:7260858C>A	uc001qsn.2	-	2	306	c.289G>T	c.(289-291)GAC>TAC	p.D97Y	C1RL_uc009zft.2_Missense_Mutation_p.D97Y|C1RL_uc001qso.1_Missense_Mutation_p.D97Y|LOC283314_uc001qsp.2_5'Flank|LOC283314_uc010sgb.1_5'Flank	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	97	CUB.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						GTGACAGAGTCCCCTGCACAG	0.642													18	25					1.56452e-12	1.72766e-12	0.007413	1	0
CLSTN3	9746	broad.mit.edu	37	12	7303190	7303190	+	Missense_Mutation	SNP	C	T	T	rs141776530		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:7303190C>T	uc001qsr.2	+	15	2574	c.2296C>T	c.(2296-2298)CGG>TGG	p.R766W	CLSTN3_uc001qss.2_Missense_Mutation_p.R778W	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	766	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						GGCTCGTTATCGGCTGCGACA	0.577													24	55					0	0	0.002780	0	0
ACSM4	341392	broad.mit.edu	37	12	7463176	7463176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:7463176G>A	uc001qsx.1	+	3	454	c.454G>A	c.(454-456)GAC>AAC	p.D152N		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	152					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GACAGCAAAAGACATCCTCTA	0.562													7	9					0	0	0.006214	0	0
CD163L1	283316	broad.mit.edu	37	12	7586282	7586282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:7586282C>T	uc001qsy.2	-	3	159	c.133G>A	c.(133-135)GAT>AAT	p.D45N	CD163L1_uc010sge.1_Missense_Mutation_p.D45N	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	45	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AACTCCAAATCTGTTCCATCT	0.448													37	51					0	0	0.004878	0	0
NECAP1	25977	broad.mit.edu	37	12	8245541	8245541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:8245541C>T	uc001qtx.2	+	6	644	c.566C>T	c.(565-567)CCC>CTC	p.P189L	NECAP1_uc001qty.2_Missense_Mutation_p.P47L	NM_015509	NP_056324	Q8NC96	NECP1_HUMAN	NECAP endocytosis associated 1	189					endocytosis|protein transport	clathrin coated vesicle membrane|plasma membrane				ovary(1)	1				Kidney(36;0.0915)		TTACTCCCACCCCCGCCAGGA	0.512													74	104					0	0	0.014410	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374817	8374817	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:8374817T>C	uc001qui.2	-	7	1555	c.996A>G	c.(994-996)CAA>CAG	p.Q332Q	FAM90A1_uc001quh.2_Silent_p.Q332Q	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	332							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		CTGGCGGAGGTTGGAGATTCT	0.652													5	14					0	0	0.000602	0	0
CLEC4D	338339	broad.mit.edu	37	12	8671664	8671664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:8671664C>T	uc001qun.2	+	4	485	c.292C>T	c.(292-294)CCT>TCT	p.P98S		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	98	C-type lectin.|Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					CTGCTATTTTCCTCTTACTGA	0.483													19	34					0	0	0.007413	0	0
A2ML1	144568	broad.mit.edu	37	12	9013789	9013789	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:9013789A>G	uc001quz.3	+	28	3496	c.3398A>G	c.(3397-3399)AAC>AGC	p.N1133S	A2ML1_uc001qva.1_Missense_Mutation_p.N713S|A2ML1_uc010sgm.1_Missense_Mutation_p.N633S	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	977						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TCCACGACCAACCTCTACACA	0.458													34	72					0	0	0.013726	0	0
A2M	2	broad.mit.edu	37	12	9264799	9264799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:9264799G>A	uc001qvk.1	-	4	552	c.439C>T	c.(439-441)CGT>TGT	p.R147C	A2M_uc009zgk.1_5'UTR	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	147					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	GAGACAACACGAAATTTCACT	0.393													19	42					0	0	0.010504	0	0
OLR1	4973	broad.mit.edu	37	12	10313505	10313505	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:10313505C>T	uc001qxo.1	-	4	558	c.444G>A	c.(442-444)TGG>TGA	p.W148*	OLR1_uc010sgz.1_Intron|OLR1_uc010sha.1_Intron	NM_002543	NP_002534	P78380	OLR1_HUMAN	oxidized low density lipoprotein (lectin-like)	148	Extracellular (Potential).|Neck.				blood circulation|blood coagulation|inflammatory response|leukocyte migration|proteolysis	extracellular region|integral to plasma membrane|membrane fraction	sugar binding			ovary(1)	1						CATGCCAGATCCAGTCTTGCG	0.423													37	66					0	0	0.006230	0	0
TAS2R42	353164	broad.mit.edu	37	12	11339232	11339232	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:11339232G>A	uc001qzr.1	-	1	312	c.312C>T	c.(310-312)AGC>AGT	p.S104S	PRB4_uc001qzf.1_Intron	NM_181429	NP_852094	Q7RTR8	T2R42_HUMAN	taste receptor, type 2, member 42	104	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0455)			AATAGAAAATGCTTAGGCAGG	0.403													14	21					0	0	0.001855	0	0
PRB2	653247	broad.mit.edu	37	12	11546714	11546714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:11546714C>T	uc010shk.1	-	3	333	c.298G>A	c.(298-300)GGA>AGA	p.G100R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGGGTGGTCCTTGTGGCTTT	0.617													122	419					0	0	0.014410	0	0
MANSC1	54682	broad.mit.edu	37	12	12483519	12483519	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:12483519G>A	uc001rai.1	-	4	996	c.738C>T	c.(736-738)ACC>ACT	p.T246T	MANSC1_uc010shm.1_Silent_p.T180T|MANSC1_uc001raj.1_Silent_p.T212T|MANSC1_uc009zht.1_Silent_p.T165T	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	246	Thr-rich.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		TGGGTAGAAGGGTGGCGGGCT	0.562													21	57					0	0	0.003330	0	0
KIAA1467	57613	broad.mit.edu	37	12	13232794	13232794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:13232794C>T	uc001rbi.2	+	12	1737	c.1714C>T	c.(1714-1716)CCA>TCA	p.P572S	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	572						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		CGAAGGCCATCCAGCAGCCCT	0.532													21	38					0	0	0.014323	0	0
EMP1	2012	broad.mit.edu	37	12	13367509	13367509	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:13367509T>A	uc001rbr.2	+	5	605	c.358T>A	c.(358-360)TAT>AAT	p.Y120N	EMP1_uc009zhy.2_Missense_Mutation_p.Y53N|EMP1_uc010shr.1_Silent_p.I107I	NM_001423	NP_001414	P54849	EMP1_HUMAN	epithelial membrane protein 1	120					cell growth|cell proliferation|epidermis development	integral to membrane|membrane fraction					0		Prostate(47;0.194)		BRCA - Breast invasive adenocarcinoma(232;0.153)		CACTAGTCATTATGCGAATCG	0.473													58	90					0	0	0.014410	0	0
PLBD1	79887	broad.mit.edu	37	12	14689571	14689571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:14689571G>A	uc001rcc.1	-	5	793	c.632C>T	c.(631-633)CCC>CTC	p.P211L		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	211					lipid catabolic process	extracellular region	hydrolase activity				0						GTTTTTTGTGGGAGAGAGTGA	0.448													28	58					0	0	0.006320	0	0
GUCY2C	2984	broad.mit.edu	37	12	14809543	14809543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:14809543C>T	uc001rcd.2	-	12	1510	c.1373G>A	c.(1372-1374)AGA>AAA	p.R458K		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	458	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						ATAATCTTTTCTATATTTTCT	0.368													39	49					0	0	0.005524	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18573894	18573894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:18573894C>T	uc001rdt.2	+	16	2328	c.2212C>T	c.(2212-2214)CGT>TGT	p.R738C	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.R779C|PIK3C2G_uc010sic.1_Missense_Mutation_p.R557C	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	738					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TCAAGAAATTCGTAAAGTGGC	0.363													27	54					0	0	0.007291	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891712	18891712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:18891712G>A	uc001rdy.2	+	1	668	c.510G>A	c.(508-510)TGG>TGA	p.W170*	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	170					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				ACGGACTTTGGAAATCTAAAT	0.388													18	33					0	0	0.007413	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20852565	20852565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:20852565C>T	uc001rej.3	+	3	410	c.55C>T	c.(55-57)CCT>TCT	p.P19S	SLCO1C1_uc010sii.1_Missense_Mutation_p.P19S|SLCO1C1_uc010sij.1_Missense_Mutation_p.P19S|SLCO1C1_uc009zip.2_5'UTR|SLCO1C1_uc001rei.2_Missense_Mutation_p.P19S|SLCO1C1_uc010sik.1_Intron	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	19	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TTCAGTGCAACCTGTTGGAAG	0.373													13	30					0	0	0.001855	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032513	21032513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:21032513C>T	uc001rek.2	+	10	1405	c.1279C>T	c.(1279-1281)CCT>TCT	p.P427S	SLCO1B3_uc001rel.2_Missense_Mutation_p.P427S|SLCO1B3_uc010sil.1_Missense_Mutation_p.P427S|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.P252S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	427	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TCTATATTTCCCTCTAATCTG	0.308													23	46					0	0	0.005443	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21069058	21069058	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:21069058A>C	uc001rek.2	+	15	2112	c.1986A>C	c.(1984-1986)GAA>GAC	p.E662D	SLCO1B3_uc001rel.2_Missense_Mutation_p.E662D|SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	662	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CGGACAATGAAAGAAAAGTAA	0.313													14	28					0	0	0.003163	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205097	21205097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:21205097G>A	uc010sin.1	+	9	1258	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.E467K	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	420						membrane	transporter activity				0						CAATTGTGATGAAAGTCAATG	0.363													29	66					0	0	0.012213	0	0
GYS2	2998	broad.mit.edu	37	12	21727101	21727101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:21727101C>T	uc001rfb.2	-	4	910	c.655G>A	c.(655-657)GAT>AAT	p.D219N		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	219					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TTGTAGAAATCAATATTTGCT	0.408													16	36					0	0	0.007413	0	0
KIAA0528	9847	broad.mit.edu	37	12	22643080	22643080	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:22643080G>A	uc001rfq.2	-	12	1563	c.1335C>T	c.(1333-1335)ACC>ACT	p.T445T	KIAA0528_uc010sir.1_Silent_p.T260T|KIAA0528_uc010sis.1_Silent_p.T445T|KIAA0528_uc010sit.1_Silent_p.T447T|KIAA0528_uc010siu.1_Silent_p.T445T|KIAA0528_uc001rfr.2_Silent_p.T436T|KIAA0528_uc009ziy.1_Silent_p.T447T	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	445							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						AGCCTTCCACGGTGCCATCCT	0.448													32	51					0	0	0.003755	0	0
BCAT1	586	broad.mit.edu	37	12	24989501	24989501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:24989501C>T	uc001rgd.3	-	8	1289	c.847G>A	c.(847-849)GGC>AGC	p.G283S	BCAT1_uc001rgc.2_Missense_Mutation_p.G282S|BCAT1_uc010six.1_Missense_Mutation_p.G295S|BCAT1_uc010siy.1_Missense_Mutation_p.G246S|BCAT1_uc001rge.3_Missense_Mutation_p.G222S	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	283					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	AGAATGATGCCATCTAGTGGA	0.423													6	14					0	0	0.001168	0	0
IFLTD1	160492	broad.mit.edu	37	12	25699394	25699394	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:25699394C>T	uc001rgs.2	-	3	492	c.342G>A	c.(340-342)AAG>AAA	p.K114K	IFLTD1_uc001rgt.1_Silent_p.K17K|IFLTD1_uc010sji.1_Silent_p.K135K|IFLTD1_uc010sjj.1_Silent_p.K51K|IFLTD1_uc009zjc.2_Silent_p.K135K	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	114						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					CTGTAAGTTTCTTTGAATCAC	0.368													22	37					0	0	0.014323	0	0
ITPR2	3709	broad.mit.edu	37	12	26749938	26749938	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:26749938G>A	uc001rhg.2	-	31	4549	c.4132C>T	c.(4132-4134)CTG>TTG	p.L1378L		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1378	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AACTCCACCAGGGTGATGTGG	0.488													38	74					0	0	0.004878	0	0
TM7SF3	51768	broad.mit.edu	37	12	27152555	27152555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:27152555G>A	uc010sjl.1	-	3	539	c.301C>T	c.(301-303)CTT>TTT	p.L101F		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	101						integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					TCTGGTCTAAGGATGAAAACC	0.468													27	44					0	0	0.004656	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30863305	30863305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:30863305G>A	uc001rji.1	-	18	3666	c.2915C>T	c.(2914-2916)CCT>CTT	p.P972L	CAPRIN2_uc001rjf.1_3'UTR|CAPRIN2_uc001rjg.1_Missense_Mutation_p.P639L|CAPRIN2_uc001rjh.1_Missense_Mutation_p.P922L|CAPRIN2_uc001rjj.1_Missense_Mutation_p.P638L|CAPRIN2_uc001rjk.3_3'UTR|CAPRIN2_uc001rjl.3_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	972					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					CACATCCACAGGGGTCATGCT	0.547													109	214					0	0	0.014410	0	0
ALG10B	144245	broad.mit.edu	37	12	38714259	38714259	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:38714259T>C	uc001rln.3	+	3	805	c.666T>C	c.(664-666)CCT>CCC	p.P222P	ALG10B_uc001rlo.3_Silent_p.P192P|ALG10B_uc010skk.1_Silent_p.P162P	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	222	Cytoplasmic (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				GACTTCCACCTATTAAAGGAC	0.383													3	119					0	0	0.004672	0	0
C12orf40	283461	broad.mit.edu	37	12	40078679	40078679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:40078679C>T	uc001rmc.2	+	10	1464	c.1297C>T	c.(1297-1299)CCT>TCT	p.P433S	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	433										ovary(6)	6						GGGAAATATACCTTCGGAAGA	0.323													14	32					0	0	0.003163	0	0
C12orf40	283461	broad.mit.edu	37	12	40078685	40078685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:40078685G>A	uc001rmc.2	+	10	1470	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	435										ovary(6)	6						TATACCTTCGGAAGAATTGCA	0.328													14	30					0	0	0.003163	0	0
PDZRN4	29951	broad.mit.edu	37	12	41957359	41957359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:41957359G>A	uc010skn.1	+	8	846	c.778G>A	c.(778-780)GAA>AAA	p.E260K	PDZRN4_uc001rmq.3_Missense_Mutation_p.E201K|PDZRN4_uc009zjz.2_Missense_Mutation_p.E199K|PDZRN4_uc001rmr.2_Missense_Mutation_p.E86K	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	459	PDZ 2.						ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GATAAATGGGGAAGATGTCCA	0.418													23	46					0	0	0.004656	0	0
GXYLT1	283464	broad.mit.edu	37	12	42481745	42481745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:42481745G>A	uc001rms.3	-	8	1391	c.1166C>T	c.(1165-1167)TCT>TTT	p.S389F	GXYLT1_uc001rmt.3_Missense_Mutation_p.S358F	NM_173601	NP_775872	Q4G148	GXLT1_HUMAN	glycosyltransferase 8 domain containing 3	389	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						ATCTTCAAAAGAACACTAGAG	0.254													16	31					0	0	0.006122	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43750291	43750291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:43750291G>A	uc010skx.1	-	38	5639	c.5639C>T	c.(5638-5640)TCA>TTA	p.S1880L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1880	GON.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACTTACCTCTGATCTTCGTAT	0.408													9	11					0	0	0.006214	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43769915	43769915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:43769915C>T	uc010skx.1	-	35	5257	c.5257G>A	c.(5257-5259)GAA>AAA	p.E1753K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1753	GON.					proteinaceous extracellular matrix	zinc ion binding	p.L1753F(1)		central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GTTAAATATTCCTTAGGGTTC	0.338													3	14					0	0	0.004672	0	0
TMEM117	84216	broad.mit.edu	37	12	44770492	44770492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:44770492C>T	uc001rod.2	+	7	949	c.883C>T	c.(883-885)CGT>TGT	p.R295C	TMEM117_uc001roe.2_Missense_Mutation_p.R191C|TMEM117_uc009zkc.2_Intron	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	295						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		GGAGGAATATCGTATTCACAT	0.294													31	43					0	0	0.010818	0	0
PLEKHA9	51054	broad.mit.edu	37	12	45567772	45567772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:45567772G>A	uc001rom.1	-	3	914	c.377C>T	c.(376-378)TCC>TTC	p.S126F	PLEKHA9_uc009zke.2_Missense_Mutation_p.S126F	NM_015899	NP_056983			pleckstrin homology domain containing, family A												0	Lung SC(27;0.192)|Renal(347;0.236)			GBM - Glioblastoma multiforme(48;0.173)		CAAATATAAGGAATTCTTATT	0.328													19	30					0	0	0.006122	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320946	46320946	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:46320946G>A	uc001rox.2	-	11	2825	c.2538C>T	c.(2536-2538)TCC>TCT	p.S846S	SFRS2IP_uc001row.2_Silent_p.S531S|SFRS2IP_uc001roy.1_Silent_p.S920S	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	846	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		ACTGAGAACGGGATTTTTTCC	0.473													50	122					0	0	0.014410	0	0
FAM113B	91523	broad.mit.edu	37	12	47629003	47629003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:47629003G>A	uc001rpn.2	+	4	888	c.157G>A	c.(157-159)GAG>AAG	p.E53K	FAM113B_uc010slj.1_Intron|FAM113B_uc001rpq.2_Missense_Mutation_p.E53K	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	53							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AGCAAGGGGGGAGCTGAACTT	0.612													15	35					0	0	0.003163	0	0
HDAC7	51564	broad.mit.edu	37	12	48188615	48188615	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:48188615G>A	uc010slo.1	-	12	1581	c.1386C>T	c.(1384-1386)GGC>GGT	p.G462G	HDAC7_uc009zku.2_5'Flank|HDAC7_uc001rqe.2_5'Flank|HDAC7_uc001rqj.3_Silent_p.G425G|HDAC7_uc001rqk.3_Silent_p.G445G	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	423	Transcription repression 2 (By similarity).				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		TGTGCTCCAGGCCATCGTCCA	0.687													28	63					0	0	0.005443	0	0
ADCY6	112	broad.mit.edu	37	12	49166193	49166193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:49166193C>T	uc001rsh.3	-	17	3332	c.2672G>A	c.(2671-2673)AGG>AAG	p.R891K	ADCY6_uc001rsj.3_Missense_Mutation_p.R891K|ADCY6_uc001rsi.3_Missense_Mutation_p.R838K|ADCY6_uc010slw.1_Missense_Mutation_p.R122K	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	891					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						GAGGGCCACCCTCCCTGCAGC	0.557													19	32					0	0	0.012319	0	0
MLL2	8085	broad.mit.edu	37	12	49421009	49421009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:49421009G>A	uc001rta.3	-	48	14740	c.14740C>T	c.(14740-14742)CCC>TCC	p.P4914S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4914	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGCGGGGAGGGTTCTTCAGGA	0.632			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			76	100					0	0	0.014410	0	0
ACCN2	41	broad.mit.edu	37	12	50474934	50474934	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:50474934G>A	uc001rvw.2	+	10	1576	c.1347G>A	c.(1345-1347)ACG>ACA	p.T449T	ACCN2_uc001rvv.2_Silent_p.T495T|ACCN2_uc009zln.2_Silent_p.T240T|ACCN2_uc009zlo.2_Silent_p.T449T	NM_001095	NP_001086	P78348	ACCN2_HUMAN	amiloride-sensitive cation channel 2, neuronal	449	Helical; (By similarity).				calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(1)	1					Amiloride(DB00594)	GCATCCTCACGGTGCTGGAGC	0.731													11	21					0	0	0.003163	0	0
BIN2	51411	broad.mit.edu	37	12	51689613	51689613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:51689613G>A	uc001ryg.2	-	9	780	c.728C>T	c.(727-729)TCC>TTC	p.S243F	BIN2_uc009zlz.2_Missense_Mutation_p.S211F|BIN2_uc001ryh.2_Missense_Mutation_p.S119F|BIN2_uc010sng.1_Missense_Mutation_p.S217F	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	243	BAR.					cytoplasm	protein binding			ovary(1)	1						GACTTTATTGGAATGTTGCTT	0.458													83	130					0	0	0.014410	0	0
ANKRD33	341405	broad.mit.edu	37	12	52283229	52283229	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:52283229G>A	uc001rzf.3	+	4	774	c.195G>A	c.(193-195)GGG>GGA	p.G65G	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Silent_p.G200G|ANKRD33_uc001rze.2_Silent_p.G65G|ANKRD33_uc001rzg.3_5'UTR|ANKRD33_uc001rzi.3_Silent_p.G65G	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	65	ANK 2.										0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		ACCAGCGGGGGCTCACGGCGT	0.652													20	32					0	0	0.014323	0	0
ACVRL1	94	broad.mit.edu	37	12	52312866	52312866	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:52312866C>T	uc001rzj.2	+	9	1627	c.1344C>T	c.(1342-1344)ACC>ACT	p.T448T	ACVRL1_uc001rzk.2_Silent_p.T448T|ACVRL1_uc010snm.1_Silent_p.T274T	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	448	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	ATCAGCAGACCCCCACCATCC	0.602									Hereditary_Hemorrhagic_Telangiectasia				18	36					0	0	0.008871	0	0
TENC1	23371	broad.mit.edu	37	12	53453118	53453118	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:53453118G>T	uc001sbp.2	+	18	1828	c.1693G>T	c.(1693-1695)GAT>TAT	p.D565Y	TENC1_uc001sbl.2_Missense_Mutation_p.D441Y|TENC1_uc001sbn.2_Missense_Mutation_p.D575Y|TENC1_uc001sbq.2_Missense_Mutation_p.D60Y|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Missense_Mutation_p.D60Y|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	565					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						GGCCATCCTAGATGACGAAGA	0.697													8	9					5.4927e-09	6.03927e-09	0.004482	1	0
CALCOCO1	57658	broad.mit.edu	37	12	54109721	54109721	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:54109721G>A	uc001sef.2	-	9	1260	c.1116C>T	c.(1114-1116)GCC>GCT	p.A372A	CALCOCO1_uc001see.2_5'Flank|CALCOCO1_uc010som.1_Silent_p.A287A|CALCOCO1_uc010son.1_Silent_p.A249A|CALCOCO1_uc001seh.2_Silent_p.A372A|CALCOCO1_uc009znd.2_Silent_p.A372A|CALCOCO1_uc001seg.2_Silent_p.A197A|CALCOCO1_uc010soo.1_Silent_p.A365A	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	372	Poly-Ala.				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						TGCGGTCCCTGGCTGCTGCTG	0.597													19	37					0	0	0.006122	0	0
NFE2	4778	broad.mit.edu	37	12	54686323	54686323	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:54686323C>T	uc009znk.2	-	2	1467	c.957G>A	c.(955-957)CTG>CTA	p.L319L	NFE2_uc001sfq.2_Silent_p.L319L|NFE2_uc001sfr.3_Silent_p.L319L|NFE2_uc009znl.2_Silent_p.L319L	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	319	Leucine-zipper.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						GCATGACCTCCAGGGTCCGGT	0.612													22	37					0	0	0.002780	0	0
DCD	117159	broad.mit.edu	37	12	55039462	55039462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:55039462C>T	uc001sgj.2	-	3	189	c.127G>A	c.(127-129)GAA>AAA	p.E43K	DCD_uc009znt.2_Missense_Mutation_p.E43K|DCD_uc009znu.2_RNA	NM_053283	NP_444513	P81605	DCD_HUMAN	dermcidin preproprotein	43					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			ovary(1)	1		Myeloproliferative disorder(1001;0.0255)				CCTGCATTTTCCTTTTGAGCT	0.517													40	77					0	0	0.014410	0	0
OR9K2	441639	broad.mit.edu	37	12	55523706	55523706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:55523706C>T	uc010spe.1	+	1	154	c.154C>T	c.(154-156)CTC>TTC	p.L52F		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	52	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CCACATTCTCCTCTTCCTGCT	0.453													46	102					0	0	0.014410	0	0
OR6C65	403282	broad.mit.edu	37	12	55794506	55794506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:55794506C>T	uc010spl.1	+	1	194	c.194C>T	c.(193-195)TCT>TTT	p.S65F		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGAATTTCTCTTTCTTAGAA	0.333													19	29					0	0	0.006122	0	0
OR6C65	403282	broad.mit.edu	37	12	55794584	55794584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:55794584C>T	uc010spl.1	+	1	272	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACAACCATTTCCTATAATGCT	0.353													33	59					0	0	0.004289	0	0
OR6C2	341416	broad.mit.edu	37	12	55846322	55846322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:55846322G>A	uc001sgz.1	+	1	325	c.325G>A	c.(325-327)GAA>AAA	p.E109K		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGAGCAACAGAATTTTTTCT	0.403													59	77					0	0	0.014410	0	0
OR6C4	341418	broad.mit.edu	37	12	55945641	55945641	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:55945641C>T	uc010spp.1	+	1	631	c.631C>T	c.(631-633)CTG>TTG	p.L211L		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TACTCTGGTGCTGGTGACACT	0.493													31	45					0	0	0.008361	0	0
SILV	6490	broad.mit.edu	37	12	56349272	56349273	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:56349272_56349273CC>TT	uc001sip.2	-	9	1768_1769	c.1737_1738GG>AA	c.(1735-1740)GTGGTC>GTAATC	p.V580I	SILV_uc001siq.2_Missense_Mutation_p.V580I|SILV_uc010spx.1_Missense_Mutation_p.V494I|SILV_uc001sir.2_Missense_Mutation_p.V580I	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	580	Lumenal (Potential).				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						TGGGTGCTGACCACTGCCAGGC	0.569													19	46					0	0	0.004672	0	0
SILV	6490	broad.mit.edu	37	12	56352320	56352320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:56352320C>T	uc001sip.2	-	4	437	c.406G>A	c.(406-408)GGA>AGA	p.G136R	SILV_uc001siq.2_Missense_Mutation_p.G136R|SILV_uc010spx.1_Missense_Mutation_p.G50R|SILV_uc001sir.2_Missense_Mutation_p.G136R	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	136					melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						GGGCAAGGTCCACCATCAGGG	0.522													27	32					0	0	0.004656	0	0
SPRYD4	283377	broad.mit.edu	37	12	56862919	56862919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:56862919C>T	uc001sli.3	+	2	257	c.182C>T	c.(181-183)CCC>CTC	p.P61L	SPRYD4_uc010sqo.1_Missense_Mutation_p.P61L	NM_207344	NP_997227	Q8WW59	SPRY4_HUMAN	SPRY domain containing 4	61	B30.2/SPRY.					nucleus					0						GGATTGGAGCCCACCAAGGTG	0.562													36	68					0	0	0.004289	0	0
RBMS2	5939	broad.mit.edu	37	12	56980652	56980652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:56980652C>T	uc001sln.2	+	10	1092	c.893C>T	c.(892-894)CCT>CTT	p.P298L	RBMS2_uc010sqp.1_Missense_Mutation_p.P153L|RBMS2_uc010sqq.1_Missense_Mutation_p.P173L|RBMS2_uc009zou.2_Missense_Mutation_p.P55L	NM_002898	NP_002889	Q15434	RBMS2_HUMAN	RNA binding motif, single stranded interacting	298					RNA processing	nucleus	nucleotide binding|RNA binding				0						CAGACATCTCCTCTACAAGTA	0.383													51	91					0	0	0.014410	0	0
MYO1A	4640	broad.mit.edu	37	12	57431350	57431350	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:57431350G>A	uc001smw.3	-	19	2280	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	MYO1A_uc010sqz.1_Silent_p.F517F|MYO1A_uc009zpd.2_Silent_p.F679F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	679	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCTTCTAATGAAGATCTTTG	0.537													108	231					0	0	0.014410	0	0
MYO1A	4640	broad.mit.edu	37	12	57441875	57441875	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:57441875T>A	uc001smw.3	-	3	371	c.128A>T	c.(127-129)AAT>ATT	p.N43I	MYO1A_uc010sqz.1_5'Flank|MYO1A_uc009zpd.2_Missense_Mutation_p.N43I	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	43	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GATCACCACATTCCCAATGTA	0.502													20	35					0	0	0.002780	0	0
STAT6	6778	broad.mit.edu	37	12	57499302	57499302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:57499302C>T	uc009zpe.2	-	8	1012	c.761G>A	c.(760-762)CGG>CAG	p.R254Q	STAT6_uc009zpf.2_Missense_Mutation_p.R254Q|STAT6_uc001sna.2_Missense_Mutation_p.R254Q|STAT6_uc010srb.1_Missense_Mutation_p.R144Q|STAT6_uc010src.1_Missense_Mutation_p.R144Q|STAT6_uc010srd.1_Missense_Mutation_p.R144Q|STAT6_uc009zpg.2_Missense_Mutation_p.R303Q	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	254					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						CAGCGATGCCCGGGTCTTGGG	0.617													15	33					0	0	0.003163	0	0
R3HDM2	22864	broad.mit.edu	37	12	57660556	57660556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:57660556G>A	uc009zpm.1	-	17	2082	c.2047C>T	c.(2047-2049)CCC>TCC	p.P683S	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.P378S|R3HDM2_uc001snr.2_Missense_Mutation_p.P410S|R3HDM2_uc001sns.2_Missense_Mutation_p.P683S|R3HDM2_uc001snt.2_Missense_Mutation_p.P697S|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	683	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						CAGGGAGAGGGAGACTGAGGC	0.547													9	27					0	0	0.004482	0	0
INHBC	3626	broad.mit.edu	37	12	57843515	57843515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:57843515C>T	uc001snv.1	+	2	896	c.769C>T	c.(769-771)CGT>TGT	p.R257C		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	257					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TGTGGACTTCCGTGAGATTGG	0.562													18	41					0	0	0.006122	0	0
KIF5A	3798	broad.mit.edu	37	12	57971793	57971793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:57971793C>T	uc001sor.1	+	22	2571	c.2363C>T	c.(2362-2364)GCC>GTC	p.A788V	KIF5A_uc010srr.1_Missense_Mutation_p.A699V	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	788					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TCTTTCCAGGCCCGGGAACTC	0.483													22	57					0	0	0.002780	0	0
OS9	10956	broad.mit.edu	37	12	58113910	58113910	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:58113910C>T	uc001spj.2	+	13	1688	c.1629C>T	c.(1627-1629)GTC>GTT	p.V543V	OS9_uc010srx.1_Intron|OS9_uc001spk.2_Silent_p.V528V|OS9_uc001spl.2_Intron|OS9_uc001spm.2_Intron|OS9_uc001spn.2_Intron|OS9_uc010sry.1_Intron|OS9_uc010srz.1_Intron	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	543					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GAGTCCGGGTCCGGGTCACCA	0.577													34	76					0	0	0.006230	0	0
LOC100130776	100130776	broad.mit.edu	37	12	58121399	58121399	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:58121399G>A	uc001sps.3	+	2	791	c.624G>A	c.(622-624)CCG>CCA	p.P208P	AGAP2_uc001spo.1_5'Flank|AGAP2_uc001spq.2_Intron|AGAP2_uc001spp.2_Intron|AGAP2_uc001spr.2_Intron	NR_027032				SubName: Full=cDNA FLJ59598; SubName: Full=HCG2014417, isoform CRA_a;												0						GCTCCCAGCCGGGCAGCACAG	0.657													3	9					0	0	0.004672	0	0
FAM19A2	338811	broad.mit.edu	37	12	62147501	62147501	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:62147501A>G	uc001sqw.2	-	4	1799	c.286T>C	c.(286-288)TGC>CGC	p.C96R	FAM19A2_uc001sqv.2_RNA|FAM19A2_uc001sqx.2_Missense_Mutation_p.C96R|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	96						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		TGCATATGGCACCACCATTTC	0.393													37	58					0	0	0.009718	0	0
FAM19A2	338811	broad.mit.edu	37	12	62261121	62261121	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:62261121G>T	uc001sqw.2	-	2	1599	c.86C>A	c.(85-87)TCC>TAC	p.S29Y	FAM19A2_uc001sqx.2_Missense_Mutation_p.S29Y|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	29						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		GTTTGCACTGGATACAACTTT	0.333													28	52					4.31634e-10	4.75904e-10	0.012213	1	0
C12orf56	115749	broad.mit.edu	37	12	64668746	64668746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:64668746C>T	uc001ssa.3	-	9	1039	c.1039G>A	c.(1039-1041)GGA>AGA	p.G347R	uc001srx.2_Intron|C12orf56_uc001sry.2_Missense_Mutation_p.G89R|C12orf56_uc001srz.2_5'UTR	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	510											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		GATCCCAATCCGAGATTTCCC	0.343													30	67					0	0	0.008361	0	0
XPOT	11260	broad.mit.edu	37	12	64828638	64828638	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:64828638C>T	uc001ssb.2	+	21	3060	c.2634C>T	c.(2632-2634)TTC>TTT	p.F878F		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	878	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		CCGCATGTTTCCTAGCACCTT	0.378													33	63					0	0	0.006230	0	0
CPM	1368	broad.mit.edu	37	12	69279631	69279631	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:69279631T>C	uc001sup.2	-	3	260	c.199A>G	c.(199-201)AAG>GAG	p.K67E	CPM_uc001sur.2_Missense_Mutation_p.K67E|CPM_uc001suq.2_Missense_Mutation_p.K67E	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	67					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			CTGTGTTCCTTTGGAAACCGC	0.403													52	89					0	0	0.014410	0	0
LRRC10	376132	broad.mit.edu	37	12	70003895	70003895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:70003895C>T	uc001svc.2	-	1	1048	c.724G>A	c.(724-726)GAG>AAG	p.E242K		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	242						nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GGCGTCTCCTCTGCCCATCTC	0.592													26	39					0	0	0.004656	0	0
RAB3IP	117177	broad.mit.edu	37	12	70194082	70194082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:70194082G>A	uc001svp.2	+	7	1477	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N	RAB3IP_uc001svm.2_Missense_Mutation_p.D328N|RAB3IP_uc001svn.2_Missense_Mutation_p.D328N|RAB3IP_uc001svo.2_Intron|RAB3IP_uc001svq.2_Missense_Mutation_p.D344N|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_Intron|RAB3IP_uc001svt.2_Missense_Mutation_p.D122N	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	344					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			CTACCAGGAAGATATCTTTCC	0.333													16	25					0	0	0.003163	0	0
PTPRB	5787	broad.mit.edu	37	12	70956662	70956662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:70956662C>T	uc001swb.3	-	14	3506	c.3476G>A	c.(3475-3477)GGG>GAG	p.G1159E	PTPRB_uc010sto.1_Missense_Mutation_p.G1069E|PTPRB_uc010stp.1_Missense_Mutation_p.G1069E|PTPRB_uc001swc.3_Missense_Mutation_p.G1377E|PTPRB_uc001swa.3_Missense_Mutation_p.G1289E|PTPRB_uc001swd.3_Missense_Mutation_p.G1376E|PTPRB_uc009zrr.1_Missense_Mutation_p.G1256E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1159	Fibronectin type-III 13.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGACAGCTCCCCACTGTGAGT	0.463													28	60					0	0	0.007291	0	0
PTPRB	5787	broad.mit.edu	37	12	70956870	70956870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:70956870C>T	uc001swb.3	-	14	3298	c.3268G>A	c.(3268-3270)GAC>AAC	p.D1090N	PTPRB_uc010sto.1_Missense_Mutation_p.D1000N|PTPRB_uc010stp.1_Missense_Mutation_p.D1000N|PTPRB_uc001swc.3_Missense_Mutation_p.D1308N|PTPRB_uc001swa.3_Missense_Mutation_p.D1220N|PTPRB_uc001swd.3_Missense_Mutation_p.D1307N|PTPRB_uc009zrr.1_Missense_Mutation_p.D1187N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1090	Fibronectin type-III 13.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATCCTCAGGTCGGTGACAGCT	0.557													4	10					0	0	0.009096	0	0
LGR5	8549	broad.mit.edu	37	12	71977724	71977724	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:71977724T>A	uc001swl.2	+	18	1982	c.1934T>A	c.(1933-1935)ATT>AAT	p.I645N	LGR5_uc001swm.2_Missense_Mutation_p.I621N|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	645	Helical; Name=3; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTTTTGTCCATTTTTGCTTCA	0.473													181	345					0	0	0.014410	0	0
TBC1D15	64786	broad.mit.edu	37	12	72314523	72314523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:72314523G>A	uc001swu.2	+	16	1738	c.1729G>A	c.(1729-1731)GAA>AAA	p.E577K	TBC1D15_uc010stt.1_Missense_Mutation_p.E546K|TBC1D15_uc001swv.2_Missense_Mutation_p.E560K|TBC1D15_uc001sww.2_Missense_Mutation_p.E309K	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	TBC1 domain family, member 15 isoform 1	555	Rab-GAP TBC.						protein binding|Rab GTPase activator activity				0						AATGTGGACCGAACTACCATG	0.343													54	124					0	0	0.014410	0	0
TRHDE	29953	broad.mit.edu	37	12	72956677	72956677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:72956677G>A	uc001sxa.2	+	9	1794	c.1764G>A	c.(1762-1764)ATG>ATA	p.M588I		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	588	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						AAGAAGTAATGGATCAGTGGA	0.303													20	81					0	0	0.014323	0	0
KCNC2	3747	broad.mit.edu	37	12	75434972	75434972	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:75434972A>G	uc009zry.2	-	4	1814	c.1795T>C	c.(1795-1797)TAT>CAT	p.Y599H	KCNC2_uc001sxe.2_3'UTR|KCNC2_uc001sxf.2_3'UTR	NM_139136	NP_631874	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	Error:Variant_position_missing_in_Q96PR1_after_alignment					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						AATCCATGATAAATTCTGTAC	0.378													15	48					0	0	0.004007	0	0
E2F7	144455	broad.mit.edu	37	12	77417955	77417955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:77417955G>A	uc001sym.3	-	13	2812	c.2576C>T	c.(2575-2577)CCA>CTA	p.P859L	E2F7_uc009zse.2_Silent_p.S204S	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	859					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						GGGGGTCACTGGAACTGGTGA	0.458													9	31					0	0	0.008291	0	0
NAV3	89795	broad.mit.edu	37	12	78513580	78513580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:78513580G>A	uc001syp.2	+	15	3777	c.3604G>A	c.(3604-3606)GAA>AAA	p.E1202K	NAV3_uc001syo.2_Missense_Mutation_p.E1202K|NAV3_uc010sub.1_Missense_Mutation_p.E702K|NAV3_uc009zsf.2_Missense_Mutation_p.E210K	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1202	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAAGGAAAAGGAAAAAGTAGC	0.527										HNSCC(70;0.22)			21	54					0	0	0.008871	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80239088	80239088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:80239088G>A	uc001syz.2	-	3	748	c.481C>T	c.(481-483)CGG>TGG	p.R161W	PPP1R12A_uc010suc.1_Missense_Mutation_p.R74W|PPP1R12A_uc001sza.2_Missense_Mutation_p.R161W|PPP1R12A_uc010sud.1_Missense_Mutation_p.R161W|PPP1R12A_uc001szb.2_Missense_Mutation_p.R161W|PPP1R12A_uc001szc.2_Missense_Mutation_p.R161W	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	161	ANK 4.					contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						TTACCTTGCCGATTAACTTCA	0.373													14	15					0	0	0.001855	0	0
ACSS3	79611	broad.mit.edu	37	12	81613831	81613831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:81613831G>A	uc001szl.1	+	11	1581	c.1490G>A	c.(1489-1491)CGG>CAG	p.R497Q	ACSS3_uc001szm.1_Missense_Mutation_p.R496Q|ACSS3_uc001szn.1_Missense_Mutation_p.R179Q	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	497						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CTGAAGGCTCGGTGTTTAGGA	0.269													18	41					0	0	0.008871	0	0
PPFIA2	8499	broad.mit.edu	37	12	81734917	81734917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:81734917G>A	uc001szo.1	-	20	2494	c.2333C>T	c.(2332-2334)ACC>ATC	p.T778I	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	704										ovary(3)|lung(2)|pancreas(1)	6						GGCTCTAGGGGTAGGAGGAGG	0.448													36	38					0	0	0.013726	0	0
PPFIA2	8499	broad.mit.edu	37	12	81751925	81751925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:81751925C>T	uc001szo.1	-	16	1870	c.1709G>A	c.(1708-1710)AGA>AAA	p.R570K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	496										ovary(3)|lung(2)|pancreas(1)	6						TTTAGTTGTTCTGTAATCAGA	0.408													4	13					0	0	0.000602	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85431957	85431957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:85431957G>A	uc001tac.2	+	2	114	c.3G>A	c.(1-3)ATG>ATA	p.M1I	LRRIQ1_uc001tab.1_Missense_Mutation_p.M1I|TSPAN19_uc009zsj.2_5'Flank|LRRIQ1_uc001taa.1_Missense_Mutation_p.M1I|LRRIQ1_uc001tad.2_5'Flank	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GAAGAATAATGGACGATGATG	0.333													10	18					0	0	0.008291	0	0
RASSF9	9182	broad.mit.edu	37	12	86199585	86199585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:86199585C>T	uc001taf.1	-	2	542	c.203G>A	c.(202-204)CGA>CAA	p.R68Q		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	68	Ras-associating.				endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						CAGAAGAAATCGTTTCTCTCC	0.483													28	79					0	0	0.009535	0	0
C12orf50	160419	broad.mit.edu	37	12	88390364	88390364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:88390364C>T	uc001tam.1	-	5	517	c.349G>A	c.(349-351)GAG>AAG	p.E117K	C12orf50_uc001tan.2_Missense_Mutation_p.E171K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	117										skin(2)|ovary(1)	3						TAACACATCTCCTTTATTGCT	0.284													15	32					0	0	0.003163	0	0
C12orf50	160419	broad.mit.edu	37	12	88391931	88391931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:88391931G>A	uc001tam.1	-	4	338	c.170C>T	c.(169-171)CCA>CTA	p.P57L	C12orf50_uc001tan.2_Missense_Mutation_p.P111L	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	57										skin(2)|ovary(1)	3						GGACTGGAGTGGAATTCCTTC	0.368													8	14					0	0	0.008291	0	0
C12orf50	160419	broad.mit.edu	37	12	88391963	88391963	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:88391963G>A	uc001tam.1	-	4	306	c.138C>T	c.(136-138)ATC>ATT	p.I46I	C12orf50_uc001tan.2_Silent_p.I100I	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	46										skin(2)|ovary(1)	3						TCTGTAGTGTGATATCTGCAG	0.373													6	20					0	0	0.001984	0	0
KITLG	4254	broad.mit.edu	37	12	88910131	88910131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:88910131G>A	uc001tav.2	-	5	683	c.500C>T	c.(499-501)TCA>TTA	p.S167L	KITLG_uc009zsn.2_Intron|KITLG_uc001taw.2_Missense_Mutation_p.S167L|KITLG_uc009zso.1_Intron	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	167	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						ACTTAATGTTGAAGAAACCAC	0.348									Testicular_Cancer_Familial_Clustering_of				78	133					0	0	0.014410	0	0
ATP2B1	490	broad.mit.edu	37	12	89992980	89992980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:89992980C>T	uc001tbh.2	-	19	3446	c.3265G>A	c.(3265-3267)GAT>AAT	p.D1089N	ATP2B1_uc001tbg.2_Missense_Mutation_p.D1089N|ATP2B1_uc009zsr.2_RNA|ATP2B1_uc001tbf.2_Missense_Mutation_p.D723N	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	1089	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TCTTCAACATCCTCTGCTAAT	0.438													26	54					0	0	0.003954	0	0
EPYC	1833	broad.mit.edu	37	12	91396222	91396222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:91396222C>T	uc001tbk.2	-	2	214	c.121G>A	c.(121-123)GAT>AAT	p.D41N		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	41					female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						TACAAATTATCCAGGTCTTCT	0.403													38	78					0	0	0.006230	0	0
KERA	11081	broad.mit.edu	37	12	91445191	91445191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:91445191C>T	uc001tbl.2	-	3	1610	c.991G>A	c.(991-993)GAA>AAA	p.E331K		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	331					response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						GGTTTGATTTCATTTCCATCC	0.418													10	41					0	0	0.008291	0	0
LUM	4060	broad.mit.edu	37	12	91502583	91502583	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:91502583C>T	uc001tbm.2	-	2	563	c.174G>A	c.(172-174)TTG>TTA	p.L58L	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	58	LRRNT.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						GTACACTTTTCAATTTCAGCT	0.413													11	42					0	0	0.001855	0	0
LUM	4060	broad.mit.edu	37	12	91502721	91502721	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:91502721C>T	uc001tbm.2	-	2	425	c.36G>A	c.(34-36)TTG>TTA	p.L12L	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	12					collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						TACCACCAATCAATGCCAGGA	0.343													10	22					0	0	0.008291	0	0
USP44	84101	broad.mit.edu	37	12	95914825	95914825	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:95914825C>T	uc001teg.2	-	5	2031	c.1887G>A	c.(1885-1887)GGG>GGA	p.G629G	USP44_uc001teh.2_Silent_p.G629G|USP44_uc009zte.2_Silent_p.G626G	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	629					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						CAAATCCTTTCCCATGGTGCA	0.458													52	78					0	0	0.014410	0	0
C12orf63	374467	broad.mit.edu	37	12	97150262	97150262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:97150262G>A	uc001tet.1	+	24	3220	c.3142G>A	c.(3142-3144)GAA>AAA	p.E1048K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1048										skin(6)|ovary(1)	7						AATACTAATGGAAGAGAAATC	0.303													12	25					0	0	0.002450	0	0
SLC25A3	5250	broad.mit.edu	37	12	98987795	98987795	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:98987795C>T	uc001tfo.2	+	2	159	c.39C>T	c.(37-39)CCC>CCT	p.P13P	SLC25A3_uc001tfm.2_Silent_p.P13P|SLC25A3_uc001tfn.2_Silent_p.P13P|SLC25A3_uc001tfp.2_Silent_p.P13P|SLC25A3_uc001tfq.2_5'UTR|SLC25A3_uc001tfr.2_Silent_p.P13P|SLC25A3_uc001tfs.2_5'UTR|SLC25A3_uc009ztn.2_Silent_p.P13P|SLC25A3_uc001tft.2_Silent_p.P13P	NM_005888	NP_005879	Q00325	MPCP_HUMAN	solute carrier family 25 member 3 isoform a	13					generation of precursor metabolites and energy	integral to plasma membrane|mitochondrial inner membrane	phosphate carrier activity|symporter activity				0		Lung NSC(355;4.08e-05)|Breast(359;0.00191)|Colorectal(145;0.00205)|Myeloproliferative disorder(1001;0.0255)		GBM - Glioblastoma multiforme(134;1.36e-23)|BRCA - Breast invasive adenocarcinoma(302;0.000115)		GGGCGAACCCCTTCAACACGC	0.682													11	27					0	0	0.013537	0	0
ANKS1B	56899	broad.mit.edu	37	12	99478708	99478708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:99478708G>A	uc001tge.1	-	16	3037	c.2620C>T	c.(2620-2622)CCA>TCA	p.P874S	ANKS1B_uc001tgf.1_Missense_Mutation_p.P450S|ANKS1B_uc001tgk.2_Missense_Mutation_p.P171S|ANKS1B_uc001tgd.1_Missense_Mutation_p.P100S|ANKS1B_uc001tgi.2_Missense_Mutation_p.P100S|ANKS1B_uc009ztr.2_Missense_Mutation_p.P100S|ANKS1B_uc001tgj.2_Missense_Mutation_p.P100S|ANKS1B_uc001tgg.3_Missense_Mutation_p.P43S|ANKS1B_uc010svg.1_Missense_Mutation_p.P69S|ANKS1B_uc009zts.1_Missense_Mutation_p.P100S|ANKS1B_uc001tgm.1_Missense_Mutation_p.P100S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	874	SAM 1.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CTCACCTTTGGAAGGAGCTGG	0.418													9	14					0	0	0.006214	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100441971	100441971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:100441971G>A	uc001tgq.2	-	18	3951	c.3722C>T	c.(3721-3723)TCC>TTC	p.S1241F	UHRF1BP1L_uc001tgp.2_Missense_Mutation_p.S891F	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	1241										ovary(2)	2						TTTCTGATCGGAACCTAAGGA	0.318													10	45					0	0	0.013537	0	0
SLC5A8	160728	broad.mit.edu	37	12	101577958	101577958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:101577958C>T	uc001thz.3	-	8	1396	c.1006G>A	c.(1006-1008)GGA>AGA	p.G336R		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	336	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						CCAGGAAGTCCTGGATAATCT	0.353													19	30					0	0	0.012319	0	0
SPIC	121599	broad.mit.edu	37	12	101876674	101876674	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:101876674A>G	uc001tid.2	+	5	474	c.315A>G	c.(313-315)GGA>GGG	p.G105G	SPIC_uc009zua.2_5'UTR|SPIC_uc010svp.1_Silent_p.G104G	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	105						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						AAAAGGGGGGAAAAGGTACGT	0.393													34	60					0	0	0.012213	0	0
MYBPC1	4604	broad.mit.edu	37	12	102054987	102054987	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:102054987G>A	uc001tii.2	+	18	2006	c.1904G>A	c.(1903-1905)TGG>TAG	p.W635*	MYBPC1_uc001tig.2_Nonsense_Mutation_p.W660*|MYBPC1_uc010svq.1_Nonsense_Mutation_p.W622*|MYBPC1_uc001tih.2_Nonsense_Mutation_p.W660*|MYBPC1_uc001tij.2_Nonsense_Mutation_p.W635*|MYBPC1_uc010svr.1_Nonsense_Mutation_p.W635*|MYBPC1_uc010svs.1_Nonsense_Mutation_p.W635*|MYBPC1_uc010svt.1_Nonsense_Mutation_p.W623*|MYBPC1_uc010svu.1_Nonsense_Mutation_p.W616*|MYBPC1_uc001tik.2_Nonsense_Mutation_p.W609*	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	635	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						GGAGATGACTGGTGTATCATG	0.493													17	32					0	0	0.007413	0	0
STAB2	55576	broad.mit.edu	37	12	104046444	104046444	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:104046444C>T	uc001tjw.2	+	12	1554	c.1368C>T	c.(1366-1368)ACC>ACT	p.T456T		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	456	Extracellular (Potential).|FAS1 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGTTCTACACCTTGACTGGAA	0.398													13	35					0	0	0.004007	0	0
STAB2	55576	broad.mit.edu	37	12	104157375	104157375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:104157375G>A	uc001tjw.2	+	68	7780	c.7594G>A	c.(7594-7596)GAC>AAC	p.D2532N	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2532	Cytoplasmic (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ACCTTCCTACGACCCCTTCAC	0.478													66	146					0	0	0.014410	0	0
GLT8D2	83468	broad.mit.edu	37	12	104408855	104408855	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:104408855G>A	uc001tkh.1	-	4	454	c.48C>T	c.(46-48)ATC>ATT	p.I16I	GLT8D2_uc001tki.1_Silent_p.I16I	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	16	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						AGAGGGTCACGATCAGAAGGA	0.418													11	24					0	0	0.013537	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105464556	105464556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:105464556G>A	uc001tlc.2	-	3	347	c.220C>T	c.(220-222)CCT>TCT	p.P74S	ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	74	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						TTGAACACAGGGGTCCCATCT	0.413													38	69					0	0	0.007835	0	0
APPL2	55198	broad.mit.edu	37	12	105600949	105600949	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:105600949G>C	uc001tlf.1	-	8	729	c.511C>G	c.(511-513)CGG>GGG	p.R171G	APPL2_uc010swt.1_Missense_Mutation_p.R128G|APPL2_uc001tlg.1_5'UTR|APPL2_uc010swu.1_Missense_Mutation_p.R177G|APPL2_uc009zuq.2_Missense_Mutation_p.R128G	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	171	Required for RAB5A binding (By similarity).				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGCTTCCGCCGGGCCGCGGCC	0.517													25	46					0	0	0.005443	0	0
CMKLR1	1240	broad.mit.edu	37	12	108685807	108685807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:108685807C>T	uc009zuw.2	-	3	1124	c.933G>A	c.(931-933)ATG>ATA	p.M311I	CMKLR1_uc001tmw.2_Missense_Mutation_p.M311I|CMKLR1_uc001tmv.2_Missense_Mutation_p.M309I|CMKLR1_uc009zuv.2_Missense_Mutation_p.M311I	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	311	Helical; Name=7; (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						GAATGGGGTTCATGCAGCTGT	0.542													12	61					0	0	0.001855	0	0
DAO	1610	broad.mit.edu	37	12	109284019	109284019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:109284019G>A	uc001tnr.3	+	5	575	c.422G>A	c.(421-423)GGA>GAA	p.G141E	DAO_uc001tnq.3_Intron|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	141					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						ATTCTGGAGGGAAAGAACTAT	0.408													30	46					0	0	0.012213	0	0
TRPV4	59341	broad.mit.edu	37	12	110238505	110238505	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:110238505G>A	uc001tpj.1	-	4	866	c.771C>T	c.(769-771)CTC>CTT	p.L257L	TRPV4_uc001tpg.1_Silent_p.L223L|TRPV4_uc001tph.1_Intron|TRPV4_uc001tpi.1_Intron|TRPV4_uc001tpk.1_Silent_p.L257L|TRPV4_uc001tpl.1_Silent_p.L257L	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	257	Cytoplasmic (Potential).|ANK 1.				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CCTGGGCCACGAGAAGTTCCA	0.637													25	33					0	0	0.005443	0	0
NAA25	80018	broad.mit.edu	37	12	112506773	112506773	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:112506773G>A	uc001ttm.2	-	11	1080	c.1060C>T	c.(1060-1062)CAG>TAG	p.Q354*	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Nonsense_Mutation_p.Q326*|NAA25_uc009zwa.1_Nonsense_Mutation_p.Q354*	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	354						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TTAAAATACTGGAACATTAAT	0.343													23	39					0	0	0.014323	0	0
NAA25	80018	broad.mit.edu	37	12	112516049	112516049	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:112516049G>A	uc001ttm.2	-	7	627	c.607C>T	c.(607-609)CTG>TTG	p.L203L	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Silent_p.L175L|NAA25_uc009zwa.1_Silent_p.L203L	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	203						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						AAACGTTCCAGGATCATATAA	0.303													34	62					0	0	0.006999	0	0
C12orf51	283450	broad.mit.edu	37	12	112622317	112622317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:112622317C>T	uc009zwc.2	-	54	9205	c.9187G>A	c.(9187-9189)GCC>ACC	p.A3063T		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GAGGCGGAGGCGCTGATGCTC	0.662													7	14					0	0	0.003080	0	0
SLC24A6	80024	broad.mit.edu	37	12	113758889	113758889	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:113758889G>A	uc001tvc.2	-	4	544	c.334C>T	c.(334-336)CTG>TTG	p.L112L	SLC24A6_uc001tvd.1_Silent_p.L112L|SLC24A6_uc001tuz.2_5'Flank|SLC24A6_uc001tva.2_5'Flank|SLC24A6_uc001tvb.2_5'Flank	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	112	Helical; Name=1; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						CCCAGAATCAGAAACAGGTAG	0.617													13	16					0	0	0.013537	0	0
TBX5	6910	broad.mit.edu	37	12	114793500	114793500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:114793500G>A	uc001tvo.2	-	9	1889	c.1394C>T	c.(1393-1395)CCT>CTT	p.P465L	TBX5_uc001tvp.2_Missense_Mutation_p.P465L|TBX5_uc001tvq.2_Missense_Mutation_p.P415L	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	465					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		CCTGACCACAGGCTGGTGGGC	0.657													12	20					0	0	0.002450	0	0
MAP1LC3B2	643246	broad.mit.edu	37	12	117013840	117013840	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:117013840C>T	uc009zwk.1	+	2	247	c.93C>T	c.(91-93)ATC>ATT	p.I31I		NM_001085481	NP_001078950	A6NCE7	MP3B2_HUMAN	microtubule-associated protein 1 light chain 3	31					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|endomembrane system|microtubule					0						CAACCAAAATCCCGGTGATAA	0.483													33	72					0	0	0.003271	0	0
CCDC60	160777	broad.mit.edu	37	12	119968818	119968818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:119968818G>A	uc001txe.2	+	13	1966	c.1501G>A	c.(1501-1503)GAT>AAT	p.D501N	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	501										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGTGCTGCAGGATCTGAGGAT	0.527													41	59					0	0	0.013114	0	0
KNTC1	9735	broad.mit.edu	37	12	123102893	123102893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:123102893C>T	uc001ucv.2	+	58	6197	c.6034C>T	c.(6034-6036)CCC>TCC	p.P2012S	KNTC1_uc010taf.1_Missense_Mutation_p.P937S	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	2012					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TTCACAGGTTCCCTACTTCAG	0.353													10	20					0	0	0.008291	0	0
NCOR2	9612	broad.mit.edu	37	12	124968247	124968247	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:124968247G>A	uc010tba.1	-	3	423	c.306C>T	c.(304-306)TTC>TTT	p.F102F	NCOR2_uc010tay.1_Silent_p.F102F|NCOR2_uc010taz.1_Silent_p.F102F|NCOR2_uc010tbb.1_Silent_p.F102F|NCOR2_uc010tbc.1_Silent_p.F102F|NCOR2_uc001ugj.1_Silent_p.F102F|NCOR2_uc001ugk.1_Silent_p.F102F|uc001ugl.2_RNA	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	102					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		TGCTTTCAATGAACTCCATCT	0.642													6	19					0	0	0.003080	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138808	126138808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:126138808G>A	uc001uhe.1	+	9	2797	c.2789G>A	c.(2788-2790)AGG>AAG	p.R930K	TMEM132B_uc001uhf.1_Missense_Mutation_p.R442K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	930	Cytoplasmic (Potential).					integral to membrane		p.R930T(1)		skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGACACAAAAGGTTTGCTGTG	0.502													49	80					0	0	0.014410	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558431	129558431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:129558431C>T	uc009zyl.1	-	9	3617	c.3289G>A	c.(3289-3291)GAA>AAA	p.E1097K	TMEM132D_uc001uia.2_Missense_Mutation_p.E635K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	1097	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TACACATTTTCATGTAACCTC	0.493													35	72					0	0	0.006999	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558659	129558659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:129558659C>T	uc009zyl.1	-	9	3389	c.3061G>A	c.(3061-3063)GGA>AGA	p.G1021R	TMEM132D_uc001uia.2_Missense_Mutation_p.G559R	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	1021	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ATGATGGGTCCCAAAGGTTTG	0.458													18	84					0	0	0.006122	0	0
PIWIL1	9271	broad.mit.edu	37	12	130830393	130830393	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:130830393A>C	uc001uik.2	+	4	376	c.286A>C	c.(286-288)AAC>CAC	p.N96H	PIWIL1_uc001uij.1_Missense_Mutation_p.N96H	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	96					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TACAAGGCAGAACCTAGACCA	0.393													18	38					0	0	0.008871	0	0
EP400	57634	broad.mit.edu	37	12	132529467	132529467	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:132529467G>A	uc001ujn.2	+	36	6788	c.6753G>A	c.(6751-6753)AAG>AAA	p.K2251K	EP400_uc001ujl.2_Silent_p.K2250K|EP400_uc001ujm.2_Silent_p.K2170K	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2287					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		ACGTGAGGAAGGAGCGGAAGC	0.612													30	44					0	0	0.009535	0	0
POLE	5426	broad.mit.edu	37	12	133236096	133236096	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr12:133236096C>T	uc001uks.1	-	26	3105	c.3061_splice	c.e26-1	p.A1021_splice	POLE_uc001ukr.1_5'Flank|POLE_uc010tbq.1_Splice_Site|POLE_uc009zyu.1_Splice_Site_p.A994_splice	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon						base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TGTTGGCTGCCTAGAGAAAGA	0.527								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					24	34					0	0	0.002780	0	0
LOC284232	284232	broad.mit.edu	37	13	19415799	19415799	+	RNA	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:19415799T>C	uc010tcj.1	-	1		c.30311A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTATGACATATATTTTCTGAT	0.274													15	24					0	0	0.004007	0	0
CRYL1	51084	broad.mit.edu	37	13	21006379	21006379	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:21006379G>A	uc001une.2	-	5	574	c.495C>T	c.(493-495)GCC>GCT	p.A165A	CRYL1_uc001unf.2_Silent_p.A143A|CRYL1_uc001ung.2_Silent_p.A143A|CRYL1_uc010tcp.1_Silent_p.A39A	NM_015974	NP_057058	Q9Y2S2	CRYL1_HUMAN	lambda-crystallin	165					fatty acid metabolic process	cytosol	3-hydroxyacyl-CoA dehydrogenase activity|L-gulonate 3-dehydrogenase activity|NAD+ binding|protein homodimerization activity				0		all_cancers(29;2.27e-23)|all_epithelial(30;1.69e-19)|all_lung(29;8.29e-18)|Lung SC(185;0.0262)|Ovarian(182;0.0827)|Hepatocellular(188;0.244)		all cancers(112;6.6e-05)|Epithelial(112;0.00178)|OV - Ovarian serous cystadenocarcinoma(117;0.0169)|Lung(94;0.0215)|GBM - Glioblastoma multiforme(144;0.0402)|LUSC - Lung squamous cell carcinoma(192;0.061)		CTGTCGTAGGGGCCGTCTCCG	0.597													24	42					0	0	0.003954	0	0
SACS	26278	broad.mit.edu	37	13	23911201	23911201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:23911201C>T	uc001uon.2	-	10	7403	c.6814G>A	c.(6814-6816)GGT>AGT	p.G2272S	SACS_uc001uoo.2_Missense_Mutation_p.G2125S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2272					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GACACTGAACCACAACCTCTA	0.353													18	37					0	0	0.007413	0	0
ATP12A	479	broad.mit.edu	37	13	25283526	25283526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:25283526G>A	uc001upp.2	+	18	2705	c.2518G>A	c.(2518-2520)GAG>AAG	p.E840K	ATP12A_uc010aaa.2_Missense_Mutation_p.E846K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	840	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CTTGGCGTACGAGAAAGCTGA	0.562													15	63					0	0	0.008871	0	0
WASF3	10810	broad.mit.edu	37	13	27255355	27255355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:27255355G>A	uc001uqv.2	+	8	1106	c.881G>A	c.(880-882)AGG>AAG	p.R294K	WASF3_uc001uqw.2_Missense_Mutation_p.R291K	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	294					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		GCCTCGGCGAGGCACATGGCC	0.692													31	49					0	0	0.003271	0	0
SLC7A1	6541	broad.mit.edu	37	13	30088716	30088716	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:30088716G>A	uc001uso.2	-	13	2178	c.1791C>T	c.(1789-1791)TTC>TTT	p.F597F		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	597	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	AGTAGATGATGAAGCCTGCGG	0.637													6	13					0	0	0.001168	0	0
FRY	10129	broad.mit.edu	37	13	32721429	32721429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:32721429C>T	uc001utx.2	+	12	1686	c.1190C>T	c.(1189-1191)CCC>CTC	p.P397L	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	397					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AACAAAGATCCCAAGATGGCT	0.413													13	17					0	0	0.001855	0	0
FRY	10129	broad.mit.edu	37	13	32811634	32811634	+	Silent	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:32811634C>A	uc001utx.2	+	44	6425	c.5929C>A	c.(5929-5931)CGG>AGG	p.R1977R	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1977					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CGAACGGAGCCGGCATCAACG	0.537													11	19					6.40141e-05	7.01247e-05	0.010729	1	0
BRCA2	675	broad.mit.edu	37	13	32930714	32930715	+	Missense_Mutation	DNP	GG	AA	AA	rs120074200		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:32930714_32930715GG>AA	uc001uub.1	+	15	7812_7813	c.7585_7586GG>AA	c.(7585-7587)GGC>AAC	p.G2529N		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2529	Interaction with FANCD2.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AGCAGTAGGAGGCCAAGTTCCC	0.416			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			34	71					0	0	0.004672	0	0
NBEA	26960	broad.mit.edu	37	13	35517126	35517126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:35517126C>T	uc001uvb.2	+	2	375	c.169C>T	c.(169-171)CCC>TCC	p.P57S		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	57						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GGTGATGCTCCCCGCGGGGAT	0.473													19	42					0	0	0.006122	0	0
NBEA	26960	broad.mit.edu	37	13	35733926	35733926	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:35733926A>G	uc001uvb.2	+	23	3824	c.3618A>G	c.(3616-3618)AAA>AAG	p.K1206K	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1206						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TAGAAGAAAAAGAATTCAAAA	0.393													11	16					0	0	0.008291	0	0
NBEA	26960	broad.mit.edu	37	13	35735898	35735898	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:35735898T>C	uc001uvb.2	+	24	4079	c.3873T>C	c.(3871-3873)GGT>GGC	p.G1291G	NBEA_uc010abi.2_5'UTR	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1291						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CTGTGCAGGGTCGGTCTATCA	0.418													4	10					0	0	0.000602	0	0
NBEA	26960	broad.mit.edu	37	13	35883726	35883726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:35883726G>A	uc001uvb.2	+	36	6106	c.5900G>A	c.(5899-5901)GGA>GAA	p.G1967E	NBEA_uc010abi.2_Missense_Mutation_p.G623E	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1967						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATCAATGAAGGAAGGTAATTA	0.348													7	11					0	0	0.003080	0	0
C13orf36	400120	broad.mit.edu	37	13	37269247	37269247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:37269247C>T	uc001uvt.3	+	2	478	c.32C>T	c.(31-33)TCG>TTG	p.S11L		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	11						integral to membrane				skin(1)	1						TCAGGATTTTCGGGAAGTGTG	0.473													48	94					0	0	0.014410	0	0
FAM48A	55578	broad.mit.edu	37	13	37618230	37618230	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:37618230G>A	uc001uwg.2	-	7	629	c.381C>T	c.(379-381)CTC>CTT	p.L127L	FAM48A_uc010abt.2_Silent_p.L128L|FAM48A_uc001uwh.2_Silent_p.L128L|FAM48A_uc001uwi.2_Silent_p.L127L|FAM48A_uc001uwj.2_Silent_p.L128L|FAM48A_uc001uwk.2_Silent_p.L127L|FAM48A_uc010tes.1_Silent_p.L115L|FAM48A_uc001uwl.1_Silent_p.L127L	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	127					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		ATTTTTCTAGGAGATCAACCA	0.249													21	40					0	0	0.002780	0	0
FREM2	341640	broad.mit.edu	37	13	39263887	39263887	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:39263887C>T	uc001uwv.2	+	1	2715	c.2406C>T	c.(2404-2406)TTC>TTT	p.F802F		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	802	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGGCCCAGTTCCAGTTCCAGG	0.547													26	52					0	0	0.005443	0	0
FREM2	341640	broad.mit.edu	37	13	39264977	39264977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:39264977C>T	uc001uwv.2	+	1	3805	c.3496C>T	c.(3496-3498)CGT>TGT	p.R1166C		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1166	Extracellular (Potential).|CSPG 7.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATTTGTATTTCGTTGTTCTGA	0.418													49	103					0	0	0.014410	0	0
FREM2	341640	broad.mit.edu	37	13	39452969	39452969	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:39452969A>C	uc001uwv.2	+	23	9170	c.8861A>C	c.(8860-8862)GAC>GCC	p.D2954A		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2954	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGCTTAAAGGACAAAGCTCAG	0.423													23	45					0	0	0.002780	0	0
FREM2	341640	broad.mit.edu	37	13	39454666	39454666	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:39454666G>A	uc001uwv.2	+	24	9561	c.9252G>A	c.(9250-9252)AAG>AAA	p.K3084K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	3084	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ACCGCACCAAGAGGCAGATCC	0.587													17	38					0	0	0.010504	0	0
DGKH	160851	broad.mit.edu	37	13	42763384	42763384	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:42763384C>T	uc001uyl.1	+	15	1872	c.1851C>T	c.(1849-1851)ATC>ATT	p.I617I	DGKH_uc010tfh.1_Silent_p.I617I|DGKH_uc001uym.1_Silent_p.I617I|DGKH_uc010tfi.1_Silent_p.I372I|DGKH_uc010tfj.1_Silent_p.I472I|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Silent_p.I472I|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	617					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		CAAGGGAAATCATGTTGCGGG	0.458													18	36					0	0	0.004990	0	0
SPERT	220082	broad.mit.edu	37	13	46287337	46287337	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:46287337C>T	uc001van.1	+	3	257	c.177C>T	c.(175-177)TTC>TTT	p.F59F	SPERT_uc001vao.2_Silent_p.F23F	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	59						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		CCGAACCCTTCCCGAGGCTCC	0.647													4	24					0	0	0.009096	0	0
SPERT	220082	broad.mit.edu	37	13	46287917	46287917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:46287917G>A	uc001van.1	+	3	837	c.757G>A	c.(757-759)GAG>AAG	p.E253K	SPERT_uc001vao.2_Missense_Mutation_p.E217K	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	253	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		CCTCCGGGAGGAGAATCGCGC	0.682													5	10					0	0	0.000602	0	0
ZC3H13	23091	broad.mit.edu	37	13	46594614	46594614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:46594614C>T	uc010tfw.1	-	4	424	c.418G>A	c.(418-420)GAA>AAA	p.E140K	ZC3H13_uc001vas.1_Missense_Mutation_p.E140K|ZC3H13_uc001vat.1_Missense_Mutation_p.E140K	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	140							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		TCTACATTTTCTTCTTCACTT	0.338													14	39					0	0	0.002450	0	0
HTR2A	3356	broad.mit.edu	37	13	47466613	47466613	+	Silent	SNP	G	A	A	rs112426939		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:47466613G>A	uc001vbq.2	-	2	659	c.525C>T	c.(523-525)GTC>GTT	p.V175V	HTR2A_uc001vbr.2_Silent_p.V75V|HTR2A_uc010acr.2_Silent_p.V175V	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	175	Cytoplasmic (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TCTGGATGGCGACGTAGCGGT	0.532													49	268					0	0	0.014410	0	0
LOC220429	220429	broad.mit.edu	37	13	50466990	50466990	+	Missense_Mutation	SNP	T	C	C	rs144184696	by1000genomes	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:50466990T>C	uc001vdk.2	+	1	2446	c.2264T>C	c.(2263-2265)CTG>CCG	p.L755P		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GTCTGTCCACTGAGGGGTTTT	0.517													4	56					0	0	0.009096	0	0
TRIM13	10206	broad.mit.edu	37	13	50586631	50586631	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:50586631T>A	uc001vdq.1	+	3	868	c.555T>A	c.(553-555)TTT>TTA	p.F185L	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_5'Flank|KCNRG_uc001vdu.2_5'Flank|TRIM13_uc001vdp.1_Missense_Mutation_p.F188L|TRIM13_uc001vdr.1_Missense_Mutation_p.F185L|TRIM13_uc001vds.1_Missense_Mutation_p.F185L	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	185	Potential.				anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		TGAAGGAATTTTTTGAGAAGT	0.403													8	21					0	0	0.004482	0	0
ATP7B	540	broad.mit.edu	37	13	52523879	52523879	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:52523879G>A	uc001vfw.2	-	12	2941	c.2784C>T	c.(2782-2784)ATC>ATT	p.I928I	ATP7B_uc010adv.2_Silent_p.I498I|ATP7B_uc001vfx.2_Intron|ATP7B_uc001vfy.2_Silent_p.I817I|ATP7B_uc010tgt.1_Silent_p.I928I|ATP7B_uc010tgu.1_Silent_p.I880I|ATP7B_uc010tgv.1_Silent_p.I850I|ATP7B_uc001vfv.2_Silent_p.I200I|ATP7B_uc010tgs.1_Silent_p.I200I	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	928	Helical; (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		ACATGATGATGATAAATGGGA	0.403									Wilson_disease				30	69					0	0	0.003271	0	0
ATP7B	540	broad.mit.edu	37	13	52539167	52539167	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:52539167G>A	uc001vfw.2	-	5	1867	c.1710C>T	c.(1708-1710)ATC>ATT	p.I570I	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Silent_p.I570I|ATP7B_uc001vfy.2_Silent_p.I459I|ATP7B_uc010tgt.1_Silent_p.I570I|ATP7B_uc010tgu.1_Silent_p.I570I|ATP7B_uc010tgv.1_Silent_p.I570I|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	570	HMA 6.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TCATCCCTGTGATCTGCAACA	0.537									Wilson_disease				15	46					0	0	0.002450	0	0
ATP7B	540	broad.mit.edu	37	13	52548297	52548297	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:52548297C>T	uc001vfw.2	-	2	1216	c.1059G>A	c.(1057-1059)CAG>CAA	p.Q353Q	ATP7B_uc010adv.2_Silent_p.Q353Q|ATP7B_uc001vfx.2_Silent_p.Q353Q|ATP7B_uc001vfy.2_Intron|ATP7B_uc010tgt.1_Silent_p.Q353Q|ATP7B_uc010tgu.1_Silent_p.Q353Q|ATP7B_uc010tgv.1_Silent_p.Q353Q|ATP7B_uc010tgw.1_Silent_p.Q321Q	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	353	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TGCCCTGGACCTGGTTTCTCG	0.537									Wilson_disease				45	73					0	0	0.014410	0	0
KLHL1	57626	broad.mit.edu	37	13	70535554	70535554	+	Missense_Mutation	SNP	C	T	T	rs112767369		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:70535554C>T	uc001vip.2	-	3	1497	c.703G>A	c.(703-705)GAC>AAC	p.D235N	KLHL1_uc010thm.1_Missense_Mutation_p.D174N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	235	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GCAAAATAGTCGGAGACTGAA	0.448													5	33					0	0	0.000602	0	0
KLF12	11278	broad.mit.edu	37	13	74420350	74420350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:74420350G>A	uc001vjf.2	-	4	506	c.284C>T	c.(283-285)GCC>GTC	p.A95V	KLF12_uc010aeq.2_Missense_Mutation_p.A95V|KLF12_uc001vjg.3_Missense_Mutation_p.A95V	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12	95					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		GGATGAAACGGCAGTAGGGGA	0.507													37	61					0	0	0.006999	0	0
LMO7	4008	broad.mit.edu	37	13	76408439	76408439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:76408439G>A	uc001vjv.2	+	14	3203	c.2443G>A	c.(2443-2445)GAT>AAT	p.D815N	LMO7_uc010thv.1_Missense_Mutation_p.D766N|LMO7_uc001vjt.1_Missense_Mutation_p.D714N|LMO7_uc010thw.1_Missense_Mutation_p.D665N|LMO7_uc001vjw.1_Missense_Mutation_p.D721N	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1100	PDZ.					cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TTCATATAACGATTCAAAAGA	0.398													41	79					0	0	0.006999	0	0
MYCBP2	23077	broad.mit.edu	37	13	77671906	77671906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:77671906G>A	uc001vkf.2	-	57	9360	c.9269C>T	c.(9268-9270)CCT>CTT	p.P3090L	MYCBP2_uc010aev.2_Missense_Mutation_p.P2494L|MYCBP2_uc001vkg.1_Missense_Mutation_p.P613L|MYCBP2_uc010aew.2_Missense_Mutation_p.P476L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3090					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTCATGCAGAGGTGGTTCCTT	0.388													30	62					0	0	0.010818	0	0
MYCBP2	23077	broad.mit.edu	37	13	77730262	77730262	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:77730262A>G	uc001vkf.2	-	47	6823	c.6732T>C	c.(6730-6732)GGT>GGC	p.G2244G	MYCBP2_uc010aev.2_Silent_p.G1648G	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TGGTAGGCCAACCACAACGAA	0.373													21	42					0	0	0.012319	0	0
SCEL	8796	broad.mit.edu	37	13	78130048	78130048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:78130048G>A	uc001vki.2	+	2	208	c.38G>A	c.(37-39)GGA>GAA	p.G13E	SCEL_uc001vkj.2_Missense_Mutation_p.G13E|SCEL_uc010thx.1_Missense_Mutation_p.G13E	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	13					embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		TCTCCCACAGGAAATGGTAAT	0.348													26	51					0	0	0.010818	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454684	84454684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:84454684C>T	uc001vlk.2	-	1	1845	c.959G>A	c.(958-960)AGA>AAA	p.R320K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	320	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGCTGTGGGTCTGATTTTGAT	0.557													25	56					0	0	0.003330	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454854	84454854	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:84454854C>T	uc001vlk.2	-	1	1675	c.789G>A	c.(787-789)TTG>TTA	p.L263L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	263	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CTCGGTTTTTCAAAGGACACA	0.557													27	46					0	0	0.007291	0	0
GPC5	2262	broad.mit.edu	37	13	92101140	92101140	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:92101140A>G	uc010tif.1	+	2	655	c.289A>G	c.(289-291)AAG>GAG	p.K97E		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	97						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CTCTACATTAAAGTTTCTAAT	0.428													28	47					0	0	0.007291	0	0
GPC5	2262	broad.mit.edu	37	13	92345655	92345655	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:92345655C>T	uc010tif.1	+	3	906	c.540C>T	c.(538-540)AAC>AAT	p.N180N		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	180						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				ACCTCATTAACCCTGGTGTGA	0.443													33	66					0	0	0.003755	0	0
ABCC4	10257	broad.mit.edu	37	13	95813565	95813565	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:95813565A>G	uc001vmd.3	-	19	2452	c.2333T>C	c.(2332-2334)TTT>TCT	p.F778S	ABCC4_uc010afk.2_Missense_Mutation_p.F731S|ABCC4_uc001vme.2_Missense_Mutation_p.F778S|ABCC4_uc010tih.1_Missense_Mutation_p.F703S	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	778	ABC transmembrane type-1 2.|Helical; (Potential).				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TGCTATGCCAAAAAGAACGGT	0.363													15	38					0	0	0.007413	0	0
ABCC4	10257	broad.mit.edu	37	13	95858788	95858788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:95858788G>A	uc001vmd.3	-	8	1278	c.1159C>T	c.(1159-1161)CAG>TAG	p.Q387*	ABCC4_uc010afk.2_Nonsense_Mutation_p.Q387*|ABCC4_uc001vme.2_Nonsense_Mutation_p.Q387*|ABCC4_uc010tih.1_Nonsense_Mutation_p.Q312*|ABCC4_uc001vmf.2_Nonsense_Mutation_p.Q344*|ABCC4_uc010afl.1_Nonsense_Mutation_p.Q344*|ABCC4_uc010afm.1_Nonsense_Mutation_p.Q400*	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	387					platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	ACACCAACCTGGATTCTTCGG	0.468													36	56					0	0	0.006999	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485261	97485261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:97485261G>A	uc001vmw.2	+	2	1249	c.1225G>A	c.(1225-1227)GAG>AAG	p.E409K		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	409	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					GCAGCTTTACGAGTATGCAAA	0.572													44	45					0	0	0.008740	0	0
OXGR1	27199	broad.mit.edu	37	13	97639844	97639844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:97639844G>A	uc001vmx.1	-	4	414	c.170C>T	c.(169-171)ACT>ATT	p.T57I	OXGR1_uc010afr.1_Missense_Mutation_p.T57I	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	57	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			GAAAATGTAAGTGGATATCAC	0.458													16	12					0	0	0.004007	0	0
IPO5	3843	broad.mit.edu	37	13	98654969	98654969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:98654969C>T	uc001vnf.1	+	12	1330	c.1265C>T	c.(1264-1266)GCC>GTC	p.A422V	IPO5_uc001vne.2_Missense_Mutation_p.A440V|IPO5_uc010tik.1_Missense_Mutation_p.A297V|IPO5_uc010til.1_Missense_Mutation_p.A362V|IPO5_uc001vng.1_Missense_Mutation_p.A43V	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	422	HEAT 2.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						GCCTGTAATGCCGTGGGACAG	0.388													34	53					0	0	0.006230	0	0
COL4A1	1282	broad.mit.edu	37	13	110829287	110829287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:110829287C>T	uc001vqw.3	-	34	2936	c.2814G>A	c.(2812-2814)ATG>ATA	p.M938I	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	938	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCACCTTATCCATGGAGCCAG	0.587													40	59					0	0	0.008740	0	0
COL4A2	1284	broad.mit.edu	37	13	111121656	111121656	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:111121656T>C	uc001vqx.2	+	28	2477	c.2188T>C	c.(2188-2190)TTC>CTC	p.F730L		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	730	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			TCGTGAAGGGTTCCCAGGACC	0.577													7	12					0	0	0.001984	0	0
COL4A2	1284	broad.mit.edu	37	13	111147733	111147733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:111147733G>A	uc001vqx.2	+	40	3968	c.3679G>A	c.(3679-3681)GAA>AAA	p.E1227K		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1227	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CCCTCCTGGGGAAAGAGGTGA	0.567													31	84					0	0	0.008361	0	0
ZNF828	283489	broad.mit.edu	37	13	115090556	115090556	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr13:115090556C>T	uc010ahb.2	+	3	1568	c.1239C>T	c.(1237-1239)CCC>CCT	p.P413P	ZNF828_uc001vuv.2_Silent_p.P413P|ZNF828_uc010tko.1_Silent_p.P413P	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	413	Mediates interaction with MAD2L2.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AGGCAGTTCCCCCAGTGTCTC	0.577													15	95					0	0	0.003163	0	0
POTEG	404785	broad.mit.edu	37	14	19553734	19553734	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:19553734C>T	uc001vuz.1	+	1	370	c.318C>T	c.(316-318)TTC>TTT	p.F106F	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	106										ovary(1)	1						GCCACTGCTTCCCCTGCTGCA	0.607													53	295					0	0	0.014410	0	0
OR4M1	441670	broad.mit.edu	37	14	20248610	20248610	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:20248610C>T	uc010tku.1	+	1	129	c.129C>T	c.(127-129)ATC>ATT	p.I43I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CAGGAAATATCCTTATCATTT	0.418													79	168					0	0	0.014410	0	0
OR4N2	390429	broad.mit.edu	37	14	20296296	20296296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:20296296C>T	uc010tkv.1	+	1	689	c.689C>T	c.(688-690)TCT>TTT	p.S230F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGGTCTTCTTCTGAGGCAAAA	0.493													30	58					0	0	0.008361	0	0
OR4N5	390437	broad.mit.edu	37	14	20612138	20612138	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:20612138T>C	uc010tla.1	+	1	244	c.244T>C	c.(244-246)TTG>CTG	p.L82L		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCCCAGGATGTTGGTGGACTT	0.488													68	133					0	0	0.014410	0	0
OR4N5	390437	broad.mit.edu	37	14	20612732	20612732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:20612732C>T	uc010tla.1	+	1	838	c.838C>T	c.(838-840)CCT>TCT	p.P280S		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TGTCATCTTTCCTTTGATGAA	0.403													43	107					0	0	0.009718	0	0
OR11H6	122748	broad.mit.edu	37	14	20692516	20692516	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:20692516C>T	uc010tlc.1	+	1	648	c.648C>T	c.(646-648)ATC>ATT	p.I216I		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		CTGAGCTTATCTGTTACACCT	0.502													19	24					0	0	0.003954	0	0
TEP1	7011	broad.mit.edu	37	14	20872010	20872010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:20872010G>A	uc001vxe.2	-	6	1106	c.1066C>T	c.(1066-1068)CCC>TCC	p.P356S	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	356	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCGGGCAGGGGCACCAGCTTA	0.537													62	98					0	0	0.014410	0	0
RNASE4	6038	broad.mit.edu	37	14	21167874	21167874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:21167874C>T	uc001vxy.3	+	2	907	c.344C>T	c.(343-345)TCC>TTC	p.S115F	RNASE4_uc001vxx.3_RNA|RNASE4_uc001vya.2_Missense_Mutation_p.S115F	NM_002937	NP_002928	P34096	RNAS4_HUMAN	ribonuclease, RNase A family, 4 precursor	115					mRNA cleavage	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			central_nervous_system(1)	1	all_cancers(95;0.00304)		Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	GBM - Glioblastoma multiforme(265;0.0133)		ACAGGAAGTTCCAGGGCACCC	0.527													45	95					0	0	0.014410	0	0
FLJ10357	55701	broad.mit.edu	37	14	21548835	21548835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:21548835C>T	uc001vzp.2	+	12	2419	c.2390C>T	c.(2389-2391)TCG>TTG	p.S797L	FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.S83L	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	797					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CAGTGGCTCTCGGGCCCAGGG	0.632													15	30					0	0	0.004007	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623790	21623790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:21623790G>A	uc010tlp.1	-	1	395	c.395C>T	c.(394-396)ACC>ATC	p.T132I		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	132	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		GTTCACCAGGGTCTGGGGCAC	0.517													27	62					0	0	0.006320	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21792854	21792854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:21792854G>A	uc001wag.2	+	14	1840	c.1840G>A	c.(1840-1842)GAT>AAT	p.D614N	RPGRIP1_uc001wah.2_Missense_Mutation_p.D256N|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001waj.1_Missense_Mutation_p.D79N|RPGRIP1_uc001wak.2_Missense_Mutation_p.D89N|RPGRIP1_uc010aim.2_Intron|RPGRIP1_uc001wal.2_Silent_p.R22R|RPGRIP1_uc001wam.2_5'UTR	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	614					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		TGGAGATGAGGATAAAGTGGA	0.502													41	75					0	0	0.010771	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21794020	21794020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:21794020G>A	uc001wag.2	+	16	2398	c.2398G>A	c.(2398-2400)GAG>AAG	p.E800K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E442K|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.E275K|RPGRIP1_uc010aim.2_Missense_Mutation_p.E183K|RPGRIP1_uc001wal.2_Missense_Mutation_p.E159K|RPGRIP1_uc001wam.2_Missense_Mutation_p.E117K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	800					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		ACCTCAGAACGAGCTGTGGAT	0.502													10	22					0	0	0.006214	0	0
SUPT16H	11198	broad.mit.edu	37	14	21834603	21834603	+	Silent	SNP	G	A	A	rs112444644		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:21834603G>A	uc001wao.2	-	8	1380	c.1041C>T	c.(1039-1041)AAC>AAT	p.N347N		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	347					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		CATACCCTAGGTTTTTGGTAA	0.363													28	110					0	0	0.006320	0	0
Unknown	0	broad.mit.edu	37	14	22090685	22090685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:22090685G>A	uc001wbi.2	+	2	337	c.324G>A	c.(322-324)ATG>ATA	p.M108I						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		AGCTCCAGATGAAAGACTCTG	0.458													27	38					0	0	0.003954	0	0
CDH24	64403	broad.mit.edu	37	14	23524545	23524545	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:23524545G>A	uc001wil.2	-	3	479	c.219C>T	c.(217-219)GAC>GAT	p.D73D	CDH24_uc010akf.2_Silent_p.D73D|CDH24_uc001win.3_Silent_p.D73D	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	73	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		CCTCTCCCCGGTCAACATCCG	0.557											OREG0022594	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	34					0	0	0.004007	0	0
EFS	10278	broad.mit.edu	37	14	23829917	23829917	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:23829917G>A	uc001wjo.2	-	2	752	c.144C>T	c.(142-144)CTC>CTT	p.L48L	EFS_uc001wjp.2_Intron|EFS_uc010tnm.1_Intron	NM_005864	NP_005855	O43281	EFS_HUMAN	embryonal Fyn-associated substrate isoform 1	48	SH3.				cell adhesion|intracellular signal transduction	cytoplasm	SH3 domain binding			large_intestine(1)	1	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00649)		GTAGGGAGCAGAGGCACCAGC	0.672													22	42					0	0	0.014323	0	0
MYH6	4624	broad.mit.edu	37	14	23855289	23855289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:23855289C>T	uc001wjv.2	-	34	5078	c.5011G>A	c.(5011-5013)GAG>AAG	p.E1671K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1671	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCGATGTTCTCCTTCAGGTCG	0.642													18	40					0	0	0.010504	0	0
MYH6	4624	broad.mit.edu	37	14	23866401	23866401	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:23866401G>A	uc001wjv.2	-	17	2095	c.2028C>T	c.(2026-2028)ATC>ATT	p.I676I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	676	Actin-binding.|Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCTCATTGGGGATGATGCAAC	0.552													53	120					0	0	0.014410	0	0
LRRC16B	90668	broad.mit.edu	37	14	24526129	24526129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:24526129C>T	uc001wlj.2	+	13	1115	c.958C>T	c.(958-960)CAG>TAG	p.Q320*		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	320	LRR 3.									ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CTCAGGGCTCCAGGCACTCGG	0.627													11	21					0	0	0.013537	0	0
CPNE6	9362	broad.mit.edu	37	14	24543814	24543814	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:24543814G>A	uc001wll.2	+	6	672	c.573G>A	c.(571-573)TGG>TGA	p.W191*	CPNE6_uc010tnv.1_Nonsense_Mutation_p.W246*|CPNE6_uc001wlm.2_Nonsense_Mutation_p.W16*|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	191	C2 2.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		AGCTGGTCTGGAGAACTGAGG	0.517													15	72					0	0	0.002450	0	0
LTB4R2	56413	broad.mit.edu	37	14	24780543	24780543	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:24780543C>T	uc001woq.1	+	1	2383	c.766C>T	c.(766-768)CTG>TTG	p.L256L	CIDEB_uc001woo.2_5'UTR|CIDEB_uc001wop.2_5'UTR|LTB4R2_uc010alo.2_Silent_p.L225L|LTB4R2_uc001wor.2_Silent_p.L225L|LTB4R_uc001wos.2_5'Flank|LTB4R_uc010alp.2_5'Flank	NM_019839	NP_062813	Q9NPC1	LT4R2_HUMAN	leukotriene B4 receptor 2	256	Cytoplasmic (Potential).				chemotaxis|negative regulation of adenylate cyclase activity	integral to plasma membrane					0				GBM - Glioblastoma multiforme(265;0.018)		ggtgggccggcTGGTGAGCGC	0.502													8	7					0	0	0.003080	0	0
NOVA1	4857	broad.mit.edu	37	14	26917425	26917426	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:26917425_26917426CC>TT	uc001wpy.2	-	5	1581_1582	c.1263_1264GG>AA	c.(1261-1266)AAGGAT>AAAAAT	p.D422N	NOVA1_uc001wpz.2_Missense_Mutation_p.D398N|NOVA1_uc001wqa.2_Missense_Mutation_p.D300N	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	425	KH 3.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TCAACTACATCCTTGGATCCAT	0.465													19	46					0	0	0.004672	0	0
NPAS3	64067	broad.mit.edu	37	14	34270029	34270029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:34270029C>T	uc001wru.2	+	12	2580	c.2516C>T	c.(2515-2517)GCC>GTC	p.A839V	NPAS3_uc001wrs.2_Missense_Mutation_p.A826V|NPAS3_uc001wrt.2_Missense_Mutation_p.A807V|NPAS3_uc001wrv.2_Missense_Mutation_p.A809V	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	839					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GTGACCCTGGCCATGCAGAGC	0.677													5	7					0	0	0.000602	0	0
PSMA6	5687	broad.mit.edu	37	14	35786493	35786493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:35786493C>T	uc001wtd.2	+	7	831	c.722C>T	c.(721-723)GCT>GTT	p.A241V	KIAA0391_uc001wta.2_RNA|PSMA6_uc010tpt.1_Missense_Mutation_p.A162V|PSMA6_uc010tpu.1_Missense_Mutation_p.A162V	NM_002791	NP_002782	P60900	PSA6_HUMAN	proteasome alpha 6 subunit	241					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nuclear matrix|polysome|proteasome core complex, alpha-subunit complex|sarcomere	NF-kappaB binding|purine ribonucleoside triphosphate binding|RNA binding|threonine-type endopeptidase activity				0	Breast(36;0.0519)|Hepatocellular(127;0.158)		Lung(238;3.81e-05)|LUAD - Lung adenocarcinoma(48;5.59e-05)|Epithelial(34;0.00342)|all cancers(34;0.00973)	GBM - Glioblastoma multiforme(112;0.0234)		CACCTTGTTGCTCTAGCAGAG	0.368													55	100					0	0	0.014410	0	0
SFTA3	253970	broad.mit.edu	37	14	36946289	36946289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:36946289C>T	uc001wtr.2	-	3	780	c.148G>A	c.(148-150)GAA>AAA	p.E50K	SFTA3_uc001wtq.2_RNA|SFTA3_uc001wts.2_RNA	NM_001101341	NP_001094811	P0C7M3	SFTA3_HUMAN	surfactant associated 3	50											0						ATCCGCTTTTCCCTCTCCCTC	0.522													31	48					0	0	0.008361	0	0
LRFN5	145581	broad.mit.edu	37	14	42356771	42356771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:42356771G>A	uc001wvm.2	+	3	2141	c.943G>A	c.(943-945)GAG>AAG	p.E315K	LRFN5_uc010ana.2_Missense_Mutation_p.E315K	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	315	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GGGAGACCCTGAGCCTGCAAT	0.463										HNSCC(30;0.082)			32	50					0	0	0.010818	0	0
FSCB	84075	broad.mit.edu	37	14	44975965	44975965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:44975965C>T	uc001wvn.2	-	1	535	c.226G>A	c.(226-228)GAC>AAC	p.D76N		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	76						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		ACAATGGTGTCTGTCTGGAGA	0.413													54	103					0	0	0.014410	0	0
RPL10L	140801	broad.mit.edu	37	14	47120662	47120662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:47120662G>A	uc001wwg.2	-	1	367	c.278C>T	c.(277-279)CCC>CTC	p.P93L		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	93					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						GACATGGAAGGGATGGAGCCG	0.537													23	42					0	0	0.014323	0	0
ARF6	382	broad.mit.edu	37	14	50360697	50360697	+	Silent	SNP	C	T	T	rs141035771		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:50360697C>T	uc001wxg.3	+	2	864	c.243C>T	c.(241-243)ACC>ACT	p.T81T		NM_001663	NP_001654	P62330	ARF6_HUMAN	ADP-ribosylation factor 6	81					cell adhesion|cellular component movement|cortical actin cytoskeleton organization|negative regulation of receptor-mediated endocytosis|positive regulation of actin filament polymerization|positive regulation of establishment of protein localization in plasma membrane|protein localization at cell surface|protein transport|regulation of dendritic spine development|regulation of filopodium assembly|regulation of Rac protein signal transduction|ruffle organization|small GTPase mediated signal transduction|vesicle-mediated transport	cell cortex|endosome membrane|filopodium membrane|Golgi apparatus|membrane fraction|ruffle	GTP binding|GTPase activity|thioesterase binding				0	all_epithelial(31;0.000822)|Breast(41;0.0117)					ACACTGGGACCCAAGGTCTCA	0.582													21	23					0	0	0.002780	0	0
CDKL1	8814	broad.mit.edu	37	14	50862430	50862430	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:50862430G>A	uc010anu.1	-	5	727	c.727C>T	c.(727-729)CGA>TGA	p.R243*	CDKL1_uc001wxz.2_Nonsense_Mutation_p.R54*	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	53	Protein kinase.					cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					TTGAGCATTCGGATTTCCCGA	0.269													40	55					0	0	0.008740	0	0
TRIM9	114088	broad.mit.edu	37	14	51448794	51448794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:51448794G>A	uc001wyx.3	-	8	2396	c.1631C>T	c.(1630-1632)TCG>TTG	p.S544L	TRIM9_uc001wyy.2_Missense_Mutation_p.S625L	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	544	B30.2/SPRY.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					CGAGTGCGCCGAGCCAGGGTC	0.537													15	31					0	0	0.004007	0	0
SAMD4A	23034	broad.mit.edu	37	14	55226996	55226996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:55226996C>T	uc001xbb.2	+	6	1292	c.1291C>T	c.(1291-1293)CCC>TCC	p.P431S	SAMD4A_uc001xbc.2_Missense_Mutation_p.P343S|SAMD4A_uc001xbg.2_Missense_Mutation_p.P23S	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	432					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						CCGCCGGGAGCCCCAGGCCCC	0.716													24	40					0	0	0.002780	0	0
WDHD1	11169	broad.mit.edu	37	14	55453880	55453880	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:55453880G>A	uc001xbm.1	-	14	1830	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	WDHD1_uc010aom.1_Silent_p.F101F|WDHD1_uc001xbn.1_Silent_p.F461F	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	584						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						GATAAACAATGAAAAGCTGTT	0.378													17	33					0	0	0.004007	0	0
WDHD1	11169	broad.mit.edu	37	14	55455904	55455904	+	Silent	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:55455904G>T	uc001xbm.1	-	13	1446	c.1368C>A	c.(1366-1368)CGC>CGA	p.R456R	WDHD1_uc010aom.1_Intron|WDHD1_uc001xbn.1_Silent_p.R333R	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	456						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						CATTATAGCAGCGAATAATTC	0.368													7	32					2.0095e-06	2.20402e-06	0.001984	1	0
SOCS4	122809	broad.mit.edu	37	14	55510448	55510448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:55510448C>T	uc001xbo.2	+	3	1254	c.689C>T	c.(688-690)TCC>TTC	p.S230F	SOCS4_uc001xbp.2_Missense_Mutation_p.S230F	NM_199421	NP_955453	Q8WXH5	SOCS4_HUMAN	suppressor of cytokine signaling 4	230					intracellular signal transduction|negative regulation of signal transduction|regulation of growth					ovary(1)|kidney(1)	2						GATATGGATTCCGATGATGAA	0.393													17	39					0	0	0.004007	0	0
RPL13AP3	645683	broad.mit.edu	37	14	56233556	56233556	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:56233556C>T	uc010aos.2	+	1		c.594C>T				NR_004844				Homo sapiens ribosomal protein L13a pseudogene, mRNA (cDNA clone IMAGE:5271409).												0						GCCTGCCCTTCCTCCGTCGTC	0.562													3	5					0	0	0.004672	0	0
C14orf37	145407	broad.mit.edu	37	14	58471804	58471804	+	Missense_Mutation	SNP	G	A	A	rs146935912	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:58471804G>A	uc001xdc.2	-	7	2329	c.2218C>T	c.(2218-2220)CGC>TGC	p.R740C	C14orf37_uc010tro.1_Missense_Mutation_p.R778C|C14orf37_uc001xdd.2_Missense_Mutation_p.R740C	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	740	Poly-Arg.|Cytoplasmic (Potential).					integral to membrane	binding				0						CTCCTTCGGCGATTCATAACC	0.443													40	73					0	0	0.008740	0	0
KCNH5	27133	broad.mit.edu	37	14	63174777	63174777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:63174777C>T	uc001xfx.2	-	11	2467	c.2416G>A	c.(2416-2418)GGA>AGA	p.G806R	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	806	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTTCCATTTCCATTCTTCATT	0.458													36	94					0	0	0.004289	0	0
KCNH5	27133	broad.mit.edu	37	14	63316382	63316382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:63316382C>T	uc001xfx.2	-	8	1609	c.1558G>A	c.(1558-1560)GAT>AAT	p.D520N	KCNH5_uc001xfy.2_Missense_Mutation_p.D520N|KCNH5_uc001xfz.1_Missense_Mutation_p.D462N	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	520	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTTTCTGTATCAATGCCTTTT	0.358													38	57					0	0	0.004878	0	0
WDR89	112840	broad.mit.edu	37	14	64065642	64065642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:64065642C>T	uc001xgh.2	-	3	1265	c.1019G>A	c.(1018-1020)GGA>GAA	p.G340E	WDR89_uc001xgi.2_Missense_Mutation_p.G340E	NM_001008726	NP_001008726	Q96FK6	WDR89_HUMAN	WD repeat domain 89	340	WD 6.										0				OV - Ovarian serous cystadenocarcinoma(108;0.00543)|all cancers(60;0.0181)|BRCA - Breast invasive adenocarcinoma(234;0.101)		TGCATCTTCTCCTCCAGTCAA	0.448													46	69					0	0	0.013114	0	0
Unknown	0	broad.mit.edu	37	14	66479982	66479982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:66479982C>T	uc001xit.2	-	1	651	c.526G>A	c.(526-528)GGC>AGC	p.G176S						SubName: Full=Nuclease sensitive element binding protein-1;																		TGGGCCTGGCCTTCGGGAGCA	0.572													8	16					0	0	0.004482	0	0
RDH12	145226	broad.mit.edu	37	14	68193771	68193771	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:68193771C>T	uc001xjz.3	+	7	846	c.522C>T	c.(520-522)TCC>TCT	p.S174S		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	174					photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	TTAATGTGTCCTCGGTGGCTC	0.582													14	48					0	0	0.004990	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68221863	68221863	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:68221863G>A	uc001xka.2	-	37	7030	c.6891C>T	c.(6889-6891)GAC>GAT	p.D2297D	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkb.2_Silent_p.D143D	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	2297					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TCTTCAGGTGGTCCTTGGCCT	0.478													48	59					0	0	0.014410	0	0
ACTN1	87	broad.mit.edu	37	14	69369207	69369207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:69369207G>A	uc001xkl.2	-	8	1059	c.749C>T	c.(748-750)TCT>TTT	p.S250F	ACTN1_uc010ttb.1_Missense_Mutation_p.S185F|ACTN1_uc001xkm.2_Missense_Mutation_p.S250F|ACTN1_uc001xkn.2_Missense_Mutation_p.S250F|ACTN1_uc001xko.1_Missense_Mutation_p.S185F|ACTN1_uc010ttd.1_Missense_Mutation_p.S229F	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	250					focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		CTGGGCTCCAGAGAAGGCGTG	0.577													44	97					0	0	0.014410	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634843	70634843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:70634843C>T	uc001xly.2	-	2	1051	c.297G>A	c.(295-297)ATG>ATA	p.M99I	SLC8A3_uc001xlw.2_Missense_Mutation_p.M99I|SLC8A3_uc001xlx.2_Missense_Mutation_p.M99I|SLC8A3_uc001xlz.2_Missense_Mutation_p.M99I|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	99	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CAATAGATGCCATGAAGCGGT	0.473													12	30					0	0	0.010729	0	0
PCNX	22990	broad.mit.edu	37	14	71444814	71444814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:71444814C>T	uc001xmo.2	+	6	2206	c.1760C>T	c.(1759-1761)TCT>TTT	p.S587F	PCNX_uc001xmn.3_Missense_Mutation_p.S587F|PCNX_uc010are.1_Missense_Mutation_p.S587F	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	587						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CGAGGTGTTTCTGGTACCAAG	0.478													37	75					0	0	0.005524	0	0
RGS6	9628	broad.mit.edu	37	14	72976970	72976970	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:72976970C>T	uc001xna.3	+	14	1597	c.1074C>T	c.(1072-1074)TTC>TTT	p.F358F	RGS6_uc010ttn.1_Silent_p.F358F|RGS6_uc001xmx.3_Silent_p.F358F|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.F358F|RGS6_uc010ttp.1_Silent_p.F289F|RGS6_uc001xmz.1_Silent_p.F219F	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	358	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		AGTCCGAATTCAGTTCAGAAA	0.468													61	98					0	0	0.014410	0	0
RGS6	9628	broad.mit.edu	37	14	72985220	72985220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:72985220G>A	uc001xna.3	+	15	1776	c.1253G>A	c.(1252-1254)GGG>GAG	p.G418E	RGS6_uc010ttn.1_Missense_Mutation_p.G418E|RGS6_uc001xmx.3_Missense_Mutation_p.G418E|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.G418E|RGS6_uc010ttp.1_Missense_Mutation_p.G349E|RGS6_uc001xmz.1_Missense_Mutation_p.G279E	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	418	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		AAAGATGGAGGGAGATATACA	0.438													19	32					0	0	0.006122	0	0
FAM161B	145483	broad.mit.edu	37	14	74411260	74411260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:74411260C>T	uc001xpd.1	-	3	809	c.703G>A	c.(703-705)GAG>AAG	p.E235K		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						TCGCTGCGCTCCATGATCTCT	0.612													26	40					0	0	0.006320	0	0
C14orf115	55237	broad.mit.edu	37	14	74823753	74823753	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:74823753G>A	uc001xpw.3	+	2	458	c.267G>A	c.(265-267)GCG>GCA	p.A89A		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	89					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TGTTCGAGGCGGCCAGCATGC	0.647													15	26					0	0	0.003163	0	0
LTBP2	4053	broad.mit.edu	37	14	74970008	74970008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:74970008C>T	uc001xqa.2	-	33	5189	c.4802G>A	c.(4801-4803)GGG>GAG	p.G1601E		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1601	TB 4.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGTGCGGTGCCCACGCAGGGG	0.627													16	35					0	0	0.004990	0	0
KIAA0317	9870	broad.mit.edu	37	14	75134175	75134175	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:75134175G>A	uc001xqb.2	-	16	2542	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	KIAA0317_uc010tut.1_Silent_p.F518F	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	679	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		CACCTTTTAGGAAATGTTCCA	0.433													31	70					0	0	0.013726	0	0
YLPM1	56252	broad.mit.edu	37	14	75247117	75247117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:75247117C>T	uc001xqj.3	+	3	1244	c.1120C>T	c.(1120-1122)CCA>TCA	p.P374S	YLPM1_uc001xql.3_5'Flank	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	195	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GTCTGAGGACCCAGAAGAAGA	0.418													39	98					0	0	0.006230	0	0
PROX2	283571	broad.mit.edu	37	14	75330247	75330247	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:75330247C>T	uc001xqr.1	-	1	291	c.291G>A	c.(289-291)AAG>AAA	p.K97K	PROX2_uc001xqq.1_Silent_p.K23K	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	97					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		CTCGGGCCTTCTTTGGGCAGC	0.642													8	17					0	0	0.003080	0	0
PROX2	283571	broad.mit.edu	37	14	75330436	75330436	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:75330436C>T	uc001xqr.1	-	1	102	c.102G>A	c.(100-102)CTG>CTA	p.L34L	PROX2_uc001xqq.1_5'UTR	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	34					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		AGTCTCTATCCAGCTCTGGAG	0.572													17	44					0	0	0.006122	0	0
TMEM63C	57156	broad.mit.edu	37	14	77719649	77719649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:77719649C>T	uc001xtf.2	+	23	2362	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L	TMEM63C_uc010asq.1_Missense_Mutation_p.P717L	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	717						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CTGCTGCAGCCCGAGGAGGAG	0.622													6	3					0	0	0.001168	0	0
NRXN3	9369	broad.mit.edu	37	14	79181112	79181112	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:79181112G>A	uc001xun.2	+	5	1046	c.555G>A	c.(553-555)GTG>GTA	p.V185V	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.V319V	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	558	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CTATATCAGTGAACAGCAGGC	0.572													29	101					0	0	0.003271	0	0
STON2	85439	broad.mit.edu	37	14	81862514	81862514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:81862514C>T	uc010tvu.1	-	2	298	c.97G>A	c.(97-99)GAA>AAA	p.E33K	STON2_uc001xvk.1_Missense_Mutation_p.E33K|STON2_uc010atc.1_Missense_Mutation_p.E33K	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	33					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		AGGTGCTCTTCCGTGCCCCCT	0.572													12	20					0	0	0.002450	0	0
GALC	2581	broad.mit.edu	37	14	88448548	88448548	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:88448548C>T	uc001xvt.2	-	6	1020	c.621_splice	c.e6+1	p.K207_splice	GALC_uc010tvw.1_5'Flank|GALC_uc010tvx.1_Splice_Site_p.K181_splice|GALC_uc010tvy.1_Splice_Site_p.K184_splice|GALC_uc010tvz.1_Splice_Site_p.K151_splice|GALC_uc001xvu.1_Splice_Site_p.K207_splice	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor						carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						GTTGTACACACCTTAATATAA	0.289													9	25					0	0	0.008291	0	0
GPR65	8477	broad.mit.edu	37	14	88477678	88477678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:88477678G>A	uc001xvv.2	+	2	1017	c.487G>A	c.(487-489)GAA>AAA	p.E163K		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	163	Extracellular (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						TTGCGATGCCGAAAAGTCTAA	0.393													36	59					0	0	0.003271	0	0
KCNK10	54207	broad.mit.edu	37	14	88729597	88729597	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:88729597G>A	uc001xwo.2	-	2	793	c.336C>T	c.(334-336)TTC>TTT	p.F112F	KCNK10_uc001xwm.2_Silent_p.F117F|KCNK10_uc001xwn.2_Silent_p.F117F	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	112					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GATCCCGCAGGAATTCCGCCT	0.582													13	34					0	0	0.001855	0	0
KCNK13	56659	broad.mit.edu	37	14	90651002	90651002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:90651002G>A	uc001xye.1	+	2	1324	c.882G>A	c.(880-882)ATG>ATA	p.M294I		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	294	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TGAGGAAAATGGACAGCGGGT	0.532													35	71					0	0	0.013726	0	0
CATSPERB	79820	broad.mit.edu	37	14	92055942	92055942	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:92055942G>A	uc001xzs.1	-	24	3032	c.2892C>T	c.(2890-2892)GTC>GTT	p.V964V	CATSPERB_uc010aub.1_Silent_p.V486V	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	964					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ATTGCAATGGGACACGTCCAT	0.368													21	37					0	0	0.014323	0	0
TC2N	123036	broad.mit.edu	37	14	92251698	92251698	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:92251698G>A	uc001xzu.3	-	11	1361	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	TC2N_uc001xzt.3_Silent_p.F390F|TC2N_uc010auc.2_Silent_p.F326F|TC2N_uc001xzv.3_Silent_p.F390F	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	390	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		CCACCTTCACGAAAAAACCTA	0.323													84	103					0	0	0.014410	0	0
TC2N	123036	broad.mit.edu	37	14	92265359	92265359	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:92265359T>C	uc001xzu.3	-	6	802	c.611A>G	c.(610-612)AAT>AGT	p.N204S	TC2N_uc001xzt.3_Missense_Mutation_p.N204S|TC2N_uc010auc.2_Missense_Mutation_p.N204S|TC2N_uc001xzv.3_Missense_Mutation_p.N204S	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	204						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		CCCCTGAGAATTTTTCCTTGA	0.318													15	55					0	0	0.008871	0	0
BTBD7	55727	broad.mit.edu	37	14	93760510	93760510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:93760510G>A	uc001ybo.2	-	3	1182	c.856C>T	c.(856-858)CCA>TCA	p.P286S	BTBD7_uc010aur.2_5'UTR|BTBD7_uc010two.1_Missense_Mutation_p.P201S|BTBD7_uc001ybp.2_Intron|BTBD7_uc001ybq.3_Missense_Mutation_p.P201S|BTBD7_uc001ybr.2_Missense_Mutation_p.P286S	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	286	BTB 2.									pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		CGAAAAAATGGGGACCGTGCA	0.398													16	22					0	0	0.006122	0	0
KIAA1409	57578	broad.mit.edu	37	14	94053136	94053136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:94053136C>T	uc001ybv.1	+	19	2466	c.2383C>T	c.(2383-2385)CTT>TTT	p.L795F	KIAA1409_uc001ybs.1_Missense_Mutation_p.L795F	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	972						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCCAGACATTCTTTTTAATAT	0.363													35	57					0	0	0.003755	0	0
KIAA1409	57578	broad.mit.edu	37	14	94053162	94053162	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:94053162G>A	uc001ybv.1	+	19	2492	c.2409G>A	c.(2407-2409)AAG>AAA	p.K803K	KIAA1409_uc001ybs.1_Silent_p.K803K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	980						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATTGCCTGAAGATTCTCTGTC	0.368													41	89					0	0	0.006999	0	0
SERPINA6	866	broad.mit.edu	37	14	94770800	94770800	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:94770800G>A	uc001ycv.2	-	5	1277	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	391					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TGCTCCAGGTGAAGTGGTCGA	0.547													15	61					0	0	0.003163	0	0
SERPINA3	12	broad.mit.edu	37	14	95081262	95081262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:95081262G>A	uc001ydp.2	+	2	563	c.484G>A	c.(484-486)GGC>AGC	p.G162S	SERPINA3_uc001ydo.3_Missense_Mutation_p.G187S|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.G162S|SERPINA3_uc001yds.2_Missense_Mutation_p.G162S|SERPINA3_uc010avg.2_Missense_Mutation_p.G162S	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	162					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		GAGGCTGTATGGCTCCGAGGC	0.512													18	29					0	0	0.007413	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108138	95108138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:95108138G>A	uc001ydt.2	+	2	743	c.655G>A	c.(655-657)GAA>AAA	p.E219K		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						ACACATTGACGAATATACAGA	0.622													53	127					0	0	0.014410	0	0
DICER1	23405	broad.mit.edu	37	14	95596409	95596409	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:95596409G>A	uc001ydw.2	-	6	741	c.559C>T	c.(559-561)CGA>TGA	p.R187*	DICER1_uc001ydv.2_Nonsense_Mutation_p.R177*|DICER1_uc001ydx.2_Nonsense_Mutation_p.R187*	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	187	Helicase ATP-binding.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		ATAATTTCTCGATAGGGGTGG	0.328			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				8	25					0	0	0.006214	0	0
TCL6	27004	broad.mit.edu	37	14	96136862	96136862	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:96136862C>T	uc001yeq.2	+	6	1811	c.342C>T	c.(340-342)TTC>TTT	p.F114F	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Silent_p.F56F|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_Intron|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		GTCCTTTTTTCCTTCCTTCTC	0.502			T	TRA@	T-ALL								19	29					0	0	0.008871	0	0
AK7	122481	broad.mit.edu	37	14	96916185	96916185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:96916185G>A	uc001yfn.2	+	9	961	c.917G>A	c.(916-918)AGA>AAA	p.R306K		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	306	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		AAAATACCCAGAGAAAATGCA	0.313													7	19					0	0	0.001984	0	0
CCNK	8812	broad.mit.edu	37	14	99959863	99959863	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:99959863C>T	uc001ygi.3	+	3	340	c.210C>T	c.(208-210)ACC>ACT	p.T70T	CCNK_uc001ygg.3_Silent_p.T70T	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	70					cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				ACTATGATACCCTGGCAACTG	0.313													19	37					0	0	0.007413	0	0
EML1	2009	broad.mit.edu	37	14	100331891	100331891	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:100331891C>T	uc001ygs.2	+	3	360	c.291C>T	c.(289-291)GTC>GTT	p.V97V	EML1_uc010avt.1_Silent_p.V84V|EML1_uc010tww.1_Silent_p.V66V|EML1_uc001ygq.2_Silent_p.V97V|EML1_uc001ygr.2_Silent_p.V97V	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	97						cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				GAACCACGGTCAACAATGGCA	0.468													18	33					0	0	0.008871	0	0
DLK1	8788	broad.mit.edu	37	14	101198519	101198519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:101198519G>A	uc001yhs.3	+	4	556	c.403G>A	c.(403-405)GGC>AGC	p.G135S	DLK1_uc001yhu.3_Missense_Mutation_p.G135S	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	135	Extracellular (Potential).|EGF-like 4.				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				TGTGATCAACGGGTAAATATC	0.542													22	49					0	0	0.005443	0	0
DIO3	1735	broad.mit.edu	37	14	102028734	102028734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:102028734C>T	uc010txq.1	+	2	1047	c.823C>T	c.(823-825)CCC>TCC	p.P275S	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	275	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				CGGCGCTCGGCCCCGGAGGGT	0.602													15	28					0	0	0.003163	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102483792	102483792	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:102483792G>T	uc001yks.2	+	40	8292	c.8128G>T	c.(8128-8130)GGG>TGG	p.G2710W	DYNC1H1_uc001ykt.1_Missense_Mutation_p.G201W	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2710	AAA 3 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CCAGTTTGTTGGGGCTTGTAA	0.522													31	54					2.61193e-14	2.88964e-14	0.009535	1	0
TNFAIP2	7127	broad.mit.edu	37	14	103597417	103597417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:103597417G>A	uc001ymm.1	+	6	1359	c.1228G>A	c.(1228-1230)GAG>AAG	p.E410K	TNFAIP2_uc010awo.1_Missense_Mutation_p.E122K|TNFAIP2_uc010txz.1_Missense_Mutation_p.E79K|TNFAIP2_uc010tya.1_5'Flank	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	410					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			TGAATTTCTGGAGAGAGGCAA	0.562													11	70					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	14	103708158	103708158	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:103708158G>A	uc001ymo.1	+	1		c.362G>A								full-length cDNA clone CS0DE012YF10 of Placenta of Homo sapiens (human).																		ACGCGTGAAGGAAAATGATCA	0.463													3	3					0	0	0.004672	0	0
KIF26A	26153	broad.mit.edu	37	14	104643552	104643552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:104643552C>T	uc001yos.3	+	12	4427	c.4427C>T	c.(4426-4428)CCA>CTA	p.P1476L		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1476					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		ACACACGGTCCAGCTCCCGCC	0.736													8	10					0	0	0.004482	0	0
AKT1	207	broad.mit.edu	37	14	105242064	105242064	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:105242064G>A	uc001ypk.2	-	5	914	c.360C>T	c.(358-360)TTC>TTT	p.F120F	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.F120F|AKT1_uc010axa.2_Silent_p.F120F|AKT1_uc001ypm.2_Silent_p.F120F|AKT1_uc001ypn.2_Silent_p.F120F|AKT1_uc010tyk.1_Silent_p.F58F	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	120					activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	AGCCCGACCGGAAGTCCATCT	0.637		1	Mis		breast|colorectal|ovarian|NSCLC								23	41					0	0	0.003330	0	0
ADAM6	8755	broad.mit.edu	37	14	106174455	106174455	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:106174455G>A	uc010tyt.1	-	3632		c.59665C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron					Parts of antibodies, mostly variable regions.												0						ggagttgagggagatggggta	0.433													3	7					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106236650	106236650	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:106236650G>A	uc010tyt.1	-	3614		c.57555C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TGGGCATGGGGGAGGTGTGTC	0.647													35	266					0	0	0.005524	0	0
ADAM6	8755	broad.mit.edu	37	14	106311954	106311954	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:106311954C>T	uc010tyt.1	-	3608		c.56969G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Missense_Mutation_p.D34N|uc001ysk.1_Missense_Mutation_p.D34N|uc001ysl.1_Missense_Mutation_p.D34N|uc001ysm.1_5'UTR|uc001ysn.1_5'UTR|uc001yso.1_5'UTR					Parts of antibodies, mostly variable regions.												0						GGGCTGTTATCCTTTGGGTGT	0.577													31	44					0	0	0.008361	0	0
ADAM6	8755	broad.mit.edu	37	14	106405782	106405782	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:106405782C>T	uc010tyt.1	-	2358		c.42282G>A								Parts of antibodies, mostly variable regions.												0						CAAGGCCTCTCGATGGGGACT	0.517													31	74					0	0	0.010818	0	0
ADAM6	8755	broad.mit.edu	37	14	106641726	106641727	+	RNA	DNP	CC	TA	TA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:106641726_106641727CC>TA	uc010tyt.1	-	1021		c.24274_24275GG>TA								Parts of antibodies, mostly variable regions.												0						CCACTCAAGCCCTTGTCCAGGG	0.55													68	121					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	107160090	107160090	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr14:107160090C>T	uc010tyt.1	-	40		c.2918G>A								Parts of antibodies, mostly variable regions.												0						ATCCGGAAGCCTTGCAGGAGA	0.562													10	38					0	0	0.001855	0	0
OR4M2	390538	broad.mit.edu	37	15	22369378	22369379	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:22369378_22369379CC>TT	uc010tzu.1	+	1	803_804	c.803_804CC>TT	c.(802-804)TCC>TTT	p.S268F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GACTCGTTTTCCCTAGATAAAG	0.421													27	52					0	0	0.004672	0	0
OR4N4	283694	broad.mit.edu	37	15	22383340	22383340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:22383340C>T	uc001yuc.1	+	7	1849	c.868C>T	c.(868-870)CGC>TGC	p.R290C	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.R290C	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTATACCCTTCGCAACCAGGA	0.413													30	73					0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	15	22440507	22440507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:22440507C>T	uc001yug.2	-	1	359	c.340G>A	c.(340-342)GAG>AAG	p.E114K						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TAGTGGGACTCGTACCACTGT	0.478													6	10					0	0	0.001168	0	0
C15orf2	23742	broad.mit.edu	37	15	24921998	24921998	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:24921998G>A	uc001ywo.2	+	1	1458	c.984G>A	c.(982-984)AGG>AGA	p.R328R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	328	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTGCAAAAGGAAAATGTCGA	0.587													22	38					0	0	0.002780	0	0
SNRPN	6638	broad.mit.edu	37	15	25222117	25222117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:25222117C>T	uc001ywp.1	+	10	1251	c.361C>T	c.(361-363)CCC>TCC	p.P121S	SNRPN_uc001ywq.1_Missense_Mutation_p.P121S|SNRPN_uc001ywr.1_Missense_Mutation_p.P121S|SNRPN_uc001yws.1_Missense_Mutation_p.P121S|SNRPN_uc001ywt.1_Missense_Mutation_p.P121S|SNRPN_uc001ywv.1_Missense_Mutation_p.P124S|SNRPN_uc001yww.1_Missense_Mutation_p.P121S|SNRPN_uc001ywx.1_Missense_Mutation_p.P121S|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	121					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		TGTGCCAATTCCCCAGGCCCC	0.582									Prader-Willi_syndrome				34	51					0	0	0.013726	0	0
SNORD116-4	100033416	broad.mit.edu	37	15	25304622	25304622	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:25304622G>A	uc001yxh.1	+	4		c.400G>A			SNORD116-4_uc001yxj.1_RNA|SNORD116-4_uc001yxm.1_RNA|IPW_uc001yxn.3_RNA|SNORD116-4_uc001yxl.3_5'Flank|SNORD116-5_uc001yxo.2_5'Flank					Homo sapiens clone kid4 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						AGGTCTTTAAGGTCGTCAGCT	0.502													5	42					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	15	28878836	28878836	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:28878836C>T	uc010aza.1	+	2		c.274C>T			uc010azb.1_RNA					Homo sapiens cDNA, FLJ97818.																		TTACACGCTTCCTATTTGGCA	0.453													16	31					0	0	0.004990	0	0
CHRM5	1133	broad.mit.edu	37	15	34355903	34355903	+	Missense_Mutation	SNP	G	A	A	rs145125191	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:34355903G>A	uc001zhk.1	+	3	1655	c.985G>A	c.(985-987)GGT>AGT	p.G329S	CHRM5_uc001zhl.1_Missense_Mutation_p.G329S	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	329	Cytoplasmic (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	CAAGAGTCAGGGTAAGGAAAG	0.502													39	71					0	0	0.006999	0	0
TMCO5A	145942	broad.mit.edu	37	15	38233393	38233393	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:38233393A>T	uc001zjw.2	+	6	534	c.431A>T	c.(430-432)AAG>ATG	p.K144M	TMCO5A_uc001zjv.1_Missense_Mutation_p.K144M|TMCO5A_uc010bbc.1_Missense_Mutation_p.K144M	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	144	Potential.					integral to membrane				central_nervous_system(1)	1						TGCCAAGAGAAGGAGCTGCTC	0.423													15	34					0	0	0.004990	0	0
THBS1	7057	broad.mit.edu	37	15	39877740	39877740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:39877740G>A	uc001zkh.2	+	7	1275	c.1096G>A	c.(1096-1098)GGA>AGA	p.G366R		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	366	VWFC.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AGTTCCTGATGGAGAATGCTG	0.502													30	35					0	0	0.004289	0	0
C15orf23	90417	broad.mit.edu	37	15	40675049	40675049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:40675049G>A	uc001zll.2	+	1	128	c.13G>A	c.(13-15)GAA>AAA	p.E5K	C15orf23_uc010ucp.1_Missense_Mutation_p.E5K|C15orf23_uc001zlo.2_Missense_Mutation_p.E5K|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	5						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GGCGGCTCCCGAAGCCCCGCC	0.582													6	12					0	0	0.003080	0	0
DNAJC17	55192	broad.mit.edu	37	15	41068488	41068488	+	Silent	SNP	G	A	A	rs146094788		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:41068488G>A	uc001zms.1	-	6	395	c.384C>T	c.(382-384)ATC>ATT	p.I128I	DNAJC17_uc010bbz.1_RNA|DNAJC17_uc010bca.1_RNA|DNAJC17_uc010bcb.1_RNA	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	128					protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		TCAGGCGTTCGATCTGCAGAG	0.587													13	21					0	0	0.013537	0	0
LTK	4058	broad.mit.edu	37	15	41797411	41797411	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:41797411G>A	uc001zoa.3	-	15	2098	c.1920C>T	c.(1918-1920)ATC>ATT	p.I640I	LTK_uc001zob.3_Silent_p.I579I|LTK_uc010ucx.1_Silent_p.I510I|LTK_uc010bcg.2_Silent_p.I338I	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	640	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		CTAACCTGTGGATGAAGTGAT	0.577										TSP Lung(18;0.14)			16	33					0	0	0.004990	0	0
TP53BP1	7158	broad.mit.edu	37	15	43705379	43705380	+	Missense_Mutation	DNP	TC	GA	GA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:43705379_43705380TC>GA	uc001zrs.2	-	24	5375_5376	c.5227_5228GA>TC	c.(5227-5229)GAC>TCC	p.D1743S	TP53BP1_uc010udp.1_Missense_Mutation_p.D1741S|TP53BP1_uc001zrq.3_Missense_Mutation_p.D1746S|TP53BP1_uc001zrr.3_Missense_Mutation_p.D1748S|TP53BP1_uc001zrp.2_Missense_Mutation_p.D160S	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1743	BRCT 1.				double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GGCCAACTTGTCACTGGTTGTG	0.554								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					20	45					0	0	0.004672	0	0
TP53BP1	7158	broad.mit.edu	37	15	43705503	43705504	+	Missense_Mutation	DNP	GG	AA	AA	rs76780868		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:43705503_43705504GG>AA	uc001zrs.2	-	24	5251_5252	c.5103_5104CC>TT	c.(5101-5106)AGCCCC>AGTTCC	p.P1702S	TP53BP1_uc010udp.1_Missense_Mutation_p.P1700S|TP53BP1_uc001zrq.3_Missense_Mutation_p.P1705S|TP53BP1_uc001zrr.3_Missense_Mutation_p.P1707S|TP53BP1_uc001zrp.2_Missense_Mutation_p.P119S	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1702					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		CTCTCACAGGGGCTCACAAACT	0.54								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					10	17					0	0	0.004672	0	0
SERINC4	619189	broad.mit.edu	37	15	44089049	44089049	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:44089049C>A	uc010bds.1	-	4	670	c.202G>T	c.(202-204)GAG>TAG	p.E68*	ELL3_uc001zsx.1_5'UTR|C15orf63_uc001ztb.2_Intron|SERINC4_uc001ztc.1_RNA|SERINC4_uc001ztd.1_Intron|SERINC4_uc001zte.1_Nonsense_Mutation_p.E68*	NM_001033517	NP_001028689	A6NH21	SERC4_HUMAN	serine incorporator 4	312					phospholipid biosynthetic process	integral to membrane					0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		GBM - Glioblastoma multiforme(94;7.81e-07)		TTACCTCTCTCTGGAGGACGG	0.498													76	122					3.20846e-33	3.56507e-33	0.014410	1	0
SLC28A2	9153	broad.mit.edu	37	15	45545416	45545416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:45545416G>A	uc001zva.2	+	2	68	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	1					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		AACAGGAGATGGAGAAAGCAA	0.483													19	16					0	0	0.010504	0	0
SLC12A1	6557	broad.mit.edu	37	15	48513143	48513143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:48513143G>A	uc001zwn.3	+	4	794	c.578G>A	c.(577-579)GGA>GAA	p.G193E	SLC12A1_uc010uew.1_5'UTR|SLC12A1_uc010bem.2_Missense_Mutation_p.G193E|SLC12A1_uc010uex.1_Missense_Mutation_p.G193E|SLC12A1_uc001zwq.3_5'Flank	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	193	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	AACATCTGGGGAGTCATGCTC	0.433													50	81					0	0	0.014410	0	0
FBN1	2200	broad.mit.edu	37	15	48802295	48802295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:48802295G>A	uc001zwx.1	-	14	1988	c.1660C>T	c.(1660-1662)CAT>TAT	p.H554Y		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	554	EGF-like 8; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CACACGCAATGAAAACTGCCA	0.383													7	34					0	0	0.001984	0	0
C15orf33	196951	broad.mit.edu	37	15	49882087	49882087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:49882087G>A	uc001zxl.2	-	4	517	c.223C>T	c.(223-225)CCT>TCT	p.P75S	C15orf33_uc001zxm.2_Missense_Mutation_p.P75S	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	75										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		AATATTCGAGGAACATTTTCC	0.294													16	62					0	0	0.004007	0	0
HDC	3067	broad.mit.edu	37	15	50540490	50540490	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:50540490G>A	uc001zxz.2	-	10	1198	c.1092C>T	c.(1090-1092)TTC>TTT	p.F364F	HDC_uc001zxy.2_Silent_p.F107F|HDC_uc010uff.1_Intron	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	364					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	ACCGAATCACGAACCAGAGTT	0.522													16	21					0	0	0.008871	0	0
GLDN	342035	broad.mit.edu	37	15	51687123	51687123	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:51687123G>A	uc002aba.2	+	5	802	c.633G>A	c.(631-633)GGG>GGA	p.G211G	GLDN_uc002abb.2_Silent_p.G87G	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	211	Collagen-like 2.|Extracellular (Potential).				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		GCCCACCAGGGCAGAAGGGAG	0.577													9	37					0	0	0.008291	0	0
SCG3	29106	broad.mit.edu	37	15	51993416	51993416	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:51993416A>G	uc002abh.2	+	10	1590	c.1182A>G	c.(1180-1182)CCA>CCG	p.P394P	SCG3_uc010ufz.1_Silent_p.P162P	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	394					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		ACTCCAACCCAGGAGGAAAGA	0.433													25	54					0	0	0.003954	0	0
MYO5C	55930	broad.mit.edu	37	15	52539675	52539675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:52539675G>A	uc010bff.2	-	15	1998	c.1861C>T	c.(1861-1863)CGG>TGG	p.R621W	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	621	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		ACTGTGGTCCGGAAATGCTTG	0.498													58	83					0	0	0.014410	0	0
WDR72	256764	broad.mit.edu	37	15	53901721	53901721	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:53901721G>A	uc002acj.2	-	17	2983	c.2941C>T	c.(2941-2943)CAG>TAG	p.Q981*		NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	981										lung(1)|skin(1)	2				all cancers(107;0.0511)		TGCACAGACTGGTCTCTCCAA	0.398													8	26					0	0	0.003080	0	0
UNC13C	440279	broad.mit.edu	37	15	54305335	54305335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:54305335G>A	uc002ack.2	+	1	235	c.235G>A	c.(235-237)GAA>AAA	p.E79K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	79					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATCCACTGAGGAAGACGAGGC	0.423													38	35					0	0	0.006230	0	0
UNC13C	440279	broad.mit.edu	37	15	54307723	54307723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:54307723G>A	uc002ack.2	+	1	2623	c.2623G>A	c.(2623-2625)GAA>AAA	p.E875K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	875					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGCTGACAATGAAACAGATTA	0.388													31	51					0	0	0.008361	0	0
UNC13C	440279	broad.mit.edu	37	15	54527306	54527306	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:54527306G>A	uc002ack.2	+	4	3150	c.3150G>A	c.(3148-3150)GTG>GTA	p.V1050V		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1050					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCCGAGATGTGGTAAGTTACA	0.378													9	31					0	0	0.008291	0	0
UNC13C	440279	broad.mit.edu	37	15	54707217	54707217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:54707217G>A	uc002ack.2	+	17	4885	c.4885G>A	c.(4885-4887)GAA>AAA	p.E1629K	UNC13C_uc002acl.2_Missense_Mutation_p.E459K	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1629					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AATAAGTGCCGAAATTATGTG	0.308													27	31					0	0	0.007291	0	0
PRTG	283659	broad.mit.edu	37	15	55972763	55972763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:55972763G>A	uc002adg.2	-	5	788	c.740C>T	c.(739-741)TCT>TTT	p.S247F		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	247	Ig-like 3.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		CTGATGAAGAGATGTTGTTAT	0.383													51	84					0	0	0.014410	0	0
ZNF280D	54816	broad.mit.edu	37	15	56970922	56970922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:56970922G>A	uc002adu.2	-	11	1319	c.1102C>T	c.(1102-1104)CCC>TCC	p.P368S	ZNF280D_uc002adv.2_Missense_Mutation_p.P355S|ZNF280D_uc010bfq.2_Missense_Mutation_p.P368S|ZNF280D_uc002adw.1_Missense_Mutation_p.P396S|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	368	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		AATGGTGTGGGAAACTGACGG	0.408													26	46					0	0	0.008361	0	0
BNIP2	663	broad.mit.edu	37	15	59961534	59961534	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:59961534G>A	uc010uhc.1	-	8	1101	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I	BNIP2_uc002agi.3_5'Flank|BNIP2_uc010uhb.1_Silent_p.I307I	NM_004330	NP_004321	Q12982	BNIP2_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 2	245	CRAL-TRIO.				anti-apoptosis|apoptosis|positive regulation of muscle cell differentiation	nuclear envelope|perinuclear region of cytoplasm	calcium ion binding|GTPase activator activity|protein binding			ovary(1)	1						GATGTACAATGATTAGGGATT	0.279													27	49					0	0	0.006320	0	0
HERC1	8925	broad.mit.edu	37	15	63904509	63904509	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:63904509G>A	uc002amp.2	-	77	14489	c.14341C>T	c.(14341-14343)CGA>TGA	p.R4781*	HERC1_uc002amo.2_5'Flank	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	4781	HECT.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GCTGGTAGTCGAGATCTTCCT	0.458													17	21					0	0	0.004990	0	0
ZNF609	23060	broad.mit.edu	37	15	64967617	64967617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:64967617G>A	uc002ann.2	+	4	2564	c.2564G>A	c.(2563-2565)GGG>GAG	p.G855E		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	855						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GGGGAGGATGGGGAGGGCAAG	0.512													39	53					0	0	0.006230	0	0
ANKDD1A	348094	broad.mit.edu	37	15	65235725	65235725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:65235725G>A	uc002aoa.2	+	11	1041	c.1012G>A	c.(1012-1014)GAC>AAC	p.D338N	ANKDD1A_uc002aoc.2_RNA|ANKDD1A_uc010bha.2_Missense_Mutation_p.D247N	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	338	ANK 10.				signal transduction					ovary(1)	1						CGCCTGGCAGGACATAGCAGA	0.413													124	198					0	0	0.014410	0	0
IGDCC4	57722	broad.mit.edu	37	15	65685779	65685779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:65685779G>A	uc002aou.1	-	10	2015	c.1805C>T	c.(1804-1806)TCG>TTG	p.S602L	IGDCC4_uc002aot.1_Missense_Mutation_p.S190L	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	602	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TGTACCAGCCGAAATCCGTAC	0.552													25	44					0	0	0.004656	0	0
PTPLAD1	51495	broad.mit.edu	37	15	65851053	65851053	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:65851053C>T	uc002apc.2	+	5	553	c.405C>T	c.(403-405)AGC>AGT	p.S135S	PTPLAD1_uc002apb.1_RNA|PTPLAD1_uc010uiw.1_Silent_p.S80S	NM_016395	NP_057479	Q9P035	HACD3_HUMAN	protein tyrosine phosphatase-like A domain	135	Potential.|Cytoplasmic (Potential).				activation of JUN kinase activity|fatty acid biosynthetic process|I-kappaB kinase/NF-kappaB cascade|Rac protein signal transduction	endoplasmic reticulum membrane|integral to membrane	GTPase activator activity|lyase activity|protein binding				0						GACTGGAAAGCGAAGGCTCTC	0.428													12	9					0	0	0.002450	0	0
SMAD6	4091	broad.mit.edu	37	15	67004021	67004021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:67004021C>T	uc002aqf.2	+	2	1756	c.833C>T	c.(832-834)CCC>CTC	p.P278L	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.P17L	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	278	Poly-Pro.				BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			skin(1)	1						CCGCCACCTCCCTACTCTCGG	0.557													33	79					0	0	0.003755	0	0
ITGA11	22801	broad.mit.edu	37	15	68657105	68657105	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:68657105C>T	uc002ari.2	-	4	384	c.297G>A	c.(295-297)CGG>CGA	p.R99R	ITGA11_uc010bib.2_Silent_p.R99R	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	99	FG-GAP 2.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	TGTTGTCTTTCCGCTCGGACA	0.637													31	45					0	0	0.003755	0	0
PAQR5	54852	broad.mit.edu	37	15	69692348	69692348	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:69692348A>G	uc002arz.2	+	8	1023	c.645A>G	c.(643-645)GAA>GAG	p.E215E	PAQR5_uc002asa.2_Silent_p.E215E	NM_017705	NP_060175	Q9NXK6	MPRG_HUMAN	progestin and adipoQ receptor family member V	215	Extracellular (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane	receptor activity|steroid binding			ovary(2)	2						CACAAAATGAAGCCACCTCGT	0.532													32	69					0	0	0.003271	0	0
THSD4	79875	broad.mit.edu	37	15	71433893	71433893	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:71433893C>T	uc002atb.1	+	1	106	c.27C>T	c.(25-27)CTC>CTT	p.L9L		NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	9						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TGGGGTCTCTCAGGTAAGTGA	0.393													7	21					0	0	0.004482	0	0
THSD4	79875	broad.mit.edu	37	15	71534994	71534994	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:71534994G>A	uc002atb.1	+	4	550	c.471G>A	c.(469-471)AGG>AGA	p.R157R	THSD4_uc002atd.1_5'UTR	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	157	TSP type-1 1.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TTAGGAGCAGGACCCGTGGTA	0.517													102	190					0	0	0.014410	0	0
THSD4	79875	broad.mit.edu	37	15	72020956	72020956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:72020956G>A	uc002atb.1	+	8	1505	c.1426G>A	c.(1426-1428)GAG>AAG	p.E476K	THSD4_uc002atd.1_Missense_Mutation_p.E150K|THSD4_uc010ukg.1_Missense_Mutation_p.E116K|THSD4_uc002ate.2_Missense_Mutation_p.E116K	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	476						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						AGGAAAATACGAGGGCGGAGG	0.507													30	149					0	0	0.006320	0	0
PKM2	5315	broad.mit.edu	37	15	72502030	72502030	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:72502030G>A	uc002atx.1	-	5	790	c.549C>T	c.(547-549)CTC>CTT	p.L183L	PKM2_uc002ats.1_5'Flank|PKM2_uc002att.1_5'Flank|PKM2_uc002atu.1_5'UTR|PKM2_uc010bit.1_Silent_p.L188L|PKM2_uc010uki.1_Silent_p.L257L|PKM2_uc002atv.1_Silent_p.L218L|PKM2_uc002atw.1_Silent_p.L183L|PKM2_uc002aty.1_Silent_p.L183L|PKM2_uc010ukj.1_Silent_p.L168L|PKM2_uc010ukk.1_Silent_p.L109L|PKM2_uc010biu.1_Silent_p.L204L|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	183					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	GCTTCACCTGGAGAGAAATAA	0.473													69	131					0	0	0.014410	0	0
PARP6	56965	broad.mit.edu	37	15	72543556	72543556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:72543556G>A	uc002auc.2	-	16	1759	c.1300C>T	c.(1300-1302)CTC>TTC	p.L434F	PARP6_uc002aua.2_Missense_Mutation_p.L279F|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.L434F	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	434	PARP catalytic.						NAD+ ADP-ribosyltransferase activity				0						ACCCTGCTGAGAGGTAGTTTG	0.413													41	55					0	0	0.014410	0	0
NEO1	4756	broad.mit.edu	37	15	73590734	73590734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:73590734C>T	uc002avm.3	+	27	4089	c.3947C>T	c.(3946-3948)TCG>TTG	p.S1316L	NEO1_uc010ukx.1_Missense_Mutation_p.S1305L|NEO1_uc010uky.1_Missense_Mutation_p.S1263L|NEO1_uc010ukz.1_Missense_Mutation_p.S729L|NEO1_uc002avn.3_Missense_Mutation_p.S954L	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1316	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CCAGCCTCTTCGTCTCAAACA	0.493													25	43					0	0	0.003954	0	0
TBC1D21	161514	broad.mit.edu	37	15	74178861	74178861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:74178861G>A	uc002avz.2	+	8	768	c.685G>A	c.(685-687)GGT>AGT	p.G229S	TBC1D21_uc010ulc.1_Missense_Mutation_p.G193S	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	229	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(2)	2						AGAAGGGAAGGGTGCAGGGGC	0.557													24	41					0	0	0.003954	0	0
TBC1D21	161514	broad.mit.edu	37	15	74181416	74181416	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:74181416C>T	uc002avz.2	+	11	1068	c.985C>T	c.(985-987)CAG>TAG	p.Q329*	TBC1D21_uc010ulc.1_Nonsense_Mutation_p.Q293*	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	329						intracellular	Rab GTPase activator activity			ovary(2)	2						CTAGGTTCCTCAGACATTAAA	0.552													11	23					0	0	0.001855	0	0
LOXL1	4016	broad.mit.edu	37	15	74235199	74235199	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:74235199C>T	uc002awc.1	+	2	1443	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L		NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	369					protein deamination	extracellular space	copper ion binding				0						CTCCAGGTCTCCCTGACTTGG	0.582													74	132					0	0	0.014410	0	0
STRA6	64220	broad.mit.edu	37	15	74474685	74474685	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:74474685A>C	uc002axk.2	-	15	1599	c.1417T>G	c.(1417-1419)TGG>GGG	p.W473G	STRA6_uc002axi.2_Missense_Mutation_p.W282G|STRA6_uc010ulh.1_Missense_Mutation_p.W511G|STRA6_uc002axj.2_Missense_Mutation_p.W512G|STRA6_uc010bji.2_Missense_Mutation_p.W473G|STRA6_uc002axl.2_Missense_Mutation_p.W405G|STRA6_uc002axm.2_Missense_Mutation_p.W473G|STRA6_uc002axn.2_Missense_Mutation_p.W464G|STRA6_uc010uli.1_Missense_Mutation_p.W510G|STRA6_uc010bjj.1_RNA	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	473	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						TTCACTCACCACGAGGACTCC	0.602													15	26					0	0	0.003163	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042330	75042330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:75042330C>T	uc002ayr.1	+	2	315	c.251C>T	c.(250-252)CCC>CTC	p.P84L		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	84					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GGCTCCACGCCCGTGCTGGTG	0.667													24	21					0	0	0.003330	0	0
C15orf39	56905	broad.mit.edu	37	15	75500890	75500890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:75500890C>T	uc002azp.3	+	2	2821	c.2501C>T	c.(2500-2502)CCC>CTC	p.P834L	C15orf39_uc002azq.3_Missense_Mutation_p.P834L|C15orf39_uc002azr.3_Missense_Mutation_p.P232L	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	834											0						TGCCCCTTCCCCCATGTGGTG	0.672													3	9					0	0	0.004672	0	0
CHRNA5	1138	broad.mit.edu	37	15	78873238	78873238	+	Silent	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:78873238T>A	uc002bdy.2	+	2	354	c.192T>A	c.(190-192)CCT>CCA	p.P64P	CHRNA5_uc002bdz.2_Silent_p.P64P	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	64	Extracellular (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GGGTTCGTCCTGTGGAACACC	0.343													22	40					0	0	0.012319	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921781	78921781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:78921781G>A	uc002bed.1	-	5	978	c.866C>T	c.(865-867)TCC>TTC	p.S289F	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.S107F	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	289	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CACATCGAGGGAGGTGGGTGG	0.572													30	47					0	0	0.010818	0	0
RASGRF1	5923	broad.mit.edu	37	15	79298706	79298706	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:79298706G>A	uc002beq.2	-	15	2311	c.1936C>T	c.(1936-1938)CTG>TTG	p.L646L	RASGRF1_uc002bep.2_Silent_p.L633L|RASGRF1_uc010blm.1_Silent_p.L555L|RASGRF1_uc002ber.3_Silent_p.L633L|RASGRF1_uc010unh.1_Silent_p.L41L	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	646	N-terminal Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CGGATCTGCAGCACTTTGCAG	0.557													27	52					0	0	0.004656	0	0
KIAA1024	23251	broad.mit.edu	37	15	79755471	79755471	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:79755471C>T	uc002bew.1	+	3	2436	c.2361C>T	c.(2359-2361)TTC>TTT	p.F787F	KIAA1024_uc010unk.1_Silent_p.F787F	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	787						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						AAGATGGCTTCCTGGTGGAGC	0.602													23	44					0	0	0.012319	0	0
C15orf37	283687	broad.mit.edu	37	15	80215371	80215371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:80215371G>A	uc002bfb.2	+	1	259	c.256G>A	c.(256-258)GAG>AAG	p.E86K	ST20_uc002bfa.3_Intron	NM_175898	NP_787094			RecName: Full=Putative uncharacterized protein C15orf37;												0						AGTACCCGCCGAGAGCGGACC	0.532													11	11					0	0	0.010729	0	0
IL16	3603	broad.mit.edu	37	15	81578072	81578073	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:81578072_81578073CC>TT	uc002bgh.3	+	10	1609_1610	c.1233_1234CC>TT	c.(1231-1236)TCCCCT>TCTTCT	p.P412S	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.P412S|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.P454S|IL16_uc002bgg.2_Missense_Mutation_p.P412S|IL16_uc002bgi.1_5'UTR	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	412	PDZ 2.|Interaction with GRIN2A.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TCAGTGATTCCCCTGTGCACTG	0.505													36	55					0	0	0.004672	0	0
ZNF592	9640	broad.mit.edu	37	15	85342003	85342003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:85342003C>T	uc002bld.2	+	8	3257	c.2921C>T	c.(2920-2922)GCC>GTC	p.A974V	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	974					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGGGTGGAAGCCAGGCCGCGG	0.647													8	10					0	0	0.003080	0	0
AGBL1	123624	broad.mit.edu	37	15	86809611	86809611	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:86809611G>A	uc002blz.1	+	11	1616	c.1536G>A	c.(1534-1536)AGG>AGA	p.R512R	AGBL1_uc002bma.1_Silent_p.R243R|AGBL1_uc002bmb.1_Silent_p.R206R	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	512					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TCAGGATCAGGATATTTGAGG	0.438													5	10					0	0	0.001984	0	0
ANPEP	290	broad.mit.edu	37	15	90342704	90342704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:90342704C>T	uc002bop.3	-	13	2198	c.1906G>A	c.(1906-1908)GAA>AAA	p.E636K		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	636	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CAGTTCTCTTCGTCGTAGTTC	0.587													26	43					0	0	0.003330	0	0
CRTC3	64784	broad.mit.edu	37	15	91150629	91150629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:91150629C>T	uc002bpp.2	+	6	602	c.496C>T	c.(496-498)CTT>TTT	p.L166F	CRTC3_uc002bpo.2_Missense_Mutation_p.L166F	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	166					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			TGATTCTGCTCTTCACACGAG	0.522			T	MAML2	salivary gland mucoepidermoid								41	65					0	0	0.014410	0	0
BLM	641	broad.mit.edu	37	15	91292641	91292641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:91292641C>T	uc002bpr.2	+	3	240	c.143C>T	c.(142-144)TCT>TTT	p.S48F	BLM_uc010uqh.1_Missense_Mutation_p.S48F|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Missense_Mutation_p.S48F	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	48					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			AACAATGTATCTGTAACTAAT	0.333			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				150	273					0	0	0.014410	0	0
MAN2A2	4122	broad.mit.edu	37	15	91461493	91461493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:91461493C>T	uc010bnz.2	+	21	3179	c.3064C>T	c.(3064-3066)CCG>TCG	p.P1022S	MAN2A2_uc002bqc.2_Missense_Mutation_p.P1022S|MAN2A2_uc010uql.1_Missense_Mutation_p.P684S|MAN2A2_uc010uqm.1_Missense_Mutation_p.P601S|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1022					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CCTGAACGCCCCGGCGCTCGC	0.592													223	457					0	0	0.014410	0	0
FAM174B	400451	broad.mit.edu	37	15	93173526	93173526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:93173526G>A	uc010boe.2	-	2	536	c.394C>T	c.(394-396)CCA>TCA	p.P132S	FAM174B_uc002bsl.3_RNA	NM_207446	NP_997329	Q3ZCQ3	F174B_HUMAN	hypothetical protein LOC400451	132	Cytoplasmic (Potential).					integral to membrane					0						CGCTCTGCTGGAGTGGTGATG	0.473													9	36					0	0	0.006214	0	0
SYNM	23336	broad.mit.edu	37	15	99670306	99670306	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr15:99670306C>T	uc002bup.2	+	6	1861	c.1741C>T	c.(1741-1743)CTA>TTA	p.L581L	SYNM_uc002buo.2_Silent_p.L581L|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	581	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						GCCGATTAGTCTAGAAGTATC	0.552													27	52					0	0	0.004656	0	0
NPRL3	8131	broad.mit.edu	37	16	142606	142606	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:142606G>A	uc002cfr.2	-	11	1248	c.1149C>T	c.(1147-1149)CCC>CCT	p.P383P	NPRL3_uc010uua.1_RNA|NPRL3_uc002cfp.1_RNA|NPRL3_uc002cfq.2_Silent_p.P204P|NPRL3_uc010uub.1_Silent_p.P358P|NPRL3_uc010uuc.1_Silent_p.P305P|NPRL3_uc002cfs.1_Silent_p.P358P	NM_001077350	NP_001070818	Q12980	NPRL3_HUMAN	conserved gene telomeric to alpha globin cluster	383							protein binding			ovary(1)	1						CCTGCACAGCGGGGGCCAGGG	0.567													9	8					0	0	0.004482	0	0
AXIN1	8312	broad.mit.edu	37	16	396430	396431	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:396430_396431GG>AA	uc002cgp.1	-	2	772_773	c.595_596CC>TT	c.(595-597)CCC>TTC	p.P199F	AXIN1_uc002cgq.1_Missense_Mutation_p.P199F	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	199	RGS.				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				AAGGAAGGAGGGATAGGTGTTT	0.51											OREG0003698	type=REGULATORY REGION|Gene=AXIN1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	38	34					0	0	0.004672	0	0
FBXL16	146330	broad.mit.edu	37	16	746788	746788	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:746788C>T	uc002cjc.2	-	3	821	c.618G>A	c.(616-618)ACG>ACA	p.T206T	FBXL16_uc002cja.2_5'Flank|FBXL16_uc002cjb.2_5'Flank	NM_153350	NP_699181	Q8N461	FXL16_HUMAN	F-box and leucine-rich repeat protein 16	206											0		Hepatocellular(780;0.0218)				GGCCTGCGTCCGTGATGGTGG	0.632													11	22					0	0	0.010729	0	0
FBXL16	146330	broad.mit.edu	37	16	746997	746997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:746997G>A	uc002cjc.2	-	3	612	c.409C>T	c.(409-411)CTC>TTC	p.L137F	FBXL16_uc002cja.2_5'Flank|FBXL16_uc002cjb.2_5'Flank	NM_153350	NP_699181	Q8N461	FXL16_HUMAN	F-box and leucine-rich repeat protein 16	137	F-box.										0		Hepatocellular(780;0.0218)				ACCGGCGTGAGGCCTGCCCAG	0.632													15	22					0	0	0.004007	0	0
CHTF18	63922	broad.mit.edu	37	16	843212	843212	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:843212G>A	uc002cke.3	+	14	1803	c.1740G>A	c.(1738-1740)AAG>AAA	p.K580K	CHTF18_uc010bre.1_RNA|CHTF18_uc002ckf.3_Silent_p.K608K|CHTF18_uc010brf.2_Silent_p.K162K|CHTF18_uc002ckg.3_Silent_p.K98K	NM_022092	NP_071375	Q8WVB6	CTF18_HUMAN	CTF18, chromosome transmission fidelity factor	580					cell cycle|DNA replication	nucleus	ATP binding|DNA binding|nucleoside-triphosphatase activity			kidney(1)	1		Hepatocellular(780;0.00335)				TGGGCCTCAAGGACCAGCGCA	0.687													8	7					0	0	0.004482	0	0
PTX4	390667	broad.mit.edu	37	16	1537410	1537410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:1537410C>T	uc010uvf.1	-	2	688	c.688G>A	c.(688-690)GAG>AAG	p.E230K		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	235						extracellular region	metal ion binding				0						GCTGGAGGCTCCCGCCTCCCT	0.662													32	22					0	0	0.012213	0	0
PKD1	5310	broad.mit.edu	37	16	2162886	2162886	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2162886G>A	uc002cos.1	-	13	3273	c.3064C>T	c.(3064-3066)CTG>TTG	p.L1022L	PKD1_uc002cot.1_Silent_p.L1022L	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1022	Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GAGACCTGCAGACCCTGCATC	0.642													11	31					0	0	0.010729	0	0
DNASE1L2	1775	broad.mit.edu	37	16	2287545	2287545	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2287545G>A	uc002cpo.2	+	4	880	c.486G>A	c.(484-486)CAG>CAA	p.Q162Q	DNASE1L2_uc002cpn.2_Silent_p.Q141Q|DNASE1L2_uc002cpp.2_Silent_p.Q162Q|DNASE1L2_uc002cpq.2_Silent_p.Q162Q	NM_001374	NP_001365	Q92874	DNSL2_HUMAN	deoxyribonuclease I-like 2 precursor	162					DNA catabolic process	extracellular region	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters|protein binding				0						CAGCAGCACAGAACCTGGTGC	0.701													3	4					0	0	0.004672	0	0
NTN3	4917	broad.mit.edu	37	16	2522769	2522769	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2522769C>T	uc002cqj.2	+	2	1199	c.996C>T	c.(994-996)CGC>CGT	p.R332R	TBC1D24_uc002cqk.2_5'Flank|TBC1D24_uc002cql.2_5'Flank	NM_006181	NP_006172	O00634	NET3_HUMAN	netrin 3 precursor	332	Laminin EGF-like 2.				axon guidance|muscle cell differentiation|positive regulation of muscle cell differentiation	proteinaceous extracellular matrix				central_nervous_system(1)	1						TGTCCGGCCGCCGCAGCGGGG	0.687													13	39					0	0	0.004990	0	0
PDPK1	5170	broad.mit.edu	37	16	2636802	2636802	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2636802C>T	uc002cqs.2	+	11	1395	c.1251C>T	c.(1249-1251)CAC>CAT	p.H417H	PDPK1_uc002cqt.2_Silent_p.H290H|PDPK1_uc010bsn.2_Silent_p.H417H|PDPK1_uc002cqu.2_Silent_p.H390H	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	417					actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	AGTACATTCACGATCTGGACT	0.542													27	74					0	0	0.008361	0	0
SRRM2	23524	broad.mit.edu	37	16	2814308	2814308	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2814308T>C	uc002crk.2	+	11	4328	c.3779T>C	c.(3778-3780)CTT>CCT	p.L1260P	SRRM2_uc002crj.1_Missense_Mutation_p.L1164P|SRRM2_uc002crl.1_Missense_Mutation_p.L1260P|SRRM2_uc010bsu.1_Missense_Mutation_p.L1164P	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1260	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCTTCAGAACTTAAAGAAATG	0.443													40	138					0	0	0.006230	0	0
PRSS41	360226	broad.mit.edu	37	16	2854948	2854948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2854948G>A	uc010uwi.1	+	5	772	c.772G>A	c.(772-774)GAT>AAT	p.D258N		NM_001135086	NP_001128558	Q7RTY9	PRS41_HUMAN	testis-specific serine protease 1 precursor	258	Peptidase S1.				proteolysis	anchored to membrane|plasma membrane	serine-type endopeptidase activity				0						CTGTGACAAGGATGGACTGTG	0.592													2	0					0	0	0.004672	0	0
PRSS22	64063	broad.mit.edu	37	16	2903113	2903113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:2903113C>T	uc002cry.1	-	6	1001	c.935G>A	c.(934-936)GGG>GAG	p.G312E	PRSS22_uc002crz.1_Missense_Mutation_p.G202E	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	312					proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						CGCGGCGGCCCCAGAGCCCTG	0.731													4	6					0	0	0.000602	0	0
CLDN6	9074	broad.mit.edu	37	16	3065567	3065567	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:3065567C>T	uc002csu.3	-	2	516	c.456G>A	c.(454-456)GTG>GTA	p.V152V		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	152	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGGCCTCAGCCACCAGGGGGT	0.622													7	10					0	0	0.001984	0	0
ZNF174	7727	broad.mit.edu	37	16	3458558	3458558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:3458558C>T	uc002cvc.2	+	3	1678	c.863C>T	c.(862-864)CCC>CTC	p.P288L		NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	288					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						ATCAGCAGCCCCCTAAAAAGC	0.522													21	50					0	0	0.012319	0	0
BTBD12	84464	broad.mit.edu	37	16	3639678	3639678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:3639678G>A	uc002cvp.2	-	12	4588	c.3961C>T	c.(3961-3963)CCG>TCG	p.P1321S		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1321	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CATGAGGACGGTGTCTGGGGC	0.632								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				43	117					0	0	0.009718	0	0
CREBBP	1387	broad.mit.edu	37	16	3824617	3824617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:3824617G>A	uc002cvv.2	-	12	2440	c.2236C>T	c.(2236-2238)CCA>TCA	p.P746S	CREBBP_uc002cvw.2_Missense_Mutation_p.P708S	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	746					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TGGTTCATTGGGGAGGCTGCA	0.532			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				12	61					0	0	0.013537	0	0
PPL	5493	broad.mit.edu	37	16	4934167	4934167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:4934167C>T	uc002cyd.1	-	22	4579	c.4489G>A	c.(4489-4491)GAG>AAG	p.E1497K		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1497	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						ACCACCTTCTCCTTGACCTCC	0.632													24	26					0	0	0.006320	0	0
GRIN2A	2903	broad.mit.edu	37	16	9892299	9892299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:9892299C>T	uc002czo.3	-	11	2739	c.2191G>A	c.(2191-2193)GAT>AAT	p.D731N	GRIN2A_uc010uym.1_Missense_Mutation_p.D731N|GRIN2A_uc010uyn.1_Missense_Mutation_p.D574N|GRIN2A_uc002czr.3_Missense_Mutation_p.D731N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	731	Extracellular (Potential).	Glutamate; via amide nitrogen (By similarity).			response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACTGCGGCATCGTAGATGAAA	0.562													10	37					0	0	0.013537	0	0
GRIN2A	2903	broad.mit.edu	37	16	9916226	9916226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:9916226C>T	uc002czo.3	-	10	2611	c.2063G>A	c.(2062-2064)GGA>GAA	p.G688E	GRIN2A_uc010uym.1_Missense_Mutation_p.G688E|GRIN2A_uc010uyn.1_Missense_Mutation_p.G531E|GRIN2A_uc002czr.3_Missense_Mutation_p.G688E	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	688	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTCCGTGCTTCCATTAGGCAC	0.353													13	41					0	0	0.002450	0	0
GRIN2A	2903	broad.mit.edu	37	16	9923318	9923318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:9923318C>T	uc002czo.3	-	9	2517	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K	GRIN2A_uc010uym.1_Missense_Mutation_p.E657K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E500K|GRIN2A_uc002czr.3_Missense_Mutation_p.E657K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	657	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCCACAAATTCCTCTTGGATC	0.502													10	44					0	0	0.006214	0	0
GRIN2A	2903	broad.mit.edu	37	16	9934887	9934887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:9934887G>A	uc002czo.3	-	6	1951	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F	GRIN2A_uc010uym.1_Missense_Mutation_p.S468F|GRIN2A_uc010uyn.1_Missense_Mutation_p.S311F|GRIN2A_uc002czr.3_Missense_Mutation_p.S468F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	468	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CACAGTTCTGGAAAGCTTCTT	0.378													20	47					0	0	0.008871	0	0
GRIN2A	2903	broad.mit.edu	37	16	10032005	10032005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:10032005G>A	uc002czo.3	-	3	1366	c.818C>T	c.(817-819)CCA>CTA	p.P273L	GRIN2A_uc010uym.1_Missense_Mutation_p.P273L|GRIN2A_uc010uyn.1_Missense_Mutation_p.P116L|GRIN2A_uc002czr.3_Missense_Mutation_p.P273L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	273	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GAGTCCCGATGGAAACTCTTT	0.557													23	32					0	0	0.002780	0	0
CIITA	4261	broad.mit.edu	37	16	10995407	10995407	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:10995407G>A	uc002dai.3	+	6	606	c.473G>A	c.(472-474)TGG>TAG	p.W158*	CIITA_uc002daj.3_Nonsense_Mutation_p.W159*|CIITA_uc002dak.3_Nonsense_Mutation_p.W158*|CIITA_uc002dag.2_Nonsense_Mutation_p.W158*|CIITA_uc002dah.2_Nonsense_Mutation_p.W159*|CIITA_uc010bup.1_Nonsense_Mutation_p.W158*	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	158					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CTGAAGCACTGGAAGCCAGGT	0.607			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								10	17					0	0	0.010729	0	0
CLEC16A	23274	broad.mit.edu	37	16	11097026	11097026	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:11097026G>A	uc002dao.2	+	11	1397	c.1167G>A	c.(1165-1167)AAG>AAA	p.K389K	CLEC16A_uc002dan.3_Silent_p.K387K	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	389										ovary(1)|central_nervous_system(1)	2						GGGTGCAAAAGAGACCCAACT	0.547													16	34					0	0	0.004990	0	0
NOMO1	23420	broad.mit.edu	37	16	14970343	14970343	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:14970343C>T	uc002dcv.2	+	21	2550	c.2484C>T	c.(2482-2484)ATC>ATT	p.I828I		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	828	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						CACCGCTGATCACAGTCTTTA	0.542													52	53					0	0	0.014410	0	0
MYH11	4629	broad.mit.edu	37	16	15818560	15818560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:15818560C>T	uc002ddy.2	-	30	4167	c.4060G>A	c.(4060-4062)GAG>AAG	p.E1354K	MYH11_uc002ddv.2_Missense_Mutation_p.E1361K|MYH11_uc002ddw.2_Missense_Mutation_p.E1354K|MYH11_uc002ddx.2_Missense_Mutation_p.E1361K|MYH11_uc010bvg.2_Missense_Mutation_p.E1186K|NDE1_uc010uzy.1_3'UTR|NDE1_uc002dds.2_3'UTR|MYH11_uc010bvh.2_Missense_Mutation_p.E60K|NDE1_uc002ddz.1_RNA	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1354	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TCCATCTCCTCGTCCAGCTGG	0.592			T	CBFB	AML								76	85					0	0	0.014410	0	0
ABCC1	4363	broad.mit.edu	37	16	16228264	16228264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:16228264C>T	uc010bvi.2	+	28	4199	c.4024C>T	c.(4024-4026)CGG>TGG	p.R1342W	ABCC1_uc010bvj.2_Missense_Mutation_p.R1283W|ABCC1_uc010bvk.2_Missense_Mutation_p.R1286W|ABCC1_uc010bvl.2_Missense_Mutation_p.R1342W|ABCC1_uc010bvm.2_Missense_Mutation_p.R1227W|ABCC1_uc002del.3_Missense_Mutation_p.R1236W	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	1342	ABC transporter 2.|Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GGGCTTATTTCGGATCAACGA	0.597													32	55					0	0	0.009535	0	0
ABCC6	368	broad.mit.edu	37	16	16297280	16297281	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:16297280_16297281GG>AA	uc002den.3	-	8	1021_1022	c.984_985CC>TT	c.(982-987)GTCCCC>GTTTCC	p.P329S	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Missense_Mutation_p.P341S	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	329	Extracellular (By similarity).|ABC transmembrane type-1 1.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		AGCAGCTTGGGGACAGTGAACC	0.594													21	65					0	0	0.004672	0	0
XYLT1	64131	broad.mit.edu	37	16	17228497	17228497	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:17228497G>A	uc002dfa.2	-	9	1945	c.1860C>T	c.(1858-1860)TAC>TAT	p.Y620Y		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	620	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						TACCTGCAGGGTAGTTCCCGT	0.567													28	96					0	0	0.005443	0	0
TMC7	79905	broad.mit.edu	37	16	19020543	19020543	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:19020543C>T	uc002dfq.2	+	2	247	c.117C>T	c.(115-117)TTC>TTT	p.F39F	TMC7_uc010vao.1_Silent_p.F39F|TMC7_uc002dfp.2_Silent_p.F39F|TMC7_uc010vap.1_5'UTR	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	39	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						CTGTGAACTTCCTCCAAGAAT	0.478													43	34					0	0	0.008740	0	0
TMC5	79838	broad.mit.edu	37	16	19505675	19505676	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:19505675_19505676GG>AA	uc002dgc.3	+	20	3667_3668	c.2918_2919GG>AA	c.(2917-2919)AGG>AAA	p.R973K	TMC5_uc010vaq.1_Missense_Mutation_p.R921K|TMC5_uc002dgb.3_Missense_Mutation_p.R915K|TMC5_uc010var.1_Missense_Mutation_p.R973K|TMC5_uc002dge.3_Missense_Mutation_p.R727K|TMC5_uc002dgf.3_Missense_Mutation_p.R656K|TMC5_uc002dgg.3_Missense_Mutation_p.R614K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	973	Extracellular (Potential).					integral to membrane				skin(1)	1						GTTCTGGAAAGGAGAGAGGTGG	0.495													18	55					0	0	0.004672	0	0
CP110	9738	broad.mit.edu	37	16	19539282	19539282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:19539282C>T	uc002dgl.3	+	2	326	c.79C>T	c.(79-81)CCT>TCT	p.P27S	CP110_uc002dgk.3_Missense_Mutation_p.P27S			O43303	CP110_HUMAN	RecName: Full=Centrosomal protein of 110 kDa;          Short=Cep110;	27	CEP97 binding.				centriole replication|G2/M transition of mitotic cell cycle|regulation of cytokinesis	centriole|cytosol	protein binding				0						GAGCTTTCTCCCTGCTCAGTC	0.403													20	26					0	0	0.010504	0	0
C16orf62	57020	broad.mit.edu	37	16	19592973	19592973	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:19592973C>T	uc002dgn.1	+	7	649	c.637C>T	c.(637-639)CAG>TAG	p.Q213*	C16orf62_uc002dgo.1_Nonsense_Mutation_p.Q213*|C16orf62_uc002dgp.1_5'UTR|C16orf62_uc010vas.1_Nonsense_Mutation_p.Q87*|C16orf62_uc002dgm.1_Nonsense_Mutation_p.Q213*	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	213						integral to membrane				ovary(1)	1						AATAGTCATCCAGGTTAGCTC	0.498													22	44					0	0	0.012319	0	0
GP2	2813	broad.mit.edu	37	16	20322599	20322599	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:20322599G>A	uc002dgv.2	-	12	1643	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F	GP2_uc002dgw.2_Silent_p.F517F|GP2_uc002dgx.2_Silent_p.F373F|GP2_uc002dgy.2_Silent_p.F370F	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	520						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AGGCCACCAGGAACCCTGAAA	0.502													9	53					0	0	0.004482	0	0
ACSM5	54988	broad.mit.edu	37	16	20451131	20451131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:20451131G>A	uc002dhe.2	+	13	1693	c.1546G>A	c.(1546-1548)GCA>ACA	p.A516T		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	516					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						GGTGGTAAAGGCATTTATAGT	0.448													8	83					0	0	0.006214	0	0
ACSM2B	348158	broad.mit.edu	37	16	20548646	20548646	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:20548646C>T	uc002dhj.3	-	15	1878	c.1668G>A	c.(1666-1668)GGG>GGA	p.G556G	ACSM2B_uc002dhk.3_Silent_p.G556G	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	556					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GTTGAATTTTCCCTGTGACAG	0.473													42	133					0	0	0.006999	0	0
ACSM2B	348158	broad.mit.edu	37	16	20563565	20563565	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:20563565C>T	uc002dhj.3	-	7	1005	c.795G>A	c.(793-795)TGG>TGA	p.W265*	ACSM2B_uc002dhk.3_Nonsense_Mutation_p.W265*|ACSM2B_uc010bwf.1_Nonsense_Mutation_p.W265*	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	265					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TGTTCAGTATCCAACCTGTGT	0.433													34	126					0	0	0.013726	0	0
DNAH3	55567	broad.mit.edu	37	16	20974677	20974678	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:20974677_20974678CC>TT	uc010vbe.1	-	53	10528_10529	c.10528_10529GG>AA	c.(10528-10530)GGA>AAA	p.G3510K	DNAH3_uc010vbd.1_Missense_Mutation_p.G945K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3510	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATTGTAGGATCCCTGGAGATCG	0.505													28	22					0	0	0.004672	0	0
DNAH3	55567	broad.mit.edu	37	16	21011568	21011568	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:21011568C>T	uc010vbe.1	-	43	6399	c.6399G>A	c.(6397-6399)GGG>GGA	p.G2133G		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2133	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTGCTTTCTTCCCTATGGGAG	0.517													26	32					0	0	0.007291	0	0
DNAH3	55567	broad.mit.edu	37	16	21157305	21157305	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:21157305C>T	uc010vbe.1	-	2	222	c.222G>A	c.(220-222)CAG>CAA	p.Q74Q	DNAH3_uc002die.2_Silent_p.Q45Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	74	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GTGTGCATACCTGATAGAGTC	0.552													14	44					0	0	0.003163	0	0
OTOA	146183	broad.mit.edu	37	16	21709162	21709162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:21709162C>T	uc002djh.2	+	9	807	c.806C>T	c.(805-807)TCG>TTG	p.S269L	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.S190L	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	269					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GTTCACCTATCGTTTGAAGAA	0.323													30	50					0	0	0.009535	0	0
SCNN1G	6340	broad.mit.edu	37	16	23223406	23223406	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:23223406G>T	uc002dlm.1	+	8	1367	c.1228G>T	c.(1228-1230)GCC>TCC	p.A410S		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	410	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	ATGTGGGTGTGCCCAGTACAG	0.542													32	42					5.90632e-09	6.49204e-09	0.012213	1	0
SCNN1B	6338	broad.mit.edu	37	16	23364349	23364349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:23364349C>T	uc002dln.2	+	3	715	c.539C>T	c.(538-540)TCA>TTA	p.S180L		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	180	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AGCTCAGCATCAGAAAAGATC	0.522													22	75					0	0	0.003330	0	0
COG7	91949	broad.mit.edu	37	16	23428399	23428399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:23428399G>A	uc002dlo.2	-	9	1369	c.1181C>T	c.(1180-1182)TCC>TTC	p.S394F		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	394					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		CTTGTTCACGGAGTGGCTCAG	0.532													14	32					0	0	0.003163	0	0
UBFD1	56061	broad.mit.edu	37	16	23581893	23581893	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:23581893G>A	uc002dlv.2	+	7	1114	c.912G>A	c.(910-912)GGG>GGA	p.G304G		NM_019116	NP_061989	O14562	UBFD1_HUMAN	ubiquitin-binding protein homolog	304											0				GBM - Glioblastoma multiforme(48;0.0331)		CTGTGCTGGGGAAATGGCAGT	0.522													15	78					0	0	0.006122	0	0
PALB2	79728	broad.mit.edu	37	16	23640972	23640972	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:23640972A>G	uc002dlx.1	-	5	2703	c.2503T>C	c.(2503-2505)TCC>CCC	p.S835P		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	835					double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		TGTTCGACGGAATGTTTATGC	0.448			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				14	65					0	0	0.004007	0	0
PRKCB	5579	broad.mit.edu	37	16	24166021	24166021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:24166021G>A	uc002dmd.2	+	10	1279	c.1082G>A	c.(1081-1083)CGA>CAA	p.R361Q	PRKCB_uc002dme.2_Missense_Mutation_p.R361Q	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	361	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CTTTCAGAACGAAAAGGCACA	0.507													7	32					0	0	0.010729	0	0
PRKCB	5579	broad.mit.edu	37	16	24192149	24192149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:24192149G>A	uc002dmd.2	+	13	1630	c.1433G>A	c.(1432-1434)GGA>GAA	p.G478E	PRKCB_uc002dme.2_Missense_Mutation_p.G478E	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	478	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GATTCTGAGGGACACATCAAG	0.448													11	74					0	0	0.010729	0	0
CACNG3	10368	broad.mit.edu	37	16	24372902	24372902	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:24372902C>T	uc002dmf.2	+	4	1866	c.666C>T	c.(664-666)GCC>GCT	p.A222A		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	222					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CTACTTTTGCCCGCCTCCCAC	0.527													12	46					0	0	0.013537	0	0
LCMT1	51451	broad.mit.edu	37	16	25182046	25182046	+	Silent	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:25182046C>A	uc002dnx.1	+	9	962	c.804C>A	c.(802-804)CTC>CTA	p.L268L	LCMT1_uc002dny.1_Silent_p.L213L|LCMT1_uc002dnz.1_Silent_p.L168L|LCMT1_uc002doa.1_Silent_p.L113L	NM_016309	NP_057393	Q9UIC8	LCMT1_HUMAN	leucine carboxyl methyltransferase 1 isoform a	268							protein binding|protein C-terminal carboxyl O-methyltransferase activity|S-adenosylmethionine-dependent methyltransferase activity				0				GBM - Glioblastoma multiforme(48;0.0336)	L-Leucine(DB00149)	AAGAACGGCTCCTGTCGAATG	0.458													43	56					2.24722e-20	2.49079e-20	0.014410	1	0
IL4R	3566	broad.mit.edu	37	16	27375055	27375055	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:27375055C>T	uc002don.2	+	11	2624	c.2382C>T	c.(2380-2382)TCC>TCT	p.S794S	IL4R_uc002dop.3_Silent_p.S779S|IL4R_uc010bxy.2_Silent_p.S794S|IL4R_uc002doo.2_Silent_p.S634S	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	794	Poly-Ser.|Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						CCTCATCATCCTTCCATCCTG	0.587													18	70					0	0	0.006122	0	0
IL21R	50615	broad.mit.edu	37	16	27460366	27460366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:27460366C>T	uc002doq.1	+	9	1612	c.1379C>T	c.(1378-1380)GCT>GTT	p.A460V	IL21R_uc002dor.1_Missense_Mutation_p.A460V|IL21R_uc002dos.1_Missense_Mutation_p.A460V|uc002dot.2_RNA	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	460	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GAGGACTGGGCTGGGGGACTG	0.667			T	BCL6	NHL								5	40					0	0	0.001984	0	0
GTF3C1	2975	broad.mit.edu	37	16	27495610	27495610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:27495610G>A	uc002dov.1	-	25	3963	c.3923C>T	c.(3922-3924)TCT>TTT	p.S1308F	GTF3C1_uc002dou.2_Missense_Mutation_p.S1308F	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1308						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TTTATCCAAAGACTCTTCAAA	0.468													29	37					0	0	0.007291	0	0
ATXN2L	11273	broad.mit.edu	37	16	28842057	28842057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:28842057C>T	uc002drc.2	+	9	1324	c.1156C>T	c.(1156-1158)CAT>TAT	p.H386Y	uc010vct.1_Intron|ATXN2L_uc010byl.1_Missense_Mutation_p.H386Y|ATXN2L_uc002drb.2_Missense_Mutation_p.H386Y|ATXN2L_uc002dqy.2_Missense_Mutation_p.H386Y|ATXN2L_uc002dra.2_Missense_Mutation_p.H386Y|ATXN2L_uc002dqz.2_Missense_Mutation_p.H386Y|ATXN2L_uc010vdb.1_Missense_Mutation_p.H386Y|ATXN2L_uc002dre.2_Missense_Mutation_p.H386Y|ATXN2L_uc002drf.2_5'UTR	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	386						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TGGCCCTCACCATCTGGACAA	0.627													18	17					0	0	0.006122	0	0
ATXN2L	11273	broad.mit.edu	37	16	28844625	28844625	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:28844625C>T	uc002drc.2	+	14	2073	c.1905C>T	c.(1903-1905)CCC>CCT	p.P635P	uc010vct.1_Intron|ATXN2L_uc010byl.1_Silent_p.P611P|ATXN2L_uc002drb.2_Silent_p.P635P|ATXN2L_uc002dqy.2_Silent_p.P635P|ATXN2L_uc002dra.2_Silent_p.P635P|ATXN2L_uc002dqz.2_Silent_p.P635P|ATXN2L_uc010vdb.1_Silent_p.P641P|ATXN2L_uc002dre.2_Silent_p.P635P|ATXN2L_uc002drf.2_Silent_p.P44P|ATXN2L_uc002drg.2_5'Flank	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	635						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTGGCAGCCCCCCGGTGGGCC	0.632													14	37					0	0	0.002450	0	0
ATXN2L	11273	broad.mit.edu	37	16	28846987	28846987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:28846987C>T	uc002drc.2	+	21	2971	c.2803C>T	c.(2803-2805)CCT>TCT	p.P935S	uc010vct.1_Intron|ATXN2L_uc002drb.2_Missense_Mutation_p.P935S|ATXN2L_uc002dqy.2_Missense_Mutation_p.P935S|ATXN2L_uc002dra.2_Missense_Mutation_p.P935S|ATXN2L_uc002dqz.2_Missense_Mutation_p.P935S|ATXN2L_uc010vdb.1_Missense_Mutation_p.P941S|ATXN2L_uc002dre.2_Missense_Mutation_p.P935S|ATXN2L_uc002drf.2_Missense_Mutation_p.P344S|ATXN2L_uc002drg.2_Missense_Mutation_p.P218S	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	935						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TGCCCAGTCCCCTCAGAGCAG	0.647													12	49					0	0	0.013537	0	0
DOC2A	8448	broad.mit.edu	37	16	30020353	30020353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:30020353C>T	uc002dvm.2	-	5	591	c.491G>A	c.(490-492)GGG>GAG	p.G164E	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Missense_Mutation_p.G164E|DOC2A_uc002dvn.2_Missense_Mutation_p.G164E|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Missense_Mutation_p.G164E|DOC2A_uc002dvp.2_Missense_Mutation_p.G164E|DOC2A_uc002dvq.2_Missense_Mutation_p.G164E	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	164	C2 1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						ATCTGTGATCCCGCTGTAAGT	0.557													15	51					0	0	0.006122	0	0
ITGAL	3683	broad.mit.edu	37	16	30518177	30518177	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:30518177G>A	uc002dyi.3	+	21	2684	c.2508G>A	c.(2506-2508)AAG>AAA	p.K836K	ITGAL_uc002dyj.3_Silent_p.K752K|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	836	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGATGCTGAAGGTGGGTGAGA	0.612													28	74					0	0	0.004656	0	0
BCL7C	9274	broad.mit.edu	37	16	30900257	30900257	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:30900257C>G	uc002dzv.2	-	5	586	c.452G>C	c.(451-453)GGC>GCC	p.G151A	BCL7C_uc002dzt.1_Missense_Mutation_p.G151A|uc002dzu.2_RNA	NM_004765	NP_004756	Q8WUZ0	BCL7C_HUMAN	B-cell CLL/lymphoma 7C	151	Pro-rich.				apoptosis						0			Colorectal(24;0.198)			AGCAGTTATGCCCCCGGGATC	0.587													10	76					0	0	0.001855	0	0
ZNF668	79759	broad.mit.edu	37	16	31075148	31075148	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:31075148G>A	uc010caf.2	-	2	990	c.633C>T	c.(631-633)CTC>CTT	p.L211L	ZNF668_uc002eao.2_Silent_p.L211L|ZNF668_uc010cag.1_Silent_p.L211L	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	211	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						CATGGTTGCGGAGGTCCTTGA	0.662													5	8					0	0	0.000602	0	0
ITGAD	3681	broad.mit.edu	37	16	31424240	31424240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:31424240G>A	uc002ebv.1	+	15	1838	c.1789G>A	c.(1789-1791)GGA>AGA	p.G597R	ITGAD_uc010cap.1_Missense_Mutation_p.G598R	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	597	Potential.|Extracellular (Potential).|FG-GAP 7.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CACCCAGGATGGACTGATGGA	0.652													13	59					0	0	0.001855	0	0
SHCBP1	79801	broad.mit.edu	37	16	46638319	46638319	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:46638319G>T	uc002eec.3	-	6	784	c.744C>A	c.(742-744)CAC>CAA	p.H248Q		NM_024745	NP_079021	Q8NEM2	SHCBP_HUMAN	SHC SH2-domain binding protein 1	248										ovary(1)|breast(1)	2		all_cancers(37;0.00404)|all_epithelial(9;0.00527)|all_lung(18;0.0413)|Lung NSC(13;0.213)				ACAACAGATTGTGGTAGTCAA	0.383													41	64					3.2641e-12	3.60334e-12	0.013114	1	0
ABCC12	94160	broad.mit.edu	37	16	48119552	48119552	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:48119552C>T	uc002efc.1	-	27	4126	c.3780G>A	c.(3778-3780)GGG>GGA	p.G1260G	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1260	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GCTGACGTTCCCCTACTGAGA	0.413													37	45					0	0	0.006230	0	0
ABCC12	94160	broad.mit.edu	37	16	48130803	48130803	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:48130803A>G	uc002efc.1	-	22	3395	c.3049T>C	c.(3049-3051)TAC>CAC	p.Y1017H	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1017	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CAGTTAAAGTAGAGGAGGTGA	0.458													29	34					0	0	0.007291	0	0
TOX3	27324	broad.mit.edu	37	16	52497939	52497939	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:52497939C>T	uc002egw.2	-	3	486	c.315G>A	c.(313-315)CAG>CAA	p.Q105Q	TOX3_uc010vgt.1_Silent_p.Q100Q|TOX3_uc010vgu.1_Silent_p.Q105Q	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	105					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						GAGGGGGAAACTGGGGTGTGA	0.532													30	51					0	0	0.007291	0	0
IRX3	79191	broad.mit.edu	37	16	54318800	54318800	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:54318800C>T	uc002eht.1	-	2	1409	c.993G>A	c.(991-993)CTG>CTA	p.L331L		NM_024336	NP_077312	P78415	IRX3_HUMAN	iroquois homeobox 3	331	Pro-rich.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGCAGGGGTCCAGGCTCACGG	0.721													7	8					0	0	0.003080	0	0
IRX6	79190	broad.mit.edu	37	16	55363128	55363128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:55363128C>T	uc002ehy.2	+	5	1771	c.1238C>T	c.(1237-1239)CCC>CTC	p.P413L	IRX6_uc002ehx.2_Missense_Mutation_p.P413L	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	413						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						TTTGGAAACCCCAAGTTTGCC	0.617													10	68					0	0	0.010729	0	0
CCDC135	84229	broad.mit.edu	37	16	57761237	57761237	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:57761237G>A	uc002emi.2	+	15	2201	c.2112G>A	c.(2110-2112)GAG>GAA	p.E704E	CCDC135_uc002emj.2_Silent_p.E704E|CCDC135_uc002emk.2_Silent_p.E639E	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	704	Potential.					cytoplasm				central_nervous_system(1)	1						AGCTTCGAGAGGAAGAGGAGG	0.468													39	72					0	0	0.009718	0	0
CNGB1	1258	broad.mit.edu	37	16	58001151	58001151	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:58001151C>G	uc002emt.2	-	2	105	c.40G>C	c.(40-42)GGG>CGG	p.G14R	CNGB1_uc010cdh.2_Missense_Mutation_p.G14R|CNGB1_uc002emu.2_Missense_Mutation_p.G14R	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	14					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CGAGGGGTCCCTGGGGGCTGA	0.617													3	54					0	0	0.004672	0	0
C16orf57	79650	broad.mit.edu	37	16	58036463	58036463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:58036463C>T	uc002emz.2	+	2	262	c.179C>T	c.(178-180)CCT>CTT	p.P60L	ZNF319_uc002emx.1_5'Flank|C16orf57_uc010via.1_Missense_Mutation_p.P60L|C16orf57_uc002emy.2_RNA|C16orf57_uc010vib.1_Missense_Mutation_p.P60L|C16orf57_uc010vic.1_Missense_Mutation_p.P9L	NM_024598	NP_078874	Q9BQ65	CP057_HUMAN	hypothetical protein LOC79650	60											0						GAGGAGGGGCCTGAAGATGAC	0.572													23	67					0	0	0.014323	0	0
C16orf57	79650	broad.mit.edu	37	16	58043978	58043978	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:58043978C>T	uc002emz.2	+	3	494	c.411C>T	c.(409-411)TTC>TTT	p.F137F	C16orf57_uc010via.1_Silent_p.F137F|C16orf57_uc002emy.2_RNA|C16orf57_uc010vib.1_Silent_p.F137F|C16orf57_uc010vic.1_Silent_p.F86F	NM_024598	NP_078874	Q9BQ65	CP057_HUMAN	hypothetical protein LOC79650	137											0						TCCTCCCCTTCGTGCAGGCTC	0.602													25	33					0	0	0.007291	0	0
PDP2	57546	broad.mit.edu	37	16	66919225	66919225	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:66919225G>A	uc002eqk.1	+	2	1200	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	346					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		TCCCCTGCAGGGCCTTTGGGG	0.572													27	26					0	0	0.005443	0	0
CDH16	1014	broad.mit.edu	37	16	66945091	66945091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:66945091C>T	uc002eql.2	-	14	1991	c.1918G>A	c.(1918-1920)GAT>AAT	p.D640N	CDH16_uc010cdy.2_Missense_Mutation_p.D640N|CDH16_uc002eqm.2_Missense_Mutation_p.D543N	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	640	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		ATACCTGTATCCTGGGCCTCC	0.632													11	17					0	0	0.001855	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67318673	67318673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:67318673C>T	uc002eso.3	+	12	4285	c.1750C>T	c.(1750-1752)CCG>TCG	p.P584S	PLEKHG4_uc002esp.3_Missense_Mutation_p.P391S|PLEKHG4_uc002esq.3_Missense_Mutation_p.P584S|PLEKHG4_uc010cef.2_Missense_Mutation_p.P584S|PLEKHG4_uc002ess.3_Missense_Mutation_p.P584S|PLEKHG4_uc010ceg.2_Missense_Mutation_p.P503S	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	584					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		GCAGGAACGCCCGGGGGTTGT	0.612													8	14					0	0	0.003080	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67322075	67322075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:67322075C>T	uc002eso.3	+	19	5761	c.3226C>T	c.(3226-3228)CGC>TGC	p.R1076C	PLEKHG4_uc002esp.3_Missense_Mutation_p.R883C|PLEKHG4_uc002esq.3_Missense_Mutation_p.R1076C|PLEKHG4_uc010cef.2_Missense_Mutation_p.R1076C|PLEKHG4_uc002ess.3_Missense_Mutation_p.R1076C|PLEKHG4_uc010ceg.2_Missense_Mutation_p.R995C	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	1076					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		TGCAGAAGTTCGCTCTCGGGC	0.607													33	52					0	0	0.009535	0	0
NFATC3	4775	broad.mit.edu	37	16	68260301	68260301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:68260301G>A	uc002evo.1	+	10	3365	c.3155G>A	c.(3154-3156)GGA>GAA	p.G1052E	NFATC3_uc010vkm.1_Missense_Mutation_p.G573E|NFATC3_uc010vkn.1_3'UTR|NFATC3_uc010vkp.1_3'UTR|NFATC3_uc010vkq.1_Missense_Mutation_p.G573E|NFATC3_uc002evm.1_3'UTR|NFATC3_uc002evn.1_3'UTR|NFATC3_uc010vks.1_Missense_Mutation_p.G573E|NFATC3_uc010vkt.1_3'UTR|NFATC3_uc010vkv.1_Missense_Mutation_p.G573E|NFATC3_uc010vkw.1_3'UTR|NFATC3_uc010vky.1_Missense_Mutation_p.G573E|NFATC3_uc010vkz.1_3'UTR|NFATC3_uc010vlb.1_Missense_Mutation_p.G573E|NFATC3_uc010vlc.1_3'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	1052					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		GTTTCCCAAGGAGCAGGGGTG	0.502													18	59					0	0	0.012319	0	0
PRMT7	54496	broad.mit.edu	37	16	68373461	68373461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:68373461G>A	uc002evy.1	+	8	1017	c.741G>A	c.(739-741)ATG>ATA	p.M247I	PRMT7_uc002evx.1_Missense_Mutation_p.M247I|PRMT7_uc010vlg.1_Missense_Mutation_p.M197I|PRMT7_uc002evz.1_Missense_Mutation_p.M93I	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	247					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		TGCTGCCCATGTTCAGGTACC	0.522													24	15					0	0	0.005443	0	0
SMPD3	55512	broad.mit.edu	37	16	68405116	68405116	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:68405116G>A	uc002ewa.2	-	3	1391	c.969C>T	c.(967-969)CTC>CTT	p.L323L	SMPD3_uc010cfe.2_Silent_p.L323L|SMPD3_uc010vlh.1_Silent_p.L323L	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	323	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	CCTTGTACAGGAGCTTGCTGT	0.697													6	38					0	0	0.001168	0	0
TMCO7	79613	broad.mit.edu	37	16	68894226	68894226	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:68894226C>T	uc002ewi.3	+	2	546	c.534C>T	c.(532-534)GTC>GTT	p.V178V	TMCO7_uc002ewh.2_Silent_p.V178V	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	178						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		TTGGTGCCGTCGTTCAAGACG	0.498													47	133					0	0	0.014410	0	0
IL34	146433	broad.mit.edu	37	16	70688538	70688538	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:70688538G>A	uc002ezh.1	+	2	509	c.126G>A	c.(124-126)CGG>CGA	p.R42R	IL34_uc002ezi.1_Silent_p.R42R	NM_152456	NP_689669	Q6ZMJ4	IL34_HUMAN	interleukin 34 precursor	42					positive regulation of cell proliferation|positive regulation of protein phosphorylation	extracellular space	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding			central_nervous_system(1)|skin(1)	2						GTTTTCTGCGGGACAAGCTGC	0.592											OREG0023916	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	72					0	0	0.013537	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698331	70698331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:70698331G>A	uc002ezj.2	-	15	1753	c.1493C>T	c.(1492-1494)TCC>TTC	p.S498F		NM_138383	NP_612392	Q765P7	MTSSL_HUMAN	metastasis suppressor 1-like	498					filopodium assembly|signal transduction		actin binding|cytoskeletal adaptor activity|SH3 domain binding			central_nervous_system(1)	1						CCCATTCACGGAGTAGCAGTC	0.672													3	11					0	0	0.004672	0	0
HYDIN	54768	broad.mit.edu	37	16	70871691	70871691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:70871691G>A	uc002ezr.2	-	77	13269	c.13141C>T	c.(13141-13143)CCT>TCT	p.P4381S	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4382										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTTTCTCGAGGATAAAAAGTT	0.418													9	45					0	0	0.010729	0	0
HYDIN	54768	broad.mit.edu	37	16	70908741	70908741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:70908741C>T	uc002ezr.2	-	63	10764	c.10636G>A	c.(10636-10638)GAA>AAA	p.E3546K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3547										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGTTTATTTTCCTCTGTGATG	0.522													8	11					0	0	0.006214	0	0
HYDIN	54768	broad.mit.edu	37	16	70916787	70916787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:70916787C>T	uc002ezr.2	-	60	10116	c.9988G>A	c.(9988-9990)GAA>AAA	p.E3330K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3331										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCATTGTTTTCGGTCACGAAG	0.512													32	30					0	0	0.011902	0	0
HYDIN	54768	broad.mit.edu	37	16	70989284	70989284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:70989284C>T	uc002ezr.2	-	40	6435	c.6307G>A	c.(6307-6309)GAG>AAG	p.E2103K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2104										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTACCAGCCTCCTCTCCTTCC	0.577													8	51					0	0	0.008291	0	0
HYDIN	54768	broad.mit.edu	37	16	71127753	71127753	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:71127753C>T	uc002ezr.2	-	11	1541	c.1413G>A	c.(1411-1413)GGG>GGA	p.G471G	HYDIN_uc010cfz.1_Silent_p.G216G|HYDIN_uc002ezv.2_Silent_p.G471G|HYDIN_uc010vmc.1_Silent_p.G488G|HYDIN_uc010vmd.1_Silent_p.G498G|HYDIN_uc002ezw.3_Silent_p.G488G	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	471										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGAAAACTTTCCCAATATCCA	0.413													20	26					0	0	0.002780	0	0
MARVELD3	91862	broad.mit.edu	37	16	71668133	71668133	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:71668133G>A	uc002fat.2	+	3	696	c.633G>A	c.(631-633)CTG>CTA	p.L211L	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	211	MARVEL.|Cytoplasmic (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				TGAACTTGCTGATCCTGGCCT	0.527													25	68					0	0	0.003330	0	0
HPR	3250	broad.mit.edu	37	16	72110435	72110435	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:72110435G>T	uc002fby.2	+	5	532	c.502G>T	c.(502-504)GGG>TGG	p.G168W	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	168	Peptidase S1.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				ACTCTATGTGGGGAAAAAGCA	0.433													17	59					2.35188e-11	2.59551e-11	0.006122	1	0
DHX38	9785	broad.mit.edu	37	16	72132922	72132922	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:72132922C>T	uc002fcb.2	+	6	1216	c.861C>T	c.(859-861)ACC>ACT	p.T287T	DHX38_uc010vmp.1_Intron|DHX38_uc010cgn.1_RNA	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	287					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				TGGGGTCCACCCCGCGTCTGT	0.622													7	29					0	0	0.003080	0	0
CLEC18B	497190	broad.mit.edu	37	16	74447545	74447545	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:74447545G>A	uc002fct.2	-	4	686	c.486C>T	c.(484-486)GGC>GGT	p.G162G	CLEC18B_uc002fcu.2_Silent_p.G162G|CLEC18B_uc010vmu.1_Silent_p.G82G|CLEC18B_uc010vmw.1_Silent_p.G162G|CLEC18B_uc010vmv.1_5'Flank	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	162	SCP.					extracellular region	sugar binding				0						GCCGCCCACAGCCCAGCTGGC	0.607													16	98					0	0	0.007413	0	0
CHST6	4166	broad.mit.edu	37	16	75513311	75513311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:75513311G>A	uc002fef.2	-	3	596	c.416C>T	c.(415-417)CCC>CTC	p.P139L	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.P139L	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	139	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GGCGCCTCGGGGAAAGGCACT	0.682													6	34					0	0	0.001984	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77398203	77398203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:77398203G>A	uc002ffc.3	-	5	1273	c.854C>T	c.(853-855)TCA>TTA	p.S285L	ADAMTS18_uc010chc.1_5'Flank|ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	285					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTTTCCAGCTGATCTTCTGGG	0.483													20	41					0	0	0.012319	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77465421	77465421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:77465421G>A	uc002ffc.3	-	3	685	c.266C>T	c.(265-267)TCG>TTG	p.S89L	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	89					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ATTCTGCGCCGATCGCTTTTT	0.478													56	180					0	0	0.014410	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80583386	80583386	+	Missense_Mutation	SNP	C	G	G	rs143006037		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:80583386C>G	uc002ffo.2	+	5	205	c.85C>G	c.(85-87)CCC>GCC	p.P29A	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	29					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						AATAGGTATTCCCATCCGAAC	0.343													8	9					0	0	0.006214	0	0
CDYL2	124359	broad.mit.edu	37	16	80638340	80638340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:80638340G>A	uc002ffs.2	-	7	1571	c.1466C>T	c.(1465-1467)TCC>TTC	p.S489F		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	489						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						AAGGCCTTTGGAGGAGCTCCA	0.547													47	58					0	0	0.013114	0	0
PKD1L2	114780	broad.mit.edu	37	16	81134869	81134869	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:81134869G>A	uc002fgh.1	-	45	7239	c.7239C>T	c.(7237-7239)ATC>ATT	p.I2413I	PKD1L2_uc002fgf.1_Silent_p.I213I|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2413	Extracellular (Potential).|Interaction with GNAS and GNAI1.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCAAATCTACGATCTCCCCTT	0.493													7	29					0	0	0.001984	0	0
PKD1L2	114780	broad.mit.edu	37	16	81142880	81142880	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:81142880C>T	uc002fgh.1	-	43	7005	c.7005G>A	c.(7003-7005)TGG>TGA	p.W2335*	PKD1L2_uc002fgf.1_Nonsense_Mutation_p.W135*|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2335	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AACGGAGTTTCCAACCAAATA	0.502													4	10					0	0	0.009096	0	0
PKD1L2	114780	broad.mit.edu	37	16	81145869	81145869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:81145869G>A	uc002fgh.1	-	42	6883	c.6883C>T	c.(6883-6885)CCC>TCC	p.P2295S	PKD1L2_uc002fgf.1_Missense_Mutation_p.P95S|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2295	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTCATTTTGGGATTCAACCTG	0.537													28	97					0	0	0.007291	0	0
PLCG2	5336	broad.mit.edu	37	16	81960745	81960745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:81960745G>A	uc002fgt.2	+	23	2628	c.2476G>A	c.(2476-2478)GAC>AAC	p.D826N		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	826	SH3.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CTACGTCGAGGACATCTCAAC	0.532													33	93					0	0	0.003271	0	0
PLCG2	5336	broad.mit.edu	37	16	81971475	81971475	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:81971475C>T	uc002fgt.2	+	28	3317	c.3165C>T	c.(3163-3165)TCC>TCT	p.S1055S		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	1055					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CACCCGAGTCCCAGAGGAAGA	0.592													20	25					0	0	0.008871	0	0
SLC38A8	146167	broad.mit.edu	37	16	84067033	84067033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:84067033G>A	uc002fhg.1	-	3	430	c.430C>T	c.(430-432)CCG>TCG	p.P144S		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	144					amino acid transport|sodium ion transport	integral to membrane					0						GCGTACCACGGCTGCGGGGCG	0.652													11	47					0	0	0.010729	0	0
LRRC50	123872	broad.mit.edu	37	16	84193376	84193376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:84193376G>A	uc002fhl.3	+	6	1019	c.838G>A	c.(838-840)GAT>AAT	p.D280N	LRRC50_uc010chi.1_RNA|LRRC50_uc010vnw.1_Missense_Mutation_p.D28N	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	280	LRRCT.				axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						ATACCTGGATGATAGACCAGT	0.368									Kartagener_syndrome				9	36					0	0	0.010729	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456253	84456253	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:84456253G>T	uc002fhx.2	+	9	882	c.793G>T	c.(793-795)GGG>TGG	p.G265W	ATP2C2_uc010chj.2_Missense_Mutation_p.G265W|ATP2C2_uc002fhy.2_Missense_Mutation_p.G282W|ATP2C2_uc002fhz.2_Missense_Mutation_p.G114W	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	265	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GATTGGAACAGGGGAAAGCTC	0.547													33	175					3.93418e-24	4.36465e-24	0.004289	1	0
USP10	9100	broad.mit.edu	37	16	84778852	84778852	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:84778852C>T	uc002fii.2	+	4	907	c.765C>T	c.(763-765)TTC>TTT	p.F255F	USP10_uc010voe.1_Silent_p.F259F|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	255					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						AGTCCTGCTTCCCTGCAGAGG	0.597													10	10					0	0	0.008291	0	0
USP10	9100	broad.mit.edu	37	16	84797807	84797807	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:84797807C>T	uc002fii.2	+	10	1912	c.1770C>T	c.(1768-1770)TCC>TCT	p.S590S	USP10_uc010voe.1_Silent_p.S594S|USP10_uc010vof.1_Silent_p.S152S|USP10_uc002fij.2_Silent_p.S116S	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	590					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						ACAAGACTTCCGTCACCCGCC	0.488													27	82					0	0	0.003954	0	0
KIAA0513	9764	broad.mit.edu	37	16	85100744	85100744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:85100744C>T	uc002fiu.2	+	2	287	c.67C>T	c.(67-69)CCC>TCC	p.P23S	KIAA0513_uc002fis.3_Missense_Mutation_p.P23S|KIAA0513_uc010voj.1_Missense_Mutation_p.P23S|KIAA0513_uc002fit.2_Missense_Mutation_p.P23S	NM_014732	NP_055547	O60268	K0513_HUMAN	hypothetical protein LOC9764	23						cytoplasm				breast(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.234)		CACCTCTTCTCCCCTGGAGGC	0.647													20	39					0	0	0.012319	0	0
CTU2	348180	broad.mit.edu	37	16	88781504	88781504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:88781504C>T	uc002flm.2	+	14	1516	c.1468C>T	c.(1468-1470)CGC>TGC	p.R490C	CTU2_uc002fln.2_Intron|CTU2_uc010chz.2_Missense_Mutation_p.R561C|CTU2_uc010cia.2_Missense_Mutation_p.R403C	NM_001012759	NP_001012777	Q2VPK5	CTU2_HUMAN	cytoplasmic tRNA 2-thiolation protein 2 isoform	490					tRNA thio-modification|tRNA wobble uridine modification	cytoplasm|protein complex|soluble fraction	protein binding			skin(1)	1						GGCCCAGCTCCGCACACAGAG	0.682													9	23					0	0	0.004482	0	0
CDT1	81620	broad.mit.edu	37	16	88872152	88872152	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:88872152T>C	uc002flu.2	+	5	761	c.707T>C	c.(706-708)GTT>GCT	p.V236A		NM_030928	NP_112190	Q9H211	CDT1_HUMAN	chromatin licensing and DNA replication factor	236					DNA replication|DNA replication checkpoint|M/G1 transition of mitotic cell cycle|regulation of DNA-dependent DNA replication initiation|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0476)		GAGTGCAATGTTGGCCAGATC	0.652													13	39					0	0	0.001855	0	0
ZNF778	197320	broad.mit.edu	37	16	89293871	89293871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:89293871C>T	uc002fmv.2	+	6	1430	c.1091C>T	c.(1090-1092)CCC>CTC	p.P364L	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Missense_Mutation_p.P322L|ZNF778_uc010vpg.1_Missense_Mutation_p.P127L	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	364					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		AGGGAGAAGCCCTTTGCATGT	0.433													50	57					0	0	0.014410	0	0
DPEP1	1800	broad.mit.edu	37	16	89703943	89703943	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:89703943A>G	uc010cin.2	+	8	1039	c.836A>G	c.(835-837)AAC>AGC	p.N279S	DPEP1_uc002fnr.3_Missense_Mutation_p.N279S|DPEP1_uc002fns.3_Missense_Mutation_p.N279S	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	279					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	AACAAGGCCAACCTGTCCCAA	0.577													51	52					0	0	0.014410	0	0
TUBB3	10381	broad.mit.edu	37	16	90001540	90001540	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:90001540C>T	uc002fph.1	+	4	746	c.681C>T	c.(679-681)CAC>CAT	p.H227H	TUBB3_uc002fpf.2_Silent_p.H574H|TUBB3_uc010ciz.1_Silent_p.H155H|TUBB3_uc002fpg.1_Silent_p.H81H|TUBB3_uc002fpi.1_Silent_p.H155H|TUBB3_uc002fpj.1_Silent_p.H155H|TUBB3_uc010cjb.1_Silent_p.H81H|TUBB3_uc002fpk.1_Silent_p.H81H	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	227					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		ACCTCAACCACCTGGTATCGG	0.627													9	43					0	0	0.004482	0	0
DBNDD1	79007	broad.mit.edu	37	16	90072785	90072785	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr16:90072785G>A	uc002fqf.1	-	4	623	c.435C>T	c.(433-435)GTC>GTT	p.V145V	DBNDD1_uc002fqe.1_Silent_p.V165V|DBNDD1_uc002fqg.1_RNA	NM_001042610	NP_001036075	Q9H9R9	DBND1_HUMAN	dysbindin (dystrobrevin binding protein 1)	145						cytoplasm					0		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0275)		ACGTGTCCAGGACTGTGGCCT	0.662													12	16					0	0	0.010729	0	0
C17orf97	400566	broad.mit.edu	37	17	263446	263446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:263446C>T	uc002frh.2	+	3	858	c.842C>T	c.(841-843)GCC>GTC	p.A281V	C17orf97_uc010vpz.1_RNA	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	301	20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.|11.									ovary(1)	1						GACCCTGAGGCCCTCAAGGGT	0.687													14	6					0	0	0.001855	0	0
PRPF8	10594	broad.mit.edu	37	17	1582092	1582092	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:1582092G>A	uc002fte.2	-	12	1797	c.1683C>T	c.(1681-1683)CAC>CAT	p.H561H		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	561						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GATACTGCACGTGACTATCCA	0.522													20	12					0	0	0.003954	0	0
OVCA2	124641	broad.mit.edu	37	17	1945386	1945386	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:1945386C>T	uc002ftx.2	+	1	110	c.45C>T	c.(43-45)TTC>TTT	p.F15F	DPH1_uc002ftr.1_Intron|DPH1_uc002fts.2_Intron|DPH1_uc002ftt.2_Intron|DPH1_uc010cjx.2_Intron|DPH1_uc010vqs.1_Intron|DPH1_uc002ftu.2_Intron|DPH1_uc002ftv.2_Intron|DPH1_uc002ftw.2_3'UTR	NM_080822	NP_543012	Q8WZ82	OVCA2_HUMAN	candidate tumor suppressor in ovarian cancer 2	15					response to retinoic acid	cytoplasm	hydrolase activity				0						TGGCGGGCTTCCGGCAGAGCG	0.731											OREG0024078	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	4					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	17	3144402	3144402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:3144402C>T	uc002fvf.2	+	1	486	c.433C>T	c.(433-435)CTC>TTC	p.L145F						SubName: Full=Olfactory receptor OR17-1;																		TGTCTTGCTCCTCTCCTTGTG	0.577													6	7					0	0	0.003080	0	0
OR3A3	8392	broad.mit.edu	37	17	3324814	3324814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:3324814G>A	uc010vrd.1	+	1	953	c.953G>A	c.(952-954)CGA>CAA	p.R318Q		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGGGGAAGCGATCACTGACC	0.453													39	28					0	0	0.008740	0	0
TRPV1	7442	broad.mit.edu	37	17	3495376	3495376	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:3495376C>G	uc010vrr.1	-	1	796	c.269G>C	c.(268-270)GGC>GCC	p.G90A	TRPV1_uc010vro.1_Missense_Mutation_p.G90A|TRPV1_uc010vrp.1_Missense_Mutation_p.G90A|TRPV1_uc010vrq.1_Missense_Mutation_p.A65P|TRPV1_uc010vrs.1_Missense_Mutation_p.G90A|TRPV1_uc010vrt.1_Missense_Mutation_p.G90A|TRPV1_uc010vru.1_Missense_Mutation_p.G90A	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	90	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	ACCGGTGGGGCCGTCTCCTGG	0.647													14	14					0	0	0.002450	0	0
ALOX15	246	broad.mit.edu	37	17	4540538	4540538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:4540538C>T	uc002fyh.2	-	7	837	c.823G>A	c.(823-825)GAA>AAA	p.E275K	ALOX15_uc010vsd.1_Missense_Mutation_p.E236K|ALOX15_uc010vse.1_Missense_Mutation_p.E297K	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	275	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	AAGTCAGCTTCGAACAGTGTG	0.532													18	13					0	0	0.010504	0	0
ZNF594	84622	broad.mit.edu	37	17	5087191	5087191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:5087191G>A	uc010cla.1	-	2	517	c.361C>T	c.(361-363)CAT>TAT	p.H121Y		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TTTATATTATGAATTTTCTGA	0.348													12	10					0	0	0.001855	0	0
NLRP1	22861	broad.mit.edu	37	17	5425029	5425029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:5425029C>T	uc002gci.2	-	13	4153	c.3598G>A	c.(3598-3600)GTG>ATG	p.V1200M	NLRP1_uc002gcg.1_Missense_Mutation_p.V1204M|NLRP1_uc002gck.2_Missense_Mutation_p.V1200M|NLRP1_uc002gcj.2_Missense_Mutation_p.V1170M|NLRP1_uc002gcl.2_Missense_Mutation_p.V1170M|NLRP1_uc002gch.3_Missense_Mutation_p.V1200M	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1200					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TGCAGCTCCACCCTGGCTGGC	0.532													31	28					0	0	0.010818	0	0
SPEM1	374768	broad.mit.edu	37	17	7323961	7323961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7323961C>T	uc002ggv.2	+	2	185	c.160C>T	c.(160-162)CGT>TGT	p.R54C	FGF11_uc010vtw.1_5'UTR	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	54					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				GAGCCGATTCCGTGGTGTCTT	0.582													33	28					0	0	0.012213	0	0
TP53	7157	broad.mit.edu	37	17	7578400	7578400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7578400G>A	uc002gim.2	-	5	724	c.530C>T	c.(529-531)CCC>CTC	p.P177L	TP53_uc002gig.1_Missense_Mutation_p.P177L|TP53_uc002gih.2_Missense_Mutation_p.P177L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P45L|TP53_uc010cng.1_Missense_Mutation_p.P45L|TP53_uc002gii.1_Missense_Mutation_p.P45L|TP53_uc010cnh.1_Missense_Mutation_p.P177L|TP53_uc010cni.1_Missense_Mutation_p.P177L|TP53_uc002gij.2_Missense_Mutation_p.P177L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.P84L|TP53_uc002gio.2_Missense_Mutation_p.P45L|TP53_uc010vug.1_Missense_Mutation_p.P138L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	177	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		CP -> FS (in a sporadic cancer; somatic mutation).|P -> H (in sporadic cancers; somatic mutation).|P -> T (in a sporadic cancer; somatic mutation).|P -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|P -> L (in sporadic cancers; somatic mutation).|P -> I (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|P -> S (in sporadic cancers; somatic mutation).|P -> R (in sporadic cancers; somatic mutation).|P -> A (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.P177L(17)|p.P177R(15)|p.P177P(10)|p.P177_C182delPHHERC(8)|p.P177S(8)|p.0?(7)|p.C176_R181delCPHHER(3)|p.R174fs*24(3)|p.P177H(3)|p.R175_E180delRCPHHE(3)|p.P177fs*3(2)|p.V173fs*59(2)|p.R174fs*1(2)|p.K164_P219del(1)|p.C176fs*65(1)|p.C176_P177delCP(1)|p.V173fs*69(1)|p.C176fs*68(1)|p.P177_H179delPHH(1)|p.V173fs*23(1)|p.R174_H178>S(1)|p.V172_E180delVVRRCPHHE(1)|p.R174_H179delRRCPHH(1)|p.E171fs*1(1)|p.P177fs*69(1)|p.R175_H178>X(1)|p.P177fs*4(1)|p.H168fs*69(1)|p.E171_H179delEVVRRCPHH(1)|p.R81fs*24(1)|p.R174_E180>K(1)|p.P177I(1)|p.P177_E180delPHHE(1)|p.R42fs*24(1)|p.R174fs*3(1)|p.P177T(1)|p.E171fs*61(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTCATGGTGGGGGCAGCGCCT	0.647		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			24	19					0	0	0.004656	0	0
EFNB3	1949	broad.mit.edu	37	17	7611369	7611369	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7611369C>T	uc002gis.2	+	2	613	c.216C>T	c.(214-216)TCC>TCT	p.S72S		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	72	Extracellular (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				GCCCTCACTCCTCTCCTAATT	0.622													21	40					0	0	0.008871	0	0
DNAH2	146754	broad.mit.edu	37	17	7710628	7710628	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7710628G>A	uc002giu.1	+	61	9617	c.9603G>A	c.(9601-9603)CGG>CGA	p.R3201R	DNAH2_uc010cnm.1_Silent_p.R139R	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3201	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGTGGGTGCGGGCCATGGAGG	0.657													43	33					0	0	0.013114	0	0
KDM6B	23135	broad.mit.edu	37	17	7750890	7750890	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7750890C>T	uc002giw.1	+	11	1660	c.1284C>T	c.(1282-1284)CCC>CCT	p.P428P	KDM6B_uc002gix.2_5'UTR	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	428	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						ACCAAACTCCCGCGCTGGAGG	0.547													7	13					0	0	0.004482	0	0
KDM6B	23135	broad.mit.edu	37	17	7750924	7750924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7750924C>T	uc002giw.1	+	11	1694	c.1318C>T	c.(1318-1320)CCC>TCC	p.P440S	KDM6B_uc002gix.2_5'UTR	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	440	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						CCGCCTGGGGCCCTCGGCACA	0.438													7	13					0	0	0.003080	0	0
GUCY2D	3000	broad.mit.edu	37	17	7915885	7915885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:7915885G>A	uc002gjt.2	+	10	2148	c.2074G>A	c.(2074-2076)GAA>AAA	p.E692K		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	692	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GAGACTGCTGGAAGCACAGAA	0.592													39	26					0	0	0.010771	0	0
MYH13	8735	broad.mit.edu	37	17	10224979	10224979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10224979G>A	uc002gmk.1	-	24	3071	c.2981C>T	c.(2980-2982)TCC>TTC	p.S994F	MYH13_uc010vve.1_Missense_Mutation_p.S92F	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	994	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GGTCAATTTGGAAATGTTTTC	0.373													23	13					0	0	0.014323	0	0
MYH13	8735	broad.mit.edu	37	17	10227386	10227386	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10227386G>A	uc002gmk.1	-	23	2977	c.2887C>T	c.(2887-2889)CTG>TTG	p.L963L	MYH13_uc010vve.1_Silent_p.L61L	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	963	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GTCAAGGTCAGCTCCAGGTCA	0.463													27	12					0	0	0.003954	0	0
MYH13	8735	broad.mit.edu	37	17	10258257	10258257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10258257G>A	uc002gmk.1	-	10	946	c.856C>T	c.(856-858)CAT>TAT	p.H286Y		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	286	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TAGAAAATATGATAGCTTCTC	0.358													14	12					0	0	0.004990	0	0
MYH4	4622	broad.mit.edu	37	17	10348361	10348361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10348361G>A	uc002gmn.2	-	37	5509	c.5398C>T	c.(5398-5400)CGT>TGT	p.R1800C	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1800	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCATCCAGACGGAGCTGCAGA	0.562													52	39					0	0	0.014410	0	0
MYH4	4622	broad.mit.edu	37	17	10356592	10356592	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10356592C>T	uc002gmn.2	-	24	3099	c.2988G>A	c.(2986-2988)CTG>CTA	p.L996L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	996	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCTCCTTGGTCAGCTTAGCAA	0.478													74	61					0	0	0.014410	0	0
MYH1	4619	broad.mit.edu	37	17	10399338	10399338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10399338C>T	uc002gmo.2	-	35	5192	c.5098G>A	c.(5098-5100)GAG>AAG	p.E1700K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1700	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTGCTCCTCTCTGTCTGTTCC	0.557													23	20					0	0	0.003330	0	0
MYH1	4619	broad.mit.edu	37	17	10408589	10408589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10408589G>A	uc002gmo.2	-	21	2420	c.2326C>T	c.(2326-2328)CTC>TTC	p.L776F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	776	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTCTAGGAGCCCCAGAAGA	0.473													31	26					0	0	0.012213	0	0
MYH2	4620	broad.mit.edu	37	17	10428661	10428661	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10428661C>T	uc010coi.2	-	33	4670	c.4542G>A	c.(4540-4542)GAG>GAA	p.E1514E	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.E1514E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1514	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GGTCAGAAATCTCCTCTGTTG	0.383													20	8					0	0	0.012319	0	0
MYH2	4620	broad.mit.edu	37	17	10432099	10432099	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10432099G>A	uc010coi.2	-	27	3780	c.3652C>T	c.(3652-3654)CGA>TGA	p.R1218*	uc002gml.1_Intron|MYH2_uc002gmp.3_Nonsense_Mutation_p.R1218*|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1218	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGCTTCACTCGCTGCAGGTTG	0.527													43	27					0	0	0.014410	0	0
C17orf48	56985	broad.mit.edu	37	17	10608567	10608568	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:10608567_10608568GG>AA	uc002gmt.2	+	2	399_400	c.324_325GG>AA	c.(322-327)TGGGGA>TGAAGA	p.108_109WG>*R	C17orf48_uc002gmu.2_RNA|C17orf48_uc002gmv.2_RNA|C17orf48_uc010vvg.1_Nonsense_Mutation_p.108_109WG>*R	NM_020233	NP_064618	Q3LIE5	ADPRM_HUMAN	ADP-ribose/CDP-alcohol pyrophosphatase	108_109							ADP-ribose diphosphatase activity|CDP-glycerol diphosphatase activity|metal ion binding				0						ATCATACATGGGGAAACCATGA	0.356													30	18					0	0	0.004672	0	0
DNAH9	1770	broad.mit.edu	37	17	11592929	11592929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:11592929G>A	uc002gne.2	+	20	3858	c.3790G>A	c.(3790-3792)GAG>AAG	p.E1264K	DNAH9_uc010coo.2_Missense_Mutation_p.E558K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1264	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAGGCACATCGAGATCCAGCA	0.493													48	39					0	0	0.014410	0	0
DNAH9	1770	broad.mit.edu	37	17	11593453	11593453	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:11593453G>A	uc002gne.2	+	20	4382	c.4314G>A	c.(4312-4314)AAG>AAA	p.K1438K	DNAH9_uc010coo.2_Silent_p.K732K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1438	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAACCTTAAAGGAGCTGCAGA	0.552													13	13					0	0	0.001855	0	0
MYOCD	93649	broad.mit.edu	37	17	12661460	12661460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:12661460C>T	uc002gnn.2	+	11	2416	c.2117C>T	c.(2116-2118)ACT>ATT	p.T706I	MYOCD_uc002gno.2_Missense_Mutation_p.T754I|MYOCD_uc002gnp.1_Missense_Mutation_p.T658I|MYOCD_uc002gnq.2_Intron	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	706					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCATCCCCAACTTTTTCTAAG	0.403													27	23					0	0	0.004656	0	0
MYOCD	93649	broad.mit.edu	37	17	12666536	12666537	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:12666536_12666537CC>TT	uc002gnn.2	+	13	2691_2692	c.2392_2393CC>TT	c.(2392-2394)CCC>TTC	p.P798F	MYOCD_uc002gno.2_Missense_Mutation_p.P846F|MYOCD_uc002gnq.2_Missense_Mutation_p.P522F	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	798					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCCCTTTGATCCCTATGCCACC	0.5													36	38					0	0	0.004672	0	0
MYOCD	93649	broad.mit.edu	37	17	12666806	12666806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:12666806G>A	uc002gnn.2	+	13	2961	c.2662G>A	c.(2662-2664)GAA>AAA	p.E888K	MYOCD_uc002gno.2_Missense_Mutation_p.E936K|MYOCD_uc002gnq.2_Missense_Mutation_p.E612K	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	888					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ATCTCCCTGGGAAACCATGGA	0.547													17	13					0	0	0.004990	0	0
CENPV	201161	broad.mit.edu	37	17	16256435	16256435	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:16256435G>A	uc002gpw.2	-	1	378	c.316C>T	c.(316-318)CTG>TTG	p.L106L		NM_181716	NP_859067	Q7Z7K6	CENPV_HUMAN	proline rich 6	109					cell division|centromeric heterochromatin formation|mitosis|positive regulation of cytokinesis|regulation of chromosome organization	condensed chromosome kinetochore|cytoplasm|nucleus|spindle midzone	carbon-sulfur lyase activity				0						CCCAGGTCCAGGTTGGACGCC	0.507													3	17					0	0	0.009096	0	0
MYO15A	51168	broad.mit.edu	37	17	18059562	18059562	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:18059562A>G	uc010vxh.1	+	47	8851	c.8513A>G	c.(8512-8514)AAC>AGC	p.N2838S	MYO15A_uc010vxi.1_Missense_Mutation_p.N102S|MYO15A_uc010vxj.1_Missense_Mutation_p.N37S|MYO15A_uc010vxk.1_Intron|MYO15A_uc010vxl.1_5'Flank|MYO15A_uc002gsl.2_5'Flank	NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2838	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTGGAGTTCAACCTGGCCAGT	0.552													27	15					0	0	0.009535	0	0
PRPSAP2	5636	broad.mit.edu	37	17	18769194	18769194	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:18769194C>T	uc002gup.1	+	3	259	c.48C>T	c.(46-48)ACC>ACT	p.T16T	PRPSAP2_uc002guo.1_5'UTR|PRPSAP2_uc010vyi.1_Silent_p.T4T|PRPSAP2_uc010vyj.1_5'UTR|PRPSAP2_uc010vyk.1_Silent_p.T4T	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	16					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						TGAACATAACCAAAGGTGGTC	0.348													14	5					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	17	20805983	20805983	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:20805983C>T	uc002gyg.1	+	4		c.1167C>T			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		TAGAACATCCCGAACCCGTGA	0.617													6	3					0	0	0.001168	0	0
SUPT6H	6830	broad.mit.edu	37	17	27010091	27010091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:27010091C>T	uc002hby.2	+	15	1949	c.1859C>T	c.(1858-1860)CCC>CTC	p.P620L	SUPT6H_uc010crt.2_Missense_Mutation_p.P620L	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	620					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					AATATAACCCCCACCAAGAAA	0.532													3	7					0	0	0.004672	0	0
RNF135	84282	broad.mit.edu	37	17	29325795	29325795	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:29325795G>A	uc002hfz.2	+	5	1021	c.885G>A	c.(883-885)GAG>GAA	p.E295E	RNF135_uc002hga.2_3'UTR|RNF135_uc010csm.2_3'UTR|RNF135_uc002hgb.2_3'UTR	NM_032322	NP_115698	Q8IUD6	RN135_HUMAN	ring finger protein 135 isoform 1	295	B30.2/SPRY.				innate immune response|negative regulation of type I interferon production|positive regulation of interferon-beta production|regulation of innate immune response	cytosol	protein binding|ribonucleoprotein binding|ubiquitin-protein ligase activity|zinc ion binding	p.?(1)		skin(2)	2		all_cancers(10;8.65e-08)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Myeloproliferative disorder(56;0.0255)				GGAGCTGTGAGAGGTTTTCTA	0.542													29	18					0	0	0.009535	0	0
NF1	4763	broad.mit.edu	37	17	29665053	29665053	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:29665053C>T	uc002hgg.2	+	45	7048	c.6715C>T	c.(6715-6717)CAA>TAA	p.Q2239*	NF1_uc002hgh.2_Nonsense_Mutation_p.Q2218*|NF1_uc010cso.2_Nonsense_Mutation_p.Q427*|NF1_uc010wbt.1_Intron|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2239					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATTTGCATTCCAATATAATCC	0.323			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			39	42					0	0	0.006230	0	0
ACCN1	40	broad.mit.edu	37	17	31350947	31350947	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:31350947C>T	uc002hhu.2	-	6	1402	c.1128G>A	c.(1126-1128)GTG>GTA	p.V376V	ACCN1_uc002hht.2_Silent_p.V427V	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	376	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	TGGGGATCTTCACCATGGAGA	0.478													31	22					0	0	0.003755	0	0
NLE1	54475	broad.mit.edu	37	17	33464139	33464139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:33464139G>A	uc002hiy.1	-	7	737	c.709C>T	c.(709-711)CGC>TGC	p.R237C	NLE1_uc010ctn.1_5'UTR|NLE1_uc002hiz.1_5'UTR	NM_018096	NP_060566	Q9NVX2	NLE1_HUMAN	Notchless gene homolog isoform a	237	WD 3.					nucleolus				breast(3)|ovary(1)	4		Ovarian(249;0.17)				CGCTCACAGCGGCCTGCAGTT	0.627													31	33					0	0	0.009535	0	0
GAS2L2	246176	broad.mit.edu	37	17	34071945	34071945	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:34071945T>C	uc002hjv.1	-	6	2599	c.2571A>G	c.(2569-2571)CAA>CAG	p.Q857Q		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	857					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTCTGGAGGTTGGGGGCTGC	0.512													13	11					0	0	0.001855	0	0
GPR179	440435	broad.mit.edu	37	17	36499507	36499507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:36499507C>T	uc002hpz.2	-	1	187	c.166G>A	c.(166-168)GCC>ACC	p.A56T		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	56	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GCGGCCTCGGCCCCCTCTAGG	0.637													15	51					0	0	0.003163	0	0
PCGF2	7703	broad.mit.edu	37	17	36896591	36896592	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:36896591_36896592CC>TT	uc002hqp.1	-	3	307_308	c.64_65GG>AA	c.(64-66)GGG>AAG	p.G22K	PCGF2_uc002hqn.1_Missense_Mutation_p.G22K|PCGF2_uc002hqo.1_Missense_Mutation_p.G22K|PCGF2_uc010cvo.1_Intron|PCGF2_uc002hqq.1_Missense_Mutation_p.G22K	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110	22	RING-type.				negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					GAAGTACCCCCCGCAGAGGGCA	0.619													32	88					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	37187934	37187934	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:37187934C>T	uc002hrd.1	+	1		c.1776C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		CCTTTTCCAACCATGCAGAAG	0.488													8	26					0	0	0.003080	0	0
STAC2	342667	broad.mit.edu	37	17	37369809	37369809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:37369809G>A	uc002hrs.2	-	9	1163	c.944C>T	c.(943-945)CCT>CTT	p.P315L	STAC2_uc010cvt.2_Missense_Mutation_p.P173L	NM_198993	NP_945344	Q6ZMT1	STAC2_HUMAN	SH3 and cysteine rich domain 2	315	SH3.				intracellular signal transduction		metal ion binding			pancreas(1)	1						CCGATCTCCAGGCCTGGGGAG	0.622													22	51					0	0	0.003954	0	0
CDK12	51755	broad.mit.edu	37	17	37681031	37681031	+	Missense_Mutation	SNP	G	A	A	rs143648695		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:37681031G>A	uc010cvv.2	+	12	3786	c.3200G>A	c.(3199-3201)CGA>CAA	p.R1067Q	CDK12_uc010wef.1_Missense_Mutation_p.R1066Q|CDK12_uc002hrw.3_Missense_Mutation_p.R1067Q	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1067					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						AAAACTTCTCGAAAAGAAACT	0.552										TCGA Ovarian(9;0.13)			52	82					0	0	0.014410	0	0
NEUROD2	4761	broad.mit.edu	37	17	37762201	37762201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:37762201C>T	uc002hry.2	-	2	852	c.652G>A	c.(652-654)GAG>AAG	p.E218K		NM_006160	NP_006151	Q15784	NDF2_HUMAN	neurogenic differentiation 2	218					cellular response to calcium ion|cellular response to electrical stimulus|cerebellar cortex development|negative regulation of synapse maturation|positive regulation of calcium-mediated signaling|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of synapse maturation|positive regulation of synaptic plasticity|protein ubiquitination|regulation of transcription from RNA polymerase II promoter	nucleus	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Lung(15;0.00549)|LUAD - Lung adenocarcinoma(14;0.0664)			GCGCCTTGCTCCGTGAGGAAG	0.682													15	24					0	0	0.004990	0	0
STARD3	10948	broad.mit.edu	37	17	37814692	37814692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:37814692C>T	uc002hsd.2	+	6	588	c.464C>T	c.(463-465)CCC>CTC	p.P155L	STARD3_uc010weg.1_3'UTR|STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_Missense_Mutation_p.P137L|STARD3_uc010wei.1_Missense_Mutation_p.P151S|STARD3_uc002hsf.2_Missense_Mutation_p.P21L|STARD3_uc002hsg.2_Missense_Mutation_p.P21L	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	155	Helical; (Potential).|MENTAL.				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TACCTGCTCCCCATCGTCTCT	0.592													19	39					0	0	0.007413	0	0
GRB7	2886	broad.mit.edu	37	17	37898921	37898921	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:37898921C>T	uc002hsr.2	+	3	508	c.258C>T	c.(256-258)GGC>GGT	p.G86G	GRB7_uc002hss.2_Silent_p.G86G|GRB7_uc010cwc.2_Silent_p.G86G|GRB7_uc002hst.2_Silent_p.G86G	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	86					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TTCTCGGGGGCCCCTCCAGTG	0.652													46	67					0	0	0.014410	0	0
NR1D1	9572	broad.mit.edu	37	17	38253337	38253337	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:38253337C>T	uc002htz.1	-	2	977	c.351G>A	c.(349-351)AAG>AAA	p.K117K	NR1D1_uc010cwq.1_RNA|NR1D1_uc010cwr.1_5'Flank	NM_021724	NP_068370	P20393	NR1D1_HUMAN	nuclear receptor subfamily 1, group D, member 1	117					cellular response to lipopolysaccharide|negative regulation of receptor biosynthetic process|negative regulation of toll-like receptor 4 signaling pathway|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			skin(1)	1	Colorectal(19;0.000442)					TGCTGGTGCTCTTGCTGGGGG	0.483													28	70					0	0	0.010818	0	0
KRT222	125113	broad.mit.edu	37	17	38812820	38812820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:38812820C>T	uc002hvc.2	-	6	787	c.722G>A	c.(721-723)CGA>CAA	p.R241Q	KRT222_uc010wfk.1_RNA|KRT222_uc002hvb.2_Missense_Mutation_p.R201Q	NM_152349	NP_689562	Q8N1A0	KT222_HUMAN	truncated type I keratin KA21	241						intermediate filament	structural molecule activity			central_nervous_system(1)|skin(1)	2						TTTCCTCAATCGAGGGTTATC	0.338													27	48					0	0	0.007291	0	0
KRT24	192666	broad.mit.edu	37	17	38856635	38856635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:38856635C>T	uc002hvd.2	-	4	913	c.856G>A	c.(856-858)GAA>AAA	p.E286K		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	286	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				TTCTTCATTTCCTAGCATGAA	0.443													90	181					0	0	0.014410	0	0
KRTAP3-2	83897	broad.mit.edu	37	17	39156090	39156090	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:39156090A>C	uc002hvs.2	-	1	49	c.16T>G	c.(16-18)TCT>GCT	p.S6A		NM_031959	NP_114165	Q9BYR7	KRA32_HUMAN	keratin associated protein 3.2	6	1.|3 X 5 AA repeats of C-C-X(3).					keratin filament	structural molecule activity				0		Breast(137;0.00043)				CAGCTGCGAGAGGCACAGCAA	0.547													31	61					0	0	0.003271	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261747	39261747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:39261747G>A	uc010wfp.1	+	1	107	c.107G>A	c.(106-108)AGG>AAG	p.R36K		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	36	3.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						ACCTGCTGCAGGACCACCTGC	0.657													22	26					0	0	0.010504	0	0
KRT33B	3884	broad.mit.edu	37	17	39522799	39522799	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:39522799G>A	uc002hwl.2	-	3	556	c.511C>T	c.(511-513)CTG>TTG	p.L171L		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	171	Rod.|Coil 1B.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				GACCTGCACAGGGTCAGCTCA	0.602													38	52					0	0	0.006230	0	0
KRT35	3886	broad.mit.edu	37	17	39633394	39633394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:39633394G>A	uc002hws.2	-	7	1325	c.1282C>T	c.(1282-1284)CCT>TCT	p.P428S		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	428	Tail.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GAGGCCGCAGGAAGACAGGGA	0.572													26	67					0	0	0.003954	0	0
KRT17	3872	broad.mit.edu	37	17	39777023	39777023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:39777023G>A	uc002hxh.2	-	6	1190	c.1069C>T	c.(1069-1071)CGC>TGC	p.R357C	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	357	Coil 2.|Rod.			R -> L (in Ref. 4; AL353997/AC022596).	epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				ATCTCGCAGCGAAGCTGGGCC	0.627									Steatocystoma_Multiplex				26	41					0	0	0.004656	0	0
LOC100190938	100190938	broad.mit.edu	37	17	40905756	40905757	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:40905756_40905757GG>AA	uc002ibd.1	-	4		c.2330_2331CC>TT								Homo sapiens cDNA FLJ32559 fis, clone SPLEN1000144.												0						TCTTCTCTATGGTTCGTCCTTC	0.535													5	6					0	0	0.004672	0	0
WNK4	65266	broad.mit.edu	37	17	40936554	40936554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:40936554C>T	uc002ibj.2	+	4	1148	c.1127C>T	c.(1126-1128)TCC>TTC	p.S376F	WNK4_uc010wgx.1_Missense_Mutation_p.P70S|WNK4_uc002ibk.1_Missense_Mutation_p.S148F|WNK4_uc010wgy.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	376	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TACCCGTACTCCGAGTGCCAG	0.592													10	32					0	0	0.008291	0	0
LOC90586	90586	broad.mit.edu	37	17	41019657	41019658	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:41019657_41019658GG>AA	uc002ibw.1	+	1	496_497	c.362_363GG>AA	c.(361-363)CGG>CAA	p.R121Q	LOC90586_uc002ibx.2_5'Flank	NR_002773				Homo sapiens amine oxidase pseudogene mRNA, splice variant HLAO1.												0						CCACCTGCCCGGGAGGCACTGG	0.658													24	23					0	0	0.004672	0	0
G6PC	2538	broad.mit.edu	37	17	41055989	41055989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:41055989C>T	uc002icb.1	+	2	351	c.272C>T	c.(271-273)ACT>ATT	p.T91I	G6PC_uc010whf.1_Missense_Mutation_p.T93I	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	91	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GTTTTGGATACTGACTACTAC	0.493									Glycogen_Storage_Disease_type_Ia				36	82					0	0	0.008740	0	0
KIF18B	146909	broad.mit.edu	37	17	43009596	43009596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:43009596G>A	uc010wji.1	-	10	1354	c.1253C>T	c.(1252-1254)CCC>CTC	p.P418L	KIF18B_uc002iht.2_Missense_Mutation_p.P418L|KIF18B_uc010wjh.1_Intron	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				GGGTGGCAAGGGGGAGCTGGG	0.667													20	22					0	0	0.012319	0	0
KIF18B	146909	broad.mit.edu	37	17	43011361	43011361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:43011361G>A	uc010wji.1	-	7	1093	c.992C>T	c.(991-993)TCC>TTC	p.S331F	KIF18B_uc002iht.2_Missense_Mutation_p.S331F|KIF18B_uc010wjh.1_Missense_Mutation_p.S331F	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				GGTCAGGCTGGAGGGGCTGAT	0.632													6	21					0	0	0.001168	0	0
IMP5	162540	broad.mit.edu	37	17	43924026	43924026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:43924026C>T	uc010wka.1	+	1	1754	c.1754C>T	c.(1753-1755)ACC>ATC	p.T585I	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	585	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GAGATTGTCACCATATCTGAG	0.572													49	73					0	0	0.014410	0	0
MAPT	4137	broad.mit.edu	37	17	44061192	44061192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:44061192C>T	uc002ijr.3	+	6	1342	c.1022C>T	c.(1021-1023)TCT>TTT	p.S341F	MAPT_uc010dau.2_Missense_Mutation_p.S341F|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	341					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				CGGGGCCCCTCTTTGGGAGAG	0.652													34	61					0	0	0.003271	0	0
KIAA1267	284058	broad.mit.edu	37	17	44109022	44109022	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:44109022G>A	uc002ikb.2	-	14	3223	c.3138C>T	c.(3136-3138)CCC>CCT	p.P1046P	KIAA1267_uc002ikc.2_Silent_p.P1046P|KIAA1267_uc002ikd.2_Silent_p.P1046P|KIAA1267_uc010dav.2_Silent_p.P1045P|KIAA1267_uc010wkb.1_Silent_p.P377P|KIAA1267_uc010wkc.1_Silent_p.P314P	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	1046						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				ACTCCGCCTGGGGACTGTGCG	0.667													17	33					0	0	0.007413	0	0
LRRC37A2	474170	broad.mit.edu	37	17	44626399	44626399	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:44626399C>T	uc002ikn.1	+	9	3897	c.3894C>T	c.(3892-3894)ATC>ATT	p.I1298I	ARL17A_uc002iko.3_Intron|LRRC37A2_uc002ikq.1_Silent_p.I259I|LRRC37A2_uc010dax.1_Silent_p.I228I	NM_001006607	NP_001006608	A6NM11	L37A2_HUMAN	c114 SLIT-like testicular protein precursor	1298	Extracellular (Potential).					integral to membrane					0		Melanoma(429;0.211)		BRCA - Breast invasive adenocarcinoma(366;0.232)		CTAAACCAATCGTACATGCCA	0.418													37	179					0	0	0.014410	0	0
ITGB3	3690	broad.mit.edu	37	17	45361894	45361894	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:45361894C>T	uc002ilj.2	+	4	467	c.447C>T	c.(445-447)TCC>TCT	p.S149S	ITGB3_uc002ili.1_Silent_p.S149S|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	149	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	TGTCTTACTCCATGAAGGATG	0.517													24	81					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	17	45534160	45534160	+	Splice_Site	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:45534160C>G	uc002ilp.1	-	5		c.496_splice	c.e5-1		uc002ilq.2_Splice_Site					Homo sapiens cDNA clone IMAGE:5266250, containing frame-shift errors.																		TGGGCCCAACCTAAAAATAAA	0.338													7	15					0	0	0.001984	0	0
HOXB1	3211	broad.mit.edu	37	17	46607762	46607762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:46607762G>A	uc002ink.1	-	1	511	c.505C>T	c.(505-507)CCT>TCT	p.P169S		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	169						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTTCTGAAGGGCAGGGTGTT	0.587													13	43					0	0	0.001855	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47115560	47115560	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:47115560G>A	uc002iom.2	+	6	766	c.432G>A	c.(430-432)TTG>TTA	p.L144L	IGF2BP1_uc010dbj.2_Intron	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	144	RRM 2.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						GCCACCAGTTGGAGAACCATG	0.567													41	57					0	0	0.007835	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47233948	47233948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:47233948G>A	uc002ion.2	+	5	720	c.661G>A	c.(661-663)GAT>AAT	p.D221N	B4GALNT2_uc010wlt.1_Missense_Mutation_p.D135N|B4GALNT2_uc010wlu.1_Missense_Mutation_p.D161N	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	221	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			TGAAGGACCCGATGCCCCCGT	0.562													35	70					0	0	0.011902	0	0
NGFR	4804	broad.mit.edu	37	17	47587845	47587845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:47587845G>A	uc002ioz.3	+	4	765	c.640G>A	c.(640-642)GAG>AAG	p.E214K		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	214	Ser/Thr-rich.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					CAGCACCCAGGAGCCTGAGGC	0.642													25	53					0	0	0.003330	0	0
MYST2	11143	broad.mit.edu	37	17	47893179	47893179	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:47893179C>T	uc002ipm.2	+	8	993	c.867C>T	c.(865-867)ACC>ACT	p.T289T	MYST2_uc002ipl.1_Silent_p.T259T|MYST2_uc010wma.1_Silent_p.T150T|MYST2_uc010wmb.1_Silent_p.T179T|MYST2_uc010wmc.1_Silent_p.T120T|MYST2_uc010wmd.1_Silent_p.T133T|MYST2_uc010wme.1_Silent_p.T103T|MYST2_uc010wmf.1_5'UTR|MYST2_uc010wmg.1_5'UTR	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	289					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ACAGACAGACCTATGGGAACA	0.428													36	72					0	0	0.003755	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48226561	48226561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:48226561C>T	uc002iqh.3	-	3	1321	c.1318G>A	c.(1318-1320)GAG>AAG	p.E440K		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	438	Interacts with protein phosphatase 1 (By similarity).				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						GGGTCCTCCTCCTCCGACAGC	0.577													9	4					0	0	0.008291	0	0
COL1A1	1277	broad.mit.edu	37	17	48266534	48266534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:48266534G>A	uc002iqm.2	-	40	3058	c.2932C>T	c.(2932-2934)CCC>TCC	p.P978S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	978	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTTACAGAGGGGCCAGGAAGA	0.602			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						22	22					0	0	0.012319	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48597082	48597082	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:48597082A>G	uc010wmr.1	+	7	1141	c.979A>G	c.(979-981)ACT>GCT	p.T327A	MYCBPAP_uc002iqx.2_Missense_Mutation_p.T327A|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	290					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CAAGACAAAAACTCAGCGTGG	0.552													22	32					0	0	0.010504	0	0
CACNA1G	8913	broad.mit.edu	37	17	48696344	48696344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:48696344C>T	uc002irk.1	+	33	6128	c.5756C>T	c.(5755-5757)TCC>TTC	p.S1919F	CACNA1G_uc002irj.1_Missense_Mutation_p.S1885F|CACNA1G_uc002irl.1_Missense_Mutation_p.S1896F|CACNA1G_uc002irm.1_Missense_Mutation_p.S1885F|CACNA1G_uc002irn.1_Missense_Mutation_p.S1878F|CACNA1G_uc002iro.1_Missense_Mutation_p.S1885F|CACNA1G_uc002irp.1_Missense_Mutation_p.S1919F|CACNA1G_uc002irq.1_Missense_Mutation_p.S1896F|CACNA1G_uc002irr.1_Missense_Mutation_p.S1919F|CACNA1G_uc002irs.1_Missense_Mutation_p.S1908F|CACNA1G_uc002irt.1_Missense_Mutation_p.S1901F|CACNA1G_uc002irv.1_Missense_Mutation_p.S1908F|CACNA1G_uc002irw.1_Missense_Mutation_p.S1896F|CACNA1G_uc002iru.1_Missense_Mutation_p.S1885F|CACNA1G_uc002irx.1_Missense_Mutation_p.S1832F|CACNA1G_uc002iry.1_Missense_Mutation_p.S1821F|CACNA1G_uc002irz.1_Missense_Mutation_p.S1825F|CACNA1G_uc002isa.1_Missense_Mutation_p.S1798F|CACNA1G_uc002isb.1_Missense_Mutation_p.S1839F|CACNA1G_uc002isc.1_Missense_Mutation_p.S1821F|CACNA1G_uc002isd.1_Missense_Mutation_p.S1807F|CACNA1G_uc002ise.1_Missense_Mutation_p.S1787F|CACNA1G_uc002isf.1_Missense_Mutation_p.S1814F|CACNA1G_uc002isg.1_Missense_Mutation_p.S1780F|CACNA1G_uc002ish.1_Missense_Mutation_p.S1787F|CACNA1G_uc002isi.1_Missense_Mutation_p.S1775F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1919	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	AGATCAGCCTCCCACTTTTCC	0.711													4	9					0	0	0.000602	0	0
OR4D2	124538	broad.mit.edu	37	17	56247058	56247058	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:56247058C>T	uc010wnp.1	+	1	42	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ACTTTGTCTTCCTGGGGCTCT	0.458													43	88					0	0	0.014410	0	0
EPX	8288	broad.mit.edu	37	17	56272328	56272328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:56272328C>T	uc002ivq.2	+	6	684	c.598C>T	c.(598-600)CGG>TGG	p.R200W		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	200					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CCACCAGGTCCGGGCTGTCTC	0.597													6	16					0	0	0.001168	0	0
MPO	4353	broad.mit.edu	37	17	56349253	56349253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:56349253C>T	uc002ivu.1	-	11	1970	c.1793G>A	c.(1792-1794)GGA>GAA	p.G598E		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	598					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	GGCATTGTATCCTGCATGGGG	0.597													39	71					0	0	0.006999	0	0
TBX4	9496	broad.mit.edu	37	17	59557286	59557286	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:59557286C>T	uc002izi.2	+	6	792	c.747C>T	c.(745-747)TTC>TTT	p.F249F	TBX4_uc010ddo.2_Silent_p.F249F|TBX4_uc010woy.1_Silent_p.F249F	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	249	T-box.				leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CCAAGGGATTCCGGGGCAGTG	0.557													36	66					0	0	0.006999	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60344530	60344530	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:60344530G>A	uc010woz.1	-	12		c.950C>T			uc010wpb.1_5'Flank	NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TTATCGGCATGAACGCCTGTT	0.602													110	171					0	0	0.014410	0	0
PSMC5	5705	broad.mit.edu	37	17	61908868	61908868	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:61908868C>T	uc002jcb.2	+	10	1013	c.972C>T	c.(970-972)GCC>GCT	p.A324A	PSMC5_uc010ddy.2_Silent_p.A301A|PSMC5_uc010ddz.2_Silent_p.A245A|PSMC5_uc002jcc.2_Silent_p.A316A|PSMC5_uc002jcd.2_Silent_p.A316A	NM_002805	NP_002796	P62195	PRS8_HUMAN	proteasome 26S ATPase subunit 5	324					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of programmed cell death|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|thyrotropin-releasing hormone receptor binding|transcription cofactor activity|transcription factor binding			large_intestine(1)	1						ATCTCCAGGCCCGGCTGGACA	0.567													32	64					0	0	0.013726	0	0
SMARCD2	6603	broad.mit.edu	37	17	61910990	61910990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:61910990G>A	uc010deb.1	-	10	1591	c.1274C>T	c.(1273-1275)GCC>GTC	p.A425V	SMARCD2_uc010wpt.1_Missense_Mutation_p.A377V|SMARCD2_uc010dea.1_Missense_Mutation_p.A350V|SMARCD2_uc010dec.1_Missense_Mutation_p.A404V	NM_001098426	NP_001091896	Q92925	SMRD2_HUMAN	SWI/SNF-related matrix-associated	425					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex	protein binding|transcription coactivator activity				0						GGTGGTAGAGGCCAGAAAATT	0.587													45	69					0	0	0.010771	0	0
CSH2	1443	broad.mit.edu	37	17	61950972	61950972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:61950972C>T	uc002jch.2	-	1	118	c.3G>A	c.(1-3)ATG>ATA	p.M1I	CSH2_uc002jcg.2_Missense_Mutation_p.M1I|CSH2_uc002jci.2_Missense_Mutation_p.M1I|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Intron	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1	1					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						TACCTGCAGCCATTGCCGCTA	0.602													7	35					0	0	0.006122	0	0
GH1	2688	broad.mit.edu	37	17	61995778	61995778	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:61995778G>A	uc002jdj.2	-	2	161	c.99C>T	c.(97-99)TCC>TCT	p.S33S	GH1_uc002jdi.2_Silent_p.S33S|GH1_uc002jdk.2_Silent_p.S33S|GH1_uc002jdl.2_Silent_p.S33S|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Silent_p.S33S	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	33					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						CAAAAAGCCTGGATAAGGGAA	0.592													72	122					0	0	0.014410	0	0
C17orf60	284021	broad.mit.edu	37	17	62461626	62461626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:62461626G>A	uc010wpz.1	+	1	875	c.40G>A	c.(40-42)GAA>AAA	p.E14K				Q7Z6M3	MILR1_HUMAN	SubName: Full=cDNA FLJ56870;	Error:Variant_position_missing_in_Q7Z6M3_after_alignment						integral to membrane|plasma membrane					0	Breast(5;6.43e-14)		BRCA - Breast invasive adenocarcinoma(8;2.18e-12)			ATGGAAGTTGGAATCTATGCA	0.378													7	16					0	0	0.003080	0	0
CCDC46	201134	broad.mit.edu	37	17	64092741	64092741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:64092741G>A	uc002jfl.2	-	7	871	c.652C>T	c.(652-654)CCT>TCT	p.P218S	CCDC46_uc002jfm.2_Missense_Mutation_p.P218S|CCDC46_uc010dep.2_Intron	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	218						centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			AGGTATCGAGGATTTTCTATC	0.244													4	39					0	0	0.000602	0	0
PRKCA	5578	broad.mit.edu	37	17	64738871	64738871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:64738871C>T	uc002jfp.1	+	13	1561	c.1517C>T	c.(1516-1518)GCC>GTC	p.A506V	PRKCA_uc002jfo.1_Missense_Mutation_p.A377V	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	506	Protein kinase.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	GATTATATCGCCCCAGAGGTA	0.448													16	27					0	0	0.004007	0	0
ABCA8	10351	broad.mit.edu	37	17	66878036	66878036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:66878036G>A	uc002jhp.2	-	29	3973	c.3794C>T	c.(3793-3795)GCC>GTC	p.A1265V	ABCA8_uc002jhq.2_Missense_Mutation_p.A1305V|ABCA8_uc010wqq.1_Missense_Mutation_p.A1300V	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1265	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ATTTCTCGTGGCTATCTTATT	0.473													46	59					0	0	0.010771	0	0
KCNJ16	3773	broad.mit.edu	37	17	68128626	68128626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:68128626G>A	uc002jin.2	+	5	884	c.398G>A	c.(397-399)GGA>GAA	p.G133E	KCNJ16_uc002jio.2_Missense_Mutation_p.G133E|KCNJ16_uc002jip.2_Missense_Mutation_p.G133E|KCNJ16_uc002jiq.2_Missense_Mutation_p.G165E	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	133	Selectivity filter (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					ACCACCATAGGATATGGTTAT	0.438													24	30					0	0	0.014323	0	0
DNAI2	64446	broad.mit.edu	37	17	72305507	72305507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:72305507G>A	uc002jkf.2	+	10	1426	c.1327G>A	c.(1327-1329)GAT>AAT	p.D443N	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA|uc002jkh.1_Silent_p.I76I|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	443	WD 5.				cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						CGAGCAGTGCGATCCCACCCT	0.612									Kartagener_syndrome				8	45					0	0	0.006214	0	0
CD300LB	124599	broad.mit.edu	37	17	72522044	72522044	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:72522044C>T	uc002jkx.2	-	2	337	c.324G>A	c.(322-324)GAG>GAA	p.E108E	CD300LB_uc010wqz.1_Silent_p.E108E	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	71	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						GGTCACTCTTCTCTCCTTGCT	0.532													71	99					0	0	0.014410	0	0
OTOP3	347741	broad.mit.edu	37	17	72943179	72943179	+	Missense_Mutation	SNP	C	T	T	rs138864901		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:72943179C>T	uc010wrr.1	+	6	1229	c.1229C>T	c.(1228-1230)CCT>CTT	p.P410L	OTOP3_uc010wrq.1_Missense_Mutation_p.P392L	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	410						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					GTCAAGAACCCTACCCGCAGC	0.622													13	47					0	0	0.001855	0	0
KCTD2	23510	broad.mit.edu	37	17	73059132	73059132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:73059132C>T	uc002jmp.2	+	6	849	c.782C>T	c.(781-783)TCG>TTG	p.S261L	KCTD2_uc010dfz.2_RNA|KCTD2_uc002jmq.2_RNA	NM_015353	NP_056168	Q14681	KCTD2_HUMAN	potassium channel tetramerisation domain	261						voltage-gated potassium channel complex	voltage-gated potassium channel activity				0	all_lung(278;0.226)					GAGAGAGGATCGCGGATGTAA	0.552													8	28					0	0	0.003080	0	0
LLGL2	3993	broad.mit.edu	37	17	73565087	73565087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:73565087G>A	uc002joh.2	+	13	1505	c.1351G>A	c.(1351-1353)GAT>AAT	p.D451N	LLGL2_uc002joi.2_Missense_Mutation_p.D451N|LLGL2_uc010dgg.1_Missense_Mutation_p.D451N|LLGL2_uc002joj.2_Missense_Mutation_p.D440N|LLGL2_uc010wsd.1_Missense_Mutation_p.D78N	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	451	WD 8.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			GCGGTTCTGGGATGCCTCGGG	0.667													9	16					0	0	0.006214	0	0
ACOX1	51	broad.mit.edu	37	17	73947504	73947504	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:73947504G>A	uc002jqf.2	-	8	1389	c.1099C>T	c.(1099-1101)CTG>TTG	p.L367L	ACOX1_uc010wsq.1_Silent_p.L329L|ACOX1_uc002jqe.2_Silent_p.L367L|ACOX1_uc010wsr.1_Silent_p.L299L	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	367					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						ACCTCAGGCAGTTCACTCAGG	0.498													33	69					0	0	0.012213	0	0
CDK3	1018	broad.mit.edu	37	17	73998186	73998186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:73998186C>T	uc010dgt.2	+	4	354	c.278C>T	c.(277-279)TCC>TTC	p.S93F	CDK3_uc002jqg.3_Missense_Mutation_p.S121F	NM_001258	NP_001249	Q00526	CDK3_HUMAN	cyclin-dependent kinase 3	93	Protein kinase.				cell division|cell proliferation|mitosis		ATP binding|cyclin-dependent protein kinase activity			central_nervous_system(1)	1						TACATGGACTCCACCCCAGGC	0.587													19	55					0	0	0.008871	0	0
EVPL	2125	broad.mit.edu	37	17	74003610	74003610	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:74003610G>A	uc002jqi.2	-	22	5904	c.5676C>T	c.(5674-5676)TCC>TCT	p.S1892S	EVPL_uc010wss.1_Silent_p.S1914S|EVPL_uc010wst.1_Silent_p.S1362S	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1892	Globular 2.|Plectin 4.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCCTCTGTGTGGAGGTGTTCT	0.652													33	71					0	0	0.013726	0	0
EVPL	2125	broad.mit.edu	37	17	74013831	74013831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:74013831G>A	uc002jqi.2	-	14	1927	c.1699C>T	c.(1699-1701)CAC>TAC	p.H567Y	EVPL_uc010wss.1_Missense_Mutation_p.H589Y|EVPL_uc010wst.1_Missense_Mutation_p.H37Y	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	567	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCATGGCTGTGGATGCGGCCC	0.687													27	45					0	0	0.006320	0	0
EVPL	2125	broad.mit.edu	37	17	74015007	74015007	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:74015007C>T	uc002jqi.2	-	11	1500	c.1272G>A	c.(1270-1272)TGG>TGA	p.W424*	EVPL_uc010wss.1_Nonsense_Mutation_p.W424*|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	424	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCCTGAGTCCCAGTCGCAGA	0.682													23	29					0	0	0.010818	0	0
AANAT	15	broad.mit.edu	37	17	74464865	74464865	+	Missense_Mutation	SNP	G	A	A	rs139841386	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:74464865G>A	uc002jro.2	+	2	271	c.37G>A	c.(37-39)GCC>ACC	p.A13T	AANAT_uc010wte.1_RNA	NM_001088	NP_001079	Q16613	SNAT_HUMAN	arylalkylamine N-acetyltransferase	13					circadian rhythm|melatonin biosynthetic process	cytosol	aralkylamine N-acetyltransferase activity				0						GAAACCTGAGGCCCCACGTCT	0.662													11	11					0	0	0.001855	0	0
SEC14L1	6397	broad.mit.edu	37	17	75202465	75202465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:75202465C>T	uc002jto.2	+	12	1591	c.1324C>T	c.(1324-1326)CCT>TCT	p.P442S	SEC14L1_uc010dhc.2_Missense_Mutation_p.P442S|SEC14L1_uc010wth.1_Missense_Mutation_p.P442S|SEC14L1_uc002jtm.2_Missense_Mutation_p.P442S|SEC14L1_uc010wti.1_Missense_Mutation_p.P408S|SEC14L1_uc010wtj.1_5'Flank|SEC14L1_uc002jtr.2_5'Flank	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	442	CRAL-TRIO.				transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						CAGGGTATTTCCTGTGCTCTG	0.542													28	37					0	0	0.012213	0	0
AFMID	125061	broad.mit.edu	37	17	76201792	76201792	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:76201792C>T	uc002jva.3	+	9	768	c.753C>T	c.(751-753)TTC>TTT	p.F251F	AFMID_uc002jvb.3_Intron|AFMID_uc002juz.3_Silent_p.F251F	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	251						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			CCCCCGAATTCCACCGACAGT	0.592													13	29					0	0	0.002450	0	0
DNAH17	8632	broad.mit.edu	37	17	76437248	76437248	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:76437248G>A	uc010dhp.1	-	17	2784	c.2562C>T	c.(2560-2562)TTC>TTT	p.F854F	DNAH17_uc002jvq.2_Silent_p.F139F|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GGCCTTCCACGAACTTGCTGC	0.602													22	31					0	0	0.003330	0	0
USP36	57602	broad.mit.edu	37	17	76794553	76794553	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:76794553G>A	uc002jvz.1	-	20	3646	c.3321C>T	c.(3319-3321)TTC>TTT	p.F1107F	USP36_uc002jwa.1_Silent_p.F1107F|USP36_uc002jvy.1_Silent_p.F167F	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	1105					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			TCACAGACCAGAAGTTCCGTC	0.473													42	73					0	0	0.014410	0	0
CCDC40	55036	broad.mit.edu	37	17	78073401	78073401	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:78073401C>T	uc010dht.2	+	20	3283	c.3256C>T	c.(3256-3258)CTG>TTG	p.L1086L	CCDC40_uc002jxm.3_Silent_p.L869L|CCDC40_uc002jxn.3_Silent_p.L482L|GAA_uc002jxo.2_5'Flank|GAA_uc002jxp.2_5'Flank|GAA_uc002jxq.2_5'Flank	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1086					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CTACGTGTTCCTGTTCCGCTC	0.607													8	56					0	0	0.003080	0	0
RNF213	57674	broad.mit.edu	37	17	78336975	78336975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:78336975C>T	uc002jyh.1	+	15	5871	c.5648C>T	c.(5647-5649)TCC>TTC	p.S1883F	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.S265F	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GAAGAGGTTTCCTTACCGTGG	0.512													35	57					0	0	0.004289	0	0
RNF213	57674	broad.mit.edu	37	17	78358865	78358865	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:78358865C>A	uc002jyh.1	+	35	8791	c.8568C>A	c.(8566-8568)TTC>TTA	p.F2856L	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TGGTAAAGTTCCTGCCTGAGA	0.453													23	45					1.64293e-13	1.81537e-13	0.003330	1	0
RPTOR	57521	broad.mit.edu	37	17	78858875	78858875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:78858875C>T	uc002jyt.1	+	17	2715	c.1910C>T	c.(1909-1911)TCC>TTC	p.S637F	RPTOR_uc010wug.1_Intron	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	637					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						ACGGACCACTCCACCACCATC	0.682													10	9					0	0	0.010729	0	0
RPTOR	57521	broad.mit.edu	37	17	78897336	78897336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:78897336G>A	uc002jyt.1	+	23	3476	c.2671G>A	c.(2671-2673)GAT>AAT	p.D891N	RPTOR_uc010wug.1_Missense_Mutation_p.D733N	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	891					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CCTGACCAACGATGTGGCCAA	0.652													19	29					0	0	0.010504	0	0
DUS1L	64118	broad.mit.edu	37	17	80019527	80019527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:80019527G>A	uc002kdq.2	-	6	1083	c.664C>T	c.(664-666)CGG>TGG	p.R222W	DUS1L_uc002kdp.2_Missense_Mutation_p.R91W|DUS1L_uc002kdr.2_Missense_Mutation_p.R222W|DUS1L_uc002kds.2_RNA|DUS1L_uc002kdt.2_RNA|DUS1L_uc010wvi.1_Missense_Mutation_p.R205W	NM_022156	NP_071439	Q6P1R4	DUS1L_HUMAN	PP3111 protein	222					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			skin(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			CCCGTGTCCCGGAGGCAGCGC	0.652													19	26					0	0	0.014323	0	0
RAB40B	10966	broad.mit.edu	37	17	80616565	80616565	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:80616565G>A	uc002kft.2	-	5	493	c.367C>T	c.(367-369)CTG>TTG	p.L123L	RAB40B_uc002kfs.2_RNA	NM_006822	NP_006813	Q12829	RB40B_HUMAN	RAB40B, member RAS oncogene family	123					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			central_nervous_system(1)	1	Breast(20;0.00132)|all_neural(118;0.0952)	all_cancers(8;0.072)|all_epithelial(8;0.139)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			TTCCCCACCAGGATCTTGGGG	0.607													16	25					0	0	0.004990	0	0
LAMA1	284217	broad.mit.edu	37	18	6971939	6971939	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:6971939C>T	uc002knm.2	-	48	6910	c.6816G>A	c.(6814-6816)TTG>TTA	p.L2272L	LAMA1_uc010wzj.1_Silent_p.L1748L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2272	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGCCTCCCCCAAGCAGCCTT	0.433													6	41					0	0	0.001984	0	0
LRRC30	339291	broad.mit.edu	37	18	7231809	7231809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:7231809C>T	uc010wzk.1	+	1	673	c.673C>T	c.(673-675)CCG>TCG	p.P225S		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	225	LRR 7.									ovary(1)|liver(1)	2						CCACTCCTTCCCGAGGTCGCT	0.582													16	35					0	0	0.004007	0	0
MC5R	4161	broad.mit.edu	37	18	13826435	13826435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:13826435G>A	uc010xaf.1	+	1	671	c.671G>A	c.(670-672)GGG>GAG	p.G224E		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	224	Cytoplasmic (Potential).			ALPGASSARQRTSM -> LCPGPALRGRGPAW (in Ref. 1).	G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						GCTCTGCCCGGGGCCAGCTCT	0.617													41	134					0	0	0.007835	0	0
MC2R	4158	broad.mit.edu	37	18	13885395	13885395	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:13885395C>T	uc002ksp.1	-	2	300	c.123G>A	c.(121-123)GAG>GAA	p.E41E		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	41	Helical; Name=1; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	CGATCAGATTCTCCAAAACTC	0.433													12	24					0	0	0.001855	0	0
MC2R	4158	broad.mit.edu	37	18	13885413	13885413	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:13885413G>A	uc002ksp.1	-	2	282	c.105C>T	c.(103-105)TCC>TCT	p.S35S		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	35	Helical; Name=1; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	CTCCAACAATGGAAATTGTGA	0.413													12	30					0	0	0.013537	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478439	14478439	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:14478439C>T	uc010xai.1	-	3		c.1125G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TCCCTGATATCGTGATGAACT	0.448													5	2					0	0	0.001984	0	0
POTEC	388468	broad.mit.edu	37	18	14542758	14542758	+	Missense_Mutation	SNP	C	T	T	rs145930826		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:14542758C>T	uc010dln.2	-	1	842	c.388G>A	c.(388-390)GAG>AAG	p.E130K	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	130								p.E130K(1)		skin(3)	3						TACCTCGGCTCCATGAAGGCG	0.607													5	104					0	0	0.003080	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997311	19997311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:19997311G>A	uc002ktv.1	-	1	568	c.464C>T	c.(463-465)TCA>TTA	p.S155L		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	155	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					AGCTACTTGTGATTTGAGGGA	0.353													29	117					0	0	0.008361	0	0
RBBP8	5932	broad.mit.edu	37	18	20564881	20564881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:20564881C>T	uc002ktw.2	+	8	968	c.637C>T	c.(637-639)CCA>TCA	p.P213S	RBBP8_uc002kty.2_Missense_Mutation_p.P213S|RBBP8_uc002ktz.2_Missense_Mutation_p.P213S|RBBP8_uc002kua.2_Missense_Mutation_p.P213S|RBBP8_uc002ktx.1_Missense_Mutation_p.P213S	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	213					cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			TTCAACTCATCCACAACATAA	0.313								Direct_reversal_of_damage|Homologous_recombination					20	49					0	0	0.010504	0	0
LAMA3	3909	broad.mit.edu	37	18	21357521	21357521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:21357521G>A	uc002kuq.2	+	11	1492	c.1406G>A	c.(1405-1407)AGA>AAA	p.R469K	LAMA3_uc010dlv.1_Missense_Mutation_p.R469K|LAMA3_uc002kur.2_Missense_Mutation_p.R469K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	469	Laminin EGF-like 3.|Domain V.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATTTTTACAGGAATTCCCATT	0.254													4	51					0	0	0.000602	0	0
IMPACT	55364	broad.mit.edu	37	18	22029803	22029803	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:22029803C>T	uc002kvh.3	+	10	892	c.780C>T	c.(778-780)GTC>GTT	p.V260V	IMPACT_uc002kvg.3_Silent_p.V242V	NM_018439	NP_060909	Q9P2X3	IMPCT_HUMAN	Impact homolog	260											0	all_cancers(21;0.00018)|all_epithelial(16;1.5e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)					TGAAGAATGTCATGGTGGTAG	0.343													13	20					0	0	0.001855	0	0
CDH2	1000	broad.mit.edu	37	18	25543453	25543453	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:25543453G>A	uc002kwg.2	-	15	2841	c.2382C>T	c.(2380-2382)GAC>GAT	p.D794D	CDH2_uc010xbn.1_Silent_p.D763D	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	794	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						GCTCCACAGTGTCAGGCTGCT	0.522													6	27					0	0	0.001984	0	0
DSC1	1823	broad.mit.edu	37	18	28711619	28711619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:28711619C>T	uc002kwn.2	-	15	2687	c.2425G>A	c.(2425-2427)GGA>AGA	p.G809R	DSC1_uc002kwm.2_Missense_Mutation_p.G809R|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	809	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CCAGTATCTCCCTGCCCCACT	0.498													31	96					0	0	0.008361	0	0
DSG1	1828	broad.mit.edu	37	18	28914104	28914104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:28914104G>A	uc002kwp.2	+	8	1156	c.944G>A	c.(943-945)GGA>GAA	p.G315E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	315	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGAAATGAAGGAAATTGGTTT	0.299													47	46					0	0	0.014410	0	0
DSG1	1828	broad.mit.edu	37	18	28916386	28916386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:28916386C>T	uc002kwp.2	+	9	1287	c.1075C>T	c.(1075-1077)CAT>TAT	p.H359Y		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	359	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TGAATTTCATCATTCAATTAT	0.343													9	28					0	0	0.004482	0	0
DSG3	1830	broad.mit.edu	37	18	29044213	29044213	+	Missense_Mutation	SNP	G	A	A	rs146025709		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29044213G>A	uc002kws.2	+	9	1248	c.1139G>A	c.(1138-1140)GGA>GAA	p.G380E		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	380	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding	p.G380E(1)		skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GTAAGAGAAGGAATTGCATTC	0.388													24	28					0	0	0.002780	0	0
DSG3	1830	broad.mit.edu	37	18	29044228	29044228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29044228C>T	uc002kws.2	+	9	1263	c.1154C>T	c.(1153-1155)CCT>CTT	p.P385L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	385	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCATTCCGTCCTGCTTCCAAG	0.393													22	26					0	0	0.012319	0	0
DSG3	1830	broad.mit.edu	37	18	29045359	29045359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29045359G>A	uc002kws.2	+	10	1459	c.1350G>A	c.(1348-1350)ATG>ATA	p.M450I		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	450	Cadherin 4.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCAAAAATATGAACCGAGATT	0.313													15	52					0	0	0.002450	0	0
DSG3	1830	broad.mit.edu	37	18	29049078	29049078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29049078G>A	uc002kws.2	+	12	1772	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	555	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAGAGCCCAGGAACAGATACC	0.418													34	98					0	0	0.003755	0	0
DSG3	1830	broad.mit.edu	37	18	29054340	29054340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29054340G>A	uc002kws.2	+	15	2467	c.2358G>A	c.(2356-2358)ATG>ATA	p.M786I	DSG3_uc002kwt.2_Missense_Mutation_p.M68I	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	786	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CGATAAGCATGAATTTTCTGG	0.398													19	65					0	0	0.012319	0	0
DSG2	1829	broad.mit.edu	37	18	29122529	29122529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29122529G>A	uc002kwu.3	+	14	2236	c.2048G>A	c.(2047-2049)GGA>GAA	p.G683E	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	683	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			AGTCTAGTAGGAAGAAATGGA	0.507													27	47					0	0	0.004656	0	0
MCART2	147407	broad.mit.edu	37	18	29339869	29339869	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29339869C>T	uc002kxa.2	-	1	975	c.756G>A	c.(754-756)AAG>AAA	p.K252K		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	252	Solcar 3.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			TTTGGAAAACCTTGGGGAAAG	0.433													23	20					0	0	0.003330	0	0
KIAA1012	22878	broad.mit.edu	37	18	29437927	29437927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:29437927G>A	uc002kxc.3	-	20	3128	c.2764C>T	c.(2764-2766)CCT>TCT	p.P922S	KIAA1012_uc002kxb.3_Missense_Mutation_p.P868S|KIAA1012_uc002kxd.3_Intron	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	922					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						AGCCCTGTAGGAAAATGTATA	0.333													53	71					0	0	0.014410	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093442	30093443	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:30093442_30093443GG>AA	uc010dmc.2	+	1		c.1817_1818GG>AA				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						TGCCCCACCCGGCTTGATTCAG	0.545													57	47					0	0	0.004672	0	0
C18orf34	374864	broad.mit.edu	37	18	30847258	30847258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:30847258C>T	uc002kxn.2	-	12	1322	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	C18orf34_uc010dme.1_5'Flank|C18orf34_uc010xbr.1_Missense_Mutation_p.E394K|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.E394K|C18orf34_uc002kxp.2_Missense_Mutation_p.E394K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	394	Potential.									ovary(1)	1						CTCAAATCTTCCAGCTAAGAA	0.259													41	45					0	0	0.008740	0	0
NOL4	8715	broad.mit.edu	37	18	31599502	31599502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:31599502C>T	uc010dmi.2	-	6	1065	c.836G>A	c.(835-837)GGG>GAG	p.G279E	NOL4_uc010xbs.1_5'UTR|NOL4_uc002kxr.3_Missense_Mutation_p.G115E|NOL4_uc010xbt.1_Missense_Mutation_p.G205E|NOL4_uc010dmh.2_Missense_Mutation_p.G205E|NOL4_uc010xbu.1_Missense_Mutation_p.G279E|NOL4_uc002kxt.3_Missense_Mutation_p.G279E|NOL4_uc010xbv.1_Missense_Mutation_p.G28E|NOL4_uc010xbw.1_Missense_Mutation_p.G165E	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	279						nucleolus	RNA binding			ovary(3)	3						GTGTGTTCCCCCTGAAGCAAT	0.463													21	28					0	0	0.014323	0	0
DTNA	1837	broad.mit.edu	37	18	32398222	32398223	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:32398222_32398223GG>AA	uc010dmn.1	+	7	805_806	c.804_805GG>AA	c.(802-807)CAGGAC>CAAAAC	p.D269N	DTNA_uc002kxu.2_Missense_Mutation_p.D269N|DTNA_uc010xbx.1_Intron|DTNA_uc002kxv.3_Missense_Mutation_p.D269N|DTNA_uc002kxw.2_Missense_Mutation_p.D269N|DTNA_uc002kxx.2_Missense_Mutation_p.D269N|DTNA_uc010dmj.2_Missense_Mutation_p.D269N|DTNA_uc002kxz.2_Missense_Mutation_p.D269N|DTNA_uc002kxy.2_Missense_Mutation_p.D269N|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.D269N|DTNA_uc002kyb.3_Missense_Mutation_p.D269N|DTNA_uc010dmm.2_Missense_Mutation_p.D269N|DTNA_uc010xby.1_Missense_Mutation_p.D19N|DTNA_uc010dmo.2_5'Flank|DTNA_uc002kyd.3_5'Flank|DTNA_uc010xbz.1_5'Flank|DTNA_uc010xca.1_5'Flank|DTNA_uc002kye.2_5'Flank	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	269	Interaction with MAGEE1 (By similarity).|ZZ-type.				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						AGCTCTGTCAGGACTGCTTCTG	0.51													14	50					0	0	0.004672	0	0
KIAA1328	57536	broad.mit.edu	37	18	34753042	34753043	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:34753042_34753043CC>TT	uc002kzz.2	+	9	1543_1544	c.1521_1522CC>TT	c.(1519-1524)TCCCGG>TCTTGG	p.R508W	KIAA1328_uc002lab.2_Missense_Mutation_p.R260C|KIAA1328_uc002lac.1_Missense_Mutation_p.R367W|KIAA1328_uc010dnc.1_RNA	NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	508										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		ACACCACCTCCCGGTAAGCTTC	0.391													42	52					0	0	0.004672	0	0
SYT4	6860	broad.mit.edu	37	18	40854289	40854289	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:40854289C>T	uc002law.2	-	2	474	c.105G>A	c.(103-105)TGG>TGA	p.W35*	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Nonsense_Mutation_p.W17*|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	35	Helical; (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						GACAGCAGATCCATGCAAAGA	0.403													13	30					0	0	0.001855	0	0
SETBP1	26040	broad.mit.edu	37	18	42281737	42281737	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:42281737C>T	uc010dni.2	+	2	722	c.426C>T	c.(424-426)TCC>TCT	p.S142S	SETBP1_uc002lay.2_Silent_p.S142S	NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	142						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AGAAGGTGTCCCGTGCTGGAA	0.458									Schinzel-Giedion_syndrome				23	28					0	0	0.014323	0	0
SLC14A2	8170	broad.mit.edu	37	18	43221253	43221253	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:43221253C>G	uc010dnj.2	+	9	1392	c.1071C>G	c.(1069-1071)ATC>ATG	p.I357M	SLC14A2_uc002lbb.2_Missense_Mutation_p.I357M|SLC14A2_uc002lbe.2_Missense_Mutation_p.I357M	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	357	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GCATCGCCATCGGAGGCATGT	0.552													8	35					0	0	0.008291	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560283	44560283	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:44560283C>T	uc002lcr.1	-	1	1706	c.1353G>A	c.(1351-1353)CCG>CCA	p.P451P	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	451					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GCACCGTTTTCGGCCCGGCGG	0.602													26	62					0	0	0.008361	0	0
SMAD7	4092	broad.mit.edu	37	18	46468879	46468879	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:46468879C>T	uc002ldg.2	-	3	1001	c.714G>A	c.(712-714)ACG>ACA	p.T238T	SMAD7_uc002ldf.2_Silent_p.T50T|SMAD7_uc010xde.1_Silent_p.T23T	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	238					adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					CCAGATAATTCGTTCCCCCTG	0.443													37	133					0	0	0.006230	0	0
MYO5B	4645	broad.mit.edu	37	18	47352939	47352939	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:47352939T>G	uc002leb.2	-	40	5737	c.5449A>C	c.(5449-5451)ATG>CTG	p.M1817L	MYO5B_uc002ldz.2_Missense_Mutation_p.M387L|MYO5B_uc002lea.2_Missense_Mutation_p.M932L	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1817					protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		ACAGGAAACATGTGCTTGGCA	0.423													26	37					0	0	0.004656	0	0
MYO5B	4645	broad.mit.edu	37	18	47428972	47428972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:47428972C>T	uc002leb.2	-	21	3091	c.2803G>A	c.(2803-2805)GAT>AAT	p.D935N	MYO5B_uc002lea.2_Missense_Mutation_p.D76N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	935	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		ACCTGCTCATCGATCTTCCGC	0.582													21	54					0	0	0.012319	0	0
MYO5B	4645	broad.mit.edu	37	18	47480796	47480796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:47480796C>T	uc002leb.2	-	13	1843	c.1555G>A	c.(1555-1557)GGA>AGA	p.G519R	MYO5B_uc002lec.1_Missense_Mutation_p.G518R	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	519	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGGTCAGTTCCTTTGGGGACC	0.577													27	36					0	0	0.005443	0	0
MYO5B	4645	broad.mit.edu	37	18	47566675	47566675	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:47566675A>T	uc002leb.2	-	3	436	c.148T>A	c.(148-150)TAC>AAC	p.Y50N	MYO5B_uc002lec.1_Missense_Mutation_p.Y49N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	50	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCAATTGGGTATTCCAGAATC	0.438													96	139					0	0	0.014410	0	0
CCDC11	220136	broad.mit.edu	37	18	47765069	47765069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:47765069C>T	uc002lee.2	-	7	1311	c.1220G>A	c.(1219-1221)CGA>CAA	p.R407Q		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	407	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TTTAGCTTCTCGTTGCACTAA	0.353													16	20					0	0	0.004990	0	0
SKA1	220134	broad.mit.edu	37	18	47911610	47911610	+	Silent	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:47911610T>G	uc002let.2	+	5	520	c.336T>G	c.(334-336)CCT>CCG	p.P112P	SKA1_uc002leu.2_Silent_p.P112P|SKA1_uc010xdl.1_Intron	NM_145060	NP_659497	Q96BD8	SKA1_HUMAN	spindle and KT associated 1	112					cell division|chromosome segregation|mitotic anaphase|mitotic prometaphase|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytosol|spindle microtubule	microtubule binding				0						ATCTTGATCCTGAAGAACCAA	0.373													30	100					0	0	0.010818	0	0
DCC	1630	broad.mit.edu	37	18	50450136	50450136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:50450136G>A	uc002lfe.1	+	4	1344	c.757G>A	c.(757-759)GAA>AAA	p.E253K	DCC_uc010xdr.1_Missense_Mutation_p.E101K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	253	Extracellular (Potential).|Ig-like C2-type 3.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGTAGCCATTGAAGGAAAAGA	0.423													29	25					0	0	0.007291	0	0
DCC	1630	broad.mit.edu	37	18	50866254	50866254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:50866254G>A	uc002lfe.1	+	15	2923	c.2336G>A	c.(2335-2337)CGA>CAA	p.R779Q	DCC_uc010xdr.1_Missense_Mutation_p.R627Q|DCC_uc010dpf.1_Missense_Mutation_p.R434Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	779	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCAAGCAGCGATATTATTCC	0.398													7	30					0	0	0.001984	0	0
DCC	1630	broad.mit.edu	37	18	50912476	50912476	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:50912476T>A	uc002lfe.1	+	16	3010	c.2423T>A	c.(2422-2424)CTT>CAT	p.L808H	DCC_uc010xdr.1_Missense_Mutation_p.L656H|DCC_uc010dpf.1_Missense_Mutation_p.L463H	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	808	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GGAGTTCCTCTTTATGAAAGT	0.348													13	36					0	0	0.004007	0	0
DCC	1630	broad.mit.edu	37	18	50918214	50918214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:50918214C>T	uc002lfe.1	+	17	3232	c.2645C>T	c.(2644-2646)ACC>ATC	p.T882I	DCC_uc010xdr.1_Missense_Mutation_p.T710I|DCC_uc010dpf.1_Missense_Mutation_p.T517I	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	882	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CGACTTTACACCGTCCGGTGG	0.448													30	40					0	0	0.007291	0	0
DCC	1630	broad.mit.edu	37	18	50937012	50937012	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:50937012G>A	uc002lfe.1	+	20	3713	c.3126G>A	c.(3124-3126)CTG>CTA	p.L1042L	DCC_uc010xdr.1_Silent_p.L870L|DCC_uc010dpf.1_Silent_p.L677L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1042	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCAGGACTCTGAAAGGTTTGA	0.388													24	29					0	0	0.003954	0	0
WDR7	23335	broad.mit.edu	37	18	54339790	54339790	+	Missense_Mutation	SNP	G	A	A	rs143281590		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:54339790G>A	uc002lgk.1	+	2	255	c.44G>A	c.(43-45)CGA>CAA	p.R15Q	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.R15Q	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	15										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		CTTTGGGGTCGAAAAGCGCCC	0.413													21	21					0	0	0.005443	0	0
WDR7	23335	broad.mit.edu	37	18	54424156	54424157	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:54424156_54424157CC>TT	uc002lgk.1	+	15	2543_2544	c.2332_2333CC>TT	c.(2332-2334)CCT>TTT	p.P778F	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.P778F	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	778										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		AGAAAGTGATCCTGAATATCGG	0.426													6	26					0	0	0.004672	0	0
ST8SIA3	51046	broad.mit.edu	37	18	55024564	55024564	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:55024564C>T	uc002lgn.2	+	3	1080	c.723C>T	c.(721-723)GCC>GCT	p.A241A		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	241	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		TTGACGGGGCCATTCTTTGGA	0.413													20	42					0	0	0.008871	0	0
ATP8B1	5205	broad.mit.edu	37	18	55319961	55319961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:55319961C>T	uc002lgw.2	-	24	3016	c.3016G>A	c.(3016-3018)GAT>AAT	p.D1006N	uc002lgu.1_Intron|uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	1006	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				TCACTCACATCCTTAAGGAGA	0.363									Byler_disease				32	30					0	0	0.003755	0	0
ALPK2	115701	broad.mit.edu	37	18	56274597	56274597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:56274597C>T	uc002lhj.3	-	3	398	c.184G>A	c.(184-186)GAA>AAA	p.E62K		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	62	Ig-like 1.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCAAAGAATTCATAGTTGGAA	0.398													39	42					0	0	0.005524	0	0
LMAN1	3998	broad.mit.edu	37	18	57014785	57014785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:57014785G>A	uc002lhz.2	-	7	814	c.782C>T	c.(781-783)TCT>TTT	p.S261F		NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	261	Lumenal (Potential).|L-type lectin-like.				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	AGTCAGAAAAGAAAGGACATC	0.284													19	12					0	0	0.010504	0	0
CDH20	28316	broad.mit.edu	37	18	59157870	59157870	+	Silent	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:59157870T>A	uc010dps.1	+	1	96	c.84T>A	c.(82-84)CTT>CTA	p.L28L	CDH20_uc002lif.2_Silent_p.L22L	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	28					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TGATGGACCTTACGACCACCG	0.527													35	32					0	0	0.013726	0	0
RNF152	220441	broad.mit.edu	37	18	59483237	59483237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:59483237C>T	uc002lih.1	-	2	872	c.460G>A	c.(460-462)GAG>AAG	p.E154K		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	154					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CTGTCCTGCTCCTCCTCCACC	0.652													30	29					0	0	0.008361	0	0
SERPINB12	89777	broad.mit.edu	37	18	61233848	61233848	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61233848G>A	uc010xen.1	+	7	822	c.822G>A	c.(820-822)AGG>AGA	p.R274R	SERPINB12_uc010xeo.1_Silent_p.R294R	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	274					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AGCTTGAAAGGAAAATCACCT	0.463													48	78					0	0	0.014410	0	0
SERPINB13	5275	broad.mit.edu	37	18	61261698	61261698	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61261698A>G	uc002ljc.2	+	6	750	c.582A>G	c.(580-582)GAA>GAG	p.E194E	SERPINB13_uc002ljd.2_Silent_p.E58E|SERPINB13_uc010xep.1_Silent_p.E203E|SERPINB13_uc010xeq.1_Silent_p.E15E|SERPINB13_uc010xer.1_Silent_p.E15E	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	194					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						TTAAGAAAGAAAATACTAAGG	0.373													9	35					0	0	0.010729	0	0
SERPINB4	6318	broad.mit.edu	37	18	61304960	61304960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61304960G>A	uc002ljf.2	-	8	1252	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	SERPINB4_uc002lje.2_Missense_Mutation_p.S368F|SERPINB4_uc002ljg.2_Missense_Mutation_p.S389F	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	389					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CATCTATGGGGATGAGAATCT	0.398													56	46					0	0	0.014410	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324085	61324085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61324085C>T	uc002ljg.2	-	6	774	c.748G>A	c.(748-750)GAA>AAA	p.E250K	SERPINB3_uc002lji.2_Missense_Mutation_p.E250K|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	250					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CCATCGATTTCATTTGGCAGC	0.413													45	34					0	0	0.014410	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324626	61324626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61324626G>A	uc002ljg.2	-	5	516	c.490C>T	c.(490-492)CCT>TCT	p.P164S	SERPINB3_uc002lji.2_Missense_Mutation_p.P164S|SERPINB3_uc010dqa.2_Missense_Mutation_p.P164S			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	164					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TTACCTTCAGGAATTAGGTTT	0.353													31	39					0	0	0.012213	0	0
SERPINB10	5273	broad.mit.edu	37	18	61587039	61587039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61587039G>A	uc010xev.1	+	5	480	c.390G>A	c.(388-390)ATG>ATA	p.M130I	SERPINB10_uc010xew.1_Missense_Mutation_p.M130I	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	130						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				TAGAAGACATGAAAACATATT	0.338													9	51					0	0	0.006214	0	0
HMSD	284293	broad.mit.edu	37	18	61620722	61620722	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:61620722C>T	uc010dqj.2	+	2	182	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_001123366	NP_001116838	A8MTL9	HMSD_HUMAN	histocompatibility (minor) serpin domain	11						extracellular region	serine-type endopeptidase inhibitor activity				0						CCATGGTTTTCATGGGGGCAA	0.413													12	11					0	0	0.002450	0	0
DSEL	92126	broad.mit.edu	37	18	65180536	65180536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:65180536G>A	uc002lke.1	-	2	2564	c.1340C>T	c.(1339-1341)TCT>TTT	p.S447F		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	437						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CAGCTTCCCAGATTTAAAAGA	0.458													12	28					0	0	0.013537	0	0
CNDP1	84735	broad.mit.edu	37	18	72234659	72234659	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:72234659C>T	uc002llq.2	+	6	958	c.747C>T	c.(745-747)TTC>TTT	p.F249F	CNDP1_uc002lls.2_Silent_p.F52F	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	249					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		ACAGCTACTTCATGGTGGAGG	0.502													9	47					0	0	0.006214	0	0
ZNF516	9658	broad.mit.edu	37	18	74153874	74153874	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:74153874G>A	uc010dqx.1	-	2	1372	c.1137C>T	c.(1135-1137)ACC>ACT	p.T379T	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		AGAACTGCTTGGTGTCCGAGG	0.726													4	5					0	0	0.009096	0	0
SALL3	27164	broad.mit.edu	37	18	76752328	76752328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:76752328G>A	uc002lmt.2	+	2	337	c.337G>A	c.(337-339)GAG>AAG	p.E113K	SALL3_uc010dra.2_5'Flank	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	113					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGAGGCGGCCGAGGAGGCGGG	0.726													4	1					0	0	0.000602	0	0
ATP9B	374868	broad.mit.edu	37	18	76870473	76870473	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:76870473C>T	uc002lmx.2	+	3	426	c.412C>T	c.(412-414)CAA>TAA	p.Q138*	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Nonsense_Mutation_p.Q138*|ATP9B_uc002lmy.1_RNA|ATP9B_uc002lmz.1_5'Flank|ATP9B_uc002lmu.2_Nonsense_Mutation_p.Q138*	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	138	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		TATAAAAAATCAAAAATACAA	0.383													10	18					0	0	0.013537	0	0
C19orf6	91304	broad.mit.edu	37	19	1013325	1013325	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:1013325G>A	uc002lqr.1	-	3	668	c.522C>T	c.(520-522)ATC>ATT	p.I174I	C19orf6_uc002lqq.1_5'Flank|C19orf6_uc002lqs.1_Silent_p.I174I	NM_001033026	NP_001028198	Q4ZIN3	MBRL_HUMAN	membralin isoform 1	174						cytoplasm|integral to membrane				pancreas(2)|breast(1)	3		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.0252)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTTGGGCTCGATGTCCAGCT	0.632													24	48					0	0	0.003330	0	0
HMHA1	23526	broad.mit.edu	37	19	1080997	1080997	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:1080997C>T	uc002lqz.1	+	17	2355	c.2124C>T	c.(2122-2124)CTC>CTT	p.L708L	HMHA1_uc010xgd.1_Silent_p.L724L|HMHA1_uc010xge.1_Silent_p.L576L|HMHA1_uc002lra.1_Silent_p.L548L|HMHA1_uc002lrb.1_Silent_p.L591L|HMHA1_uc002lrc.1_Silent_p.L343L|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	708	Phorbol-ester/DAG-type.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCGGAAGCTCCGCACGCCCG	0.687													6	17					0	0	0.001168	0	0
ADAMTSL5	339366	broad.mit.edu	37	19	1507247	1507247	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:1507247G>A	uc002ltd.2	-	9	1290	c.846C>T	c.(844-846)CTC>CTT	p.L282L	ADAMTSL5_uc010dsl.2_Silent_p.L51L|ADAMTSL5_uc010xgq.1_Silent_p.L292L	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	282						proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACCTGTAGGAGCAGGTCAT	0.677													40	70					0	0	0.006999	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785695	1785695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:1785695C>T	uc002ltw.2	-	26	3400	c.3166G>A	c.(3166-3168)GAG>AAG	p.E1056K	ATP8B3_uc002ltv.2_Missense_Mutation_p.E1019K|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1056	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGCTCTGCTCTGCGCTCACG	0.622													9	12					0	0	0.008291	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881283	1881283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:1881283G>A	uc002lug.2	-	2	689	c.283C>T	c.(283-285)CGC>TGC	p.R95C	FAM108A1_uc002lud.2_Missense_Mutation_p.R95C|FAM108A1_uc002lue.2_Missense_Mutation_p.R95C|FAM108A1_uc002luf.2_Missense_Mutation_p.R95C	NM_001130111	NP_001123583	Q96GS6	F18A1_HUMAN	hypothetical protein LOC81926 isoform 2	95						extracellular region	hydrolase activity				0		Ovarian(11;0.000137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGTTGCCGCGGGCGCTCTTG	0.682													19	30					0	0	0.013726	0	0
CSNK1G2	1455	broad.mit.edu	37	19	1978940	1978940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:1978940G>A	uc002lul.3	+	7	1053	c.530G>A	c.(529-531)GGG>GAG	p.G177E	CSNK1G2_uc010dsu.2_Missense_Mutation_p.G129E	NM_001319	NP_001310	P78368	KC1G2_HUMAN	casein kinase 1, gamma 2	177	Protein kinase.				sphingolipid metabolic process|Wnt receptor signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity			stomach(1)	1		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCGCCCGGGGACCAAGCGG	0.627													21	38					0	0	0.002780	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408447	2408447	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:2408447C>T	uc010xgx.1	+	7	834	c.834C>T	c.(832-834)ATC>ATT	p.I278I	TMPRSS9_uc002lvv.1_Silent_p.I312I	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	278	Extracellular (Potential).|Peptidase S1 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGTCCAGATCGTCAAGCACC	0.667													31	58					0	0	0.003271	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2422192	2422192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:2422192G>A	uc010xgx.1	+	13	2393	c.2393G>A	c.(2392-2394)GGA>GAA	p.G798E		NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	798	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTGCTAGGGGACAGACGCCA	0.662													31	65					0	0	0.006230	0	0
THOP1	7064	broad.mit.edu	37	19	2811680	2811680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:2811680C>T	uc002lwj.2	+	12	2011	c.1856C>T	c.(1855-1857)TCC>TTC	p.S619F	THOP1_uc010xgz.1_Missense_Mutation_p.S498F|THOP1_uc002lwk.2_Missense_Mutation_p.S130F	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	619					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGTGTATTCCATGGACATG	0.612													26	41					0	0	0.004656	0	0
ZNF556	80032	broad.mit.edu	37	19	2873574	2873574	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:2873574C>T	uc002lwp.1	+	2	171	c.84C>T	c.(82-84)CTC>CTT	p.L28L	ZNF556_uc002lwq.2_Silent_p.L28L	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGAAAACTCTACAGAGATG	0.438													39	53					0	0	0.006230	0	0
TLE2	7089	broad.mit.edu	37	19	3005910	3005910	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:3005910G>A	uc002lww.2	-	16	1820	c.1557C>T	c.(1555-1557)ATC>ATT	p.I519I	TLE2_uc010xhb.1_Silent_p.I186I|TLE2_uc010dth.2_Silent_p.I520I|TLE2_uc010xhc.1_Silent_p.I397I|TLE2_uc010dti.2_Silent_p.I533I	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	519	WD 2.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCGCCCACGATCAGACTCC	0.652													32	42					0	0	0.010818	0	0
ZBTB7A	51341	broad.mit.edu	37	19	4054681	4054681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:4054681G>A	uc002lzh.2	-	2	625	c.550C>T	c.(550-552)CCG>TCG	p.P184S	ZBTB7A_uc002lzi.2_Missense_Mutation_p.P184S	NM_015898	NP_056982	O95365	ZBT7A_HUMAN	zinc finger and BTB domain containing 7A	184	Ala-rich.				cell differentiation|multicellular organismal development|transcription, DNA-dependent	nucleus	DNA binding|histone acetyltransferase binding|zinc ion binding			pancreas(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.014)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGACCACGGGAAGCTGGCA	0.587													5	5					0	0	0.000602	0	0
CCDC94	55702	broad.mit.edu	37	19	4249240	4249240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:4249240G>A	uc002lzv.3	+	2	73	c.40G>A	c.(40-42)GAC>AAC	p.D14N		NM_018074	NP_060544	Q9BW85	CCD94_HUMAN	coiled-coil domain containing 94	14											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0348)|STAD - Stomach adenocarcinoma(1328;0.183)		CTACCCGCCGGACTTTGACCC	0.582													17	29					0	0	0.004990	0	0
CCDC94	55702	broad.mit.edu	37	19	4254406	4254406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:4254406C>T	uc002lzv.3	+	4	358	c.325C>T	c.(325-327)CAG>TAG	p.Q109*		NM_018074	NP_060544	Q9BW85	CCD94_HUMAN	coiled-coil domain containing 94	109	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0348)|STAD - Stomach adenocarcinoma(1328;0.183)		GCGGAATTTCCAGGCTGAGAA	0.428													22	36					0	0	0.002780	0	0
SHD	56961	broad.mit.edu	37	19	4280097	4280097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:4280097G>A	uc002lzw.2	+	1	1500	c.37G>A	c.(37-39)GGT>AGT	p.G13S	SHD_uc010dtu.2_Missense_Mutation_p.G13S	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	13											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCTTTGGGGGTCGGAGGCC	0.677													9	18					0	0	0.008291	0	0
CHAF1A	10036	broad.mit.edu	37	19	4429766	4429766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:4429766C>T	uc002mal.2	+	10	1935	c.1835C>T	c.(1834-1836)TCC>TTC	p.S612F		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	612					cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGGGAGTCCCTGTCCCAC	0.532								Chromatin_Structure					45	89					0	0	0.014410	0	0
PLIN4	729359	broad.mit.edu	37	19	4512668	4512668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:4512668G>A	uc002mar.1	-	3	1262	c.1262C>T	c.(1261-1263)ACC>ATC	p.T421I	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	421	10.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						ACTGCAGACGGTGTCCTTTGT	0.552													45	66					0	0	0.014410	0	0
PTPRS	5802	broad.mit.edu	37	19	5220054	5220054	+	Missense_Mutation	SNP	G	A	A	rs114904537	by1000genomes	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:5220054G>A	uc002mbv.2	-	22	3895	c.3661C>T	c.(3661-3663)CAT>TAT	p.H1221Y	PTPRS_uc002mbu.1_Missense_Mutation_p.H790Y|PTPRS_uc010xin.1_Missense_Mutation_p.H790Y|PTPRS_uc002mbw.2_Missense_Mutation_p.H1199Y|PTPRS_uc002mbx.2_Missense_Mutation_p.H794Y|PTPRS_uc002mby.2_Missense_Mutation_p.H790Y	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1221	Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TCGCCGGGATGGAACGTGGGT	0.642													28	46					0	0	0.003755	0	0
TMEM146	257062	broad.mit.edu	37	19	5729904	5729904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:5729904G>A	uc002mda.2	+	4	286	c.225G>A	c.(223-225)ATG>ATA	p.M75I	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	75	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTTTCACAATGGATAACTTTG	0.303													36	50					0	0	0.005524	0	0
EMR1	2015	broad.mit.edu	37	19	6906464	6906464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:6906464G>A	uc002mfw.2	+	9	1008	c.970G>A	c.(970-972)GAA>AAA	p.E324K	EMR1_uc010dvc.2_Missense_Mutation_p.E324K|EMR1_uc010dvb.2_Missense_Mutation_p.E272K|EMR1_uc010xji.1_Missense_Mutation_p.E183K|EMR1_uc010xjj.1_Missense_Mutation_p.E147K	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	324	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CAAATGTAAGGAAGATGTGAT	0.393													23	47					0	0	0.003330	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7521226	7521226	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:7521226C>T	uc002mgi.2	+	8	1807	c.1554C>T	c.(1552-1554)ATC>ATT	p.I518I	ARHGEF18_uc010xjm.1_Silent_p.I360I|ARHGEF18_uc002mgh.2_Silent_p.I360I|ARHGEF18_uc002mgj.1_Silent_p.I161I	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	518	PH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				TCCTGGCTATCCTGCTGACCG	0.488													185	326					0	0	0.014410	0	0
PNPLA6	10908	broad.mit.edu	37	19	7614993	7614993	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:7614993C>T	uc010xjq.1	+	16	2031	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F	PNPLA6_uc002mgq.1_Silent_p.F564F|PNPLA6_uc010xjp.1_Silent_p.F538F|PNPLA6_uc002mgr.1_Silent_p.F564F|PNPLA6_uc002mgs.2_Silent_p.F603F	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	603	cNMP 2.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						AGTCCGACTTCTATGAGTATG	0.607													33	55					0	0	0.003755	0	0
TIMM44	10469	broad.mit.edu	37	19	7998441	7998441	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:7998441A>C	uc002miz.2	-	7	700	c.698T>G	c.(697-699)GTC>GGC	p.V233G	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	233					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						GTGCAGCACGACCCCCAGGGC	0.652													56	146					0	0	0.014410	0	0
FBN3	84467	broad.mit.edu	37	19	8176036	8176036	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:8176036G>A	uc002mjf.2	-	32	4137	c.4116C>T	c.(4114-4116)CTC>CTT	p.L1372L		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1372	EGF-like 21; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGTTGTCACAGAGGTCCACGT	0.657													13	33					0	0	0.013537	0	0
MYO1F	4542	broad.mit.edu	37	19	8604837	8604837	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:8604837C>T	uc002mkg.2	-	16	1800	c.1686G>A	c.(1684-1686)AAG>AAA	p.K562K		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	562	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CCACCTTGATCTTGGAGCCGG	0.632													24	28					0	0	0.007291	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841876	8841876	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:8841876C>T	uc010xkg.1	+	1	486	c.486C>T	c.(484-486)ATC>ATT	p.I162I		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						AGACCTCCATCACCCTGCATT	0.552													68	87					0	0	0.014410	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953432	8953432	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:8953432C>T	uc002mko.2	+	1	164	c.78C>T	c.(76-78)ATC>ATT	p.I26I		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	26	Transcription repressor.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GCACCTCAATCCCTTTGAGAA	0.468													17	25					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	8993443	8993443	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:8993443C>T	uc002mkp.2	-	66	41850	c.41646G>A	c.(41644-41646)CTG>CTA	p.L13882L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L699L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13885	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGCTGGCTCAGCTCCAAAT	0.592													46	64					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9008192	9008193	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9008192_9008193CC>TT	uc002mkp.2	-	41	39563_39564	c.39359_39360GG>AA	c.(39358-39360)CGG>CAA	p.R13120Q	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13122	Extracellular (Potential).|SEA 7.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGACTGTTCCGGTCCAGGGT	0.545													75	129					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9024193	9024193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9024193C>T	uc002mkp.2	-	18	37283	c.37079G>A	c.(37078-37080)GGG>GAG	p.G12360E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12362	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGAGGTCCCAGGAGCTGA	0.483													7	15					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9027222	9027222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9027222G>A	uc002mkp.2	-	13	36868	c.36664C>T	c.(36664-36666)CCC>TCC	p.P12222S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12224	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTACTCGTGGGGCTGGGGCTG	0.478													5	14					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9046853	9046853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9046853G>A	uc002mkp.2	-	5	34982	c.34778C>T	c.(34777-34779)CCC>CTC	p.P11593L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11595	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAAAGTTGGGAATTGTCCC	0.522													30	56					0	0	0.010818	0	0
MUC16	94025	broad.mit.edu	37	19	9048058	9048058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9048058C>T	uc002mkp.2	-	5	33777	c.33573G>A	c.(33571-33573)ATG>ATA	p.M11191I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11193	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGCTGAAATCATCTTTGCCT	0.453													20	22					0	0	0.007413	0	0
MUC16	94025	broad.mit.edu	37	19	9048675	9048675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9048675C>T	uc002mkp.2	-	5	33160	c.32956G>A	c.(32956-32958)GGA>AGA	p.G10986R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10988	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCACCATTCCTGGTACCTCA	0.493													29	48					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9048764	9048764	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9048764A>G	uc002mkp.2	-	5	33071	c.32867T>C	c.(32866-32868)CTT>CCT	p.L10956P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10958	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTCACCAAGAGAAAAAGT	0.498													15	85					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9048771	9048771	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9048771A>G	uc002mkp.2	-	5	33064	c.32860T>C	c.(32860-32862)TTT>CTT	p.F10954L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10956	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAAGAGAAAAAGTCAGAATT	0.483													10	84					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9057605	9057605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9057605C>T	uc002mkp.2	-	3	30045	c.29841G>A	c.(29839-29841)ATG>ATA	p.M9947I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9949	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTCTGACATCATGGATGAGG	0.478													129	190					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9061493	9061493	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9061493C>T	uc002mkp.2	-	3	26157	c.25953G>A	c.(25951-25953)GGG>GGA	p.G8651G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8653	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAATCACAGTCCCTACATTGA	0.438													26	49					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9061789	9061789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9061789G>A	uc002mkp.2	-	3	25861	c.25657C>T	c.(25657-25659)CCC>TCC	p.P8553S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8555	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCACAGAGGGAAGGCTCGGC	0.507													7	33					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9066175	9066175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9066175C>T	uc002mkp.2	-	3	21475	c.21271G>A	c.(21271-21273)GAA>AAA	p.E7091K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7093	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGGATTTTCCAGAGAGGGA	0.502													21	42					0	0	0.010504	0	0
MUC16	94025	broad.mit.edu	37	19	9068160	9068160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9068160G>A	uc002mkp.2	-	3	19490	c.19286C>T	c.(19285-19287)ACC>ATC	p.T6429I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6431	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAAAGCATGGTGACAGATCT	0.512													70	130					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9071105	9071105	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9071105C>T	uc002mkp.2	-	3	16545	c.16341G>A	c.(16339-16341)TCG>TCA	p.S5447S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5449	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTGGCTTTCGATGTCTCTG	0.493													88	133					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9071673	9071673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9071673G>A	uc002mkp.2	-	3	15977	c.15773C>T	c.(15772-15774)TCC>TTC	p.S5258F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5260	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTAATAGAGGAGGTGAAGAC	0.502													42	83					0	0	0.010771	0	0
MUC16	94025	broad.mit.edu	37	19	9073701	9073701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9073701G>A	uc002mkp.2	-	3	13949	c.13745C>T	c.(13744-13746)TCA>TTA	p.S4582L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4584	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACCAGGTATTGATATAGAAGC	0.517													19	44					0	0	0.012319	0	0
MUC16	94025	broad.mit.edu	37	19	9074883	9074883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9074883G>A	uc002mkp.2	-	3	12767	c.12563C>T	c.(12562-12564)CCT>CTT	p.P4188L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4190	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGGTCACAGGTGGAGTAGA	0.502													35	71					0	0	0.003271	0	0
MUC16	94025	broad.mit.edu	37	19	9076887	9076887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9076887G>A	uc002mkp.2	-	3	10763	c.10559C>T	c.(10558-10560)TCA>TTA	p.S3520L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3521	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCAGGAGATGAAGTCTGAGA	0.507													61	116					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9088356	9088356	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9088356G>A	uc002mkp.2	-	1	3663	c.3459C>T	c.(3457-3459)ATC>ATT	p.I1153I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1153	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGAGGACAAGATGCCAAGCC	0.478													37	65					0	0	0.003271	0	0
OR7G2	390882	broad.mit.edu	37	19	9212964	9212964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9212964C>T	uc010xkk.1	-	1	1019	c.1019G>A	c.(1018-1020)GGA>GAA	p.G340E		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	319	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAACCTGAATCCAAAGCAAAT	0.353													20	39					0	0	0.014323	0	0
ZNF317	57693	broad.mit.edu	37	19	9270815	9270816	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9270815_9270816CC>TT	uc002mku.2	+	7	769_770	c.494_495CC>TT	c.(493-495)TCC>TTT	p.S165F	ZNF317_uc002mkv.2_Missense_Mutation_p.S24F|ZNF317_uc002mkw.2_Missense_Mutation_p.S133F|ZNF317_uc002mkx.2_Missense_Mutation_p.S80F|ZNF317_uc002mky.2_Missense_Mutation_p.S48F	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	165					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAGAGAAGTCCACTGAATACG	0.515													19	43					0	0	0.004672	0	0
OR7D4	125958	broad.mit.edu	37	19	9324628	9324628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9324628C>T	uc002mla.1	-	1	886	c.886G>A	c.(886-888)GAT>AAT	p.D296N		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCCTTCACATCCTTGTTCCTC	0.567													5	53					0	0	0.003080	0	0
OR7D4	125958	broad.mit.edu	37	19	9324872	9324872	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9324872G>A	uc002mla.1	-	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGGAGAAGAGGATCCCAGCTA	0.527													35	71					0	0	0.004289	0	0
Unknown	0	broad.mit.edu	37	19	9801330	9801330	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:9801330C>T	uc010xkx.1	-	3	1160	c.537G>A	c.(535-537)GGG>GGA	p.G179G						RecName: Full=Zinc finger protein 562;																		TGAAGGCTTTCCCACATTCCG	0.378													26	54					0	0	0.004656	0	0
ICAM5	7087	broad.mit.edu	37	19	10405091	10405091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:10405091G>A	uc002mnu.3	+	9	2070	c.2005G>A	c.(2005-2007)GAT>AAT	p.D669N	ICAM5_uc002mnv.3_Missense_Mutation_p.D544N	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	669	Extracellular (Potential).|Ig-like C2-type 8.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			ACCGGAGATGGATGAATCTAC	0.692													17	41					0	0	0.004990	0	0
KEAP1	9817	broad.mit.edu	37	19	10600376	10600376	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:10600376C>T	uc002moq.1	-	4	1635	c.1479G>A	c.(1477-1479)GAG>GAA	p.E493E	KEAP1_uc002mop.1_Silent_p.E211E|KEAP1_uc002mor.1_Silent_p.E493E	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	493	Kelch 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			ACTCGTTCCTCTCTGGGTAGT	0.597													35	66					0	0	0.006230	0	0
AP1M2	10053	broad.mit.edu	37	19	10685607	10685607	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:10685607G>A	uc002mpc.2	-	10	1230	c.1146C>T	c.(1144-1146)ATC>ATT	p.I382I	AP1M2_uc002mpd.2_Silent_p.I384I	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	382	MHD.				cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			TGAAGTAGGGGATCTCAAACT	0.612													10	9					0	0	0.006214	0	0
SMARCA4	6597	broad.mit.edu	37	19	11097073	11097073	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:11097073G>A	uc002mqf.3	+	4	848	c.564G>A	c.(562-564)AAG>AAA	p.K188K	SMARCA4_uc010dxp.2_Silent_p.K188K|SMARCA4_uc010dxo.2_Silent_p.K188K|SMARCA4_uc002mqg.1_Silent_p.K188K|SMARCA4_uc010dxq.2_Silent_p.K188K|SMARCA4_uc010dxr.2_Silent_p.K188K|SMARCA4_uc002mqj.3_Silent_p.K188K|SMARCA4_uc010dxs.2_Silent_p.K188K|SMARCA4_uc002mqe.2_Silent_p.K188K	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	188	Necessary for interaction with SS18L1/CREST (By similarity).				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				TGGCCTACAAGATGCTGGCCA	0.652			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				3	10					0	0	0.004672	0	0
SMARCA4	6597	broad.mit.edu	37	19	11100040	11100040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:11100040C>T	uc002mqf.3	+	7	1450	c.1166C>T	c.(1165-1167)CCC>CTC	p.P389L	SMARCA4_uc010dxp.2_Missense_Mutation_p.P389L|SMARCA4_uc010dxo.2_Missense_Mutation_p.P389L|SMARCA4_uc002mqg.1_Missense_Mutation_p.P389L|SMARCA4_uc010dxq.2_Missense_Mutation_p.P389L|SMARCA4_uc010dxr.2_Missense_Mutation_p.P389L|SMARCA4_uc002mqj.3_Missense_Mutation_p.P389L|SMARCA4_uc010dxs.2_Missense_Mutation_p.P389L|SMARCA4_uc002mqe.2_Missense_Mutation_p.P389L	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	389					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GAAAACCTTCCCGGGTCCCTG	0.617			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				46	84					0	0	0.011902	0	0
KANK2	25959	broad.mit.edu	37	19	11304039	11304040	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:11304039_11304040GG>AA	uc010dxv.2	-	6	1274_1275	c.716_717CC>TT	c.(715-717)CCC>CTT	p.P239L	KANK2_uc002mqm.2_Missense_Mutation_p.P239L|KANK2_uc002mqo.3_Missense_Mutation_p.P239L|KANK2_uc002mqp.1_Missense_Mutation_p.P48L|KANK2_uc002mqq.2_Missense_Mutation_p.P239L	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	239											0						GGCCCGCTGTGGGGTGGCCCAG	0.644													11	14					0	0	0.004672	0	0
DOCK6	57572	broad.mit.edu	37	19	11338069	11338069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:11338069C>T	uc002mqs.3	-	24	2940	c.2899G>A	c.(2899-2901)GAC>AAC	p.D967N	DOCK6_uc010xlq.1_Missense_Mutation_p.D306N	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	967					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GCAGTGATGTCGTCCAGGAAG	0.562													9	4					0	0	0.004482	0	0
ZNF441	126068	broad.mit.edu	37	19	11892195	11892195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:11892195G>A	uc010dyj.2	+	4	1750	c.1556G>A	c.(1555-1557)CGA>CAA	p.R519Q	ZNF441_uc002msn.3_Missense_Mutation_p.R475Q	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	519	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTTCATTTCGAAGACATGAA	0.403													14	18					0	0	0.003163	0	0
ZNF491	126069	broad.mit.edu	37	19	11917700	11917700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:11917700C>T	uc002mso.1	+	3	1217	c.932C>T	c.(931-933)TCC>TTC	p.S311F		NM_152356	NP_689569	Q8N8L2	ZN491_HUMAN	zinc finger protein 491	311	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTCACTTGTTCCACTTCGTTT	0.433													16	8					0	0	0.003163	0	0
FBXW9	84261	broad.mit.edu	37	19	12800063	12800063	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:12800063G>A	uc010dyx.2	-	10	1404	c.1404C>T	c.(1402-1404)GAC>GAT	p.D468D	FBXW9_uc010xmp.1_RNA|uc002mul.1_Silent_p.R107R|FBXW9_uc002mum.1_Silent_p.D448D|FBXW9_uc002mun.1_Silent_p.D285D	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	478	WD 7.						protein binding			ovary(1)	1						CTAGCGACAGGTCTCCAGAGC	0.657													15	10					0	0	0.004990	0	0
CACNA1A	773	broad.mit.edu	37	19	13418658	13418658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:13418658C>T	uc010dze.2	-	15	2163	c.1927G>A	c.(1927-1929)GAT>AAT	p.D643N	CACNA1A_uc010dzc.2_Missense_Mutation_p.D168N|CACNA1A_uc002mwy.3_Missense_Mutation_p.D642N|CACNA1A_uc010xne.1_Missense_Mutation_p.D168N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	643	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GTCCCTTCATCGAAATTAAAC	0.547													20	49					0	0	0.014323	0	0
CYP4F12	66002	broad.mit.edu	37	19	15791299	15791299	+	Silent	SNP	G	A	A	rs141478890		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:15791299G>A	uc002nbl.2	+	5	556	c.495G>A	c.(493-495)ACG>ACA	p.T165T	CYP4F12_uc010xoo.1_Silent_p.T165T|CYP4F12_uc010xop.1_3'UTR	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,									p.T165T(1)		skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCTATATAACGATCTTCAACA	0.493													18	15					0	0	0.012319	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807246	15807246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:15807246G>A	uc002nbl.2	+	12	1382	c.1321G>A	c.(1321-1323)GAC>AAC	p.D441N		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GCAGGTCTACGACCCCTTCCG	0.547													48	38					0	0	0.014410	0	0
OR10H3	26532	broad.mit.edu	37	19	15852646	15852646	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:15852646G>A	uc010xoq.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGTGGCCTGGACCTGGGCTG	0.512													41	24					0	0	0.006230	0	0
EPS15L1	58513	broad.mit.edu	37	19	16496019	16496019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:16496019G>A	uc002ndz.1	-	21	2174	c.2168C>T	c.(2167-2169)CCC>CTC	p.P723L	EPS15L1_uc002ndx.2_Missense_Mutation_p.P723L|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.P613L|EPS15L1_uc010xpf.1_Missense_Mutation_p.P626L|EPS15L1_uc002nea.1_Missense_Mutation_p.P723L|EPS15L1_uc010eah.1_Missense_Mutation_p.P725L	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	723	15 X 3 AA repeats of D-P-F.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						GGTTCCAAAGGGATCTGCAAT	0.527													51	85					0	0	0.014410	0	0
NWD1	284434	broad.mit.edu	37	19	16860716	16860716	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:16860716C>T	uc002neu.3	+	6	1685	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L	NWD1_uc002net.3_Silent_p.L286L|NWD1_uc002nev.3_Silent_p.L215L			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	421	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ATACCCTCCTCCACACTGTCT	0.607													41	68					0	0	0.010771	0	0
NWD1	284434	broad.mit.edu	37	19	16910856	16910856	+	Missense_Mutation	SNP	G	A	A	rs141442968		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:16910856G>A	uc002neu.3	+	17	4041	c.3619G>A	c.(3619-3621)GTG>ATG	p.V1207M	NWD1_uc002net.3_Missense_Mutation_p.V1072M|NWD1_uc002nev.3_Missense_Mutation_p.V1001M			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1207	WD 9.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TAGGTCCCGGGTGCCTGCACC	0.577													20	31					0	0	0.008871	0	0
SIN3B	23309	broad.mit.edu	37	19	16977229	16977229	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:16977229C>T	uc002ney.1	+	13	1778	c.1764C>T	c.(1762-1764)TTC>TTT	p.F588F	SIN3B_uc002nez.1_Silent_p.F556F|SIN3B_uc010xpi.1_Silent_p.F146F	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	588	Interaction with SDS3 and HDAC1 (By similarity).				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						AGCAGGGCTTCAACAAGATCT	0.607													22	35					0	0	0.014323	0	0
F2RL3	9002	broad.mit.edu	37	19	17001318	17001318	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:17001318G>A	uc002nfa.2	+	2	1219	c.1044G>A	c.(1042-1044)AGG>AGA	p.R348R		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	348	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						CCGAGTTCAGGGACAAGGTGC	0.667													6	18					0	0	0.001984	0	0
ATP13A1	57130	broad.mit.edu	37	19	19763426	19763426	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:19763426T>C	uc002nnh.3	-	16	2232	c.2204A>G	c.(2203-2205)GAG>GGG	p.E735G	ATP13A1_uc002nne.2_5'Flank|ATP13A1_uc002nnf.3_Missense_Mutation_p.E103G|ATP13A1_uc002nng.2_Missense_Mutation_p.E617G	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	735	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						ATTCTGGATCTCCCGGATCAC	0.612													4	9					0	0	0.000602	0	0
ZNF90	7643	broad.mit.edu	37	19	20188933	20188933	+	Translation_Start_Site	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:20188933A>T	uc002nor.2	+	1	131	c.-8A>T	c.(-10--6)GAAGC>GATGC		ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_RNA	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90							Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GACCCCCGGAAGCCTAGAAAT	0.592													9	14					0	0	0.008291	0	0
ZNF90	7643	broad.mit.edu	37	19	20215134	20215134	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:20215134G>A	uc002nor.2	+	2	229	c.90G>A	c.(88-90)AGG>AGA	p.R30R	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	30	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATTTATATAGGGATGTGATGT	0.393													34	62					0	0	0.003271	0	0
ZNF486	90649	broad.mit.edu	37	19	20308159	20308159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:20308159G>A	uc002nou.2	+	4	697	c.640G>A	c.(640-642)GAA>AAA	p.E214K		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	214	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAAATGTGAAGAATGTGGCAA	0.373													12	24					0	0	0.001855	0	0
ZNF737	100129842	broad.mit.edu	37	19	20736555	20736555	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:20736555C>T	uc002npa.2	-	2	270	c.90G>A	c.(88-90)AGG>AGA	p.R30R		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	30					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						ACATCACATTCCTATATAAAT	0.393													24	50					0	0	0.003330	0	0
ZNF430	80264	broad.mit.edu	37	19	21239839	21239839	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:21239839T>A	uc002npj.2	+	5	835	c.725T>A	c.(724-726)TTT>TAT	p.F242Y	ZNF430_uc002npk.2_Missense_Mutation_p.F241Y	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	242	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						GGTAAAGTCTTTAACTGGTTC	0.358													17	30					0	0	0.004007	0	0
ZNF257	113835	broad.mit.edu	37	19	22270897	22270897	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22270897G>A	uc010ecx.2	+	4	514	c.345G>A	c.(343-345)AAG>AAA	p.K115K	ZNF257_uc010ecy.2_Silent_p.K83K	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	115					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AATTAAGAAAGGGCTGTAAAA	0.358													23	34					0	0	0.004656	0	0
ZNF676	163223	broad.mit.edu	37	19	22362772	22362772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22362772G>A	uc002nqs.1	-	3	2065	c.1747C>T	c.(1747-1749)CAT>TAT	p.H583Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	583	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCCAGTATGAATTTTCTTA	0.343													12	28					0	0	0.010729	0	0
ZNF676	163223	broad.mit.edu	37	19	22363177	22363177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22363177G>A	uc002nqs.1	-	3	1660	c.1342C>T	c.(1342-1344)CCC>TCC	p.P448S		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	448					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				CATTTGTAGGGTTTCTCTCCA	0.433													30	42					0	0	0.009535	0	0
ZNF676	163223	broad.mit.edu	37	19	22363612	22363612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22363612G>A	uc002nqs.1	-	3	1225	c.907C>T	c.(907-909)CAT>TAT	p.H303Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	303	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTCCAGTATGAATTCTCTTA	0.438													27	53					0	0	0.010818	0	0
ZNF492	57615	broad.mit.edu	37	19	22847931	22847931	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22847931A>C	uc002nqw.3	+	4	1704	c.1460A>C	c.(1459-1461)AAC>ACC	p.N487T		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	487	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				AAAGCCTTTAACAACTCCTCT	0.378													15	26					0	0	0.004007	0	0
ZNF99	7652	broad.mit.edu	37	19	22939275	22939275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22939275G>A	uc010xrh.1	-	7	2896	c.2896C>T	c.(2896-2898)CAT>TAT	p.H966Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTTCCAGTATGAATTATCCTA	0.358													12	13					0	0	0.001855	0	0
ZNF99	7652	broad.mit.edu	37	19	22941052	22941052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22941052C>T	uc010xrh.1	-	5	1386	c.1386G>A	c.(1384-1386)ATG>ATA	p.M462I		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCATAAGGGTTG	0.333													12	22					0	0	0.010729	0	0
ZNF99	7652	broad.mit.edu	37	19	22941862	22941862	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:22941862T>A	uc010xrh.1	-	5	576	c.576A>T	c.(574-576)AAA>AAT	p.K192N		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ATTTATATGGTTTCTTCCCAG	0.358													15	26					0	0	0.003163	0	0
ZNF91	7644	broad.mit.edu	37	19	23542635	23542635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:23542635G>A	uc002nre.2	-	4	3259	c.3146C>T	c.(3145-3147)CCT>CTT	p.P1049L	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.P1017L	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1049						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				ACACTTGTAAGGTTTCTCTCC	0.363													12	38					0	0	0.001855	0	0
ZNF536	9745	broad.mit.edu	37	19	30935403	30935403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:30935403G>A	uc002nsu.1	+	2	1072	c.934G>A	c.(934-936)GAG>AAG	p.E312K	ZNF536_uc010edd.1_Missense_Mutation_p.E312K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	312	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCTTCGCAGGAGGAGGAGCT	0.642													46	77					0	0	0.014410	0	0
ZNF536	9745	broad.mit.edu	37	19	30935917	30935917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:30935917G>A	uc002nsu.1	+	2	1586	c.1448G>A	c.(1447-1449)GGG>GAG	p.G483E	ZNF536_uc010edd.1_Missense_Mutation_p.G483E	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	483					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GTCCCGGAGGGGGACAAGCAC	0.652													24	51					0	0	0.003954	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770483	31770483	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:31770483C>A	uc002nsy.3	-	2	281	c.216G>T	c.(214-216)ATG>ATT	p.M72I		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	72					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					ACTCGCTGTCCATTTCATGGC	0.597													13	19					2.32078e-09	2.55566e-09	0.003163	1	0
SLC7A9	11136	broad.mit.edu	37	19	33355115	33355115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:33355115G>A	uc002ntv.3	-	4	482	c.365C>T	c.(364-366)CCC>CTC	p.P122L	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Missense_Mutation_p.P122L|SLC7A9_uc002ntw.3_5'UTR	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	122	Extracellular (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	GAAGGACGTGGGCTTAATGAC	0.577													17	37					0	0	0.008871	0	0
GPATCH1	55094	broad.mit.edu	37	19	33617589	33617590	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:33617589_33617590CC>TT	uc002nug.1	+	19	3029_3030	c.2715_2716CC>TT	c.(2713-2718)AGCCAG>AGTTAG	p.Q906*	GPATCH1_uc002nuh.1_Nonsense_Mutation_p.Q283*	NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	906						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					GCAGCGACAGCCAGAGTGACGA	0.485											OREG0025410	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	59					0	0	0.004672	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36279052	36279052	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:36279052C>T	uc002obs.1	+	21	3187	c.3102C>T	c.(3100-3102)AGC>AGT	p.S1034S	ARHGAP33_uc002obt.1_Silent_p.S1031S|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Silent_p.S783S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1195					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						ACCCCCGAAGCCGTTCAGATC	0.687													18	35					0	0	0.010504	0	0
PRODH2	58510	broad.mit.edu	37	19	36293158	36293158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:36293158G>A	uc002obx.1	-	10	1379	c.1361C>T	c.(1360-1362)CCT>CTT	p.P454L		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	454					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCCATCCAGAGGAATGCCCAG	0.463													39	79					0	0	0.008740	0	0
WDR62	284403	broad.mit.edu	37	19	36575559	36575559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:36575559C>T	uc002odc.2	+	12	1646	c.1555C>T	c.(1555-1557)CAC>TAC	p.H519Y	WDR62_uc002odd.2_Missense_Mutation_p.H519Y	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	519	WD 7.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TCCCAGGATCCACGAGCTGCA	0.607													32	46					0	0	0.003271	0	0
ZNF568	374900	broad.mit.edu	37	19	37441389	37441389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:37441389C>T	uc002ofc.2	+	7	1849	c.1334C>T	c.(1333-1335)CCC>CTC	p.P445L	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.P369L|ZNF568_uc010efe.2_Missense_Mutation_p.P369L|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCTGAGAAACCCTATGAATGT	0.408													37	52					0	0	0.005524	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643682	37643682	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:37643682C>T	uc002ofo.1	-	5	1350	c.1119G>A	c.(1117-1119)CAG>CAA	p.Q373Q	ZNF585A_uc002ofm.1_Silent_p.Q318Q|ZNF585A_uc002ofn.1_Silent_p.Q318Q	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	373	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGTGAATTCTCTGATGAATAA	0.423													32	54					0	0	0.009535	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677649	37677649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:37677649G>A	uc002ofq.2	-	5	1044	c.790C>T	c.(790-792)CAT>TAT	p.H264Y	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.H78Y	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	264	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCGCCTGTATGGATTTTCTGA	0.423													78	118					0	0	0.014410	0	0
ZNF793	390927	broad.mit.edu	37	19	38028636	38028636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:38028636G>A	uc010efm.2	+	8	1518	c.1076G>A	c.(1075-1077)AGA>AAA	p.R359K	ZNF793_uc010xts.1_Missense_Mutation_p.R359K|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	359	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAACATTGGAGAACTCACACA	0.448													29	42					0	0	0.013726	0	0
ZFP30	22835	broad.mit.edu	37	19	38126146	38126146	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:38126146A>T	uc002ogv.1	-	6	1812	c.1296T>A	c.(1294-1296)CAT>CAA	p.H432Q	ZFP30_uc002ogw.1_Missense_Mutation_p.H432Q|ZFP30_uc002ogx.1_Missense_Mutation_p.H432Q|ZFP30_uc010xtt.1_Missense_Mutation_p.H431Q	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	432	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTCACCAAAATGAATACTCT	0.393													8	43					0	0	0.003080	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38682858	38682859	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:38682858_38682859CC>TT	uc002ohk.2	+	17	5013_5014	c.4504_4505CC>TT	c.(4504-4506)CCA>TTA	p.P1502L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1502					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCTCCGGTCACCACGGAAGAAC	0.554													22	32					0	0	0.004672	0	0
YIF1B	90522	broad.mit.edu	37	19	38799966	38799966	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:38799966G>A	uc002ohz.2	-	3	349	c.300C>T	c.(298-300)ATC>ATT	p.I100I	YIF1B_uc002ohw.2_Silent_p.I69I|YIF1B_uc002ohx.2_Silent_p.I85I|YIF1B_uc010xtx.1_Silent_p.I83I|YIF1B_uc010xty.1_Silent_p.I69I|YIF1B_uc002oia.2_Silent_p.I97I|YIF1B_uc002ohy.2_Silent_p.I97I|YIF1B_uc002oib.2_Silent_p.I97I	NM_001039672	NP_001034761	Q5BJH7	YIF1B_HUMAN	Yip1 interacting factor homolog B isoform 5	100	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TGAAGCGGTCGATCTGGGGAG	0.587													45	83					0	0	0.011902	0	0
CATSPERG	57828	broad.mit.edu	37	19	38852894	38852894	+	Silent	SNP	G	A	A	rs150226178		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:38852894G>A	uc002oih.3	+	18	2226	c.2139G>A	c.(2137-2139)GCG>GCA	p.A713A	CATSPERG_uc002oig.3_Silent_p.A673A|CATSPERG_uc002oif.3_Silent_p.A353A|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	713	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						GCTGGTGGGCGAACAACAAAC	0.716													11	7					0	0	0.010729	0	0
FAM98C	147965	broad.mit.edu	37	19	38893811	38893812	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:38893811_38893812GG>AA	uc002oin.1	+	1	37_38	c.18_19GG>AA	c.(16-21)GCGGAA>GCAAAA	p.E7K	FAM98C_uc002oio.1_Missense_Mutation_p.E7K|FAM98C_uc010xtz.1_Missense_Mutation_p.E7K	NM_174905	NP_777565	Q17RN3	FA98C_HUMAN	hypothetical protein LOC147965	7										skin(1)	1	all_cancers(60;3.95e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CGGTGAAGGCGGAAGCGTGGGA	0.728													10	20					0	0	0.004672	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330888	39330888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:39330888G>A	uc010xul.1	-	8	1092	c.1081C>T	c.(1081-1083)CCC>TCC	p.P361S	HNRNPL_uc010ege.1_Missense_Mutation_p.P17S|HNRNPL_uc002ojj.1_Missense_Mutation_p.P17S|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Missense_Mutation_p.P17S|HNRNPL_uc002ojl.2_Missense_Mutation_p.P17S|HNRNPL_uc010xum.1_Missense_Mutation_p.P228S|HNRNPL_uc002ojp.1_Missense_Mutation_p.P17S|HNRNPL_uc010xun.1_Silent_p.A68A	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	361	Pro-rich.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CCATACTGGGGGCCGTAGCGA	0.642													12	11					0	0	0.013537	0	0
DLL3	10683	broad.mit.edu	37	19	39991276	39991276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:39991276G>A	uc002olx.2	+	3	431	c.373G>A	c.(373-375)GAA>AAA	p.E125K	DLL3_uc010egq.2_Missense_Mutation_p.E125K|DLL3_uc002olw.2_Missense_Mutation_p.E125K	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	125	Extracellular (Potential).				Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TTTCATCATCGAAACCTGGAG	0.537													47	129					0	0	0.014410	0	0
FCGBP	8857	broad.mit.edu	37	19	40395813	40395813	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:40395813C>T	uc002omp.3	-	15	7592	c.7584G>A	c.(7582-7584)TGG>TGA	p.W2528*		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2528	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCGTGACCTTCCACTGTCTCT	0.642													31	145					0	0	0.014410	0	0
FCGBP	8857	broad.mit.edu	37	19	40405985	40405985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:40405985C>T	uc002omp.3	-	10	4869	c.4861G>A	c.(4861-4863)GAA>AAA	p.E1621K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1621	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGCTGTGTTCCTGGCACACC	0.642													13	16					0	0	0.002450	0	0
ZNF780B	163131	broad.mit.edu	37	19	40541451	40541451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:40541451G>A	uc002omu.2	-	5	1380	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y	ZNF780B_uc002omv.2_Missense_Mutation_p.H291Y	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	439	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCATTGGAATGAATTTTTTGA	0.378													54	86					0	0	0.014410	0	0
PRX	57716	broad.mit.edu	37	19	40901190	40901190	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:40901190G>A	uc002onr.2	-	7	3338	c.3069C>T	c.(3067-3069)CTC>CTT	p.L1023L	PRX_uc002onq.2_Silent_p.L884L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1023					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CAAACTTGGGGAGAGCAAACC	0.637													33	52					0	0	0.003755	0	0
LTBP4	8425	broad.mit.edu	37	19	41119848	41119848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:41119848C>T	uc002ooh.1	+	21	2785	c.2785C>T	c.(2785-2787)CTT>TTT	p.L929F	LTBP4_uc002oog.1_Missense_Mutation_p.L892F|LTBP4_uc002ooi.1_Missense_Mutation_p.L862F|LTBP4_uc002ooj.1_5'UTR|LTBP4_uc002ook.1_Missense_Mutation_p.L149F|LTBP4_uc002ool.1_Missense_Mutation_p.L27F|LTBP4_uc002oom.1_RNA|LTBP4_uc010xvp.1_5'Flank	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	929	Cys-rich.|EGF-like 11; calcium-binding (Potential).				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CGAGGAGGACCTTTGCCAGAG	0.677													11	21					0	0	0.008291	0	0
NUMBL	9253	broad.mit.edu	37	19	41188839	41188839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:41188839C>T	uc002oon.2	-	4	452	c.284G>A	c.(283-285)GGA>GAA	p.G95E	NUMBL_uc010xvq.1_Missense_Mutation_p.G54E|NUMBL_uc002ooo.2_Missense_Mutation_p.G95E|NUMBL_uc010xvr.1_Missense_Mutation_p.G54E	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	95	PID.				cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			CACGTGCATTCCCCGGGACTC	0.567													30	44					0	0	0.013726	0	0
CYP2A7	1549	broad.mit.edu	37	19	41383100	41383100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:41383100G>A	uc002opm.2	-	7	1698	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	CYP2A7_uc002opo.2_Missense_Mutation_p.P386S|CYP2A7_uc002opn.2_Missense_Mutation_p.P335S	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	386						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			AGCACCTTAGGGAGGAAAAAA	0.532													31	53					0	0	0.009535	0	0
CYP2A13	1553	broad.mit.edu	37	19	41596460	41596460	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:41596460C>T	uc002opt.2	+	4	654	c.645C>T	c.(643-645)TCC>TCT	p.S215S		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	215					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CGGCAACCTCCACGGGGCAGG	0.597													32	56					0	0	0.009535	0	0
CEACAM7	1087	broad.mit.edu	37	19	42187798	42187798	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:42187798C>T	uc002ori.1	-	3	626	c.624G>A	c.(622-624)AAG>AAA	p.K208K	CEACAM7_uc010ehx.2_Silent_p.K208K|CEACAM7_uc010ehy.1_Intron	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	208	Ig-like C2-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		CTATGTCATTCTTTGTGGCGC	0.537													50	103					0	0	0.014410	0	0
CEACAM6	4680	broad.mit.edu	37	19	42265234	42265234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:42265234G>A	uc002orm.2	+	3	651	c.502G>A	c.(502-504)GAA>AAA	p.E168K		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	168	Ig-like C2-type 1.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CTTCACCTGTGAACCTGAGGT	0.567													98	134					0	0	0.014410	0	0
ZNF574	64763	broad.mit.edu	37	19	42584105	42584105	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:42584105G>A	uc002osm.3	+	2	1516	c.1347G>A	c.(1345-1347)GAG>GAA	p.E449E	ZNF574_uc002osk.3_Silent_p.E539E	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	449	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				AGGCCCCTGAGCCCCCTGTGT	0.647													22	55					0	0	0.014323	0	0
PRR19	284338	broad.mit.edu	37	19	42814694	42814694	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:42814694G>A	uc002oti.2	+	3	1251	c.873G>A	c.(871-873)CTG>CTA	p.L291L	PRR19_uc002oth.1_3'UTR|PRR19_uc002otj.2_Silent_p.L291L|TMEM145_uc002otk.1_5'Flank	NM_199285	NP_954979	A6NJB7	PRR19_HUMAN	proline rich 19	291	Pro-rich.										0		Prostate(69;0.00682)				GCATCTGGCTGGTAGCCACGC	0.617													39	70					0	0	0.007835	0	0
MEGF8	1954	broad.mit.edu	37	19	42880018	42880019	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:42880018_42880019CC>TT	uc002otl.3	+	41	8063_8064	c.7428_7429CC>TT	c.(7426-7431)CCCCGG>CCTTGG	p.R2477W	MEGF8_uc002otm.3_Missense_Mutation_p.R2085W|MEGF8_uc002otn.3_Missense_Mutation_p.R138W	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2544	Extracellular (Potential).|Pro-rich.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				ATGGTGGGCCCCGGGGGGCTGG	0.703													12	10					0	0	0.004672	0	0
PSG6	5675	broad.mit.edu	37	19	43414942	43414942	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:43414942A>G	uc002ovj.1	-	3	548	c.496T>C	c.(496-498)TTA>CTA	p.L166L	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Silent_p.L173L|PSG6_uc002ovi.2_Silent_p.L167L|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Silent_p.L166L|PSG6_uc002ovg.1_Silent_p.L166L	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	166	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TCACAGATTAAGCGCACAGCC	0.532													76	145					0	0	0.014410	0	0
PSG7	5676	broad.mit.edu	37	19	43441217	43441217	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:43441217G>A	uc002ovl.3	-	1	114	c.12C>T	c.(10-12)CTC>CTT	p.L4L	PSG3_uc002ouf.2_5'Flank|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.L4L	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	4					female pregnancy	extracellular region					0		Prostate(69;0.00682)				GAGGGGCTGAGAGGGGCCCCA	0.572													35	71					0	0	0.010771	0	0
ZNF226	7769	broad.mit.edu	37	19	44680638	44680638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:44680638C>T	uc002oyp.2	+	6	1367	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F	ZNF226_uc002oyq.2_Missense_Mutation_p.S291F|ZNF226_uc002oyr.2_Missense_Mutation_p.S291F|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.S408F|ZNF226_uc002oyt.2_Missense_Mutation_p.S408F	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	408	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CATCTTCAATCCCATCAAAGA	0.443													11	36					0	0	0.010729	0	0
ZNF226	7769	broad.mit.edu	37	19	44681340	44681340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:44681340C>T	uc002oyp.2	+	6	2069	c.1925C>T	c.(1924-1926)CCA>CTA	p.P642L	ZNF226_uc002oyq.2_Missense_Mutation_p.P525L|ZNF226_uc002oyr.2_Missense_Mutation_p.P525L|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.P642L|ZNF226_uc002oyt.2_Missense_Mutation_p.P642L	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	642					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				GGAGAAAAACCATTCAAATGT	0.458													29	45					0	0	0.003271	0	0
ZFP112	7771	broad.mit.edu	37	19	44832211	44832211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:44832211G>A	uc010ejj.2	-	5	2230	c.2117C>T	c.(2116-2118)TCA>TTA	p.S706L	ZFP112_uc002ozc.3_Missense_Mutation_p.S700L|ZFP112_uc010xwy.1_Missense_Mutation_p.S723L|ZFP112_uc010xwz.1_Missense_Mutation_p.S705L	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	706	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CTGAAGGTATGATCTCTGACT	0.463													26	52					0	0	0.003954	0	0
ZNF229	7772	broad.mit.edu	37	19	44934400	44934400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:44934400C>T	uc002oze.1	-	6	990	c.556G>A	c.(556-558)GGA>AGA	p.G186R	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.G180R	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GCCCAAGATCCTTGAATGGGG	0.423													33	51					0	0	0.010818	0	0
CLPTM1	1209	broad.mit.edu	37	19	45490560	45490560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:45490560C>T	uc002pai.2	+	8	932	c.917C>T	c.(916-918)TCC>TTC	p.S306F	CLPTM1_uc010ejv.1_Missense_Mutation_p.S204F|CLPTM1_uc010xxf.1_Missense_Mutation_p.S204F|CLPTM1_uc010xxg.1_Missense_Mutation_p.S292F	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	306	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CTCCGCGTCTCCTTCTGCCCA	0.567													69	333					0	0	0.014410	0	0
FOSB	2354	broad.mit.edu	37	19	45975997	45975997	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:45975997G>A	uc002pbx.3	+	4	1336	c.744G>A	c.(742-744)AAG>AAA	p.K248K	ERCC1_uc002pbu.1_Intron|FOSB_uc010eke.2_Silent_p.K173K|FOSB_uc002pby.3_Silent_p.K212K|FOSB_uc010eka.1_Intron|FOSB_uc010ekb.1_Intron|FOSB_uc010ekc.1_Intron|FOSB_uc010ekf.2_Silent_p.K209K|FOSB_uc010ekd.1_Intron|FOSB_uc010ekg.2_Silent_p.K105K|FOSB_uc002pca.3_Silent_p.K199K	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	248					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		CACCGGCTAAGGAAGATGGCT	0.677													12	30					0	0	0.010729	0	0
GPR4	2828	broad.mit.edu	37	19	46094627	46094627	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:46094627G>A	uc002pcm.2	-	2	1443	c.498C>T	c.(496-498)ACC>ACT	p.T166T	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	166	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		CAAAGCAGAAGGTGTGGTTGT	0.637													39	91					0	0	0.013114	0	0
DMPK	1760	broad.mit.edu	37	19	46280937	46280937	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:46280937G>A	uc002pdd.1	-	6	1444	c.900C>T	c.(898-900)ATC>ATT	p.I300I	DMPK_uc010xxs.1_Silent_p.I201I|DMPK_uc002pde.1_Silent_p.I300I|DMPK_uc002pdf.1_Silent_p.I290I|DMPK_uc002pdg.1_Silent_p.I290I|DMPK_uc002pdh.1_Silent_p.I290I|DMPK_uc002pdi.1_Silent_p.I316I|DMPK_uc010xxt.1_Silent_p.I290I	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	300	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		TGTAGTGGACGATCTTGCCAT	0.617													58	99					0	0	0.014410	0	0
PNMAL1	55228	broad.mit.edu	37	19	46974164	46974164	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:46974164C>A	uc002peq.3	-	2	435	c.129G>T	c.(127-129)TTG>TTT	p.L43F	PNMAL1_uc002per.3_Missense_Mutation_p.L43F	NM_018215	NP_060685	Q86V59	PNML1_HUMAN	PNMA-like 1 isoform a	43											0		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000166)|all cancers(93;0.0014)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		ggaccccattcaaggtctcct	0													27	45					3.01185e-09	3.31359e-09	0.003954	1	0
AP2S1	1175	broad.mit.edu	37	19	47342728	47342728	+	Silent	SNP	G	A	A	rs151335841	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:47342728G>A	uc002pft.1	-	3	441	c.261C>T	c.(259-261)TTC>TTT	p.F87F	AP2S1_uc002pfu.1_Intron	NM_004069	NP_004060	P53680	AP2S1_HUMAN	adaptor-related protein complex 2, sigma 1	87					axon guidance|clathrin coat assembly|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|regulation of endocytosis|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	protein transporter activity				0		all_cancers(25;1.24e-06)|all_epithelial(76;1.09e-05)|all_lung(116;0.00019)|Lung NSC(112;0.000601)|Ovarian(192;0.0221)|all_neural(266;0.0459)|Breast(70;0.128)		OV - Ovarian serous cystadenocarcinoma(262;3.86e-05)|all cancers(93;0.000107)|Epithelial(262;0.00325)|GBM - Glioblastoma multiforme(486;0.0336)		GTACCTCCACGAAGTTGTGAA	0.592													53	95					0	0	0.014410	0	0
FAM83E	54854	broad.mit.edu	37	19	49104393	49104393	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:49104393G>A	uc002pjn.2	-	5	1475	c.1410C>T	c.(1408-1410)CCC>CCT	p.P470P		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	470										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GTCCTGCCCGGGGGGCCCAGT	0.647													12	43					0	0	0.013537	0	0
SPHK2	56848	broad.mit.edu	37	19	49129253	49129253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:49129253C>T	uc002pjr.2	+	3	511	c.145C>T	c.(145-147)CCG>TCG	p.P49S	SPHK2_uc010xzt.1_Intron|SPHK2_uc002pjs.2_Missense_Mutation_p.P49S|SPHK2_uc002pjt.2_Intron|SPHK2_uc002pju.2_Missense_Mutation_p.P13S|SPHK2_uc002pjv.2_Missense_Mutation_p.P13S|SPHK2_uc002pjw.2_Missense_Mutation_p.P111S|SPHK2_uc010xzu.1_Missense_Mutation_p.P13S	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	49	Required for binding to sulfatide and phosphoinositides and for membrane localization.			P -> S (in Ref. 2; CAB66636).	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		TGCCAGCACCCCGCTCCTCCA	0.697													19	25					0	0	0.006122	0	0
HSD17B14	51171	broad.mit.edu	37	19	49334994	49334994	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:49334994C>T	uc002pkv.1	-	5	566	c.300G>A	c.(298-300)GAG>GAA	p.E100E	HSD17B14_uc010emk.1_Silent_p.E100E	NM_016246	NP_057330	Q9BPX1	DHB14_HUMAN	dehydrogenase/reductase (SDR family) member 10	100					steroid catabolic process	centrosome|cytosol	estradiol 17-beta-dehydrogenase activity|protein binding|testosterone 17-beta-dehydrogenase (NADP+) activity				0		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000341)|all cancers(93;0.000764)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.0346)		CAGAGGTCTCCTCAGGCCTCT	0.517													36	46					0	0	0.006230	0	0
HSD17B14	51171	broad.mit.edu	37	19	49337584	49337584	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:49337584G>A	uc002pkv.1	-	3	425	c.159C>T	c.(157-159)CTC>CTT	p.L53L	HSD17B14_uc010emk.1_Silent_p.L53L	NM_016246	NP_057330	Q9BPX1	DHB14_HUMAN	dehydrogenase/reductase (SDR family) member 10	53					steroid catabolic process	centrosome|cytosol	estradiol 17-beta-dehydrogenase activity|protein binding|testosterone 17-beta-dehydrogenase (NADP+) activity				0		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000341)|all cancers(93;0.000764)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.0346)		CAGCTCCAGGGAGCTCCTGCT	0.294													37	72					0	0	0.003755	0	0
SNRNP70	6625	broad.mit.edu	37	19	49611065	49611065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:49611065C>T	uc002pmk.2	+	10	1118	c.679C>T	c.(679-681)CCG>TCG	p.P227S	SNRNP70_uc002pmh.1_Intron|SNRNP70_uc002pmi.1_Intron|SNRNP70_uc002pml.2_Silent_p.P13P|SNRNP70_uc002pmm.2_RNA	NM_003089	NP_003080	P08621	RU17_HUMAN	U1 small nuclear ribonucleoprotein 70 kDa	227					nuclear mRNA splicing, via spliceosome|regulation of RNA splicing	nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						CGGCCCCTCCCCGCTTCCGCA	0.731													4	9					0	0	0.000602	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169104	50169104	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:50169104C>T	uc002ppa.2	+	1	706	c.24C>T	c.(22-24)TTC>TTT	p.F8F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'UTR|IRF3_uc002pox.1_5'UTR|IRF3_uc002poy.1_5'UTR|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'UTR|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F8F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	8					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CTGGGCTGTTCCCGCCCCTAT	0.542													39	63					0	0	0.013114	0	0
MYBPC2	4606	broad.mit.edu	37	19	50961874	50961874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:50961874C>T	uc002psf.2	+	21	2420	c.2369C>T	c.(2368-2370)CCC>CTC	p.P790L		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	790	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		AACACCGAGCCCGTGGAGCGC	0.667													7	22					0	0	0.006214	0	0
SYT3	84258	broad.mit.edu	37	19	51129204	51129204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:51129204G>A	uc002pst.2	-	5	1986	c.1352C>T	c.(1351-1353)ACC>ATC	p.T451I	SYT3_uc002psv.2_Missense_Mutation_p.T451I|SYT3_uc010ycd.1_Missense_Mutation_p.T451I	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	451	C2 2.|Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		TTTGATGATGGTCACGGTGAG	0.438													7	36					0	0	0.003080	0	0
SHANK1	50944	broad.mit.edu	37	19	51170630	51170630	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:51170630G>A	uc002psx.1	-	22	4606	c.4587C>T	c.(4585-4587)CCC>CCT	p.P1529P	SHANK1_uc002psw.1_Silent_p.P913P	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1529					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		AGGTCGGGGAGGGGGGCACGG	0.736													7	14					0	0	0.003080	0	0
SHANK1	50944	broad.mit.edu	37	19	51219589	51219589	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:51219589C>T	uc002psx.1	-	2	421	c.402G>A	c.(400-402)GAG>GAA	p.E134E		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	134					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GCAGCCTCTCCTCCTCCAGGA	0.612													19	65					0	0	0.006122	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51995005	51995005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:51995005C>T	uc002pwx.1	-	8	1734	c.1678G>A	c.(1678-1680)GAA>AAA	p.E560K	SIGLEC12_uc002pww.1_Missense_Mutation_p.E442K|SIGLEC12_uc010eoy.1_Missense_Mutation_p.E287K	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	560	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		ATCTCTCCTTCCTCTGGGGAG	0.592													32	64					0	0	0.012213	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52001350	52001350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52001350C>T	uc002pwx.1	-	5	1383	c.1327G>A	c.(1327-1329)GAA>AAA	p.E443K	SIGLEC12_uc002pww.1_Missense_Mutation_p.E325K|SIGLEC12_uc010eoy.1_Missense_Mutation_p.E170K	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	443	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CAGGTGAATTCCCCTTCATCC	0.612													15	35					0	0	0.004007	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033111	52033111	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52033111C>T	uc002pwy.2	-	5	1041	c.879G>A	c.(877-879)CTG>CTA	p.L293L	SIGLEC6_uc002pwz.2_Silent_p.L277L|SIGLEC6_uc002pxa.2_Silent_p.L293L|SIGLEC6_uc010ydb.1_Silent_p.L230L|SIGLEC6_uc010ydc.1_Silent_p.L293L|SIGLEC6_uc010eoz.1_Silent_p.L271L|SIGLEC6_uc010epb.1_Silent_p.L246L|SIGLEC6_uc010epa.1_Silent_p.L282L	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	293	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GGGTGGCGTTCAGGGCGGGGA	0.642													30	79					0	0	0.003271	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033208	52033208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52033208G>A	uc002pwy.2	-	5	944	c.782C>T	c.(781-783)TCC>TTC	p.S261F	SIGLEC6_uc002pwz.2_Missense_Mutation_p.S245F|SIGLEC6_uc002pxa.2_Missense_Mutation_p.S261F|SIGLEC6_uc010ydb.1_Missense_Mutation_p.S198F|SIGLEC6_uc010ydc.1_Missense_Mutation_p.S261F|SIGLEC6_uc010eoz.1_Missense_Mutation_p.S239F|SIGLEC6_uc010epb.1_Missense_Mutation_p.S214F|SIGLEC6_uc010epa.1_Missense_Mutation_p.S250F	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	261	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GACAGGGAGGGACGAGGTGTT	0.602													65	66					0	0	0.014410	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034562	52034562	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52034562G>A	uc002pwy.2	-	2	441	c.279C>T	c.(277-279)TTC>TTT	p.F93F	SIGLEC6_uc002pwz.2_Silent_p.F93F|SIGLEC6_uc002pxa.2_Silent_p.F93F|SIGLEC6_uc010ydb.1_Silent_p.F46F|SIGLEC6_uc010ydc.1_Silent_p.F82F|SIGLEC6_uc010eoz.1_Silent_p.F82F|SIGLEC6_uc010epb.1_Silent_p.F46F|SIGLEC6_uc010epa.1_Silent_p.F82F	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	93	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		AGAGGAGGTGGAATCGGCCCC	0.552													29	53					0	0	0.007291	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147170	52147170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52147170C>T	uc002pxf.3	-	5	994	c.874G>A	c.(874-876)GCC>ACC	p.A292T		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	292	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GGATTGAGGGCTTTTCCCTCC	0.607													25	46					0	0	0.005443	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52149074	52149074	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52149074G>A	uc002pxf.3	-	3	781	c.661C>T	c.(661-663)CAG>TAG	p.Q221*		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	221	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GTGGTCACCTGAGCTCCTTGG	0.622													19	44					0	0	0.003954	0	0
ZNF577	84765	broad.mit.edu	37	19	52376906	52376906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52376906C>T	uc010yde.1	-	7	728	c.337G>A	c.(337-339)GGA>AGA	p.G113R	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Intron|ZNF577_uc002pxv.2_Missense_Mutation_p.G106R|ZNF577_uc002pxw.2_Intron	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	113					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CTCCCATATCCACCAAATGCA	0.383													19	43					0	0	0.007413	0	0
ZNF836	162962	broad.mit.edu	37	19	52660188	52660188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52660188C>T	uc010ydi.1	-	5	1122	c.748G>A	c.(748-750)GAA>AAA	p.E250K	ZNF836_uc010ydj.1_Missense_Mutation_p.E250K	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	250	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTGCCACATTCATTGCATTTG	0.408													24	40					0	0	0.004656	0	0
ZNF880	400713	broad.mit.edu	37	19	52887533	52887533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:52887533C>T	uc002pzc.2	+	4	749	c.700C>T	c.(700-702)CAT>TAT	p.H234Y		NM_001145434	NP_001138906	Q6PDB4	ZN880_HUMAN	zinc finger protein LOC400713	234	C2H2-type 2.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						TCAAAGAATTCATACTGGAGA	0.388													8	11					0	0	0.006214	0	0
ZNF600	162966	broad.mit.edu	37	19	53269038	53269038	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:53269038C>T	uc002qab.3	-	3	2257	c.1971G>A	c.(1969-1971)AGG>AGA	p.R657R		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	657	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		GATGAATTCTCCTATGTCTTT	0.378													39	64					0	0	0.006230	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473843	53473843	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:53473843C>T	uc002qan.3	-	4		c.658G>A				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						AGGTTTGTTTCCAGCATGCCT	0.383													42	66					0	0	0.014410	0	0
VN1R2	317701	broad.mit.edu	37	19	53762278	53762278	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:53762278G>A	uc002qbi.2	+	1	734	c.650G>A	c.(649-651)TGG>TAG	p.W217*		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	217	Helical; Name=4; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		ATCCTGTGCTGGGCCTTCCAC	0.443													18	31					0	0	0.006122	0	0
ZNF761	388561	broad.mit.edu	37	19	53958194	53958194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:53958194C>T	uc010eqp.2	+	7	891	c.433C>T	c.(433-435)CAT>TAT	p.H145Y	ZNF761_uc010ydy.1_Missense_Mutation_p.H91Y|ZNF761_uc002qbt.1_Missense_Mutation_p.H91Y	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		ATCAAGCTTTCATTCGCATCT	0.388													41	65					0	0	0.008740	0	0
DPRX	503834	broad.mit.edu	37	19	54137909	54137909	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:54137909G>A	uc002qcf.1	+	2	204	c.153G>A	c.(151-153)TCG>TCA	p.S51S		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	51	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		AAATGGCCTCGAAAATAGACA	0.433													15	59					0	0	0.003163	0	0
MIR517B	574483	broad.mit.edu	37	19	54224381	54224381	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:54224381C>T	hsa-mir-517b|MI0003165	+			c.52C>T			MIR520G_hsa-mir-520g|MI0003166_5'Flank																	0						GATCGTGCATCCCTTTAGAGT	0.408													36	85					0	0	0.004878	0	0
VSTM1	284415	broad.mit.edu	37	19	54561757	54561757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:54561757G>A	uc002qcw.3	-	3	334	c.158C>T	c.(157-159)TCC>TTC	p.S53F	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Missense_Mutation_p.S53F	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	53	Ig-like V-type.					integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		CACATTCTGGGAATGAGCCTG	0.557													27	124					0	0	0.007291	0	0
LILRA3	11026	broad.mit.edu	37	19	54802206	54802206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:54802206G>A	uc002qfd.2	-	6	1047	c.982C>T	c.(982-984)CTC>TTC	p.L328F	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.L264F	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	328	Ig-like C2-type 4.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CGCACGGAGAGGAAGGGTCTG	0.632													8	35					0	0	0.003080	0	0
LILRA1	11024	broad.mit.edu	37	19	55105938	55105938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55105938G>A	uc002qgh.1	+	3	249	c.67G>A	c.(67-69)GCA>ACA	p.A23T	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.A23T	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	23	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CCACGTGCAGGCAGGTGAGTC	0.652													26	65					0	0	0.010818	0	0
LILRB1	10859	broad.mit.edu	37	19	55143453	55143453	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55143453C>T	uc002qgj.2	+	6	766	c.426C>T	c.(424-426)ATC>ATT	p.I142I	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.I142I|LILRB1_uc002qgk.2_Silent_p.I142I|LILRB1_uc002qgm.2_Silent_p.I142I|LILRB1_uc010erq.2_Silent_p.I142I|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	142	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GGAATGTAATCCTCCAGTGTG	0.552										HNSCC(37;0.09)			19	38					0	0	0.007413	0	0
LILRB1	10859	broad.mit.edu	37	19	55146718	55146718	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55146718C>A	uc002qgj.2	+	13	1908	c.1568C>A	c.(1567-1569)CCA>CAA	p.P523Q	LILRB1_uc010erp.1_Missense_Mutation_p.P138Q|LILRB1_uc002qgl.2_Missense_Mutation_p.P523Q|LILRB1_uc002qgk.2_Missense_Mutation_p.P524Q|LILRB1_uc002qgm.2_Missense_Mutation_p.P524Q|LILRB1_uc010erq.2_Missense_Mutation_p.P507Q|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	523	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGGTCCAGCCCAGCTGCCGAT	0.602										HNSCC(37;0.09)			38	68					2.37825e-27	2.63929e-27	0.010771	1	0
LILRB1	10859	broad.mit.edu	37	19	55147037	55147037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55147037G>A	uc002qgj.2	+	14	1967	c.1627G>A	c.(1627-1629)GAT>AAT	p.D543N	LILRB1_uc010erp.1_Missense_Mutation_p.D158N|LILRB1_uc002qgl.2_Missense_Mutation_p.D543N|LILRB1_uc002qgk.2_Missense_Mutation_p.D544N|LILRB1_uc002qgm.2_Missense_Mutation_p.D544N|LILRB1_uc010erq.2_Missense_Mutation_p.D527N|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	543	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		ACAGCCTGAGGATGGGGTGGA	0.612										HNSCC(37;0.09)			59	77					0	0	0.014410	0	0
LILRB4	11006	broad.mit.edu	37	19	55176615	55176615	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55176615G>A	uc002qgp.2	+	6	1103	c.741G>A	c.(739-741)GGG>GGA	p.G247G	LILRB4_uc002qgq.2_Silent_p.G247G|LILRB4_uc010ers.1_3'UTR|LILRB4_uc002qgr.2_Silent_p.G288G|LILRB4_uc010ert.2_Silent_p.G288G|LILRB4_uc010eru.2_Silent_p.G276G	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	247	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TGCCTACAGGGTCAGTCCCCC	0.403													12	24					0	0	0.002450	0	0
LILRP2	79166	broad.mit.edu	37	19	55220652	55220652	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55220652C>T	uc002qgs.1	+	1		c.1052C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CAGCGAGCCCCTGGAGCTGGT	0.592													9	16					0	0	0.010729	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55285022	55285022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55285022C>T	uc002qhb.1	+	3	346	c.308C>T	c.(307-309)TCT>TTT	p.S103F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.S103F	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	103	Extracellular (Potential).|Ig-like C2-type 1.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TGCTACGGTTCTGTTACTCAC	0.527													110	43					0	0	0.014410	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55290064	55290064	+	Missense_Mutation	SNP	G	A	A	rs113536578		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55290064G>A	uc002qhb.1	+	5	703	c.665G>A	c.(664-666)GGA>GAA	p.G222E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G222E	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	222	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CATGTTCTAGGAAACCCTTCA	0.493													46	31					0	0	0.014410	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55331457	55331457	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55331457C>T	uc002qhk.3	+	4	708	c.645C>T	c.(643-645)ATC>ATT	p.I215I	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.I157I|KIR3DL1_uc010esf.2_Silent_p.I120I|KIR3DL1_uc010yfo.1_Silent_p.I157I|KIR3DL1_uc002qhl.3_Silent_p.I215I	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	215	Extracellular (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CCCTGGACATCGTGGTCACAG	0.527													44	24					0	0	0.014410	0	0
NLRP7	199713	broad.mit.edu	37	19	55447713	55447713	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55447713G>T	uc002qih.3	-	6	2292	c.2216C>A	c.(2215-2217)GCA>GAA	p.A739E	NLRP7_uc002qig.3_Missense_Mutation_p.A711E|NLRP7_uc002qii.3_Missense_Mutation_p.A739E|NLRP7_uc010esk.2_Missense_Mutation_p.A739E|NLRP7_uc010esl.2_Missense_Mutation_p.A767E	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	739							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GATGTGCCCTGCCAGGGTCAG	0.537													33	43					6.00712e-18	6.65614e-18	0.012213	1	0
NLRP7	199713	broad.mit.edu	37	19	55451638	55451638	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55451638C>T	uc002qih.3	-	4	625	c.549G>A	c.(547-549)GGG>GGA	p.G183G	NLRP7_uc002qig.3_Silent_p.G183G|NLRP7_uc002qii.3_Silent_p.G183G|NLRP7_uc010esk.2_Silent_p.G183G|NLRP7_uc010esl.2_Silent_p.G211G	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	183	NACHT.|ATP (Potential).						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GCGTGGTTTTCCCCACGCCTG	0.562													37	61					0	0	0.003271	0	0
ISOC2	79763	broad.mit.edu	37	19	55967752	55967752	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:55967752G>A	uc002qlb.2	-	2	276	c.102C>T	c.(100-102)TTC>TTT	p.F34F	ISOC2_uc002qla.2_Silent_p.F34F|ISOC2_uc002qlc.2_Silent_p.F34F	NM_001136201	NP_001129673	Q96AB3	ISOC2_HUMAN	isochorismatase domain containing 2 isoform 1	34					protein destabilization	mitochondrion|nucleus	catalytic activity|protein binding			ovary(1)	1	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0535)		CGATCTGTGGGAAGTAGGCGA	0.433													15	76					0	0	0.007413	0	0
ZNF524	147807	broad.mit.edu	37	19	56113487	56113487	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56113487C>T	uc002qlk.1	+	2	92	c.9C>T	c.(7-9)ACC>ACT	p.T3T	FIZ1_uc002qli.3_5'Flank|FIZ1_uc002qlj.3_5'Flank	NM_153219	NP_694951	Q96C55	ZN524_HUMAN	zinc finger protein 524	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CAATGGACACCCCCAGCCCAG	0.652													34	50					0	0	0.008740	0	0
NLRP11	204801	broad.mit.edu	37	19	56303782	56303782	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56303782G>A	uc010ygf.1	-	9	3109	c.2398C>T	c.(2398-2400)CTG>TTG	p.L800L	NLRP11_uc002qlz.2_Silent_p.L647L|NLRP11_uc002qmb.2_Silent_p.L701L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	800							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GGGCTGAACAGAAGCACTCTT	0.478													39	64					0	0	0.005524	0	0
NLRP11	204801	broad.mit.edu	37	19	56321348	56321348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56321348C>T	uc010ygf.1	-	5	1339	c.628G>A	c.(628-630)GGC>AGC	p.G210S	NLRP11_uc002qlz.2_Missense_Mutation_p.G111S|NLRP11_uc002qmb.2_Missense_Mutation_p.G111S|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	210	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GGAGCCTGGCCGTCAGGCCAG	0.488													22	42					0	0	0.002780	0	0
NLRP13	126204	broad.mit.edu	37	19	56424493	56424493	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56424493C>T	uc010ygg.1	-	5	715	c.690G>A	c.(688-690)ACG>ACA	p.T230T		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	230	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCAAGACTATCGTCTGGGCCT	0.522													58	115					0	0	0.014410	0	0
NLRP8	126205	broad.mit.edu	37	19	56463966	56463966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56463966G>A	uc002qmh.2	+	2	501	c.430G>A	c.(430-432)GAA>AAA	p.E144K	NLRP8_uc010etg.2_Missense_Mutation_p.E144K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	144						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GAATCTGGAGGAAGGAGAATC	0.483													27	72					0	0	0.010818	0	0
NLRP8	126205	broad.mit.edu	37	19	56467267	56467267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56467267G>A	uc002qmh.2	+	3	1914	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	NLRP8_uc010etg.2_Missense_Mutation_p.E615K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	615						cytoplasm	ATP binding	p.E615K(1)		ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CTGTCTGCATGAAATCCGGGA	0.443													16	39					0	0	0.004990	0	0
NLRP8	126205	broad.mit.edu	37	19	56490764	56490764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56490764G>A	uc002qmh.2	+	9	2952	c.2881G>A	c.(2881-2883)GAA>AAA	p.E961K	NLRP8_uc010etg.2_Missense_Mutation_p.E942K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	961						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCACAGGCTGGAAAACTGCCT	0.512													42	63					0	0	0.011902	0	0
NLRP5	126206	broad.mit.edu	37	19	56539218	56539218	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56539218G>A	uc002qmj.2	+	7	1619	c.1619G>A	c.(1618-1620)TGG>TAG	p.W540*	NLRP5_uc002qmi.2_Nonsense_Mutation_p.W521*	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	540	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GAGGGAGTGTGGAATAGGAAG	0.552													9	19					0	0	0.006214	0	0
NLRP5	126206	broad.mit.edu	37	19	56539295	56539295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56539295C>T	uc002qmj.2	+	7	1696	c.1696C>T	c.(1696-1698)CAC>TAC	p.H566Y	NLRP5_uc002qmi.2_Missense_Mutation_p.H547Y	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	566	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TGCTCTGTTTCACATGAACAT	0.532													8	28					0	0	0.004482	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701654	56701654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56701654G>A	uc010ygh.1	-	4	1030	c.1030C>T	c.(1030-1032)CCA>TCA	p.P344S		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	344					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGGCCATCTGGGTGACTGACC	0.547													50	73					0	0	0.014410	0	0
ZNF582	147948	broad.mit.edu	37	19	56895388	56895388	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56895388G>A	uc002qmz.1	-	5	1557	c.1398C>T	c.(1396-1398)ACC>ACT	p.T466T	ZNF582_uc002qmy.2_Silent_p.T497T	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	466					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		GAGGTTGAACGGTAGTTGAAT	0.363													47	86					0	0	0.014410	0	0
ZNF582	147948	broad.mit.edu	37	19	56896278	56896278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56896278G>A	uc002qmz.1	-	5	667	c.508C>T	c.(508-510)CCT>TCT	p.P170S	ZNF582_uc002qmy.2_Missense_Mutation_p.P201S	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		TACCCAAAAGGTTTTTCTCTA	0.333													22	54					0	0	0.012319	0	0
ZNF582	147948	broad.mit.edu	37	19	56896388	56896388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56896388C>T	uc002qmz.1	-	5	557	c.398G>A	c.(397-399)GGA>GAA	p.G133E	ZNF582_uc002qmy.2_Missense_Mutation_p.G164E	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		GTCTGGATTTCCCTGTTGTCT	0.403													42	76					0	0	0.008740	0	0
ZNF667	63934	broad.mit.edu	37	19	56953341	56953341	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:56953341C>T	uc002qnd.2	-	5	1185	c.1023G>A	c.(1021-1023)AGG>AGA	p.R341R	ZNF667_uc010etl.2_Silent_p.R123R|ZNF667_uc002qne.2_Silent_p.R341R|ZNF667_uc010etm.2_Silent_p.R284R	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	341	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GGGGTGAAATCCTATTAAATA	0.393													40	54					0	0	0.007835	0	0
ZNF471	57573	broad.mit.edu	37	19	57029918	57029918	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57029918G>A	uc002qnh.2	+	4	361	c.228G>A	c.(226-228)ACG>ACA	p.T76T		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		GGGAGATGACGAGTGAGATGA	0.418													15	26					0	0	0.006122	0	0
ZNF71	58491	broad.mit.edu	37	19	57133999	57133999	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57133999C>T	uc002qnm.3	+	3	1582	c.1344C>T	c.(1342-1344)ATC>ATT	p.I448I		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	448	C2H2-type 12.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		AGTCCTTCATCAAGAACTCCT	0.637													17	25					0	0	0.004990	0	0
ZIM2	23619	broad.mit.edu	37	19	57286126	57286126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57286126C>T	uc002qnr.2	-	11	1896	c.1514G>A	c.(1513-1515)CGA>CAA	p.R505Q	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.R301Q|ZIM2_uc010ygr.1_Missense_Mutation_p.R301Q|ZIM2_uc002qnq.2_Missense_Mutation_p.R505Q|ZIM2_uc010etp.2_Missense_Mutation_p.R505Q|ZIM2_uc010ygs.1_Missense_Mutation_p.R505Q	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	505	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.R505*(1)		ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		GTATGAGGGTCGGCCGAAACA	0.438													20	44					0	0	0.008871	0	0
ZIM2	23619	broad.mit.edu	37	19	57286131	57286131	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57286131G>A	uc002qnr.2	-	11	1891	c.1509C>T	c.(1507-1509)TTC>TTT	p.F503F	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Silent_p.F299F|ZIM2_uc010ygr.1_Silent_p.F299F|ZIM2_uc002qnq.2_Silent_p.F503F|ZIM2_uc010etp.2_Silent_p.F503F|ZIM2_uc010ygs.1_Silent_p.F503F	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	503	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		AGGGTCGGCCGAAACATTTCC	0.443													24	40					0	0	0.003330	0	0
ZIM2	23619	broad.mit.edu	37	19	57286165	57286165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57286165C>T	uc002qnr.2	-	11	1857	c.1475G>A	c.(1474-1476)AGG>AAG	p.R492K	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.R288K|ZIM2_uc010ygr.1_Missense_Mutation_p.R288K|ZIM2_uc002qnq.2_Missense_Mutation_p.R492K|ZIM2_uc010etp.2_Missense_Mutation_p.R492K|ZIM2_uc010ygs.1_Missense_Mutation_p.R492K	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	492					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CTGGTAAGGCCTCTCTTGAGT	0.463													11	43					0	0	0.010729	0	0
PEG3	5178	broad.mit.edu	37	19	57326059	57326059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57326059C>T	uc002qnu.2	-	7	4102	c.3751G>A	c.(3751-3753)GAT>AAT	p.D1251N	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.D1222N|PEG3_uc002qnv.2_Missense_Mutation_p.D1251N|PEG3_uc002qnw.2_Missense_Mutation_p.D1127N|PEG3_uc002qnx.2_Missense_Mutation_p.D1125N|PEG3_uc010etr.2_Missense_Mutation_p.D1251N	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1251					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCCAGTAAATCATCTTCCCTA	0.483													9	28					0	0	0.004482	0	0
PEG3	5178	broad.mit.edu	37	19	57327369	57327369	+	Missense_Mutation	SNP	T	C	C	rs147407205		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57327369T>C	uc002qnu.2	-	7	2792	c.2441A>G	c.(2440-2442)AAC>AGC	p.N814S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.N785S|PEG3_uc002qnv.2_Missense_Mutation_p.N814S|PEG3_uc002qnw.2_Missense_Mutation_p.N690S|PEG3_uc002qnx.2_Missense_Mutation_p.N688S|PEG3_uc010etr.2_Missense_Mutation_p.N814S	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	814					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTCTGATGGTTGATAGCATC	0.478													55	84					0	0	0.014410	0	0
USP29	57663	broad.mit.edu	37	19	57642699	57642699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57642699G>A	uc002qny.2	+	4	3012	c.2656G>A	c.(2656-2658)GGG>AGG	p.G886R		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	886					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CATGCACAATGGGATTTTTGA	0.463													21	43					0	0	0.008871	0	0
DUXA	503835	broad.mit.edu	37	19	57666724	57666724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57666724C>T	uc002qoa.1	-	5	500	c.455G>A	c.(454-456)CGA>CAA	p.R152Q		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	152	Homeobox 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		TCTAGATCTTCGATTTTGGAA	0.378													21	34					0	0	0.003330	0	0
AURKC	6795	broad.mit.edu	37	19	57743452	57743452	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:57743452G>A	uc002qoe.2	+	3	345	c.156G>A	c.(154-156)GGG>GGA	p.G52G	AURKC_uc002qoc.2_Silent_p.G33G|AURKC_uc002qod.2_Silent_p.G18G|AURKC_uc010etv.2_Silent_p.G49G	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	52	ATP (By similarity).|Protein kinase.		G -> E (in a lung adenocarcinoma sample; somatic mutation).		cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		TGGGCAAGGGGAAATTTGGGA	0.547													16	43					0	0	0.006122	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189903	58189903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:58189903C>T	uc002qpu.2	+	5	1629	c.932C>T	c.(931-933)TCA>TTA	p.S311L		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	311					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTCCAAAAATCATACAAATGT	0.473													21	38					0	0	0.014323	0	0
ZNF154	7710	broad.mit.edu	37	19	58216322	58216322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:58216322G>A	uc010euf.2	-	2	299	c.59C>T	c.(58-60)GCC>GTC	p.A20V	ZNF776_uc002qpx.2_Intron|ZNF154_uc002qpy.2_RNA	NM_001085384	NP_001078853	Q13106	ZN154_HUMAN	zinc finger protein 154	20	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GAAGTGTACGGCCACATCTTC	0.512													42	87					0	0	0.014410	0	0
ZNF418	147686	broad.mit.edu	37	19	58438246	58438246	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:58438246A>C	uc002qqs.1	-	4	1595	c.1303T>G	c.(1303-1305)TTT>GTT	p.F435V	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.F350V	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	435	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		TTTCGACTAAAAGATTTCCCA	0.463													60	113					0	0	0.014410	0	0
ZNF497	162968	broad.mit.edu	37	19	58867538	58867538	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr19:58867538G>A	uc002qsh.1	-	3	1653	c.1464C>T	c.(1462-1464)CAC>CAT	p.H488H	A1BG_uc002qsd.3_5'Flank|A1BG_uc002qsf.1_Intron|ZNF497_uc002qsi.1_Silent_p.H488H|uc002qsj.1_5'Flank|uc002qsk.1_5'Flank	NM_198458	NP_940860	Q6ZNH5	ZN497_HUMAN	zinc finger protein 497	488	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0278)		GCCGCTTCTGGTGCTCGTTGA	0.706													7	22					0	0	0.006214	0	0
MYT1L	23040	broad.mit.edu	37	2	1891327	1891327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:1891327C>T	uc002qxe.2	-	17	3402	c.2575G>A	c.(2575-2577)GAG>AAG	p.E859K	MYT1L_uc002qxd.2_Missense_Mutation_p.E857K|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	859					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ATGGTCACCTCCCCGGGATAC	0.498													21	88					0	0	0.010504	0	0
TSSC1	7260	broad.mit.edu	37	2	3197850	3197850	+	Silent	SNP	G	A	A	rs148363289	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:3197850G>A	uc002qxj.2	-	7	934	c.741C>T	c.(739-741)TGC>TGT	p.C247C	TSSC1_uc002qxi.2_RNA	NM_003310	NP_003301	Q53HC9	TSSC1_HUMAN	tumor suppressing subtransferable candidate 1	247	WD 3.						protein binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.212)		OV - Ovarian serous cystadenocarcinoma(76;0.00877)|Epithelial(75;0.0283)|all cancers(51;0.0464)		AGTCGTCTCCGCAGCTGGCCA	0.572													51	44					0	0	0.014410	0	0
RNASEH1	246243	broad.mit.edu	37	2	3599846	3599846	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:3599846G>A	uc002qxt.2	-	3	387	c.297C>T	c.(295-297)CTC>CTT	p.L99L	RNASEH1_uc002qxs.2_5'UTR	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	99					RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		GTGGCTCACGGAGTCGCTTGC	0.532													28	26					0	0	0.012213	0	0
ID2	3398	broad.mit.edu	37	2	8822544	8822544	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:8822544C>T	uc010yiu.1	+	3	744	c.249C>T	c.(247-249)CCC>CCT	p.P83P	ID2_uc002qza.2_Silent_p.P83P	NM_002166	NP_002157	Q02363	ID2_HUMAN	inhibitor of DNA binding 2	83					cellular senescence|embryonic digestive tract morphogenesis|endodermal digestive tract morphogenesis|epithelial cell differentiation involved in mammary gland alveolus development|mammary gland epithelial cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of neuron differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|neuron fate commitment|positive regulation of blood pressure|positive regulation of cell cycle arrest|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent	protein complex	protein binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ACTCGCATCCCACTATTGTCA	0.582													12	37					0	0	0.001855	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10866644	10866644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:10866644C>T	uc002ras.2	+	3	255	c.146C>T	c.(145-147)TCC>TTC	p.S49F	ATP6V1C2_uc002rat.2_Missense_Mutation_p.S49F	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	49					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		ACCTTGGATTCCCTGGTTGGC	0.458													10	51					0	0	0.013537	0	0
ROCK2	9475	broad.mit.edu	37	2	11338879	11338879	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:11338879G>T	uc002rbd.1	-	24	3381	c.2932C>A	c.(2932-2934)CTA>ATA	p.L978I		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	978	Potential.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		TCACTAGTTAGTGTCCTATTA	0.269													11	20					0.00010058	0.00011008	0.013537	1	0
LPIN1	23175	broad.mit.edu	37	2	11911506	11911506	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:11911506C>T	uc010yjn.1	+	5	571	c.297C>T	c.(295-297)ATC>ATT	p.I99I	LPIN1_uc010yjm.1_Silent_p.I148I|LPIN1_uc002rbt.2_Silent_p.I99I|LPIN1_uc002rbs.2_Silent_p.I99I	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	99	N-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		AGGAAGTTATCCCTATGCACC	0.507													7	53					0	0	0.003080	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17699398	17699398	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:17699398A>T	uc002rcl.1	-	1	309	c.285T>A	c.(283-285)AGT>AGA	p.S95R	RAD51AP2_uc010exn.1_Missense_Mutation_p.S86R	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	95										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TCTGCTTCCCACTGACTGATT	0.448													41	55					0	0	0.008740	0	0
APOB	338	broad.mit.edu	37	2	21249786	21249786	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:21249786C>T	uc002red.2	-	15	2246	c.2118G>A	c.(2116-2118)GGG>GGA	p.G706G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	706					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATCCTTGCTTCCCAAAAAGAG	0.418													75	263					0	0	0.014410	0	0
UBXN2A	165324	broad.mit.edu	37	2	24222604	24222604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:24222604C>T	uc010exy.2	+	8	1115	c.647C>T	c.(646-648)TCC>TTC	p.S216F	UBXN2A_uc002rem.2_RNA|UBXN2A_uc002ren.2_Missense_Mutation_p.S216F|UBXN2A_uc010ykj.1_Missense_Mutation_p.S163F	NM_181713	NP_859064	P68543	UBX2A_HUMAN	UBX domain containing 4	216	UBX.										0						CCTCCGTTTTCCCTGGCAACA	0.383													45	40					0	0	0.014410	0	0
DPYSL5	56896	broad.mit.edu	37	2	27167592	27167592	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:27167592G>A	uc002rhu.3	+	12	1667	c.1509G>A	c.(1507-1509)GGG>GGA	p.G503G	DPYSL5_uc002rhv.3_Silent_p.G503G	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	503					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCACCCTGGGAAAAAAGAGA	0.572													14	76					0	0	0.003163	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27503069	27503069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:27503069G>A	uc002rjl.1	+	6	974	c.556G>A	c.(556-558)GAA>AAA	p.E186K	TRIM54_uc002rjn.2_5'Flank|TRIM54_uc002rjo.2_5'Flank|DNAJC5G_uc010yli.1_Silent_p.A98A|DNAJC5G_uc002rjm.1_Missense_Mutation_p.E186K	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	186					protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGAAAATAGCGAAGATGATTT	0.343											OREG0014517	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	181					0	0	0.009718	0	0
C2orf16	84226	broad.mit.edu	37	2	27801023	27801023	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:27801023G>A	uc002rkz.3	+	1	1635	c.1584G>A	c.(1582-1584)ACG>ACA	p.T528T		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	528										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AGTCTGTGACGATACCAAGGC	0.433													11	55					0	0	0.008291	0	0
FOSL2	2355	broad.mit.edu	37	2	28627159	28627159	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:28627159C>T	uc002rma.2	+	2	1097	c.288C>T	c.(286-288)GCC>GCT	p.A96A	FOSL2_uc010ymi.1_Silent_p.A57A	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	96					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					GACACATGGCCCTCCCAAGAC	0.637													32	85					0	0	0.005524	0	0
PLB1	151056	broad.mit.edu	37	2	28843772	28843772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:28843772C>T	uc002rmb.1	+	49	3454	c.3454C>T	c.(3454-3456)CTC>TTC	p.L1152F	PLB1_uc010ezj.1_Missense_Mutation_p.L1141F|PLB1_uc002rme.1_Missense_Mutation_p.L117F|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1152	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CAACCCTTACCTCCTTGGCTT	0.552													46	46					0	0	0.014410	0	0
PPP1CB	5500	broad.mit.edu	37	2	29001786	29001786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:29001786C>T	uc002rmg.2	+	4	456	c.296C>T	c.(295-297)TCT>TTT	p.S99F	PPP1CB_uc010ymj.1_Missense_Mutation_p.S71F|PPP1CB_uc010ymk.1_Missense_Mutation_p.S71F|PPP1CB_uc010yml.1_Missense_Mutation_p.S71F|PPP1CB_uc002rmh.2_Missense_Mutation_p.S99F	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	99					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					GGAAAGCAGTCTTTGGAAACC	0.368													31	29					0	0	0.009535	0	0
FAM179A	165186	broad.mit.edu	37	2	29245104	29245104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:29245104G>A	uc010ezl.2	+	11	1792	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	FAM179A_uc010ymm.1_Missense_Mutation_p.E426K|FAM179A_uc002rmr.3_Missense_Mutation_p.E8K	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	481							binding			ovary(3)|skin(1)	4						AGCCTGTAAGGAGTTGAGGCC	0.537													24	42					0	0	0.004656	0	0
FAM179A	165186	broad.mit.edu	37	2	29259493	29259493	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:29259493C>T	uc010ezl.2	+	18	2856	c.2505C>T	c.(2503-2505)CCC>CCT	p.P835P	FAM179A_uc010ymm.1_Silent_p.P780P|FAM179A_uc002rmr.3_Silent_p.P362P|FAM179A_uc002rms.1_Silent_p.P133P	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	835							binding			ovary(3)|skin(1)	4						AGATGATCCCCCTCCTCAGAG	0.512													21	25					0	0	0.010504	0	0
C2orf71	388939	broad.mit.edu	37	2	29293657	29293657	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:29293657C>T	uc002rmt.1	-	1	3471	c.3471G>A	c.(3469-3471)GGG>GGA	p.G1157G		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1157					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTGCTGGGTTCCCGAGAGGGC	0.622													18	26					0	0	0.006122	0	0
ALK	238	broad.mit.edu	37	2	29754789	29754789	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:29754789C>T	uc002rmy.2	-	4	2053	c.1146G>A	c.(1144-1146)GGG>GGA	p.G382G		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	382	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	ACCCATGCTTCCCTGGAGTGG	0.498			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				26	26					0	0	0.005443	0	0
GALNT14	79623	broad.mit.edu	37	2	31167752	31167752	+	Missense_Mutation	SNP	G	A	A	rs138204092		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:31167752G>A	uc002rnr.2	-	8	1418	c.799C>T	c.(799-801)CGG>TGG	p.R267W	GALNT14_uc002rnq.2_Missense_Mutation_p.R247W|GALNT14_uc002rns.2_Missense_Mutation_p.R272W|GALNT14_uc010ymr.1_Missense_Mutation_p.R232W|GALNT14_uc010ezo.1_Missense_Mutation_p.R234W|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	267	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TCCAGGCGCCGAGCCTTCTGC	0.592													18	44					0	0	0.006122	0	0
BIRC6	57448	broad.mit.edu	37	2	32666457	32666457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:32666457C>T	uc010ezu.2	+	17	4005	c.3871C>T	c.(3871-3873)CGG>TGG	p.R1291W		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1291					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGAAAACCTCCGGGGCTGTGA	0.303													27	23					0	0	0.007291	0	0
LTBP1	4052	broad.mit.edu	37	2	33505208	33505208	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:33505208G>A	uc002ros.2	+	19	3098	c.3098G>A	c.(3097-3099)TGG>TAG	p.W1033*	LTBP1_uc002rot.2_Nonsense_Mutation_p.W707*|LTBP1_uc002rou.2_Nonsense_Mutation_p.W706*|LTBP1_uc002rov.2_Nonsense_Mutation_p.W653*|LTBP1_uc010ymz.1_Nonsense_Mutation_p.W706*|LTBP1_uc010yna.1_Nonsense_Mutation_p.W653*	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1032	EGF-like 7; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TTCCGAGGCTGGAATGGACAG	0.448													19	28					0	0	0.008871	0	0
CRIM1	51232	broad.mit.edu	37	2	36740728	36740728	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:36740728C>T	uc002rpd.2	+	11	1849	c.1810C>T	c.(1810-1812)CTG>TTG	p.L604L		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	604	Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				GCCACCCATCCTGTCGGGCAC	0.537													49	54					0	0	0.014410	0	0
ATL2	64225	broad.mit.edu	37	2	38527436	38527436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:38527436G>A	uc002rqq.2	-	10	1136	c.1106C>T	c.(1105-1107)CCA>CTA	p.P369L	ATL2_uc010ynm.1_Missense_Mutation_p.P351L|ATL2_uc010ynn.1_Missense_Mutation_p.P351L|ATL2_uc010yno.1_Missense_Mutation_p.P198L|ATL2_uc002rqs.2_Missense_Mutation_p.P369L|ATL2_uc002rqr.2_Missense_Mutation_p.P198L	NM_001135673	NP_001129145	Q8NHH9	ATLA2_HUMAN	atlastin GTPase 2 isoform 2	369	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			ovary(1)|kidney(1)|skin(1)	3						CTTTGGATGTGGAAGTTCTTC	0.373													16	36					0	0	0.006122	0	0
HNRPLL	92906	broad.mit.edu	37	2	38809232	38809232	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:38809232T>C	uc002rqw.2	-	5	1121	c.711A>G	c.(709-711)CTA>CTG	p.L237L	HNRPLL_uc002rqv.2_5'UTR|HNRPLL_uc002rqx.2_Silent_p.L232L	NM_138394	NP_612403	Q8WVV9	HNRLL_HUMAN	heterogeneous nuclear ribonucleoprotein L-like	237	RRM 2.				mRNA processing|positive regulation of RNA splicing	nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding			skin(1)	1		all_hematologic(82;0.248)				ATTCAATTTTTAGTGTGCAAC	0.338													7	38					0	0	0.004482	0	0
SLC8A1	6546	broad.mit.edu	37	2	40405527	40405527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:40405527C>T	uc002rrx.2	-	2	1939	c.1915G>A	c.(1915-1917)GCC>ACC	p.A639T	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.A639T|SLC8A1_uc002rrz.2_Intron|SLC8A1_uc002rsa.2_Intron|SLC8A1_uc002rsd.3_Intron|SLC8A1_uc002rsb.1_Intron	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	639	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GCTCCCCCACCTTTCTTCTCA	0.512													89	80					0	0	0.014410	0	0
ABCG5	64240	broad.mit.edu	37	2	44041707	44041707	+	Silent	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:44041707A>T	uc002rtn.2	-	12	1811	c.1671T>A	c.(1669-1671)ATT>ATA	p.I557I	ABCG5_uc002rtm.2_Silent_p.I162I|ABCG5_uc002rto.2_Silent_p.I386I|ABCG5_uc002rtp.2_Silent_p.I162I	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	557	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TTTTAAAAGGAATGGGCATTT	0.318													48	227					0	0	0.014410	0	0
LRPPRC	10128	broad.mit.edu	37	2	44153096	44153096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:44153096G>A	uc002rtr.2	-	26	2799	c.2741C>T	c.(2740-2742)CCA>CTA	p.P914L	LRPPRC_uc010yob.1_Missense_Mutation_p.P814L	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	914					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TCTAATCCCTGGAGTCTGTAA	0.363													102	162					0	0	0.014410	0	0
SLC3A1	6519	broad.mit.edu	37	2	44508527	44508527	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:44508527T>C	uc002ruc.3	+	3	690	c.612T>C	c.(610-612)GGT>GGC	p.G204G	SLC3A1_uc002rty.2_Silent_p.G204G|SLC3A1_uc002rtz.2_Silent_p.G204G|SLC3A1_uc002rua.2_Silent_p.G204G|SLC3A1_uc002rub.2_Silent_p.G204G	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	204	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	ACTCATTAGGTTTAAAATTAA	0.249													18	16					0	0	0.008871	0	0
LHCGR	3973	broad.mit.edu	37	2	48936151	48936151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:48936151C>T	uc002rwu.3	-	8	686	c.616G>A	c.(616-618)GAA>AAA	p.E206K	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	206	Extracellular (Potential).|LRR 5.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TGTACGTTTTCCTTTAGCTCC	0.507									Familial_Male-Limited_Precocious_Puberty				40	37					0	0	0.006999	0	0
FSHR	2492	broad.mit.edu	37	2	49189899	49189899	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:49189899G>A	uc002rww.2	-	10	2135	c.2061C>T	c.(2059-2061)GTC>GTT	p.V687V	FSHR_uc002rwx.2_Silent_p.V625V|FSHR_uc010fbn.2_Silent_p.V661V	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	687	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GACTTAGAGGGACAAGTATGT	0.343									Gonadal_Dysgenesis_46_XX				31	26					0	0	0.003271	0	0
FSHR	2492	broad.mit.edu	37	2	49381423	49381423	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:49381423G>T	uc002rww.2	-	1	208	c.134C>A	c.(133-135)CCG>CAG	p.P45Q	FSHR_uc002rwx.2_Missense_Mutation_p.P45Q|FSHR_uc010fbn.2_Missense_Mutation_p.P45Q|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	45	LRRNT.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GGCATTCCTCGGGAGGTCAGA	0.473									Gonadal_Dysgenesis_46_XX				9	43					6.42651e-13	7.0988e-13	0.010729	1	0
NRXN1	9378	broad.mit.edu	37	2	50724786	50724786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:50724786C>T	uc010fbq.2	-	14	4161	c.2684G>A	c.(2683-2685)CGA>CAA	p.R895Q	NRXN1_uc002rxb.3_Missense_Mutation_p.R527Q|NRXN1_uc002rxe.3_Missense_Mutation_p.R855Q|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			AAGATACCGTCGTTCTGTGAT	0.403													14	41					0	0	0.003163	0	0
GPR75	10936	broad.mit.edu	37	2	54081724	54081724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:54081724G>A	uc002rxo.3	-	2	441	c.170C>T	c.(169-171)TCC>TTC	p.S57F	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	57	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GTTGCCATAGGAACCCAGGCA	0.488													18	18					0	0	0.004990	0	0
C2orf73	129852	broad.mit.edu	37	2	54587394	54587394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:54587394C>T	uc002rxt.1	+	5	601	c.559C>T	c.(559-561)CCT>TCT	p.P187S	C2orf73_uc010yor.1_Missense_Mutation_p.P129S|C2orf73_uc002rxs.1_Missense_Mutation_p.P66S|C2orf73_uc010yos.1_RNA	NM_001100396	NP_001093866	Q8N5S3	CB073_HUMAN	hypothetical protein LOC129852	187											0						GCCAACAGTTCCTAAAGGAGC	0.443													3	12					0	0	0.004672	0	0
C2orf86	51057	broad.mit.edu	37	2	63380059	63380059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:63380059C>T	uc002sch.2	-	17	2626	c.2180G>A	c.(2179-2181)GGC>GAC	p.G727D	C2orf86_uc002sce.2_RNA|C2orf86_uc002scf.2_Missense_Mutation_p.G568D|C2orf86_uc010ypu.1_RNA|C2orf86_uc002scg.2_Missense_Mutation_p.G535D	NM_015910	NP_056994	O95876	FRITZ_HUMAN	hypothetical protein LOC51057 isoform 2	727					cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization	cilium axoneme|cytoplasm|cytoskeleton|plasma membrane					0						CTGTTCTCTGCCGTCTTCTCT	0.274													14	24					0	0	0.004990	0	0
UGP2	7360	broad.mit.edu	37	2	64118353	64118353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:64118353G>A	uc002scm.2	+	10	1825	c.1519G>A	c.(1519-1521)GAC>AAC	p.D507N	UGP2_uc002scl.2_Missense_Mutation_p.D496N|UGP2_uc010ypx.1_Missense_Mutation_p.D516N	NM_006759	NP_006750	Q16851	UGPA_HUMAN	UDP-glucose pyrophosphorylase 2 isoform a	507	Oligomerization (By similarity).				glycogen biosynthetic process|phosphorylation|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	metal ion binding|protein binding|UTP:glucose-1-phosphate uridylyltransferase activity				0						TCGCATCTTGGACCACTGAAA	0.383													14	26					0	0	0.001855	0	0
ADD2	119	broad.mit.edu	37	2	70917918	70917918	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:70917918C>T	uc002sgz.2	-	8	1314	c.849G>A	c.(847-849)AAG>AAA	p.K283K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.K283K|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Silent_p.K283K|ADD2_uc010fdt.1_Silent_p.K283K|ADD2_uc002shc.1_Silent_p.K283K|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Silent_p.K299K	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	283					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CTAAGCTAACCTTGCAGGTGG	0.488													35	43					0	0	0.004878	0	0
DYSF	8291	broad.mit.edu	37	2	71797378	71797379	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:71797378_71797379CC>TT	uc002sie.2	+	28	3321_3322	c.2945_2946CC>TT	c.(2944-2946)CCC>CTT	p.P982L	DYSF_uc010feg.2_Missense_Mutation_p.P1013L|DYSF_uc010feh.2_Missense_Mutation_p.P968L|DYSF_uc002sig.3_Missense_Mutation_p.P968L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P982L|DYSF_uc010fef.2_Missense_Mutation_p.P999L|DYSF_uc010fei.2_Missense_Mutation_p.P999L|DYSF_uc010fek.2_Missense_Mutation_p.P1000L|DYSF_uc010fej.2_Missense_Mutation_p.P969L|DYSF_uc010fel.2_Missense_Mutation_p.P969L|DYSF_uc010feo.2_Missense_Mutation_p.P1014L|DYSF_uc010fem.2_Missense_Mutation_p.P983L|DYSF_uc010fen.2_Missense_Mutation_p.P1000L|DYSF_uc002sif.2_Missense_Mutation_p.P983L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	982	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AAGGTGCTTCCCAAGGATGACA	0.54													25	42					0	0	0.004672	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73302721	73302721	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:73302721G>A	uc002siu.3	-	5	2131	c.1890C>T	c.(1888-1890)ATC>ATT	p.I630I	RAB11FIP5_uc002sis.3_Missense_Mutation_p.S9L|RAB11FIP5_uc002sit.3_Silent_p.I552I	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	630	FIP-RBD.				protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						GCAGCCGGTCGATGTAGCTCT	0.652													20	29					0	0	0.010504	0	0
SMYD5	10322	broad.mit.edu	37	2	73446039	73446039	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:73446039C>T	uc002siw.2	+	2	176	c.147C>T	c.(145-147)TTC>TTT	p.F49F	SMYD5_uc010yre.1_5'UTR	NM_006062	NP_006053	Q6GMV2	SMYD5_HUMAN	SMYD family member 5	49							metal ion binding				0						AGACCATCTTCGTAGAACGGC	0.537													33	25					0	0	0.004289	0	0
ALMS1	7840	broad.mit.edu	37	2	73761968	73761968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:73761968C>T	uc002sje.1	+	14	9913	c.9802C>T	c.(9802-9804)CCA>TCA	p.P3268S	ALMS1_uc002sjf.1_Missense_Mutation_p.P3224S|ALMS1_uc002sjg.2_Missense_Mutation_p.P2654S|ALMS1_uc002sjh.1_Missense_Mutation_p.P2654S|ALMS1_uc010fev.1_Missense_Mutation_p.P83S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3266					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TTTATTATTGCCATATAAGCC	0.294													38	70					0	0	0.006999	0	0
ALMS1	7840	broad.mit.edu	37	2	73799595	73799595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:73799595C>T	uc002sje.1	+	18	10705	c.10594C>T	c.(10594-10596)CCT>TCT	p.P3532S	ALMS1_uc002sjf.1_Missense_Mutation_p.P3488S|ALMS1_uc002sjg.2_Missense_Mutation_p.P2918S|ALMS1_uc002sjh.1_Missense_Mutation_p.P2918S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3530					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCTTCCTCTTCCTTATCAAAA	0.368													11	24					0	0	0.010729	0	0
C2orf78	388960	broad.mit.edu	37	2	74040936	74040936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:74040936G>A	uc002sjr.1	+	2	551	c.430G>A	c.(430-432)GAC>AAC	p.D144N		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	144										ovary(2)	2						CTCACTCAGGGACTTCACTGT	0.448													12	22					0	0	0.013537	0	0
SLC4A5	57835	broad.mit.edu	37	2	74466523	74466523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:74466523C>T	uc002sko.1	-	16	2260	c.2258G>A	c.(2257-2259)GGG>GAG	p.G753E	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.G753E|SLC4A5_uc010ffc.1_Missense_Mutation_p.G753E|SLC4A5_uc002skp.1_Missense_Mutation_p.G689E|SLC4A5_uc002sks.1_Missense_Mutation_p.G753E	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	753	Helical; (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						GGAGTATGTCCCAAAGAAAAG	0.527													13	36					0	0	0.003163	0	0
DCTN1	1639	broad.mit.edu	37	2	74590268	74590268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:74590268G>A	uc002skx.2	-	29	3693	c.3382C>T	c.(3382-3384)CCT>TCT	p.P1128S	SLC4A5_uc002skl.2_RNA|DCTN1_uc002skt.1_Missense_Mutation_p.P62S|DCTN1_uc002skv.2_Missense_Mutation_p.P994S|DCTN1_uc002sku.2_Missense_Mutation_p.P989S|DCTN1_uc002skw.1_Missense_Mutation_p.P1104S|DCTN1_uc010ffd.2_Missense_Mutation_p.P1103S|DCTN1_uc002sky.2_Missense_Mutation_p.P1086S	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	1128					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						ACATGCAGAGGGGGCAGGGAT	0.532													10	35					0	0	0.008291	0	0
TTC31	64427	broad.mit.edu	37	2	74717502	74717502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:74717502C>T	uc002slt.2	+	4	387	c.364C>T	c.(364-366)CCC>TCC	p.P122S	TTC31_uc002sls.2_Missense_Mutation_p.P51S|TTC31_uc010yrv.1_5'UTR|TTC31_uc002slu.2_5'UTR	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	122							binding				0						AGAGTCTGAGCCCTGCCCTCA	0.602													23	17					0	0	0.003330	0	0
REG3A	5068	broad.mit.edu	37	2	79384749	79384749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:79384749G>A	uc002sod.1	-	4	664	c.409C>T	c.(409-411)CCC>TCC	p.P137S	REG3A_uc002soe.1_Missense_Mutation_p.P137S|REG3A_uc002sof.1_Missense_Mutation_p.P137S	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	137	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						ATGGTGGAGGGATTTCTCTCC	0.547													23	46					0	0	0.004656	0	0
CTNNA2	1496	broad.mit.edu	37	2	80773066	80773066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:80773066C>T	uc010ysh.1	+	10	1423	c.1418C>T	c.(1417-1419)CCA>CTA	p.P473L	CTNNA2_uc010yse.1_Missense_Mutation_p.P473L|CTNNA2_uc010ysf.1_Missense_Mutation_p.P473L|CTNNA2_uc010ysg.1_Missense_Mutation_p.P473L|CTNNA2_uc010ysi.1_Missense_Mutation_p.P105L	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	473					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GCTGCCCGGCCACAGAGCAAA	0.512													5	32					0	0	0.000602	0	0
USP39	10713	broad.mit.edu	37	2	85866461	85866462	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:85866461_85866462CC>TT	uc002sqe.2	+	9	1267_1268	c.1231_1232CC>TT	c.(1231-1233)CCC>TTC	p.P411F	USP39_uc002sqb.2_Missense_Mutation_p.P142F|USP39_uc010ysu.1_Missense_Mutation_p.P333F|USP39_uc010ysv.1_Missense_Mutation_p.P308F|USP39_uc010fgn.1_Missense_Mutation_p.P411F|USP39_uc002sqf.2_Missense_Mutation_p.P411F|USP39_uc002sqg.2_Missense_Mutation_p.P411F|USP39_uc010fgo.2_Missense_Mutation_p.P411F	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	411					spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						GCTCATCATTCCCCAAGTGCCA	0.525													20	28					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	89160094	89160094	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:89160094C>T	uc010ytr.1	-	239		c.9696G>A			uc002sti.1_RNA|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		AATCTCCAGTCGTGTCCCTTG	0.383													32	33					0	0	0.004289	0	0
Unknown	0	broad.mit.edu	37	2	90249238	90249238	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:90249238C>T	uc010fhm.2	+	28		c.3781C>T								Parts of antibodies, mostly variable regions.																		CCAGCAAAAGCCCCTAAGCTC	0.502													30	111					0	0	0.012213	0	0
Unknown	0	broad.mit.edu	37	2	90260137	90260137	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:90260137C>T	uc010fhm.2	+	30		c.4120C>T								Parts of antibodies, mostly variable regions.																		AAAGTGGGGTCCCATCAAGGT	0.468													24	96					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	2	90458670	90458670	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:90458670C>T	uc010fhm.2	+	31		c.4289C>T								Parts of antibodies, mostly variable regions.																		CAGTACCCCTCCCACAGCGTT	0.517													12	332					0	0	0.002450	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95483152	95483152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:95483152C>T	uc010fhq.1	-	1	395	c.3G>A	c.(1-3)ATG>ATA	p.M1I	ANKRD20B_uc010fhp.2_Intron	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						ATAAAGAGTTCATCCTGTGAT	0.264													3	6					0	0	0.004672	0	0
PROM2	150696	broad.mit.edu	37	2	95941749	95941749	+	Silent	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:95941749T>G	uc002suh.1	+	3	499	c.366T>G	c.(364-366)ACT>ACG	p.T122T	PROM2_uc002sui.2_Silent_p.T122T|PROM2_uc002suj.2_5'UTR|PROM2_uc002suk.2_Silent_p.T122T|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	122	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						TGGTGCCCACTGCCGGGCTTT	0.692													4	15					0	0	0.000602	0	0
TMEM131	23505	broad.mit.edu	37	2	98411450	98411450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:98411450G>A	uc002syh.3	-	29	3558	c.3329C>T	c.(3328-3330)GCC>GTC	p.A1110V		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1110	Helical; (Potential).					integral to membrane				ovary(4)|central_nervous_system(2)	6						TCTGGGTAGGGCTTCTGCACA	0.373													5	19					0	0	0.000602	0	0
CNGA3	1261	broad.mit.edu	37	2	99012514	99012514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:99012514G>A	uc002syt.2	+	8	1298	c.881G>A	c.(880-882)AGG>AAG	p.R294K	CNGA3_uc002syu.2_Missense_Mutation_p.R276K|CNGA3_uc010fij.2_Missense_Mutation_p.R298K	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	294					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						ACAGAGACAAGGACCAACTAC	0.463													16	29					0	0	0.003163	0	0
NPAS2	4862	broad.mit.edu	37	2	101598751	101598751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:101598751G>A	uc002tap.1	+	16	1827	c.1541G>A	c.(1540-1542)CGG>CAG	p.R514Q	NPAS2_uc010yvt.1_Missense_Mutation_p.R579Q|NPAS2_uc010fit.1_Missense_Mutation_p.R92Q	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	514					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CAGCGGACGCGGATCCTGCAG	0.532													19	16					0	0	0.008871	0	0
NPAS2	4862	broad.mit.edu	37	2	101609814	101609814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:101609814C>T	uc002tap.1	+	20	2403	c.2117C>T	c.(2116-2118)GCC>GTC	p.A706V	NPAS2_uc010yvt.1_Missense_Mutation_p.A771V|NPAS2_uc010fit.1_Silent_p.R123R	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	706					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						AACAGGTACGCCCAGAGCCAG	0.453													13	29					0	0	0.002450	0	0
IL1RL2	8808	broad.mit.edu	37	2	102804359	102804359	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:102804359T>C	uc002tbs.2	+	2	158	c.32T>C	c.(31-33)ATC>ACC	p.I11T	IL1RL2_uc002tbt.2_Missense_Mutation_p.S38P	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	11					cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						GGGTTGTCCATCGCCCTTCCA	0.657													28	38					0	0	0.005443	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107423353	107423353	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:107423353G>A	uc002tdq.2	-	6	1490	c.1371C>T	c.(1369-1371)ATC>ATT	p.I457I	ST6GAL2_uc002tdr.2_Silent_p.I457I	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	457	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GCACGGATGGGATATATTCAT	0.507													11	31					0	0	0.010729	0	0
RGPD4	285190	broad.mit.edu	37	2	108487252	108487252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:108487252G>A	uc010ywk.1	+	20	2874	c.2792G>A	c.(2791-2793)GGA>GAA	p.G931E	RGPD4_uc002tdu.2_Missense_Mutation_p.G118E|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	931					intracellular transport		binding			skin(2)	2						TCGGAACCAGGAAATCAAGAA	0.408													113	142					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108488514	108488514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:108488514G>A	uc010ywk.1	+	20	4136	c.4054G>A	c.(4054-4056)GAA>AAA	p.E1352K	RGPD4_uc002tdu.2_Missense_Mutation_p.E539K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1352	RanBD1 2.				intracellular transport		binding			skin(2)	2						CAGTGGTGAGGAAAATGAAAA	0.368													109	133					0	0	0.014410	0	0
SLC5A7	60482	broad.mit.edu	37	2	108618400	108618400	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:108618400C>T	uc002tdv.2	+	6	921	c.645C>T	c.(643-645)ATC>ATT	p.I215I	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Silent_p.I215I|SLC5A7_uc010ywn.1_Silent_p.I102I	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	215	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TCGCAGACATCGGGTTCACTG	0.488													14	56					0	0	0.004990	0	0
SULT1C3	442038	broad.mit.edu	37	2	108875273	108875273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:108875273G>A	uc010ywo.1	+	5	610	c.610G>A	c.(610-612)GAT>AAT	p.D204N		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	204	PAPS.					cytoplasm	alcohol sulfotransferase activity			skin(1)	1						CTTCTACGAGGATATTAAAAA	0.453													11	48					0	0	0.008291	0	0
SULT1C4	27233	broad.mit.edu	37	2	109002778	109002778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:109002778C>T	uc002tea.1	+	6	1119	c.746C>T	c.(745-747)TCG>TTG	p.S249L	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.S174L	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	249					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						AACTATTCATCGATTCCTGCT	0.303													22	64					0	0	0.005443	0	0
RANBP2	5903	broad.mit.edu	37	2	109345596	109345596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:109345596G>A	uc002tem.3	+	2	207	c.81G>A	c.(79-81)ATG>ATA	p.M27I		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	27					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AGAAGTCAATGAAAGGATTCT	0.234													14	37					0	0	0.004007	0	0
MERTK	10461	broad.mit.edu	37	2	112777026	112777026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:112777026G>A	uc002thk.1	+	16	2238	c.2116G>A	c.(2116-2118)GAT>AAT	p.D706N	MERTK_uc002thl.1_Missense_Mutation_p.D530N	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	706	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GTTCATGGTGGATATTGCCCT	0.413													69	73					0	0	0.014410	0	0
IL1F8	27177	broad.mit.edu	37	2	113780347	113780347	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:113780347C>T	uc002tiq.1	-	6	503	c.399G>A	c.(397-399)AAG>AAA	p.K133K		NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	133					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						TCTTCCACTTCTTTCTACCTG	0.433													23	41					0	0	0.002780	0	0
IL1RN	3557	broad.mit.edu	37	2	113890433	113890433	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:113890433C>T	uc002tjb.2	+	4	583	c.519C>T	c.(517-519)TTC>TTT	p.F173F	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_Silent_p.F139F|IL1RN_uc002tiz.2_Silent_p.F176F|IL1RN_uc002tja.2_Silent_p.F155F	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	173					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	AATTCTACTTCCAGGAGGACG	0.607									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				40	46					0	0	0.008740	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257251	114257251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:114257251C>T	uc002tjw.3	+	1	591	c.418C>T	c.(418-420)CGC>TGC	p.R140C		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	140	Fork-head.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CATTAGTGGCCGCTTCCCCTA	0.632													52	217					0	0	0.014410	0	0
DPP10	57628	broad.mit.edu	37	2	116066836	116066837	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:116066836_116066837CC>TT	uc002tla.1	+	2	539_540	c.82_83CC>TT	c.(82-84)CCA>TTA	p.P28L	DPP10_uc002tlb.1_5'UTR|DPP10_uc002tlc.1_Missense_Mutation_p.P24L|DPP10_uc002tle.2_Missense_Mutation_p.P32L|DPP10_uc002tlf.1_Missense_Mutation_p.P21L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	28	Mediates effects on KCND2.|Cytoplasmic (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TAACAGCCCTCCACAGAGAAAC	0.396													9	29					0	0	0.004672	0	0
DPP10	57628	broad.mit.edu	37	2	116066841	116066841	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:116066841G>A	uc002tla.1	+	2	544	c.87G>A	c.(85-87)CAG>CAA	p.Q29Q	DPP10_uc002tlb.1_5'UTR|DPP10_uc002tlc.1_Silent_p.Q25Q|DPP10_uc002tle.2_Silent_p.Q33Q|DPP10_uc002tlf.1_Silent_p.Q22Q	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	29	Mediates effects on KCND2.|Cytoplasmic (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GCCCTCCACAGAGAAACTGGA	0.393													11	28					0	0	0.013537	0	0
DPP10	57628	broad.mit.edu	37	2	116503668	116503668	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:116503668C>T	uc002tla.1	+	10	1316	c.859C>T	c.(859-861)CAA>TAA	p.Q287*	DPP10_uc002tlb.1_Nonsense_Mutation_p.Q237*|DPP10_uc002tlc.1_Nonsense_Mutation_p.Q283*|DPP10_uc002tle.2_Nonsense_Mutation_p.Q291*|DPP10_uc002tlf.1_Nonsense_Mutation_p.Q280*	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	287	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AAAGGCAGGTCAAGTGAACCC	0.333													4	17					0	0	0.000602	0	0
MARCO	8685	broad.mit.edu	37	2	119739022	119739022	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:119739022G>A	uc002tln.1	+	9	936	c.804G>A	c.(802-804)GGG>GGA	p.G268G	MARCO_uc010yyf.1_Silent_p.G190G	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	268	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GAGATGCAGGGGTCATGGGGC	0.567													6	27					0	0	0.001168	0	0
GLI2	2736	broad.mit.edu	37	2	121708892	121708892	+	Missense_Mutation	SNP	C	T	T	rs143139718		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:121708892C>T	uc010flp.2	+	3	358	c.328C>T	c.(328-330)CCT>TCT	p.P110S	GLI2_uc010yyu.1_Missense_Mutation_p.P110S|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Intron|GLI2_uc010flo.1_5'UTR|GLI2_uc002tmw.1_Missense_Mutation_p.P110S	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	110					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCCGGCTGGCCCTGGGGAGTC	0.647													33	65					0	0	0.013726	0	0
CYP27C1	339761	broad.mit.edu	37	2	127951372	127951373	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:127951372_127951373GG>AA	uc002tod.2	-	6	921_922	c.790_791CC>TT	c.(790-792)CCG>TTG	p.P264L		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	264						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		CACGCCTTTCGGAATCAGATAC	0.589													24	31					0	0	0.004672	0	0
MYO7B	4648	broad.mit.edu	37	2	128331608	128331608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:128331608C>T	uc002top.2	+	7	759	c.706C>T	c.(706-708)CTC>TTC	p.L236F		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	236	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CGAGCAATTTCTCCTGGAGAA	0.597													30	118					0	0	0.008740	0	0
MYO7B	4648	broad.mit.edu	37	2	128351213	128351213	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:128351213C>T	uc002top.2	+	18	2291	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	746	IQ 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CAAAAATTTTCCTGAGGGTGA	0.607													14	56					0	0	0.003163	0	0
SAP130	79595	broad.mit.edu	37	2	128767935	128767935	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:128767935G>A	uc002tpp.2	-	7	987	c.855C>T	c.(853-855)ATC>ATT	p.I285I	SAP130_uc002tpn.2_Silent_p.I46I|SAP130_uc002tpo.2_Silent_p.I30I|SAP130_uc010fmd.2_Silent_p.I285I|SAP130_uc002tpq.1_Silent_p.I259I	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	285					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		CAGCAGGAGGGATGGCATTGG	0.448													4	36					0	0	0.000602	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542818	133542818	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:133542818C>T	uc002ttp.2	-	14	1940	c.1566G>A	c.(1564-1566)CTG>CTA	p.L522L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	522							protein binding				0						ATGTGCCTTCCAGAAAGTGTT	0.498													65	78					0	0	0.014410	0	0
ACMSD	130013	broad.mit.edu	37	2	135630063	135630063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:135630063G>A	uc002ttz.2	+	8	768	c.701G>A	c.(700-702)GGA>GAA	p.G234E	ACMSD_uc002tua.2_Missense_Mutation_p.G176E|uc010zbe.1_Intron	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	234					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		TTCACAGTGGGAAGAATCTCC	0.468													12	22					0	0	0.003163	0	0
YSK4	80122	broad.mit.edu	37	2	135782196	135782196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:135782196C>T	uc002tue.1	-	1	53	c.22G>A	c.(22-24)GAA>AAA	p.E8K	YSK4_uc010fne.1_Intron|YSK4_uc002tuf.1_Missense_Mutation_p.E8K|YSK4_uc010fnc.1_Missense_Mutation_p.E8K|YSK4_uc010fnd.1_Missense_Mutation_p.E8K|YSK4_uc010zbg.1_Missense_Mutation_p.E8K|YSK4_uc002tui.3_5'Flank	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	8							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		AAGTATTTACCTGGTTTTGGC	0.328													19	89					0	0	0.014323	0	0
LCT	3938	broad.mit.edu	37	2	136567040	136567040	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:136567040C>T	uc002tuu.1	-	8	2888	c.2877G>A	c.(2875-2877)CTG>CTA	p.L959L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	959	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GATCGGCATCCAGCTGGTGAT	0.517													25	67					0	0	0.005443	0	0
THSD7B	80731	broad.mit.edu	37	2	137748477	137748477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:137748477G>A	uc002tva.1	+	1	16	c.16G>A	c.(16-18)GAT>AAT	p.D6N	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TAACACAGCAGATGAGGTGGT	0.393													5	6					0	0	0.001984	0	0
LRP1B	53353	broad.mit.edu	37	2	141004696	141004696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:141004696C>T	uc002tvj.1	-	87	14255	c.13283G>A	c.(13282-13284)AGG>AAG	p.R4428K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4428	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGGGGCTGGCCTTTCACACTG	0.388										TSP Lung(27;0.18)			3	30					0	0	0.004672	0	0
LRP1B	53353	broad.mit.edu	37	2	141079576	141079576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:141079576C>T	uc002tvj.1	-	82	13568	c.12596G>A	c.(12595-12597)GGA>GAA	p.G4199E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4199	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAAATATTTTCCTTCTGGACA	0.358										TSP Lung(27;0.18)			25	31					0	0	0.003954	0	0
LRP1B	53353	broad.mit.edu	37	2	141108583	141108583	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:141108583A>G	uc002tvj.1	-	77	12647	c.11675T>C	c.(11674-11676)ATT>ACT	p.I3892T		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3892	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTCATTAGCAATGTAGAGAAC	0.274										TSP Lung(27;0.18)			51	62					0	0	0.014410	0	0
LRP1B	53353	broad.mit.edu	37	2	141607744	141607744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:141607744C>T	uc002tvj.1	-	29	5838	c.4866G>A	c.(4864-4866)TGG>TGA	p.W1622*	LRP1B_uc010fnl.1_Nonsense_Mutation_p.W804*	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1622	Extracellular (Potential).|LDL-receptor class B 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAATATCTGTCCAGTATAAAC	0.353										TSP Lung(27;0.18)			17	65					0	0	0.007413	0	0
LRP1B	53353	broad.mit.edu	37	2	141680548	141680548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:141680548G>A	uc002tvj.1	-	21	4277	c.3305C>T	c.(3304-3306)TCC>TTC	p.S1102F	LRP1B_uc010fnl.1_Missense_Mutation_p.S284F	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1102	Extracellular (Potential).|LDL-receptor class A 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTCCAACAGGAAAACTTGGT	0.443										TSP Lung(27;0.18)			24	39					0	0	0.003954	0	0
LRP1B	53353	broad.mit.edu	37	2	141806759	141806759	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:141806759T>C	uc002tvj.1	-	11	2557	c.1585A>G	c.(1585-1587)AAA>GAA	p.K529E	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	529	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGGCGTCCTTTCCCATAAAAG	0.403										TSP Lung(27;0.18)			44	47					0	0	0.009718	0	0
NEB	4703	broad.mit.edu	37	2	152512907	152512907	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:152512907G>A	uc010fnx.2	-	49	6446	c.6255C>T	c.(6253-6255)CCC>CCT	p.P2085P		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2085	Nebulin 55.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGACTAATTTGGGATCATCCT	0.413													55	57					0	0	0.014410	0	0
NEB	4703	broad.mit.edu	37	2	152554087	152554087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:152554087C>T	uc010fnx.2	-	14	1419	c.1228G>A	c.(1228-1230)GAT>AAT	p.D410N	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	410	Nebulin 10.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGAACAGTATCGAGCTTGAAT	0.328													21	74					0	0	0.002780	0	0
PKP4	8502	broad.mit.edu	37	2	159488315	159488315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:159488315C>T	uc002tzv.2	+	8	1464	c.1204C>T	c.(1204-1206)CGT>TGT	p.R402C	PKP4_uc002tzt.1_Missense_Mutation_p.R254C|PKP4_uc002tzu.2_Missense_Mutation_p.R402C|PKP4_uc002tzw.2_Missense_Mutation_p.R402C|PKP4_uc002tzx.2_Missense_Mutation_p.R60C|PKP4_uc002tzy.1_Missense_Mutation_p.R60C|PKP4_uc002tzz.1_Missense_Mutation_p.R400C|PKP4_uc002uaa.2_Missense_Mutation_p.R254C	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	402					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						GCAAGACCTTCGTTCTGCCGT	0.493										HNSCC(62;0.18)			31	106					0	0	0.012213	0	0
PKP4	8502	broad.mit.edu	37	2	159499059	159499059	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:159499059T>C	uc002tzv.2	+	11	2017	c.1757T>C	c.(1756-1758)GTT>GCT	p.V586A	PKP4_uc002tzt.1_Missense_Mutation_p.V438A|PKP4_uc002tzu.2_Missense_Mutation_p.V586A|PKP4_uc002tzw.2_Missense_Mutation_p.V586A|PKP4_uc002tzx.2_Missense_Mutation_p.V243A|PKP4_uc002tzy.1_Missense_Mutation_p.V244A|PKP4_uc002tzz.1_Missense_Mutation_p.V584A|PKP4_uc002uaa.2_Missense_Mutation_p.V438A	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	586	ARM 3.				cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						GTTTTGGAAGTTCAGAAGAAT	0.423										HNSCC(62;0.18)			46	58					0	0	0.014410	0	0
TANC1	85461	broad.mit.edu	37	2	160087160	160087161	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:160087160_160087161CC>TT	uc002uag.2	+	27	5497_5498	c.5223_5224CC>TT	c.(5221-5226)AGCCGC>AGTTGC	p.R1742C	TANC1_uc010zcm.1_3'UTR|TANC1_uc010fon.2_Missense_Mutation_p.R586C	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1742						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						ATCCTCCAAGCCGCAGCTGGCA	0.579													29	75					0	0	0.004672	0	0
PLA2R1	22925	broad.mit.edu	37	2	160901448	160901448	+	Silent	SNP	G	A	A	rs147284017	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:160901448G>A	uc002ube.1	-	2	537	c.330C>T	c.(328-330)CTC>CTT	p.L110L	PLA2R1_uc010zcp.1_Silent_p.L110L|PLA2R1_uc002ubf.2_Silent_p.L110L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	110	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GTAAGGAAACGAGGGTGGAGT	0.542													15	51					0	0	0.004007	0	0
SLC4A10	57282	broad.mit.edu	37	2	162833319	162833319	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:162833319T>G	uc002ubx.3	+	25	3461	c.3277T>G	c.(3277-3279)TTG>GTG	p.L1093V	SLC4A10_uc002uby.3_Missense_Mutation_p.L1063V|SLC4A10_uc010zcs.1_Missense_Mutation_p.L1074V	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	1093	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						AAAGACTGCCTTGTGGAGGAA	0.343													7	11					0	0	0.004482	0	0
KCNH7	90134	broad.mit.edu	37	2	163374419	163374419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:163374419G>A	uc002uch.1	-	4	925	c.713C>T	c.(712-714)TCC>TTC	p.S238F	KCNH7_uc002uci.2_Missense_Mutation_p.S238F	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	238	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTTGGGAGAGGAATGGTCAAG	0.488													15	71					0	0	0.003163	0	0
FIGN	55137	broad.mit.edu	37	2	164466984	164466984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:164466984G>A	uc002uck.1	-	3	1669	c.1358C>T	c.(1357-1359)TCC>TTC	p.S453F		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	453						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						AGAGTGGTTGGATGAGGTAGC	0.542													14	39					0	0	0.001855	0	0
SCN1A	6323	broad.mit.edu	37	2	166848838	166848838	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:166848838C>T	uc010zcz.1	-	26	4932	c.4914G>A	c.(4912-4914)CTG>CTA	p.L1638L		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1649	Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).|IV.		L -> Q (in FHM3).			voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CTCCTTTGATCAGACGTAGGA	0.488													39	47					0	0	0.007835	0	0
SCN9A	6335	broad.mit.edu	37	2	167083152	167083152	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:167083152G>A	uc010fpl.2	-	24	4631	c.4290C>T	c.(4288-4290)ATC>ATT	p.I1430I	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1441	Helical; Name=S6 of repeat III; (Potential).|III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ACCCAAAGATGATAAAGACGA	0.289													3	10					0	0	0.004672	0	0
SCN9A	6335	broad.mit.edu	37	2	167134678	167134678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:167134678C>T	uc010fpl.2	-	15	2797	c.2456G>A	c.(2455-2457)GGA>GAA	p.G819E	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	830	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AACTGACAATCCTTCCACATC	0.353													10	45					0	0	0.010729	0	0
SCN7A	6332	broad.mit.edu	37	2	167298103	167298103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:167298103C>T	uc002udu.1	-	14	2087	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	654					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACAAATTCTTCATAATTCTTA	0.443													19	34					0	0	0.008871	0	0
SCN7A	6332	broad.mit.edu	37	2	167328850	167328850	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:167328850G>A	uc002udu.1	-	5	676	c.549C>T	c.(547-549)CTC>CTT	p.L183L	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	183	Helical; Name=S3 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CGCTGAAATCGAGCCAGTTCC	0.353													6	10					0	0	0.001984	0	0
XIRP2	129446	broad.mit.edu	37	2	168096438	168096438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:168096438C>T	uc002udx.2	+	5	950	c.932C>T	c.(931-933)TCC>TTC	p.S311F	XIRP2_uc010fpn.2_Missense_Mutation_p.S344F|XIRP2_uc010fpo.2_Missense_Mutation_p.S311F|XIRP2_uc010fpp.2_Missense_Mutation_p.S311F|XIRP2_uc002udy.2_Missense_Mutation_p.S136F|XIRP2_uc010fpq.2_Missense_Mutation_p.S89F|XIRP2_uc010fpr.2_Missense_Mutation_p.S89F	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	136					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAAGAAGGGTCCAAAGTACAG	0.403													10	37					0	0	0.008291	0	0
XIRP2	129446	broad.mit.edu	37	2	168100438	168100438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:168100438G>A	uc002udx.2	+	8	2554	c.2536G>A	c.(2536-2538)GAA>AAA	p.E846K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E671K|XIRP2_uc010fpq.2_Missense_Mutation_p.E624K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	671	Xin 9.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTGGATGTTTGAAACCCAGCC	0.373													21	80					0	0	0.012319	0	0
XIRP2	129446	broad.mit.edu	37	2	168101571	168101571	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:168101571C>T	uc002udx.2	+	8	3687	c.3669C>T	c.(3667-3669)ATC>ATT	p.I1223I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.I1048I|XIRP2_uc010fpq.2_Silent_p.I1001I|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1048					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGAAAAAGATCAAAACCTTAA	0.318													14	18					0	0	0.002450	0	0
XIRP2	129446	broad.mit.edu	37	2	168104646	168104646	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:168104646G>A	uc002udx.2	+	8	6762	c.6744G>A	c.(6742-6744)TTG>TTA	p.L2248L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.L2073L|XIRP2_uc010fpq.2_Silent_p.L2026L|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2073					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATGTTCACTTGAAAAGCCAGG	0.368													9	18					0	0	0.004482	0	0
LRP2	4036	broad.mit.edu	37	2	170063063	170063063	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:170063063G>A	uc002ues.2	-	39	7380	c.7167C>T	c.(7165-7167)TTC>TTT	p.F2389F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2389	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAAAGATGAGGAAATTTTCTG	0.438													28	28					0	0	0.005443	0	0
LRP2	4036	broad.mit.edu	37	2	170115698	170115698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:170115698C>T	uc002ues.2	-	17	2563	c.2350G>A	c.(2350-2352)GAA>AAA	p.E784K	LRP2_uc010zdf.1_Missense_Mutation_p.E647K	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	784	LDL-receptor class B 6.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCAACATTTTCCACCCTGTTA	0.338													20	59					0	0	0.014323	0	0
TLK1	9874	broad.mit.edu	37	2	171884887	171884887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:171884887C>T	uc002ugn.2	-	12	1670	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	TLK1_uc002ugo.2_Missense_Mutation_p.E421K|TLK1_uc002ugp.2_Missense_Mutation_p.E352K|TLK1_uc002ugq.2_RNA|TLK1_uc010zdn.1_Missense_Mutation_p.E304K	NM_012290	NP_036422	Q9UKI8	TLK1_HUMAN	tousled-like kinase 1 isoform 1	400	Potential.				cell cycle|chromatin modification|intracellular protein transport|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						AAAATTTCTTCCTGTTCATGA	0.294													8	31					0	0	0.008291	0	0
HOXD10	3236	broad.mit.edu	37	2	176982161	176982161	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:176982161G>T	uc002ukj.2	+	1	670	c.600G>T	c.(598-600)AAG>AAT	p.K200N		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	200						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		TGGAAAAGAAGATGAACGAGC	0.642													9	37					0.000274275	0.000299813	0.004482	1	0
PDE11A	50940	broad.mit.edu	37	2	178936654	178936654	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:178936654T>C	uc002ulq.2	-	1	829	c.511A>G	c.(511-513)ATT>GTT	p.I171V	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	171					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			GCACTGAGAATATGGGCTGTG	0.567									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				27	27					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179404460	179404460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179404460C>T	uc010zfg.1	-	301	90852	c.90628G>A	c.(90628-90630)GAA>AAA	p.E30210K	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E23905K|TTN_uc010zfi.1_Missense_Mutation_p.E23838K|TTN_uc010zfj.1_Missense_Mutation_p.E23713K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31137							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTTATTTTCCAGAACCAGG	0.463													30	37					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179425011	179425011	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179425011C>T	uc010zfg.1	-	275	78368	c.78144G>A	c.(78142-78144)CGG>CGA	p.R26048R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R19743R|TTN_uc010zfi.1_Silent_p.R19676R|TTN_uc010zfj.1_Silent_p.R19551R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26975							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACATCCTTCCCGAAGTCCTG	0.398													37	36					0	0	0.007835	0	0
TTN	7273	broad.mit.edu	37	2	179425534	179425534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179425534G>A	uc010zfg.1	-	275	77845	c.77621C>T	c.(77620-77622)GCC>GTC	p.A25874V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A19569V|TTN_uc010zfi.1_Missense_Mutation_p.A19502V|TTN_uc010zfj.1_Missense_Mutation_p.A19377V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26801							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAATTAACGGCCACAGACCG	0.458													10	35					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179438459	179438459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179438459C>T	uc010zfg.1	-	275	64920	c.64696G>A	c.(64696-64698)GAA>AAA	p.E21566K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E15261K|TTN_uc010zfi.1_Missense_Mutation_p.E15194K|TTN_uc010zfj.1_Missense_Mutation_p.E15069K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22493							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGTCACTTCAGTTACAGCC	0.443													54	52					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179440123	179440123	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179440123C>T	uc010zfg.1	-	275	63256	c.63032G>A	c.(63031-63033)TGG>TAG	p.W21011*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W14706*|TTN_uc010zfi.1_Nonsense_Mutation_p.W14639*|TTN_uc010zfj.1_Nonsense_Mutation_p.W14514*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21938							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGTGGGTCCACTGGTCAGA	0.512													20	67					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179451330	179451330	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179451330T>A	uc010zfg.1	-	257	56818	c.56594A>T	c.(56593-56595)GAA>GTA	p.E18865V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E12560V|TTN_uc010zfi.1_Missense_Mutation_p.E12493V|TTN_uc010zfj.1_Missense_Mutation_p.E12368V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19792							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTTTCCTTCCTTTAGGCC	0.453													42	52					0	0	0.008740	0	0
TTN	7273	broad.mit.edu	37	2	179454575	179454575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179454575C>T	uc010zfg.1	-	253	54397	c.54173G>A	c.(54172-54174)CGA>CAA	p.R18058Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R11753Q|TTN_uc010zfi.1_Missense_Mutation_p.R11686Q|TTN_uc010zfj.1_Missense_Mutation_p.R11561Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18985							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGATTAATCGTTTAGTGAC	0.398													51	68					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179472736	179472736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179472736G>A	uc010zfg.1	-	225	45298	c.45074C>T	c.(45073-45075)CCA>CTA	p.P15025L	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P8720L|TTN_uc010zfi.1_Missense_Mutation_p.P8653L|TTN_uc010zfj.1_Missense_Mutation_p.P8528L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15952							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTGAAAGCTGGGGGTTCCCA	0.448													10	28					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179484483	179484483	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179484483G>A	uc010zfg.1	-	199	39081	c.38857C>T	c.(38857-38859)CAG>TAG	p.Q12953*	TTN_uc010zfh.1_Nonsense_Mutation_p.Q6648*|TTN_uc010zfi.1_Nonsense_Mutation_p.Q6581*|TTN_uc010zfj.1_Nonsense_Mutation_p.Q6456*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13880							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTATCACCCTGGACAACAACC	0.403													76	108					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179593061	179593061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179593061G>A	uc010zfg.1	-	64	15982	c.15758C>T	c.(15757-15759)TCT>TTT	p.S5253F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S1914F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6180							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATATGAATAGAAGAGCCCAG	0.368													4	17					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179595421	179595421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179595421G>A	uc010zfg.1	-	58	14331	c.14107C>T	c.(14107-14109)CCC>TCC	p.P4703S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P1364S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5630							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGCTTATGGGATGTGACCCA	0.373													36	52					0	0	0.004289	0	0
TTN	7273	broad.mit.edu	37	2	179595817	179595817	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179595817C>G	uc010zfg.1	-	57	14067	c.13843G>C	c.(13843-13845)GAT>CAT	p.D4615H	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1276H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5542							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTGGCCATCTTTAAACCAT	0.413													34	67					0	0	0.012213	0	0
TTN	7273	broad.mit.edu	37	2	179606297	179606297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179606297C>T	uc010zfh.1	-	46	11374	c.11150G>A	c.(11149-11151)GGA>GAA	p.G3717E	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.G3650E|TTN_uc010zfj.1_Missense_Mutation_p.G3525E|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3690							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTATACTCTCCCTCATCCTC	0.383													40	45					0	0	0.005524	0	0
TTN	7273	broad.mit.edu	37	2	179606574	179606574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179606574C>T	uc010zfh.1	-	46	11097	c.10873G>A	c.(10873-10875)GAA>AAA	p.E3625K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3558K|TTN_uc010zfj.1_Missense_Mutation_p.E3433K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAAGTGTTTCATTTATTTTA	0.363													9	8					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179611474	179611474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179611474C>T	uc002unb.2	-	46	15877	c.15653G>A	c.(15652-15654)CGA>CAA	p.R5218Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R5218C(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGATTTATTTCGATACCATTT	0.373													30	39					0	0	0.009535	0	0
TTN	7273	broad.mit.edu	37	2	179614349	179614349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179614349C>T	uc002unb.2	-	46	13002	c.12778G>A	c.(12778-12780)GAA>AAA	p.E4260K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAATATTTTCGAATTGACTA	0.373													13	40					0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179616309	179616309	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179616309A>G	uc002unb.2	-	46	11042	c.10818T>C	c.(10816-10818)TAT>TAC	p.Y3606Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAATTCTAAATATTTCTCAT	0.388													51	81					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179616458	179616458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179616458C>T	uc002unb.2	-	46	10893	c.10669G>A	c.(10669-10671)GAT>AAT	p.D3557N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	3556							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTGTAAATCACTCTCAGCT	0.408													35	48					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179629520	179629520	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179629520A>G	uc010zfg.1	-	42	9946	c.9722T>C	c.(9721-9723)GTT>GCT	p.V3241A	TTN_uc010zfh.1_Missense_Mutation_p.V3195A|TTN_uc010zfi.1_Missense_Mutation_p.V3195A|TTN_uc010zfj.1_Missense_Mutation_p.V3195A|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Missense_Mutation_p.V3241A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3241							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCTGCAGAACTTGGGGCGG	0.483													43	51					0	0	0.013114	0	0
TTN	7273	broad.mit.edu	37	2	179635288	179635288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179635288C>T	uc010zfg.1	-	35	8455	c.8231G>A	c.(8230-8232)GGA>GAA	p.G2744E	TTN_uc010zfh.1_Missense_Mutation_p.G2698E|TTN_uc010zfi.1_Missense_Mutation_p.G2698E|TTN_uc010zfj.1_Missense_Mutation_p.G2698E|TTN_uc002unb.2_Missense_Mutation_p.G2744E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2744							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCACAACTCCATTTTTGAT	0.413													18	63					0	0	0.010504	0	0
TTN	7273	broad.mit.edu	37	2	179665398	179665398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179665398G>A	uc002und.2	-	4	532	c.307C>T	c.(307-309)CCA>TCA	p.P103S	TTN_uc010zfg.1_Missense_Mutation_p.P103S|TTN_uc010zfh.1_Missense_Mutation_p.P103S|TTN_uc010zfi.1_Missense_Mutation_p.P103S|TTN_uc010zfj.1_Missense_Mutation_p.P103S|TTN_uc002unb.2_Missense_Mutation_p.P103S			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	103							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTTGGGTGGTGCTGTCTCA	0.493													14	83					0	0	0.002450	0	0
CCDC141	285025	broad.mit.edu	37	2	179714883	179714883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:179714883C>T	uc002unf.1	-	11	1582	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	509							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TGTCCTTCTTCCAAACCTGGG	0.323													19	22					0	0	0.007413	0	0
ITGA4	3676	broad.mit.edu	37	2	182340013	182340013	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:182340013A>C	uc002unu.2	+	4	1317	c.554A>C	c.(553-555)CAA>CCA	p.Q185P	ITGA4_uc010zfl.1_Missense_Mutation_p.Q185P	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	185	FG-GAP 3.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	CCGTGTTATCAAGGTAAGGCA	0.353													51	51					0	0	0.014410	0	0
ITGA4	3676	broad.mit.edu	37	2	182340015	182340015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:182340015G>A	uc002unu.2	+	4	1319	c.556G>A	c.(556-558)GAT>AAT	p.D186N	ITGA4_uc010zfl.1_Missense_Mutation_p.D186N	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	186	FG-GAP 3.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GTGTTATCAAGGTAAGGCATG	0.358													51	51					0	0	0.014410	0	0
PDE1A	5136	broad.mit.edu	37	2	183070702	183070702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:183070702C>T	uc002uos.2	-	9	999	c.915G>A	c.(913-915)ATG>ATA	p.M305I	PDE1A_uc010zfp.1_Missense_Mutation_p.M201I|PDE1A_uc002uoq.1_Missense_Mutation_p.M305I|PDE1A_uc010zfq.1_Missense_Mutation_p.M305I|PDE1A_uc002uor.2_Missense_Mutation_p.M289I|PDE1A_uc002uou.2_Missense_Mutation_p.M271I	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	305	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TCAAGATATTCATTTCTTCTT	0.343													9	29					0	0	0.006214	0	0
DNAJC10	54431	broad.mit.edu	37	2	183623942	183623942	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:183623942C>T	uc002uow.1	+	21	2468	c.2053C>T	c.(2053-2055)CTA>TTA	p.L685L	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Silent_p.L639L|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	685	Thioredoxin 4.				apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TGAAAAAGTTCTACAAGGGAA	0.373													10	29					0	0	0.006214	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800779	185800779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:185800779C>T	uc002uph.2	+	4	1250	c.656C>T	c.(655-657)CCA>CTA	p.P219L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	219						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTTGCATTTCCAAAGAAAGCG	0.418													25	34					0	0	0.005443	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187712479	187712479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:187712479G>A	uc002upu.1	-	2	249	c.209C>T	c.(208-210)CCG>CTG	p.P70L		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	70	SWIM-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CCCTCCTTTCGGAAATGTGGA	0.348													29	55					0	0	0.013726	0	0
TFPI	7035	broad.mit.edu	37	2	188349701	188349701	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:188349701G>A	uc002upx.2	-	5	405	c.372C>T	c.(370-372)TTC>TTT	p.F124F	TFPI_uc002upy.2_Silent_p.F124F|TFPI_uc002upz.2_Silent_p.F120F|TFPI_uc002uqa.2_Silent_p.F124F|TFPI_uc002uqb.2_Silent_p.F124F	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	124					blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	CCAAAAAGCAGAAATCTGGCT	0.289													7	28					0	0	0.004482	0	0
COL3A1	1281	broad.mit.edu	37	2	189849944	189849944	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:189849944C>T	uc002uqj.1	+	3	421	c.304C>T	c.(304-306)CAA>TAA	p.Q102*		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	102					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TCCTAATGGTCAAGGACCTCA	0.348													23	30					0	0	0.012213	0	0
COL3A1	1281	broad.mit.edu	37	2	189869027	189869027	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:189869027G>A	uc002uqj.1	+	40	2985	c.2868G>A	c.(2866-2868)CGG>CGA	p.R956R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	956	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CTGGAGCACGGGGTCTTGCAG	0.507													12	15					0	0	0.001855	0	0
ASNSD1	54529	broad.mit.edu	37	2	190535413	190535413	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:190535413C>T	uc002uqt.2	+	6	2327	c.1893C>T	c.(1891-1893)TCC>TCT	p.S631S		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	631					asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			AAATCATGTCCTTAGAAAATC	0.289													20	26					0	0	0.010504	0	0
INPP1	3628	broad.mit.edu	37	2	191235713	191235713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:191235713C>T	uc002ury.3	+	7	1485	c.785C>T	c.(784-786)GCC>GTC	p.A262V	INPP1_uc010fsb.2_Missense_Mutation_p.A262V|INPP1_uc002urx.3_Missense_Mutation_p.A262V	NM_001128928	NP_001122400	P49441	INPP_HUMAN	inositol polyphosphate-1-phosphatase	262					signal transduction		inositol-1,4-bisphosphate 1-phosphatase activity|metal ion binding			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.000286)|Epithelial(96;0.0186)|all cancers(119;0.057)		Lithium(DB01356)	AGTTTTTCAGCCGTAATTAGT	0.478													52	76					0	0	0.014410	0	0
STAT4	6775	broad.mit.edu	37	2	191897726	191897726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:191897726C>T	uc002usm.1	-	21	2256	c.2002G>A	c.(2002-2004)GAC>AAC	p.D668N	STAT4_uc002usn.1_Missense_Mutation_p.D668N|STAT4_uc010zgk.1_Missense_Mutation_p.D513N|STAT4_uc002uso.2_Missense_Mutation_p.D668N	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	668					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			AAGGCTTTGTCTTTGGGAATG	0.398													11	47					0	0	0.001855	0	0
SDPR	8436	broad.mit.edu	37	2	192701046	192701046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:192701046G>A	uc002utb.2	-	2	1211	c.881C>T	c.(880-882)CCC>CTC	p.P294L		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	294						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GAAAGTGAGGGGAGAAACCTT	0.468													44	121					0	0	0.014410	0	0
SDPR	8436	broad.mit.edu	37	2	192701381	192701381	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:192701381C>T	uc002utb.2	-	2	876	c.546G>A	c.(544-546)GGG>GGA	p.G182G		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	182						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GCTCCTCCTTCCCTTCCACGG	0.522													9	40					0	0	0.008291	0	0
DNAH7	56171	broad.mit.edu	37	2	196636518	196636518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:196636518C>T	uc002utj.3	-	61	11400	c.11299G>A	c.(11299-11301)GAG>AAG	p.E3767K	DNAH7_uc002uti.3_Missense_Mutation_p.E250K	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3767					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATGGCAGCCTCGATGTCGAAG	0.453													37	122					0	0	0.004289	0	0
DNAH7	56171	broad.mit.edu	37	2	196746621	196746621	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:196746621C>T	uc002utj.3	-	36	5960	c.5859G>A	c.(5857-5859)CTG>CTA	p.L1953L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1953	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GAATTGTGTCCAGAGTTGGCA	0.373													43	49					0	0	0.008740	0	0
DNAH7	56171	broad.mit.edu	37	2	196749452	196749452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:196749452G>A	uc002utj.3	-	35	5721	c.5620C>T	c.(5620-5622)CGA>TGA	p.R1874*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1874					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTAGTTCTCGAAGAATCTTA	0.383													11	44					0	0	0.008291	0	0
DNAH7	56171	broad.mit.edu	37	2	196822162	196822162	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:196822162C>T	uc002utj.3	-	19	3002	c.2901G>A	c.(2899-2901)GAG>GAA	p.E967E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	967	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GGAGCTTGCCCTCCCATTCTC	0.453													4	16					0	0	0.000602	0	0
CCDC150	284992	broad.mit.edu	37	2	197586255	197586255	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:197586255C>T	uc002utp.1	+	21	2404	c.2269C>T	c.(2269-2271)CTA>TTA	p.L757L	CCDC150_uc010zgs.1_Silent_p.L404L|CCDC150_uc010zgt.1_Silent_p.L174L|CCDC150_uc002utq.1_Silent_p.L72L|CCDC150_uc002utr.1_Silent_p.L72L	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	757	Potential.										0						GATTGAATCTCTACAAAAAGC	0.388													4	10					0	0	0.009096	0	0
SATB2	23314	broad.mit.edu	37	2	200137114	200137114	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:200137114C>T	uc002uuy.1	-	11	2839	c.2022G>A	c.(2020-2022)GGG>GGA	p.G674G	SATB2_uc010fsq.1_Silent_p.G556G|SATB2_uc002uuz.1_Silent_p.G674G|SATB2_uc002uva.1_Silent_p.G674G	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	674	Homeobox.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTTCAGCTTCCCGTGGTGCT	0.577													65	51					0	0	0.014410	0	0
MPP4	58538	broad.mit.edu	37	2	202545643	202545643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:202545643C>T	uc002uyk.3	-	10	1055	c.847G>A	c.(847-849)GAT>AAT	p.D283N	MPP4_uc010ftj.2_Missense_Mutation_p.D283N|MPP4_uc010zhq.1_Missense_Mutation_p.D283N|MPP4_uc010zhr.1_Missense_Mutation_p.D283N|MPP4_uc010zhs.1_Missense_Mutation_p.D239N|MPP4_uc002uyj.3_Missense_Mutation_p.D239N|MPP4_uc010zht.1_Missense_Mutation_p.D256N|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.D270N|MPP4_uc002uym.1_Missense_Mutation_p.D252N|MPP4_uc002uyn.2_Missense_Mutation_p.D239N	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	283	SH3.					cytoplasm	protein binding				0						CAGAGGGCATCATTCTGGTCC	0.567											OREG0015145	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	16					0	0	0.000602	0	0
ALS2	57679	broad.mit.edu	37	2	202632042	202632042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:202632042G>A	uc002uyo.2	-	3	441	c.85C>T	c.(85-87)CCC>TCC	p.P29S	ALS2_uc002uyp.3_Missense_Mutation_p.P29S|ALS2_uc002uyq.2_Missense_Mutation_p.P29S|ALS2_uc002uyr.2_Missense_Mutation_p.P29S	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	29					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity	p.P29P(1)		skin(5)|lung(1)|breast(1)	7						GGTGTTATGGGAAAGGATCCT	0.468													12	23					0	0	0.001855	0	0
FAM117B	150864	broad.mit.edu	37	2	203560658	203560658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:203560658C>T	uc010zhx.1	+	2	666	c.656C>T	c.(655-657)TCC>TTC	p.S219F	FAM117B_uc010zhw.1_Missense_Mutation_p.S219F	NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	219										ovary(1)	1						CGACGCACTTCCTCCCTGGAT	0.468													126	135					0	0	0.014410	0	0
NBEAL1	65065	broad.mit.edu	37	2	204034557	204034557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:204034557G>A	uc002uzt.3	+	38	6331	c.5998G>A	c.(5998-6000)GCA>ACA	p.A2000T	NBEAL1_uc002uzs.3_Missense_Mutation_p.A710T	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2000	BEACH.						binding			ovary(1)|skin(1)	2						GTTATTCAAAGCATCAGGATT	0.338													77	251					0	0	0.014410	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174320	207174320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:207174320C>T	uc002vbp.2	+	5	5318	c.5068C>T	c.(5068-5070)CGG>TGG	p.R1690W		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1690							nucleic acid binding|zinc ion binding			ovary(3)	3						AGCCAGTCTTCGGAAGGATCC	0.458													12	41					0	0	0.010729	0	0
CRYGA	1418	broad.mit.edu	37	2	209025546	209025546	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:209025546C>T	uc002vcq.3	-	3	524	c.507G>A	c.(505-507)CGG>CGA	p.R169R		NM_014617	NP_055432	P11844	CRGA_HUMAN	crystallin, gamma A	169	Beta/gamma crystallin 'Greek key' 4.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.067)|LUSC - Lung squamous cell carcinoma(261;0.0708)|Lung(261;0.135)		AATCGGTGACCCGTCTCAAAG	0.517													26	54					0	0	0.004656	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209218643	209218643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:209218643C>T	uc002vcz.2	+	40	6024	c.5866C>T	c.(5866-5868)CTT>TTT	p.L1956F		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1956	Catalytic.|PIPK.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GAAGGGCTCTCTTAGGAATCG	0.353													27	34					0	0	0.005443	0	0
PTH2R	5746	broad.mit.edu	37	2	209345797	209345797	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:209345797G>A	uc002vdb.2	+	10	1197	c.984G>A	c.(982-984)CTG>CTA	p.L328L	PTH2R_uc010zjb.1_Silent_p.L339L	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	328	Helical; Name=5; (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TTTTTCAGCTGAATTTTATTC	0.303													11	14					0	0	0.010729	0	0
CPS1	1373	broad.mit.edu	37	2	211471586	211471586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:211471586C>T	uc002vee.3	+	18	2245	c.2113C>T	c.(2113-2115)CCT>TCT	p.P705S	CPS1_uc010fur.2_Missense_Mutation_p.P711S|CPS1_uc010fus.2_Missense_Mutation_p.P254S	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	705	ATP-grasp 1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TGCCCTTCATCCTACCTCAAT	0.468													8	43					0	0	0.003080	0	0
ERBB4	2066	broad.mit.edu	37	2	212248412	212248412	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:212248412G>A	uc002veg.1	-	28	3953	c.3855C>T	c.(3853-3855)CTC>CTT	p.L1285L	ERBB4_uc002veh.1_Silent_p.L1269L|ERBB4_uc010zji.1_Silent_p.L1275L|ERBB4_uc010zjj.1_Silent_p.L1259L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1285	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		AGAACTCAGAGAGGTATTCAG	0.502										TSP Lung(8;0.080)			29	38					0	0	0.008361	0	0
ERBB4	2066	broad.mit.edu	37	2	212426789	212426789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:212426789C>T	uc002veg.1	-	20	2424	c.2326G>A	c.(2326-2328)GAT>AAT	p.D776N	ERBB4_uc002veh.1_Missense_Mutation_p.D776N|ERBB4_uc010zji.1_Missense_Mutation_p.D766N|ERBB4_uc010zjj.1_Missense_Mutation_p.D766N|ERBB4_uc010fut.1_Missense_Mutation_p.D776N	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	776	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGTGGATGATCCATACTTGCC	0.433										TSP Lung(8;0.080)			18	49					0	0	0.007413	0	0
ERBB4	2066	broad.mit.edu	37	2	212537981	212537981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:212537981C>T	uc002veg.1	-	14	1722	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K	ERBB4_uc002veh.1_Missense_Mutation_p.E542K|ERBB4_uc010zji.1_Missense_Mutation_p.E542K|ERBB4_uc010zjj.1_Missense_Mutation_p.E542K|ERBB4_uc010fut.1_Missense_Mutation_p.E542K	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	542	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TCCCGAAATTCACTGTGAAAA	0.463										TSP Lung(8;0.080)			13	42					0	0	0.001855	0	0
ABCA12	26154	broad.mit.edu	37	2	215872517	215872517	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:215872517C>T	uc002vew.2	-	19	2746	c.2526G>A	c.(2524-2526)TGG>TGA	p.W842*	ABCA12_uc002vev.2_Nonsense_Mutation_p.W524*|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	842					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ACTTATCCATCCACTCTTGAG	0.388													34	25					0	0	0.013726	0	0
ABCA12	26154	broad.mit.edu	37	2	215928919	215928919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:215928919G>A	uc002vew.2	-	3	407	c.187C>T	c.(187-189)CCT>TCT	p.P63S	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	63					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CCAGTACTAGGAAGGTTTCGA	0.423													26	27					0	0	0.003954	0	0
TMEM169	92691	broad.mit.edu	37	2	216960723	216960723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:216960723C>T	uc010zjr.1	+	3	363	c.37C>T	c.(37-39)CTT>TTT	p.L13F	TMEM169_uc010zjs.1_Missense_Mutation_p.L13F|TMEM169_uc002vfw.2_Missense_Mutation_p.L13F|TMEM169_uc002vfv.3_Missense_Mutation_p.L13F	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	13	Extracellular (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAGGTCCAGCTTCCAAGCCC	0.527													34	40					0	0	0.013726	0	0
CXCR2	3579	broad.mit.edu	37	2	219000202	219000202	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219000202C>T	uc002vgz.1	+	4	903	c.678C>T	c.(676-678)ATC>ATT	p.I226I	CXCR2_uc002vha.1_Silent_p.I226I|CXCR2_uc002vhb.1_Silent_p.I226I	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	226	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						CACTGCTGATCATGCTGTTCT	0.567													41	115					0	0	0.010771	0	0
CXCR1	3577	broad.mit.edu	37	2	219029056	219029056	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219029056C>T	uc002vhc.2	-	2	998	c.879G>A	c.(877-879)CTG>CTA	p.L293L		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	293	Helical; Name=7; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						GGAGAAATCCCAGAATCTCAG	0.567													29	43					0	0	0.008361	0	0
SLC11A1	6556	broad.mit.edu	37	2	219254628	219254628	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219254628C>T	uc002vhv.2	+	9	1171	c.831C>T	c.(829-831)ATC>ATT	p.I277I	SLC11A1_uc010fvp.1_Silent_p.I277I|SLC11A1_uc010fvq.1_Silent_p.I210I|SLC11A1_uc010zkc.1_Silent_p.I210I|SLC11A1_uc002vhu.1_Silent_p.I72I|SLC11A1_uc002vhw.2_Silent_p.I159I|SLC11A1_uc010fvr.2_Silent_p.I72I	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	277	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAGCAGACATCAGAGAAGCCA	0.557													9	27					0	0	0.004482	0	0
CTDSP1	58190	broad.mit.edu	37	2	219266430	219266430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219266430C>T	uc002vhy.2	+	2	547	c.211C>T	c.(211-213)CCT>TCT	p.P71S	CTDSP1_uc002vhx.2_Missense_Mutation_p.P71S|CTDSP1_uc002vhz.2_5'Flank|uc010zkd.1_5'Flank|MIR26B_hsa-mir-26b|MI0000084_5'Flank	NM_021198	NP_067021	Q9GZU7	CTDS1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	71					protein dephosphorylation|regulation of transcription from RNA polymerase II promoter	nucleus	CTD phosphatase activity|metal ion binding|protein binding			ovary(1)	1		Renal(207;0.0915)		Epithelial(149;9.96e-07)|all cancers(144;0.00017)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGCGCCATCCCTAAGGTGCG	0.642													5	15					0	0	0.001168	0	0
MIR26B	407017	broad.mit.edu	37	2	219267437	219267437	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219267437G>A	hsa-mir-26b|MI0000084	+			c.69G>A			CTDSP1_uc002vhy.2_Intron|CTDSP1_uc002vhx.2_Intron|CTDSP1_uc002vhz.2_Intron|uc010zkd.1_RNA																	0						TACTTGGCTCGGGGACCGGTG	0.627													3	11					0	0	0.009096	0	0
ZNF142	7701	broad.mit.edu	37	2	219509210	219509210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219509210C>T	uc002vin.2	-	8	2465	c.2029G>A	c.(2029-2031)GGT>AGT	p.G677S	ZNF142_uc002vil.2_Missense_Mutation_p.G638S|ZNF142_uc010fvt.2_Missense_Mutation_p.G514S|ZNF142_uc002vim.2_Missense_Mutation_p.G514S	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	677					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CCCAGGTCACCCCCATGGGGA	0.637													19	34					0	0	0.010504	0	0
PRKAG3	53632	broad.mit.edu	37	2	219695545	219695545	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219695545C>T	uc002vjb.1	-	3	172	c.153G>A	c.(151-153)GGG>GGA	p.G51G	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Silent_p.G51G|PRKAG3_uc010zko.1_Silent_p.G51G	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	51					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCTCCGTTTCCCACGGATTC	0.587													48	54					0	0	0.014410	0	0
CCDC108	255101	broad.mit.edu	37	2	219895915	219895915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219895915G>A	uc002vjl.1	-	8	1012	c.928C>T	c.(928-930)CTT>TTT	p.L310F	CCDC108_uc010fwa.1_5'Flank|CCDC108_uc010zkp.1_Missense_Mutation_p.L299F|CCDC108_uc010zkq.1_Missense_Mutation_p.L245F	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	310						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACGGCTGTAAGGGGCTGAAAG	0.652													5	21					0	0	0.001168	0	0
IHH	3549	broad.mit.edu	37	2	219920581	219920581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:219920581G>A	uc002vjo.1	-	3	584	c.584C>T	c.(583-585)TCG>TTG	p.S195L		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	195					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTGCGGCCGAGTGCTCTGT	0.667													8	10					0	0	0.004482	0	0
FAM134A	79137	broad.mit.edu	37	2	220047130	220047130	+	Missense_Mutation	SNP	C	T	T	rs145044869		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:220047130C>T	uc002vjw.3	+	9	1547	c.1411C>T	c.(1411-1413)CCC>TCC	p.P471S	FAM134A_uc010fwc.2_Missense_Mutation_p.P264S|FAM134A_uc002vjx.2_Intron	NM_024293	NP_077269	Q8NC44	F134A_HUMAN	hypothetical protein LOC79137	471						endoplasmic reticulum|integral to membrane				ovary(1)|central_nervous_system(1)	2		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCACCTGTTCCCCAGGACTC	0.617													33	42					0	0	0.003755	0	0
TUBA4A	7277	broad.mit.edu	37	2	220115861	220115861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:220115861G>A	uc002vkt.1	-	4	618	c.560C>T	c.(559-561)TCT>TTT	p.S187F	TUBA4A_uc010zkz.1_Missense_Mutation_p.S172F|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	187					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGTCAGGATAGAGTTGTAGGG	0.552													40	63					0	0	0.008740	0	0
SPEG	10290	broad.mit.edu	37	2	220334094	220334094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:220334094G>A	uc010fwg.2	+	13	3708	c.3708G>A	c.(3706-3708)ATG>ATA	p.M1236I		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1236	Ig-like 6.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		ACCGGCGCATGACACAGTGTA	0.642													5	16					0	0	0.000602	0	0
SPEG	10290	broad.mit.edu	37	2	220338616	220338616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:220338616G>A	uc010fwg.2	+	18	4438	c.4438G>A	c.(4438-4440)GAG>AAG	p.E1480K		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1480	Ig-like 7.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGTCACATTGGAGCTGGCAGG	0.637													7	54					0	0	0.001984	0	0
SLC4A3	6508	broad.mit.edu	37	2	220498006	220498006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:220498006G>A	uc002vmp.3	+	10	1557	c.1288G>A	c.(1288-1290)GAT>AAT	p.D430N	SLC4A3_uc002vmo.3_Missense_Mutation_p.D457N|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	430	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCATCCCAACGATGACAAGGA	0.582													17	61					0	0	0.010504	0	0
EPHA4	2043	broad.mit.edu	37	2	222294725	222294725	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:222294725G>A	uc002vmq.2	-	15	2685	c.2643C>T	c.(2641-2643)CTC>CTT	p.L881L	EPHA4_uc002vmr.2_Silent_p.L881L|EPHA4_uc010zlm.1_Silent_p.L822L|EPHA4_uc010zln.1_Silent_p.L881L	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	881	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GGTTGCGGATGAGTTTGTCCA	0.512													71	87					0	0	0.014410	0	0
KCNE4	23704	broad.mit.edu	37	2	223918013	223918013	+	Silent	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:223918013C>A	uc002vnl.3	+	2	619	c.465C>A	c.(463-465)CTC>CTA	p.L155L		NM_080671	NP_542402	Q8WWG9	KCNE4_HUMAN	potassium voltage-gated channel, Isk-related	155	Cytoplasmic (Potential).					integral to membrane	voltage-gated potassium channel activity			ovary(1)	1		Renal(207;0.0183)|Lung NSC(271;0.137)|all_lung(227;0.175)		Epithelial(121;4.48e-11)|all cancers(144;2.88e-08)|Lung(261;0.00688)|LUSC - Lung squamous cell carcinoma(224;0.008)		AGACGCCCCTCAACGAGAGCA	0.637													7	31					8.12818e-05	8.89862e-05	0.001984	1	0
KCNE4	23704	broad.mit.edu	37	2	223918037	223918037	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:223918037G>A	uc002vnl.3	+	2	643	c.489G>A	c.(487-489)TCG>TCA	p.S163S		NM_080671	NP_542402	Q8WWG9	KCNE4_HUMAN	potassium voltage-gated channel, Isk-related	163	Cytoplasmic (Potential).					integral to membrane	voltage-gated potassium channel activity			ovary(1)	1		Renal(207;0.0183)|Lung NSC(271;0.137)|all_lung(227;0.175)		Epithelial(121;4.48e-11)|all cancers(144;2.88e-08)|Lung(261;0.00688)|LUSC - Lung squamous cell carcinoma(224;0.008)		AAGGGTCCTCGGAGAACATCC	0.607													4	23					0	0	0.000602	0	0
SCG2	7857	broad.mit.edu	37	2	224462184	224462184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:224462184C>T	uc002vnm.2	-	2	1950	c.1817G>A	c.(1816-1818)AGG>AAG	p.R606K		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	606					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		AATATGCTCCCTTCCCTTTTC	0.423													8	88					0	0	0.004482	0	0
SCG2	7857	broad.mit.edu	37	2	224462859	224462859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:224462859G>A	uc002vnm.2	-	2	1275	c.1142C>T	c.(1141-1143)CCG>CTG	p.P381L		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	381					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		CTCCCGCTCCGGTTCCACTGA	0.468													8	51					0	0	0.004482	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447051	226447051	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:226447051C>T	uc002voe.2	+	4	1093	c.918C>T	c.(916-918)TTC>TTT	p.F306F	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.F76F	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	306										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		ACTTGGACTTCGCCAAGGCCT	0.587													11	48					0	0	0.008291	0	0
COL4A4	1286	broad.mit.edu	37	2	227886775	227886775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:227886775G>A	uc010zlt.1	-	43	4859	c.4205C>T	c.(4204-4206)CCC>CTC	p.P1402L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1402	Triple-helical region.		P -> S.		axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGGTCCTGAGGGGCCTCTCAT	0.488													69	97					0	0	0.014410	0	0
COL4A4	1286	broad.mit.edu	37	2	227896927	227896927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:227896927G>A	uc010zlt.1	-	39	4297	c.3643C>T	c.(3643-3645)CCT>TCT	p.P1215S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1215	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GGGCTCCCAGGGTCTCCTCTC	0.512													37	47					0	0	0.003755	0	0
COL4A4	1286	broad.mit.edu	37	2	227914842	227914842	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:227914842C>T	uc010zlt.1	-	34	3810	c.3156G>A	c.(3154-3156)GAG>GAA	p.E1052E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1052	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GAGAACCTGGCTCACCCTGAC	0.408													34	42					0	0	0.004878	0	0
COL4A4	1286	broad.mit.edu	37	2	227917128	227917128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:227917128C>T	uc010zlt.1	-	32	3515	c.2861G>A	c.(2860-2862)GGA>GAA	p.G954E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	954	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCTATGGCTCCTATGGATAT	0.423													23	33					0	0	0.002780	0	0
COL4A4	1286	broad.mit.edu	37	2	227942760	227942760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:227942760C>T	uc010zlt.1	-	25	2491	c.1837G>A	c.(1837-1839)GGA>AGA	p.G613R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	613	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCAGGAAATCCTTTACCACCT	0.557													5	39					0	0	0.000602	0	0
COL4A4	1286	broad.mit.edu	37	2	227945175	227945175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:227945175C>T	uc010zlt.1	-	24	2441	c.1787G>A	c.(1786-1788)GGG>GAG	p.G596E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	596	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCTGGATCCCCTTTTTCTCC	0.463													54	76					0	0	0.014410	0	0
WDR69	164781	broad.mit.edu	37	2	228783512	228783512	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:228783512C>T	uc002vpn.1	+	11	1069	c.990C>T	c.(988-990)TTC>TTT	p.F330F	WDR69_uc010zlw.1_Silent_p.F315F|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	330	WD 6.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CAAGAATTTTCAGTGCTGCCA	0.343													17	25					0	0	0.008871	0	0
SPHKAP	80309	broad.mit.edu	37	2	228855733	228855733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:228855733C>T	uc002vpq.2	-	11	4989	c.4942G>A	c.(4942-4944)GAA>AAA	p.E1648K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1619K|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1648						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ATTCTGTTTTCCTGAGATTTC	0.463													14	17					0	0	0.004007	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881959	228881959	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:228881959C>A	uc002vpq.2	-	7	3658	c.3611G>T	c.(3610-3612)AGA>ATA	p.R1204I	SPHKAP_uc002vpp.2_Missense_Mutation_p.R1204I|SPHKAP_uc010zlx.1_Missense_Mutation_p.R1204I	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1204						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCTGCTGTCTCTTTCGATGTC	0.572													21	103					3.85864e-22	4.27819e-22	0.002780	1	0
SPHKAP	80309	broad.mit.edu	37	2	228886515	228886515	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:228886515C>T	uc002vpq.2	-	6	656	c.609G>A	c.(607-609)ACG>ACA	p.T203T	SPHKAP_uc002vpp.2_Silent_p.T203T|SPHKAP_uc010zlx.1_Silent_p.T203T	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	203						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGGAACAGTTCGTGTCATCCT	0.463													24	38					0	0	0.003330	0	0
SPHKAP	80309	broad.mit.edu	37	2	228890178	228890178	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:228890178C>A	uc002vpq.2	-	5	420	c.373G>T	c.(373-375)GAA>TAA	p.E125*	SPHKAP_uc002vpp.2_Nonsense_Mutation_p.E125*|SPHKAP_uc010zlx.1_Nonsense_Mutation_p.E125*	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	125						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ATTTCATTTTCTTTTGGTTGT	0.363													18	43					1.33834e-09	1.47469e-09	0.007413	1	0
SLC16A14	151473	broad.mit.edu	37	2	230911331	230911331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:230911331C>T	uc002vqd.1	-	4	874	c.511G>A	c.(511-513)GGT>AGT	p.G171S	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.G171S|SLC16A14_uc002vqf.2_Missense_Mutation_p.G171S	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	171	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		AGGAACGTACCGAATCCGGTC	0.597													29	38					0	0	0.003271	0	0
SP140	11262	broad.mit.edu	37	2	231112730	231112730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:231112730G>A	uc002vql.2	+	8	957	c.842G>A	c.(841-843)AGA>AAA	p.R281K	SP140_uc010zma.1_Intron|SP140_uc002vqk.2_Missense_Mutation_p.R281K|SP140_uc002vqn.2_Intron|SP140_uc002vqm.2_Missense_Mutation_p.R255K|SP140_uc010fxl.2_Missense_Mutation_p.R281K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	281					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CCCAGAAAAAGAAACCAAGAC	0.493													25	33					0	0	0.002780	0	0
C2orf57	165100	broad.mit.edu	37	2	232458440	232458440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:232458440G>A	uc002vrz.2	+	1	829	c.778G>A	c.(778-780)GAC>AAC	p.D260N		NM_152614	NP_689827	Q53QW1	CB057_HUMAN	hypothetical protein LOC165100	260										ovary(1)	1		Renal(207;0.025)|all_hematologic(139;0.0735)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;1.33e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		AAGGCCCCTGGACTCCAGCCT	0.647													61	60					0	0	0.014410	0	0
ALPI	248	broad.mit.edu	37	2	233320917	233320917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:233320917G>A	uc002vst.3	+	1	85	c.8G>A	c.(7-9)GGG>GAG	p.G3E	ALPI_uc002vsu.3_5'UTR	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	3					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GACATGCAGGGGCCCTGGGTG	0.652													15	13					0	0	0.003163	0	0
ALPI	248	broad.mit.edu	37	2	233322730	233322730	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:233322730G>A	uc002vst.3	+	8	956	c.879G>A	c.(877-879)ACG>ACA	p.T293T	ALPI_uc002vsu.3_Silent_p.T204T	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	293					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCGGAGACACGAAATATGAGA	0.622													28	28					0	0	0.006320	0	0
NEU2	4759	broad.mit.edu	37	2	233899191	233899191	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:233899191G>A	uc010zmn.1	+	2	567	c.567G>A	c.(565-567)AGG>AGA	p.R189R		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	189							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CCATCCAAAGGCCGATCCCCT	0.662													34	30					0	0	0.003755	0	0
INPP5D	3635	broad.mit.edu	37	2	234098535	234098535	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:234098535C>T	uc010zmo.1	+	21	2551	c.2398C>T	c.(2398-2400)CAG>TAG	p.Q800*	INPP5D_uc010zmp.1_Nonsense_Mutation_p.Q799*	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	800					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CCTGCTAGACCAGCACATCCT	0.572													25	42					0	0	0.003954	0	0
INPP5D	3635	broad.mit.edu	37	2	234112976	234112976	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:234112976C>T	uc010zmo.1	+	25	3333	c.3180C>T	c.(3178-3180)ATC>ATT	p.I1060I	INPP5D_uc010zmp.1_Silent_p.I1059I	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1060	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CGCCCAGCATCGTGCTCACCA	0.687													9	30					0	0	0.008291	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545462	234545462	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:234545462G>A	uc002vur.2	+	1	340	c.294G>A	c.(292-294)TGG>TGA	p.W98*	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Nonsense_Mutation_p.W98*	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	98					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATGCTCAATGGAAAGCACAGG	0.398													20	83					0	0	0.007413	0	0
UGT1A3	54659	broad.mit.edu	37	2	234637957	234637957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:234637957C>T	uc002vuy.2	+	1	185	c.185C>T	c.(184-186)ACC>ATC	p.T62I	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.T62I	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	62					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GTGGTCCTCACCCCAGAGGTG	0.557													21	67					0	0	0.010504	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652226	234652226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:234652226C>T	uc002vuz.2	-	1	436	c.337G>A	c.(337-339)GAC>AAC	p.D113N	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	113					protein folding		heat shock protein binding|unfolded protein binding				0						CCCAAGAGGTCAAAGGAGAAT	0.597													17	49					0	0	0.004990	0	0
COL6A3	1293	broad.mit.edu	37	2	238259801	238259801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:238259801C>T	uc002vwl.2	-	27	7073	c.6788G>A	c.(6787-6789)CGA>CAA	p.R2263Q	COL6A3_uc002vwo.2_Missense_Mutation_p.R2057Q|COL6A3_uc010znj.1_Missense_Mutation_p.R1656Q|COL6A3_uc002vwp.1_Missense_Mutation_p.R84Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2263	Triple-helical region.|Collagen-like 4.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGTTCTGCCTCGTTCTCCAGG	0.567													28	33					0	0	0.010818	0	0
COL6A3	1293	broad.mit.edu	37	2	238285955	238285955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:238285955C>T	uc002vwl.2	-	7	2815	c.2530G>A	c.(2530-2532)GGC>AGC	p.G844S	COL6A3_uc002vwo.2_Missense_Mutation_p.G638S|COL6A3_uc010znj.1_Missense_Mutation_p.G237S|COL6A3_uc002vwq.2_Missense_Mutation_p.G638S|COL6A3_uc002vwr.2_Missense_Mutation_p.G437S|COL6A3_uc010znk.1_Missense_Mutation_p.G644S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	844	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TTGGCTGAGCCGTCAAAGAGG	0.498													9	56					0	0	0.006214	0	0
ESPNL	339768	broad.mit.edu	37	2	239016574	239016574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:239016574G>A	uc002vxq.3	+	4	925	c.815G>A	c.(814-816)GGG>GAG	p.G272E	ESPNL_uc010fyw.2_Missense_Mutation_p.G12E	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	272	ANK 9.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		TCCTGGGGTGGGACCCCCCTC	0.557													5	21					0	0	0.000602	0	0
HDAC4	9759	broad.mit.edu	37	2	240085518	240085518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:240085518C>T	uc002vyk.3	-	6	1384	c.592G>A	c.(592-594)GAC>AAC	p.D198N	HDAC4_uc010fyz.1_Missense_Mutation_p.D193N|HDAC4_uc010zoa.1_Missense_Mutation_p.D193N|HDAC4_uc010fza.2_Missense_Mutation_p.D198N|HDAC4_uc010fyy.2_Missense_Mutation_p.D150N|HDAC4_uc010znz.1_Missense_Mutation_p.D81N	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	198	Interaction with MEF2A.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		TAGCGAGGGTCGCTGGAAATG	0.562													20	69					0	0	0.014323	0	0
OR6B3	150681	broad.mit.edu	37	2	240984548	240984548	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:240984548C>T	uc010zoe.1	-	1	942	c.942G>A	c.(940-942)GGG>GGA	p.G314G	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		TAGAAAGCCTCCCCTCTACGG	0.458													42	113					0	0	0.008740	0	0
ANKMY1	51281	broad.mit.edu	37	2	241465154	241465154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:241465154G>A	uc002vyz.1	-	6	1245	c.1016C>T	c.(1015-1017)CCC>CTC	p.P339L	ANKMY1_uc002vza.1_Missense_Mutation_p.P198L|ANKMY1_uc010fzd.1_Missense_Mutation_p.P428L|ANKMY1_uc002vzb.1_Missense_Mutation_p.P198L|ANKMY1_uc002vzc.1_Missense_Mutation_p.P198L|ANKMY1_uc002vzd.1_Missense_Mutation_p.P198L|ANKMY1_uc010fze.1_Missense_Mutation_p.P8L|ANKMY1_uc002vze.2_Missense_Mutation_p.P100L	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	339							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		GGACTGGGCGGGGTAGTGGAG	0.577													11	39					0	0	0.010729	0	0
CAPN10	11132	broad.mit.edu	37	2	241534054	241534054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:241534054C>T	uc002vzk.1	+	6	1109	c.925C>T	c.(925-927)CTC>TTC	p.L309F	CAPN10_uc010zoh.1_Missense_Mutation_p.L309F|CAPN10_uc002vzl.1_Missense_Mutation_p.L309F|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Missense_Mutation_p.L181F|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	309	Calpain catalytic.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		GGAGGAGTTCCTCAGGGAGTT	0.637													63	46					0	0	0.014410	0	0
AGXT	189	broad.mit.edu	37	2	241813456	241813456	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:241813456C>T	uc002waa.3	+	6	778	c.657C>T	c.(655-657)CTC>CTT	p.L219L	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	219					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	GGACCTCGCTCATCTCCTTCA	0.647													8	39					0	0	0.008291	0	0
PASK	23178	broad.mit.edu	37	2	242072304	242072304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:242072304G>A	uc002wao.1	-	9	1540	c.1448C>T	c.(1447-1449)CCT>CTT	p.P483L	PASK_uc010zol.1_Missense_Mutation_p.P297L|PASK_uc010zom.1_Missense_Mutation_p.P448L|PASK_uc010fzl.1_Missense_Mutation_p.P483L|PASK_uc010zon.1_Missense_Mutation_p.P264L|PASK_uc002wap.2_Missense_Mutation_p.P26L|PASK_uc002waq.2_Missense_Mutation_p.P483L	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	483					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		AGCAGGCTGAGGTGAGAGGCA	0.527													11	36					0	0	0.010729	0	0
ATG4B	23192	broad.mit.edu	37	2	242590434	242590435	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:242590434_242590435CC>TT	uc002wbv.2	+	2	123_124	c.20_21CC>TT	c.(19-21)ACC>ATT	p.T7I	ATG4B_uc002wbu.2_5'UTR|ATG4B_uc002wbw.2_Missense_Mutation_p.T7I|ATG4B_uc010zox.1_5'UTR|ATG4B_uc010zoy.1_5'UTR|ATG4B_uc010fzp.2_Missense_Mutation_p.T7I|ATG4B_uc010zoz.1_5'Flank	NM_013325	NP_037457	Q9Y4P1	ATG4B_HUMAN	APG4 autophagy 4 homolog B isoform a	7					autophagic vacuole assembly|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.44e-33)|all cancers(36;5.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.75e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0848)		GCTACTCTGACCTACGACACTC	0.426													3	7					0	0	0.004672	0	0
SIRPG	55423	broad.mit.edu	37	20	1638336	1638336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:1638336G>A	uc002wfm.1	-	1	90	c.25C>T	c.(25-27)CAT>TAT	p.H9Y	SIRPG_uc002wfn.1_Missense_Mutation_p.H9Y|SIRPG_uc002wfo.1_Missense_Mutation_p.H9Y	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	9					blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						CCAGGAGGATGGGGCCAGGAG	0.557													21	49					0	0	0.002780	0	0
TGM6	343641	broad.mit.edu	37	20	2378637	2378637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:2378637C>T	uc002wfy.1	+	5	678	c.617C>T	c.(616-618)ACC>ATC	p.T206I	TGM6_uc010gal.1_Missense_Mutation_p.T206I	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	206					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	AACCCAGCCACCGACGTGTCC	0.577													15	40					0	0	0.004007	0	0
SNRPB	6628	broad.mit.edu	37	20	2443294	2443294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:2443294G>A	uc002wfz.1	-	6	836	c.673C>T	c.(673-675)CCT>TCT	p.P225S	SNRPB_uc002wga.1_Missense_Mutation_p.P225S|SNRPB_uc010zpv.1_Missense_Mutation_p.P146S|SNRPB_uc002wgb.2_Missense_Mutation_p.P225S	NM_198216	NP_937859	P14678	RSMB_HUMAN	small nuclear ribonucleoprotein polypeptide B/B'	225	Repeat-rich region.|				histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|protein binding|RNA binding			ovary(1)	1						CGCATCCCAGGGGGAGGAGGC	0.572													45	59					0	0	0.014410	0	0
ATRN	8455	broad.mit.edu	37	20	3541349	3541349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:3541349G>A	uc002wim.2	+	8	1334	c.1244G>A	c.(1243-1245)GGG>GAG	p.G415E	ATRN_uc002wil.2_Missense_Mutation_p.G415E	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	415	Extracellular (Potential).|Kelch 2.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						GATTCAACTGGGAATGTGACC	0.353													9	7					0	0	0.008291	0	0
ATRN	8455	broad.mit.edu	37	20	3578606	3578606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:3578606C>T	uc002wim.2	+	22	3613	c.3523C>T	c.(3523-3525)CGC>TGC	p.R1175C	ATRN_uc002wil.2_Missense_Mutation_p.R1175C	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	1175	Extracellular (Potential).				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						GGAAGATGATCGCTATTACAC	0.318													52	123					0	0	0.014410	0	0
PROKR2	128674	broad.mit.edu	37	20	5282926	5282926	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:5282926G>A	uc010zqw.1	-	2	915	c.915C>T	c.(913-915)TTC>TTT	p.F305F	PROKR2_uc010zqx.1_Silent_p.F305F|PROKR2_uc010zqy.1_Silent_p.F305F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	305	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TTTCCTTCACGAACACAGTGG	0.537										HNSCC(71;0.22)			24	53					0	0	0.014323	0	0
PROKR2	128674	broad.mit.edu	37	20	5283145	5283145	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:5283145G>A	uc010zqw.1	-	2	696	c.696C>T	c.(694-696)TTC>TTT	p.F232F	PROKR2_uc010zqx.1_Silent_p.F232F|PROKR2_uc010zqy.1_Silent_p.F232F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	232	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CAGGGCCCACGAACTCGACAC	0.557										HNSCC(71;0.22)			35	73					0	0	0.004289	0	0
LRRN4	164312	broad.mit.edu	37	20	6022042	6022042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:6022042C>T	uc002wmo.2	-	5	2073	c.1849G>A	c.(1849-1851)GAG>AAG	p.E617K		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	617	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(3)	3						GCCCAGCCCTCCGCAGAGTAG	0.692													11	39					0	0	0.001855	0	0
FERMT1	55612	broad.mit.edu	37	20	6065719	6065719	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:6065719G>A	uc002wmr.2	-	12	2376	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S	FERMT1_uc002wmq.2_Silent_p.S82S|FERMT1_uc010gbt.2_Silent_p.S272S	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	529	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						GTACCTGTTTGGATTTGTGTC	0.353													32	40					0	0	0.009535	0	0
PLCB4	5332	broad.mit.edu	37	20	9402010	9402010	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:9402010T>C	uc002wnf.2	+	25	2321	c.2185T>C	c.(2185-2187)TTG>CTG	p.L729L	PLCB4_uc010gbw.1_Silent_p.L729L|PLCB4_uc010gbx.2_Silent_p.L741L|PLCB4_uc002wne.2_Silent_p.L729L|PLCB4_uc002wnh.2_Silent_p.L576L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	729	C2.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TATGTATGGGTTGCCCACTGA	0.408													33	41					0	0	0.004878	0	0
PAK7	57144	broad.mit.edu	37	20	9523338	9523338	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:9523338C>T	uc002wnl.2	-	10	2444	c.1899G>A	c.(1897-1899)GTG>GTA	p.V633V	PAK7_uc002wnk.2_Silent_p.V633V|PAK7_uc002wnj.2_Silent_p.V633V|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	633	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TCATTTCTATCACCATGATCC	0.527													64	77					0	0	0.014410	0	0
PAK7	57144	broad.mit.edu	37	20	9546725	9546725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:9546725G>A	uc002wnl.2	-	6	1842	c.1297C>T	c.(1297-1299)CGG>TGG	p.R433W	PAK7_uc002wnk.2_Missense_Mutation_p.R433W|PAK7_uc002wnj.2_Missense_Mutation_p.R433W|PAK7_uc010gby.1_Missense_Mutation_p.R433W	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	433	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AGGGCCGCCCGAAACTGTTCA	0.627													33	52					0	0	0.010818	0	0
JAG1	182	broad.mit.edu	37	20	10630183	10630183	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:10630183C>T	uc002wnw.2	-	10	1851	c.1335G>A	c.(1333-1335)CAG>CAA	p.Q445Q	JAG1_uc010gcd.1_Silent_p.Q3Q	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	445	EGF-like 6; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						TGTCACAATTCTGACCCATCC	0.468									Alagille_Syndrome				13	15					0	0	0.013537	0	0
C20orf79	140856	broad.mit.edu	37	20	18794489	18794489	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:18794489G>A	uc002wrk.2	+	1	120	c.30G>A	c.(28-30)AAG>AAA	p.K10K	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	10							sterol binding			skin(3)	3						ATCAACCCAAGATCAAAGCAG	0.517													20	40					0	0	0.014323	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20505050	20505050	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:20505050C>T	uc002wrz.2	-	30	4043	c.3900G>A	c.(3898-3900)AGG>AGA	p.R1300R	RALGAPA2_uc010gcx.2_Silent_p.R1004R|RALGAPA2_uc010zsg.1_Silent_p.R748R|RALGAPA2_uc002wsa.1_Silent_p.R72R	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1300					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GTAGACTCACCCTGTAGATAT	0.512													13	23					0	0	0.013537	0	0
CD93	22918	broad.mit.edu	37	20	23064978	23064979	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:23064978_23064979CC>TT	uc002wsv.2	-	1	1999_2000	c.1851_1852GG>AA	c.(1849-1854)AAGGAG>AAAAAG	p.E618K		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	618	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GGCTTCTTCTCCTTCTTCTCCT	0.594													57	110					0	0	0.004672	0	0
KIF3B	9371	broad.mit.edu	37	20	30898063	30898063	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:30898063C>T	uc002wxq.2	+	2	650	c.483C>T	c.(481-483)ACC>ACT	p.T161T	KIF3B_uc010ztv.1_Silent_p.T161T|KIF3B_uc010ztw.1_Silent_p.T161T	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	161	Kinesin-motor.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AGGATCAGACCAAAAGGCTTG	0.473													25	53					0	0	0.003330	0	0
ASXL1	171023	broad.mit.edu	37	20	31024661	31024661	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:31024661C>T	uc002wxs.2	+	12	4572	c.4146C>T	c.(4144-4146)GCC>GCT	p.A1382A	ASXL1_uc010geb.2_Silent_p.A1273A	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1382					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						AGGCAAATGCCGAGAACAGGA	0.527			F|N|Mis		MDS|CMML								34	78					0	0	0.013726	0	0
C20orf186	149954	broad.mit.edu	37	20	31671589	31671589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:31671589C>T	uc010zue.1	+	3	601	c.586C>T	c.(586-588)CTC>TTC	p.L196F		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	196	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						CGGAGGTGGTCTCCTTGGTGA	0.662													27	39					0	0	0.010818	0	0
PLUNC	51297	broad.mit.edu	37	20	31828038	31828038	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:31828038G>A	uc002wyv.2	+	5	499	c.429_splice	c.e5-1	p.T143_splice	PLUNC_uc002wyt.3_Splice_Site_p.T143_splice|PLUNC_uc002wyu.3_Splice_Site_p.T143_splice	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated						innate immune response	extracellular region	lipid binding				0						CTCCTTTGCAGGCCCCTGGTC	0.527													84	156					0	0	0.014410	0	0
NCOA6	23054	broad.mit.edu	37	20	33328842	33328842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:33328842G>A	uc002xav.2	-	12	7789	c.5218C>T	c.(5218-5220)CCT>TCT	p.P1740S	NCOA6_uc002xaw.2_Missense_Mutation_p.P1740S	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1740	EP300/CRSP3-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						AGCTGAACAGGGGTGGCTCGT	0.522													45	74					0	0	0.013114	0	0
NCOA6	23054	broad.mit.edu	37	20	33356387	33356387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:33356387C>T	uc002xav.2	-	6	2965	c.394G>A	c.(394-396)GAA>AAA	p.E132K	NCOA6_uc002xaw.2_Missense_Mutation_p.E132K|NCOA6_uc010gew.1_Missense_Mutation_p.E132K	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	132	TBP/GTF2A-binding region.|NCOA1-binding region.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						ATAGCACCTTCCCCTGAAAAT	0.393													28	75					0	0	0.008361	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33421435	33421435	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:33421435C>T	uc002xax.2	-	1		c.831G>A				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						ccatcttttccCAGGCAACTT	0.289													5	6					0	0	0.001168	0	0
GGT7	2686	broad.mit.edu	37	20	33442402	33442403	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:33442402_33442403GG>AA	uc002xay.2	-	10	1293_1294	c.1250_1251CC>TT	c.(1249-1251)GCC>GTT	p.A417V	GGT7_uc002xaz.1_Missense_Mutation_p.A434V	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	417	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						TGCTGGCCAGGGCTAATGCAAT	0.55													9	15					0	0	0.004672	0	0
MMP24	10893	broad.mit.edu	37	20	33834663	33834663	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:33834663C>T	uc002xbu.2	+	2	270	c.267C>T	c.(265-267)GGC>GGT	p.G89G	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	89	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			AGTCCTATGGCTATCTGCTTC	0.522													44	75					0	0	0.013114	0	0
MMP24	10893	broad.mit.edu	37	20	33855020	33855020	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:33855020A>T	uc002xbu.2	+	6	995	c.992A>T	c.(991-993)GAG>GTG	p.E331V	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	331	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CCCCCAGCCGAGCCTCTGGAG	0.662													6	8					0	0	0.001168	0	0
GDF5	8200	broad.mit.edu	37	20	34025399	34025399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:34025399G>A	uc002xck.1	-	1	629	c.310C>T	c.(310-312)CCT>TCT	p.P104S	GDF5_uc010gfc.1_Missense_Mutation_p.P104S|GDF5_uc010zvc.1_Missense_Mutation_p.P104S	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	104					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			TTGGGTTCAGGGCCGCCCGGT	0.632													19	72					0	0	0.008871	0	0
CEP250	11190	broad.mit.edu	37	20	34050232	34050232	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:34050232C>T	uc002xcm.2	+	5	711	c.40C>T	c.(40-42)CAG>TAG	p.Q14*	CEP250_uc010zve.1_5'UTR|CEP250_uc010gfe.1_RNA|CEP250_uc010zvd.1_RNA	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	14					centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CATGAAGCCCCAGTCACTGCA	0.592													3	9					0	0	0.009096	0	0
CEP250	11190	broad.mit.edu	37	20	34091199	34091199	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:34091199C>T	uc002xcm.2	+	31	5673	c.5002C>T	c.(5002-5004)CAG>TAG	p.Q1668*	CEP250_uc010zve.1_Nonsense_Mutation_p.Q1036*	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1668	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GGAGAGGATTCAGGTTCTCGA	0.572													71	115					0	0	0.014410	0	0
RBM12	10137	broad.mit.edu	37	20	34242055	34242055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:34242055G>A	uc002xdq.2	-	3	1422	c.1190C>T	c.(1189-1191)CCT>CTT	p.P397L	CPNE1_uc010zvj.1_5'Flank|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.P397L|RBM12_uc002xds.2_Missense_Mutation_p.P397L	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	397						nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			TTGTCCAGAAGGTCCCATATT	0.483											OREG0004044	type=REGULATORY REGION|Gene=CPNE1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	45	85					0	0	0.009718	0	0
C20orf117	140710	broad.mit.edu	37	20	35422871	35422872	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:35422871_35422872CC>TT	uc002xgd.1	-	14	3226_3227	c.2899_2900GG>AA	c.(2899-2901)GGG>AAG	p.G967K	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	967											0		Myeloproliferative disorder(115;0.00874)				CTCTGGATCCCCTGGCTCGGAG	0.614													29	55					0	0	0.004672	0	0
SAMHD1	25939	broad.mit.edu	37	20	35526902	35526902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:35526902G>A	uc002xgh.1	-	14	1679	c.1549C>T	c.(1549-1551)CAT>TAT	p.H517Y	SAMHD1_uc010gft.1_Intron	NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	517					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				AAGCTAACATGATCAATTGGA	0.353													36	81					0	0	0.006999	0	0
C20orf132	140699	broad.mit.edu	37	20	35749321	35749321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:35749321C>T	uc010zvu.1	-	18	2216	c.2125G>A	c.(2125-2127)GGA>AGA	p.G709R	C20orf132_uc002xgk.2_Missense_Mutation_p.G331R	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				AGAAATAGTCCCTGAAGATGG	0.433													14	42					0	0	0.004990	0	0
TGM2	7052	broad.mit.edu	37	20	36779353	36779353	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:36779353C>T	uc002xhr.2	-	4	640	c.540G>A	c.(538-540)TGG>TGA	p.W180*	TGM2_uc010zvx.1_Nonsense_Mutation_p.W99*|TGM2_uc010zvy.1_Nonsense_Mutation_p.W120*|TGM2_uc002xhs.1_Nonsense_Mutation_p.W156*|TGM2_uc002xht.2_Nonsense_Mutation_p.W180*|TGM2_uc002xhu.3_Nonsense_Mutation_p.W180*	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	180					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	GCCCAAAATTCCAAGGTATGT	0.582													62	92					0	0	0.014410	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869589	36869589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:36869589G>A	uc002xhy.1	-	3	1216	c.944C>T	c.(943-945)CCC>CTC	p.P315L	KIAA1755_uc002xhz.1_Missense_Mutation_p.P315L	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	315										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				TTGAAATAAGGGAGTTTCCTT	0.522													69	145					0	0	0.014410	0	0
LBP	3929	broad.mit.edu	37	20	36982741	36982742	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:36982741_36982742CC>TT	uc002xic.1	+	4	461_462	c.426_427CC>TT	c.(424-429)CTCCTG>CTTTTG	p.142_143LL>LL		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	142_143					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				CGGTCAACCTCCTGTTGGGCAG	0.569													28	33					0	0	0.004672	0	0
RALGAPB	57148	broad.mit.edu	37	20	37202877	37202877	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:37202877C>T	uc002xiw.2	+	29	4484	c.4227C>T	c.(4225-4227)GCC>GCT	p.A1409A	RALGAPB_uc002xix.2_Silent_p.A1406A|RALGAPB_uc002xiy.1_Intron|RALGAPB_uc002xiz.2_Silent_p.A1188A	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	1409					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						TTCAAGGAGCCACTGGAAAAT	0.383													35	99					0	0	0.003271	0	0
CHD6	84181	broad.mit.edu	37	20	40113090	40113090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:40113090G>A	uc002xka.1	-	15	2337	c.2159C>T	c.(2158-2160)TCC>TTC	p.S720F	CHD6_uc002xkd.2_Missense_Mutation_p.S698F	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	720					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GGTCAGGAAGGAAAAGTTCTT	0.473													51	94					0	0	0.014410	0	0
PTPRT	11122	broad.mit.edu	37	20	40739043	40739043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:40739043G>A	uc002xkg.2	-	23	3368	c.3184C>T	c.(3184-3186)CTT>TTT	p.L1062F	PTPRT_uc010ggj.2_Missense_Mutation_p.L1081F|PTPRT_uc010ggi.2_Missense_Mutation_p.L265F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1062	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AAGCCCAGAAGGCCAGTGGCA	0.562													26	59					0	0	0.004656	0	0
PTPRT	11122	broad.mit.edu	37	20	40747109	40747109	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:40747109C>T	uc002xkg.2	-	21	3100	c.2916G>A	c.(2914-2916)TGG>TGA	p.W972*	PTPRT_uc010ggj.2_Nonsense_Mutation_p.W991*|PTPRT_uc010ggi.2_Nonsense_Mutation_p.W175*	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	972	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGATCATTCTCCAAAAGTCCT	0.542													18	74					0	0	0.010504	0	0
PTPRT	11122	broad.mit.edu	37	20	41408905	41408905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:41408905G>A	uc002xkg.2	-	4	705	c.521C>T	c.(520-522)CCT>CTT	p.P174L	PTPRT_uc010ggj.2_Missense_Mutation_p.P174L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	174	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GATGTAGCCAGGATGACCCTT	0.522													27	61					0	0	0.008361	0	0
SGK2	10110	broad.mit.edu	37	20	42199298	42199298	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:42199298C>T	uc002xkv.2	+	6	801	c.582C>T	c.(580-582)CCC>CCT	p.P194P	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Silent_p.P134P|SGK2_uc010ggm.2_Silent_p.P134P|SGK2_uc002xks.2_Silent_p.P133P|SGK2_uc002xku.2_Silent_p.P134P	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	194	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCCTGGAGCCCCGGGCCAGGT	0.632													19	65					0	0	0.003330	0	0
TTPAL	79183	broad.mit.edu	37	20	43113135	43113135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:43113135C>T	uc002xmc.1	+	4	728	c.604C>T	c.(604-606)CCT>TCT	p.P202S	TTPAL_uc002xmd.1_Missense_Mutation_p.P202S|TTPAL_uc010ggr.1_Intron	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like	202	CRAL-TRIO.					intracellular	transporter activity			breast(1)	1						TCACTTTGGCCCTTTTATAGC	0.453													21	42					0	0	0.003330	0	0
PABPC1L	80336	broad.mit.edu	37	20	43545459	43545459	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:43545459C>T	uc010ggv.1	+	3	532	c.450C>T	c.(448-450)GCC>GCT	p.A150A	PABPC1L_uc010zwq.1_RNA	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	150	RRM 2.						nucleotide binding|RNA binding			ovary(1)	1						CCCATGAGGCCGCACAGCAGG	0.607													36	135					0	0	0.006230	0	0
PABPC1L	80336	broad.mit.edu	37	20	43550244	43550244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:43550244C>T	uc010ggv.1	+	6	830	c.748C>T	c.(748-750)CAT>TAT	p.H250Y	PABPC1L_uc010zwq.1_RNA|PABPC1L_uc002xmv.2_5'Flank	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	250	RRM 3.						nucleotide binding|RNA binding			ovary(1)	1						GGCCGTGGTCCATATGAACGG	0.612													47	117					0	0	0.014410	0	0
SEMG2	6407	broad.mit.edu	37	20	43850512	43850512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:43850512G>A	uc010ggz.2	+	2	296	c.239G>A	c.(238-240)CGA>CAA	p.R80Q	SEMG2_uc002xnk.2_Missense_Mutation_p.R80Q|SEMG2_uc002xnl.2_Missense_Mutation_p.R80Q	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	80	Repeat-rich region.|3-1.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GACTGGACCCGAAAAAGTCAG	0.368													30	42					0	0	0.013726	0	0
SYS1	90196	broad.mit.edu	37	20	43995745	43995745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:43995745C>T	uc002xnv.2	+	4	719	c.461C>T	c.(460-462)TCC>TTC	p.S154F	SYS1_uc010gha.2_RNA|SYS1_uc002xnw.1_Intron|SYS1-DBNDD2_uc002xnx.2_Intron	NM_033542	NP_291020	Q8N2H4	SYS1_HUMAN	SYS1 Golgi-localized integral membrane protein	154					protein transport	Golgi membrane|integral to membrane				skin(1)	1		Myeloproliferative disorder(115;0.0122)				GCCCCTAAATCCAATGTCTAG	0.567													26	57					0	0	0.005443	0	0
PIGT	51604	broad.mit.edu	37	20	44047558	44047558	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:44047558C>T	uc002xoh.1	+	3	505	c.432C>T	c.(430-432)TTC>TTT	p.F144F	PIGT_uc010ghb.1_Silent_p.F134F|PIGT_uc010zwt.1_Intron|PIGT_uc010ghd.1_Missense_Mutation_p.S85L|PIGT_uc010ghc.1_Intron|PIGT_uc010ghe.1_Intron|PIGT_uc010ghf.1_Missense_Mutation_p.S131L|PIGT_uc002xoj.1_Silent_p.F144F|PIGT_uc002xok.1_Silent_p.F144F|PIGT_uc010zwu.1_5'UTR|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_5'UTR|PIGT_uc010zww.1_Intron|PIGT_uc010zwx.1_Missense_Mutation_p.S13L|PIGT_uc010zwy.1_Intron|PIGT_uc010zwz.1_Intron|PIGT_uc010zxa.1_Intron|PIGT_uc002xol.1_5'UTR|PIGT_uc010zxb.1_5'Flank	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	144	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				CTCTCAACTTCATCGACTCCA	0.512													54	74					0	0	0.014410	0	0
SLC12A5	57468	broad.mit.edu	37	20	44672309	44672310	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:44672309_44672310GG>AA	uc010zxl.1	+	10	1420_1421	c.1344_1345GG>AA	c.(1342-1347)AGGGAT>AGAAAT	p.D449N	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.D426N	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	449					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GGGACCTGAGGGATGCCCAGAA	0.584													23	74					0	0	0.004672	0	0
SLC13A3	64849	broad.mit.edu	37	20	45216772	45216772	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:45216772G>A	uc002xsf.1	-	8	1085	c.1047C>T	c.(1045-1047)TTC>TTT	p.F349F	SLC13A3_uc010ghn.1_Silent_p.F318F|SLC13A3_uc010zxw.1_Silent_p.F299F|SLC13A3_uc002xsg.1_Silent_p.F302F|SLC13A3_uc010gho.1_Intron|SLC13A3_uc010zxx.1_Silent_p.F251F	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	349	Helical; (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	CAAACATGCAGAAAAGGATGA	0.592													11	60					0	0	0.001855	0	0
SLC13A3	64849	broad.mit.edu	37	20	45221074	45221075	+	Nonsense_Mutation	DNP	TC	GT	GT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:45221074_45221075TC>GT	uc002xsf.1	-	6	926_927	c.888_889GA>AC	c.(886-891)TGGATC>TGACTC	p.296_297WI>*L	SLC13A3_uc010ghn.1_Nonsense_Mutation_p.265_266WI>*L|SLC13A3_uc010zxw.1_Nonsense_Mutation_p.246_247WI>*L|SLC13A3_uc002xsg.1_Nonsense_Mutation_p.249_250WI>*L|SLC13A3_uc010gho.1_Nonsense_Mutation_p.249_250WI>*L|SLC13A3_uc010zxx.1_Nonsense_Mutation_p.198_199WI>*L	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	296_297	Helical; (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	AGGAAGGAGATCCAGAGCCAGC	0.505													22	29					0	0	0.004672	0	0
ZMYND8	23613	broad.mit.edu	37	20	45905204	45905204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:45905204G>A	uc002xta.1	-	11	1528	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	ZMYND8_uc010ghq.1_Missense_Mutation_p.S102F|ZMYND8_uc010ghr.1_Missense_Mutation_p.S400F|ZMYND8_uc002xst.1_Missense_Mutation_p.S400F|ZMYND8_uc002xsu.1_Missense_Mutation_p.S425F|ZMYND8_uc002xsv.1_Missense_Mutation_p.S400F|ZMYND8_uc002xsw.1_Missense_Mutation_p.S177F|ZMYND8_uc002xsx.1_Missense_Mutation_p.S177F|ZMYND8_uc002xsy.1_Missense_Mutation_p.S400F|ZMYND8_uc002xsz.1_Missense_Mutation_p.S362F|ZMYND8_uc010zxy.1_Missense_Mutation_p.S452F|ZMYND8_uc002xtb.1_Missense_Mutation_p.S445F|ZMYND8_uc002xss.2_Missense_Mutation_p.S425F|ZMYND8_uc010zxz.1_Missense_Mutation_p.S420F|ZMYND8_uc002xtc.1_Missense_Mutation_p.S445F|ZMYND8_uc002xtd.1_Missense_Mutation_p.S420F|ZMYND8_uc002xte.1_Missense_Mutation_p.S425F|ZMYND8_uc010zya.1_Missense_Mutation_p.S425F|ZMYND8_uc002xtf.1_Missense_Mutation_p.S445F|ZMYND8_uc002xtg.2_Missense_Mutation_p.S419F|ZMYND8_uc010ghs.1_Missense_Mutation_p.S419F	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	425							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			ATCCGACAAGGAAATCCGGCG	0.592													13	70					0	0	0.003163	0	0
NCOA3	8202	broad.mit.edu	37	20	46276050	46276050	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:46276050C>T	uc002xtk.2	+	18	3691	c.3486C>T	c.(3484-3486)CCC>CCT	p.P1162P	NCOA3_uc010ght.1_Silent_p.P1157P|NCOA3_uc002xtl.2_Silent_p.P1162P|NCOA3_uc002xtm.2_Silent_p.P1162P|NCOA3_uc002xtn.2_Silent_p.P1162P|NCOA3_uc010zyc.1_Silent_p.P957P	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1162	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TCATGAGACCCCGGACAAACA	0.502													35	47					0	0	0.004289	0	0
ZNFX1	57169	broad.mit.edu	37	20	47865894	47865894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:47865894G>A	uc002xui.2	-	14	3914	c.3667C>T	c.(3667-3669)CGA>TGA	p.R1223*		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1223							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TTCTTGGCTCGGGACAAGGCC	0.507													44	65					0	0	0.014410	0	0
BCAS4	55653	broad.mit.edu	37	20	49458428	49458428	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:49458428C>T	uc002xvq.2	+	4	544	c.480C>T	c.(478-480)TCC>TCT	p.S160S	BCAS4_uc002xvr.2_Silent_p.S160S|BCAS4_uc002xvs.2_Intron	NM_017843	NP_060313	Q8TDM0	BCAS4_HUMAN	breast carcinoma amplified sequence 4 isoform a	160						cytoplasm					0						GGCTCCCCTCCTTCAGGAACG	0.667													14	11					0	0	0.003163	0	0
ATP9A	10079	broad.mit.edu	37	20	50230308	50230308	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:50230308A>G	uc002xwg.1	-	23	2479	c.2479T>C	c.(2479-2481)TTG>CTG	p.L827L	ATP9A_uc010gih.1_Silent_p.L691L|ATP9A_uc002xwf.1_5'UTR	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	827	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						ACCATAAGCAACCGGCCAAGA	0.507													61	138					0	0	0.014410	0	0
SUMO1P1	391257	broad.mit.edu	37	20	52491948	52491948	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:52491948G>A	uc010gik.2	-	1		c.301C>T				NR_002189				Homo sapiens SUMO1 pseudogene 1, mRNA (cDNA clone IMAGE:6619211).												0						CTGACAGTACGATTTCTTGAG	0.398													6	9					0	0	0.001168	0	0
CSTF1	1477	broad.mit.edu	37	20	54972518	54972519	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:54972518_54972519CC>TT	uc002xxl.1	+	3	625_626	c.425_426CC>TT	c.(424-426)GCC>GTT	p.A142V	CSTF1_uc002xxm.1_Missense_Mutation_p.A142V|CSTF1_uc002xxn.1_Missense_Mutation_p.A142V|CSTF1_uc002xxo.1_Missense_Mutation_p.A85V	NM_001033521	NP_001028693	Q05048	CSTF1_HUMAN	cleavage stimulation factor subunit 1	142	WD 1.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(1)	1			Colorectal(105;0.202)			AGGATGTTGGCCAAAAGTGCCA	0.411													28	46					0	0	0.004672	0	0
CASS4	57091	broad.mit.edu	37	20	55027537	55027537	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:55027537G>A	uc002xxp.2	+	6	1530	c.1305G>A	c.(1303-1305)TTG>TTA	p.L435L	CASS4_uc002xxq.3_Silent_p.L435L|CASS4_uc002xxr.2_Silent_p.L435L|CASS4_uc010zze.1_Silent_p.L381L|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	435					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGCTCTCCTTGGACCTGGATG	0.572													12	23					0	0	0.013537	0	0
RAE1	8480	broad.mit.edu	37	20	55953129	55953129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:55953129G>A	uc002xyg.2	+	12	1422	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K	RAE1_uc002xyh.2_Missense_Mutation_p.E361K|RAE1_uc002xyi.2_Missense_Mutation_p.E361K	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	361					carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			TGCAGCCGAAGAGCTAAAGCC	0.418													11	15					0	0	0.001855	0	0
RAB22A	57403	broad.mit.edu	37	20	56928332	56928332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:56928332C>T	uc002xyz.2	+	4	464	c.202C>T	c.(202-204)CGT>TGT	p.R68C		NM_020673	NP_065724	Q9UL26	RB22A_HUMAN	RAS-related protein RAB-22A	68					endocytosis|endosome organization|protein transport|small GTPase mediated signal transduction	early endosome|endosome membrane|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_epithelial(3;5.09e-14)|Lung NSC(12;0.000122)|all_lung(29;0.00042)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;4.73e-08)|all cancers(14;4.83e-07)			TCTGCAGTTTCGTGCCTTAGC	0.343													38	48					0	0	0.008740	0	0
ZNF831	128611	broad.mit.edu	37	20	57766277	57766277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:57766277C>T	uc002yan.2	+	1	203	c.203C>T	c.(202-204)CCC>CTC	p.P68L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	68	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACGGTGCCTCCCGGGGGCCTC	0.701													5	15					0	0	0.000602	0	0
ZNF831	128611	broad.mit.edu	37	20	57768088	57768088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:57768088C>T	uc002yan.2	+	1	2014	c.2014C>T	c.(2014-2016)CCC>TCC	p.P672S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	672						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGGCACAGTCCCCACCCAAGA	0.622													19	21					0	0	0.006122	0	0
ZNF831	128611	broad.mit.edu	37	20	57782063	57782063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:57782063G>A	uc002yan.2	+	3	3979	c.3979G>A	c.(3979-3981)GGA>AGA	p.G1327R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1327						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CGCACTTGAGGGACTGAAGCC	0.572													35	67					0	0	0.003755	0	0
EDN3	1908	broad.mit.edu	37	20	57876712	57876712	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:57876712C>T	uc002yap.2	+	2	669	c.300C>T	c.(298-300)TTC>TTT	p.F100F	EDN3_uc002yao.1_Silent_p.F100F|EDN3_uc002yaq.2_Silent_p.F100F|EDN3_uc002yar.2_Silent_p.F100F|EDN3_uc002yas.2_Silent_p.F100F	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	100					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					GCACGTGCTTCACCTACAAGG	0.612													58	95					0	0	0.014410	0	0
CDH26	60437	broad.mit.edu	37	20	58563960	58563960	+	Missense_Mutation	SNP	C	T	T	rs36098341		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:58563960C>T	uc002ybe.2	+	9	1325	c.1025C>T	c.(1024-1026)CCT>CTT	p.P342L	CDH26_uc002ybf.1_5'UTR|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	342	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GGGTTCCAGCCTTTGGATTAT	0.547													18	34					0	0	0.006122	0	0
CDH4	1002	broad.mit.edu	37	20	60427927	60427927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:60427927G>A	uc002ybn.1	+	6	864	c.850G>A	c.(850-852)GGC>AGC	p.G284S	CDH4_uc002ybp.1_Missense_Mutation_p.G210S	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	284	Extracellular (Potential).|Cadherin 2.			G -> C (in Ref. 1; AAA35627).	adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGTCTACAACGGCTCCGTGGA	0.587													56	100					0	0	0.014410	0	0
TAF4	6874	broad.mit.edu	37	20	60585161	60585161	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:60585161G>A	uc002ybs.2	-	4	1702	c.1702C>T	c.(1702-1704)CAG>TAG	p.Q568*		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	568					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GTCCCCGTCTGAACAGCCGTC	0.607													13	43					0	0	0.003163	0	0
LAMA5	3911	broad.mit.edu	37	20	60892830	60892830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:60892830C>T	uc002ycq.2	-	54	7311	c.7244G>A	c.(7243-7245)AGG>AAG	p.R2415K		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2415	Domain II and I.|Potential.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCCTGCTTCCTTTGCTGAAG	0.468													18	26					0	0	0.010504	0	0
LAMA5	3911	broad.mit.edu	37	20	60903975	60903975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:60903975G>A	uc002ycq.2	-	34	4439	c.4372C>T	c.(4372-4374)CCC>TCC	p.P1458S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1458	Laminin EGF-like 12.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCATGGCAGGGACACTGGCCC	0.637													29	48					0	0	0.008361	0	0
LAMA5	3911	broad.mit.edu	37	20	60907633	60907633	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:60907633G>A	uc002ycq.2	-	27	3490	c.3423C>T	c.(3421-3423)TCC>TCT	p.S1141S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1141	Domain IV 1 (domain IV B).				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGGGTGCAGGGAGAGCAGCC	0.711													6	4					0	0	0.001984	0	0
C20orf151	140893	broad.mit.edu	37	20	60990935	60990935	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:60990935G>A	uc002ycw.1	-	7	610	c.453C>T	c.(451-453)TCC>TCT	p.S151S		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	151											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			AGCCACCAGGGGAGGGGAGCA	0.692													7	16					0	0	0.003080	0	0
NTSR1	4923	broad.mit.edu	37	20	61391602	61391602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:61391602C>T	uc002ydf.2	+	4	1611	c.1240C>T	c.(1240-1242)CGC>TGC	p.R414C		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	414	Cytoplasmic (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			CAATGCCACCCGCGAGACGCT	0.687													17	24					0	0	0.006122	0	0
OGFR	11054	broad.mit.edu	37	20	61443801	61443801	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:61443801C>T	uc002ydj.2	+	7	869	c.834C>T	c.(832-834)TTC>TTT	p.F278F	OGFR_uc002ydk.2_Silent_p.F261F|OGFR_uc002ydl.2_Silent_p.F226F	NM_007346	NP_031372	Q9NZT2	OGFR_HUMAN	opioid growth factor receptor	278	Bipartite nuclear localization signal (Potential).				regulation of cell growth	cytoplasm|membrane|nucleus	opioid receptor activity				0	Breast(26;3.65e-08)					GGGAGCACTTCCGGCCCCGCT	0.682													4	4					0	0	0.009096	0	0
DIDO1	11083	broad.mit.edu	37	20	61511764	61511764	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:61511764G>A	uc002ydr.1	-	16	5808	c.5544C>T	c.(5542-5544)CCC>CCT	p.P1848P	DIDO1_uc002yds.1_Silent_p.P1848P	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1848	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TCTCCCCATGGGGATCCTTGC	0.602													42	72					0	0	0.008740	0	0
DIDO1	11083	broad.mit.edu	37	20	61525205	61525205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:61525205G>A	uc002ydr.1	-	12	3178	c.2914C>T	c.(2914-2916)CCA>TCA	p.P972S	DIDO1_uc002yds.1_Missense_Mutation_p.P972S|DIDO1_uc002ydt.1_Missense_Mutation_p.P972S|DIDO1_uc002ydu.1_Missense_Mutation_p.P972S	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	972					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GAACTGCTTGGAGCGGTCCTG	0.672													34	75					0	0	0.004289	0	0
ARFGAP1	55738	broad.mit.edu	37	20	61917794	61917794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:61917794G>A	uc002yem.2	+	12	1023	c.911G>A	c.(910-912)AGC>AAC	p.S304N	ARFGAP1_uc011aas.1_Missense_Mutation_p.S259N|ARFGAP1_uc011aat.1_Missense_Mutation_p.S191N|ARFGAP1_uc002yel.2_Missense_Mutation_p.S312N|ARFGAP1_uc002yen.2_Missense_Mutation_p.A384T|ARFGAP1_uc002yeo.1_RNA|hsa-mir-4326|MI0015866_5'Flank	NM_018209	NP_060679	Q8N6T3	ARFG1_HUMAN	ADP-ribosylation factor GTPase activating	304					COPI coating of Golgi vesicle|protein transport|regulation of ARF GTPase activity|retrograde vesicle-mediated transport, Golgi to ER	cytosol|Golgi-associated vesicle membrane	ARF GTPase activator activity|zinc ion binding			pancreas(1)	1	all_cancers(38;1.59e-09)					CCCTTGGACAGGTATGCTGTG	0.622													11	21					0	0	0.013537	0	0
KCNQ2	3785	broad.mit.edu	37	20	62038246	62038246	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:62038246G>A	uc002yey.1	-	17	2547	c.2370C>T	c.(2368-2370)ATC>ATT	p.I790I	KCNQ2_uc002yez.1_Silent_p.I759I|KCNQ2_uc002yfa.1_Silent_p.I772I|KCNQ2_uc002yfb.1_Silent_p.I762I	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	790	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CCACGGACGGGATGGAGATGG	0.672													7	15					0	0	0.004482	0	0
KCNQ2	3785	broad.mit.edu	37	20	62045536	62045536	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:62045536G>A	uc002yey.1	-	14	1713	c.1536C>T	c.(1534-1536)CTC>CTT	p.L512L	KCNQ2_uc002yez.1_Silent_p.L481L|KCNQ2_uc002yfa.1_Silent_p.L494L|KCNQ2_uc002yfb.1_Silent_p.L484L	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	512	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CCTCTCCGGGGAGGCTTGCTT	0.657													20	27					0	0	0.010504	0	0
PRIC285	85441	broad.mit.edu	37	20	62192594	62192594	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:62192594G>A	uc002yfm.2	-	15	7879	c.6987C>T	c.(6985-6987)TTC>TTT	p.F2329F	PRIC285_uc002yfl.1_Silent_p.F1760F	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2329					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGTCCAGCTCGAACTTCCGAG	0.632													35	46					0	0	0.005524	0	0
PRIC285	85441	broad.mit.edu	37	20	62199807	62199807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:62199807G>A	uc002yfm.2	-	6	2526	c.1634C>T	c.(1633-1635)CCC>CTC	p.P545L	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	545	ATP (Potential).				cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGTGCCAAAGGGGCCATAGAT	0.652													4	15					0	0	0.009096	0	0
TCEA2	6919	broad.mit.edu	37	20	62698282	62698282	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr20:62698282G>A	uc011abs.1	+	3	806	c.150G>A	c.(148-150)GGG>GGA	p.G50G	TCEA2_uc011abr.1_Silent_p.G23G|TCEA2_uc010gkq.2_Silent_p.G23G|TCEA2_uc010gks.2_Silent_p.G50G|TCEA2_uc010gkt.2_Silent_p.G23G|TCEA2_uc010gku.1_Silent_p.G23G	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	50	TFIIS N-terminal.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CCCGAGTCGGGATGTCTGTCA	0.622													7	14					0	0	0.003080	0	0
BAGE2	85319	broad.mit.edu	37	21	11058213	11058213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:11058213G>A	uc002yit.1	-	3	435	c.227C>T	c.(226-228)TCA>TTA	p.S76L	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGATGTGACTGAAATCCTGAA	0.408													13	45					0	0	0.001855	0	0
C21orf81	391267	broad.mit.edu	37	21	15326399	15326399	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:15326399C>T	uc002yji.2	-	2		c.816G>A				NR_027270				Homo sapiens C21orf81 protein (C21orf81) mRNA, complete cds.												0						TCTCCTTTTCCATTGACTATT	0.289													36	19					0	0	0.004878	0	0
BACH1	571	broad.mit.edu	37	21	30698862	30698863	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:30698862_30698863CC>TT	uc002ynj.2	+	3	832_833	c.717_718CC>TT	c.(715-720)GTCCGT>GTTTGT	p.R240C	BACH1_uc002ynk.2_Missense_Mutation_p.R240C|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	240						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						CTGACAGAGTCCGTACTGGGGA	0.446													30	21					0	0	0.004672	0	0
DSCR6	53820	broad.mit.edu	37	21	38390361	38390361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:38390361C>T	uc002yvv.2	+	4	637	c.427C>T	c.(427-429)CGG>TGG	p.R143W	DSCR6_uc011aec.1_Silent_p.V29V|DSCR6_uc010gnd.2_Silent_p.V29V	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	143						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				GGTGGGAGGTCGGCAGGAAAA	0.627													19	7					0	0	0.008871	0	0
BRWD1	54014	broad.mit.edu	37	21	40590178	40590178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:40590178C>T	uc002yxk.1	-	31	3698	c.3559G>A	c.(3559-3561)GGC>AGC	p.G1187S	BRWD1_uc010goc.1_Intron|BRWD1_uc002yxl.2_Missense_Mutation_p.G1187S|BRWD1_uc010god.1_Missense_Mutation_p.G153S	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1187	Bromo 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				TCAACAGGGCCTGCAAAAGCT	0.378													19	10					0	0	0.010504	0	0
IGSF5	150084	broad.mit.edu	37	21	41151063	41151063	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:41151063G>A	uc002yyo.2	+	5	868	c.765G>A	c.(763-765)CCG>CCA	p.P255P		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	255	Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				CAAGTTTACCGAGTTTAGGTT	0.383													35	17					0	0	0.005524	0	0
DSCAM	1826	broad.mit.edu	37	21	41414529	41414529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:41414529C>T	uc002yyq.1	-	32	5907	c.5455G>A	c.(5455-5457)GAA>AAA	p.E1819K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1819	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGGCGTGTTCGTAGGCCCTG	0.527													31	23					0	0	0.007291	0	0
BACE2	25825	broad.mit.edu	37	21	42540503	42540503	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:42540503G>A	uc002yyw.2	+	1	775	c.312_splice	c.e1+1	p.K104_splice	BACE2_uc002yyx.2_Splice_Site_p.K104_splice|BACE2_uc002yyy.2_Splice_Site_p.K104_splice	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A						membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				CCCGCAGAAGGTAGGGACCCC	0.692													6	5					0	0	0.003080	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42860336	42860336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:42860336C>T	uc002yzj.2	-	5	564	c.430G>A	c.(430-432)GAC>AAC	p.D144N	TMPRSS2_uc010gor.2_Missense_Mutation_p.D181N|TMPRSS2_uc010gos.1_Missense_Mutation_p.D144N	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	144	Extracellular (Potential).|LDL-receptor class A.				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				CGATTCTCGTCCTCCCCGCCG	0.612			T	ERG|ETV1|ETV4|ETV5	prostate 								24	21					0	0	0.008361	0	0
ABCG1	9619	broad.mit.edu	37	21	43711712	43711712	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:43711712C>T	uc002zaq.2	+	13	1741	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	ABCG1_uc002zan.2_Silent_p.S535S|ABCG1_uc002zam.2_Silent_p.S511S|ABCG1_uc002zao.2_Silent_p.S530S|ABCG1_uc002zap.2_Silent_p.S533S|ABCG1_uc002zar.2_Silent_p.S544S|ABCG1_uc011aev.1_Silent_p.S556S|ABCG1_uc010gpb.1_Missense_Mutation_p.P186S	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	545	Helical; (Potential).|ABC transmembrane type-2.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	CCATGACCTCCCTGGTGGCAC	0.662													18	7					0	0	0.004990	0	0
TRPM2	7226	broad.mit.edu	37	21	45820172	45820172	+	Missense_Mutation	SNP	C	T	T	rs146409810	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:45820172C>T	uc002zet.1	+	16	2452	c.2239C>T	c.(2239-2241)CTC>TTC	p.L747F	TRPM2_uc002zeu.1_Missense_Mutation_p.L747F|TRPM2_uc002zew.1_Missense_Mutation_p.L747F|TRPM2_uc010gpt.1_Missense_Mutation_p.L747F|TRPM2_uc002zex.1_Missense_Mutation_p.L533F|TRPM2_uc002zey.1_Missense_Mutation_p.L260F	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	747	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GTGGGGCCAGCTCTCCGTGGA	0.602													24	17					0	0	0.007291	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012327	46012327	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:46012327C>T	uc002zfm.2	-	1	60	c.39G>A	c.(37-39)CTG>CTA	p.L13L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	13						keratin filament					0						TGCCGTAGCTCAGGTCGCTGG	0.652													18	14					0	0	0.014323	0	0
C21orf58	54058	broad.mit.edu	37	21	47742623	47742624	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr21:47742623_47742624GG>AA	uc002zjf.2	-	2	1163_1164	c.29_30CC>TT	c.(28-30)TCC>TTT	p.S10F	PCNT_uc002zji.3_5'Flank|PCNT_uc002zjj.2_5'Flank|C21orf58_uc002zja.2_5'Flank|C21orf58_uc011afx.1_Intron|C21orf58_uc010gqj.1_RNA|C21orf58_uc002zjg.1_RNA	NM_058180	NP_478060	P58505	CU058_HUMAN	hypothetical protein LOC54058	10										pancreas(1)	1	Breast(49;0.112)			Colorectal(79;0.239)		GCTTCCTGAGggaggttgcagg	0.351													12	4					0	0	0.004672	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													31	583					0	0	0.004289	0	0
POTEH	23784	broad.mit.edu	37	22	16287790	16287790	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:16287790G>A	uc010gqp.2	-	1	148	c.96C>T	c.(94-96)TTC>TTT	p.F32F	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	32										skin(1)	1						TGCACCAGGCGAAGCAGTGGC	0.582													87	559					0	0	0.014410	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073189	17073189	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:17073189G>T	uc002zlp.1	-	1	512	c.252C>A	c.(250-252)CAC>CAA	p.H84Q		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	84					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ATGCTGCTGGGTGCTCCAGCT	0.622													19	42					2.94398e-08	3.23394e-08	0.007413	1	0
CECR2	27443	broad.mit.edu	37	22	18028131	18028131	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:18028131C>T	uc010gqw.1	+	16	3214	c.3088C>T	c.(3088-3090)CTA>TTA	p.L1030L	CECR2_uc010gqv.1_Silent_p.L888L|CECR2_uc002zml.2_Silent_p.L889L|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1072					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CAGGGGCGCTCTATCCGAGAA	0.622													8	26					0	0	0.004482	0	0
CECR2	27443	broad.mit.edu	37	22	18028387	18028387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:18028387C>T	uc010gqw.1	+	16	3470	c.3344C>T	c.(3343-3345)CCA>CTA	p.P1115L	CECR2_uc010gqv.1_Missense_Mutation_p.P973L|CECR2_uc002zml.2_Missense_Mutation_p.P974L|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1157					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CACATCAGTCCAGGCCTGCAG	0.587													10	18					0	0	0.008291	0	0
KLHL22	84861	broad.mit.edu	37	22	20819664	20819664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:20819664G>A	uc002zsl.1	-	4	702	c.593C>T	c.(592-594)TCC>TTC	p.S198F	KLHL22_uc011ahr.1_Missense_Mutation_p.S55F|KLHL22_uc002zsm.1_Missense_Mutation_p.S198F	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	198					cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GCTGAGGAGGGAGTAGACCTT	0.557													34	43					0	0	0.013726	0	0
MED15	51586	broad.mit.edu	37	22	20929471	20929471	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:20929471C>T	uc002zsp.2	+	9	1304	c.1224C>T	c.(1222-1224)TCC>TCT	p.S408S	MED15_uc002zsq.2_Intron|MED15_uc010gso.2_Intron|MED15_uc002zsr.2_Intron|MED15_uc011ahs.1_Intron|MED15_uc002zss.2_Intron|MED15_uc011ahu.1_Silent_p.S134S|MED15_uc002zst.2_Silent_p.S24S	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	408	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			CCGCTGTGTCCGCCATCCCGT	0.627													38	59					0	0	0.004878	0	0
SLC7A4	6545	broad.mit.edu	37	22	21384585	21384585	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:21384585G>A	uc002zud.2	-	3	1106	c.1038C>T	c.(1036-1038)GCC>GCT	p.A346A	SLC7A4_uc002zue.2_Silent_p.A346A	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	346					cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CGGCGGCCATGGCATAGACAA	0.642													7	56					0	0	0.003080	0	0
SDF2L1	23753	broad.mit.edu	37	22	21998284	21998284	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:21998284C>T	uc002zvf.2	+	3	570	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_022044	NP_071327	Q9HCN8	SDF2L_HUMAN	stromal cell-derived factor 2-like 1 precursor	162	MIR 3.			F -> L (in Ref. 1; BAB18277).		endoplasmic reticulum lumen|membrane					0	Colorectal(54;0.105)					CTGTGCGCTTCCAGCATGTGG	0.627											OREG0026342	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	23					0	0	0.003080	0	0
LOC96610	96610	broad.mit.edu	37	22	23011132	23011132	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:23011132G>A	uc011aim.1	+	121		c.7818G>A								Parts of antibodies, mostly variable regions.												0						CTGTGCTGGTGATTTATAAAG	0.587													23	39					0	0	0.003954	0	0
LOC96610	96610	broad.mit.edu	37	22	23029640	23029640	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:23029640C>T	uc011aim.1	+	128		c.8279C>T								Parts of antibodies, mostly variable regions.												0						GAGCGATTCTCTGGCTCCAGC	0.522													25	51					0	0	0.003330	0	0
LOC96610	96610	broad.mit.edu	37	22	23162186	23162186	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:23162186C>T	uc011aim.1	+	283		c.12962C>T								Parts of antibodies, mostly variable regions.												0						CCCTGACCATCAGCAGAGCCC	0.572													16	36					0	0	0.003163	0	0
ZNF70	7621	broad.mit.edu	37	22	24087233	24087234	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:24087233_24087234CC>TT	uc002zxs.2	-	2	555_556	c.94_95GG>AA	c.(94-96)GGG>AAG	p.G32K	ZNF70_uc002zxr.1_5'Flank	NM_021916	NP_068735	Q9UC06	ZNF70_HUMAN	zinc finger protein 70	32						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						AAAAGGGTCCCCCAGGTCCTCC	0.49													47	69					0	0	0.004672	0	0
GSTT1	2952	broad.mit.edu	37	22	24376534	24376534	+	Silent	SNP	C	T	T	rs76323459		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:24376534C>T	uc002zze.3	-	5	665	c.612G>A	c.(610-612)GAG>GAA	p.E204E	GSTT1_uc002zzf.3_RNA|GSTT1_uc010gug.2_RNA|GSTT1_uc011ajl.1_Silent_p.E86E|GSTT1_uc010guh.2_RNA	NM_000853	NP_000844	P30711	GSTT1_HUMAN	glutathione S-transferase theta 1	204	GST C-terminal.				glutathione metabolic process	cytosol|soluble fraction	glutathione peroxidase activity|glutathione transferase activity			ovary(1)	1					Glutathione(DB00143)	GGAAGAGGTCCTCCCCCACTG	0.632									Myelodysplasia_and_Acute_Myeloid_Leukemia_(AML)_Familial				23	49					0	0	0.003330	0	0
GGT5	2687	broad.mit.edu	37	22	24622120	24622120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:24622120C>T	uc002zzo.3	-	8	1570	c.1153G>A	c.(1153-1155)GGG>AGG	p.G385R	GGT5_uc002zzp.3_Missense_Mutation_p.G385R|GGT5_uc002zzr.3_Missense_Mutation_p.G353R|GGT5_uc002zzq.3_Missense_Mutation_p.G353R|GGT5_uc011ajm.1_Missense_Mutation_p.G308R|GGT5_uc011ajn.1_RNA	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	385	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						GTGCCTGTCCCGTGGCCCCAG	0.692													9	19					0	0	0.010729	0	0
SGSM1	129049	broad.mit.edu	37	22	25272680	25272680	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:25272680G>A	uc003abg.2	+	14	1750	c.1593G>A	c.(1591-1593)GAG>GAA	p.E531E	SGSM1_uc003abh.2_Silent_p.E531E|SGSM1_uc010guu.1_Silent_p.E476E|SGSM1_uc003abj.2_Silent_p.E476E|SGSM1_uc003abi.1_Silent_p.E451E	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	531						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GCAACCATGAGAGGTATGAGG	0.532													28	50					0	0	0.006320	0	0
IGLL3	91353	broad.mit.edu	37	22	25714166	25714166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:25714166C>T	uc003abr.2	+	1	279	c.179C>T	c.(178-180)CCC>CTC	p.P60L		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						TGGCCACCCCCCTACCCTGTG	0.652													22	44					0	0	0.014323	0	0
MYO18B	84700	broad.mit.edu	37	22	26173717	26173717	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:26173717G>A	uc003abz.1	+	8	2287	c.2037G>A	c.(2035-2037)GGG>GGA	p.G679G	MYO18B_uc003aca.1_Silent_p.G560G|MYO18B_uc010guy.1_Silent_p.G560G|MYO18B_uc010guz.1_Silent_p.G560G|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Silent_p.G192G	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	679	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACCTGGTGGGGATGGCAGGCA	0.622													38	69					0	0	0.006230	0	0
MYO18B	84700	broad.mit.edu	37	22	26304324	26304324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:26304324G>A	uc003abz.1	+	32	5434	c.5184G>A	c.(5182-5184)ATG>ATA	p.M1728I	MYO18B_uc003aca.1_Missense_Mutation_p.M1609I|MYO18B_uc010guy.1_Missense_Mutation_p.M1610I|MYO18B_uc010guz.1_Missense_Mutation_p.M1608I|MYO18B_uc011aka.1_Missense_Mutation_p.M882I|MYO18B_uc011akb.1_Missense_Mutation_p.M1241I	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1728	Potential.|Tail.|Gln-rich.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TCGAGCGGATGAAGCAGATGC	0.602													7	14					0	0	0.004482	0	0
SEZ6L	23544	broad.mit.edu	37	22	26689006	26689006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:26689006G>A	uc003acb.2	+	2	885	c.729G>A	c.(727-729)ATG>ATA	p.M243I	SEZ6L_uc003acc.2_Missense_Mutation_p.M243I|SEZ6L_uc011akc.1_Missense_Mutation_p.M243I|SEZ6L_uc003acd.2_Missense_Mutation_p.M243I|SEZ6L_uc011akd.1_Missense_Mutation_p.M243I|SEZ6L_uc003ace.2_Missense_Mutation_p.M243I|SEZ6L_uc003acf.1_Missense_Mutation_p.M16I|SEZ6L_uc010gvc.1_Missense_Mutation_p.M16I	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	243	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TGGCCCTGATGGACAAAGGTG	0.522													10	16					0	0	0.008291	0	0
HPS4	89781	broad.mit.edu	37	22	26849355	26849355	+	Silent	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:26849355A>C	uc003acl.2	-	14	2630	c.1971T>G	c.(1969-1971)GCT>GCG	p.A657A	HPS4_uc003aci.2_Silent_p.A652A|HPS4_uc003acj.2_Silent_p.A521A|HPS4_uc003ack.2_Silent_p.A448A|HPS4_uc003acn.2_Silent_p.A503A|HPS4_uc003ach.2_Silent_p.A392A	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	657					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						AGGCGTACACAGCCGTGGAGG	0.552									Hermansky-Pudlak_syndrome				33	63					0	0	0.004289	0	0
AP1B1	162	broad.mit.edu	37	22	29745234	29745234	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:29745234G>A	uc003afj.2	-	11	1594	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L	AP1B1_uc003afi.2_Silent_p.L470L|AP1B1_uc003afk.2_Silent_p.L470L|AP1B1_uc003afl.2_Silent_p.L470L|AP1B1_uc011ako.1_Silent_p.L23L	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	470					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						GGAAGCCCTCGAGGAAGCTCT	0.617													30	60					0	0	0.012213	0	0
RFPL1	5988	broad.mit.edu	37	22	29834853	29834853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:29834853C>T	uc003afn.2	+	1	282	c.73C>T	c.(73-75)CCC>TCC	p.P25S	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	25							zinc ion binding				0						GTGCACTTTTCCCCTGGCAGT	0.488													34	68					0	0	0.004289	0	0
MTMR3	8897	broad.mit.edu	37	22	30416441	30416441	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:30416441C>T	uc003agv.3	+	17	3121	c.2793C>T	c.(2791-2793)GCC>GCT	p.A931A	MTMR3_uc003agu.3_Silent_p.A931A|MTMR3_uc003agw.3_Silent_p.A931A	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	931					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			GCAATGGTGCCCCAGAGACTG	0.577													32	48					0	0	0.003271	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30690846	30690846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:30690846G>A	uc011akt.1	-	6	668	c.644C>T	c.(643-645)GCC>GTC	p.A215V	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Missense_Mutation_p.A73V|TBC1D10A_uc003ahj.3_Missense_Mutation_p.A127V|TBC1D10A_uc010gvu.2_Missense_Mutation_p.A222V|TBC1D10A_uc003ahk.3_Missense_Mutation_p.A215V	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	215	Rab-GAP TBC.					intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						GCACCAGAAGGCTTGCTGTGG	0.632													15	29					0	0	0.004007	0	0
PES1	23481	broad.mit.edu	37	22	30984049	30984049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:30984049G>A	uc003aij.1	-	3	291	c.217C>T	c.(217-219)CTC>TTC	p.L73F	PES1_uc003aik.1_Missense_Mutation_p.L73F|PES1_uc003ail.1_Missense_Mutation_p.L73F|PES1_uc003aim.1_Missense_Mutation_p.L73F|PES1_uc003ain.1_5'UTR|PES1_uc003aio.1_5'UTR	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain	73	Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TCGTGGAGGAGAAACCTGATG	0.338													43	60					0	0	0.013114	0	0
MORC2	22880	broad.mit.edu	37	22	31333589	31333589	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:31333589G>A	uc003aje.1	-	16	2657	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	493	CW-type.						ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						TGGTGGTGGGGATTTCCATAG	0.552													36	53					0	0	0.004289	0	0
LIMK2	3985	broad.mit.edu	37	22	31663834	31663834	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:31663834C>T	uc003akh.2	+	10	1346	c.1201C>T	c.(1201-1203)CTG>TTG	p.L401L	LIMK2_uc003akg.2_Silent_p.L318L|LIMK2_uc003aki.2_Silent_p.L155L|LIMK2_uc003akj.2_Silent_p.L380L|LIMK2_uc003akk.2_Silent_p.L380L|LIMK2_uc011aln.1_Silent_p.L318L	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	401	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						GGATAAGAAGCTGAACCTCCT	0.552													34	59					0	0	0.003271	0	0
SYN3	8224	broad.mit.edu	37	22	32909799	32909800	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:32909799_32909800GG>AC	uc003amx.2	-	13	1781_1782	c.1622_1623CC>GT	c.(1621-1623)TCC>TGT	p.S541C	SYN3_uc003amy.2_Missense_Mutation_p.P444V|SYN3_uc003amz.2_Missense_Mutation_p.S540C	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	541	E.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TGTTAGTCAGGGACTGAGATTT	0.54													23	59					0	0	0.004672	0	0
ISX	91464	broad.mit.edu	37	22	35463124	35463124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:35463124G>A	uc003anj.2	+	1	995	c.44G>A	c.(43-45)AGA>AAA	p.R15K	ISX_uc011amg.1_Missense_Mutation_p.R3K	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	15						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GGTATGGAGAGAAATAGCTTG	0.592													10	25					0	0	0.008291	0	0
CACNG2	10369	broad.mit.edu	37	22	36962539	36962539	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:36962539C>T	uc003aps.1	-	3	579	c.297G>A	c.(295-297)CGG>CGA	p.R99R		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	99					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						CCCTCACGGCCCCTGTGGAAC	0.587													14	31					0	0	0.004007	0	0
CACNG2	10369	broad.mit.edu	37	22	36983539	36983539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:36983539C>T	uc003aps.1	-	2	550	c.268G>A	c.(268-270)GAA>AAA	p.E90K		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	90					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						GTGTCAGCTTCGTAATCTGCA	0.473													70	139					0	0	0.014410	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37465272	37465272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:37465272C>T	uc003aqs.1	-	16	2095	c.1981G>A	c.(1981-1983)GAA>AAA	p.E661K	TMPRSS6_uc003aqt.1_Missense_Mutation_p.E652K	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	661	Peptidase S1.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CTGTCCTCTTCGTGGTACGGG	0.692													7	15					0	0	0.006214	0	0
SSTR3	6753	broad.mit.edu	37	22	37603034	37603034	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:37603034C>T	uc003ara.2	-	2	871	c.809G>A	c.(808-810)TGG>TAG	p.W270*	SSTR3_uc003arb.2_Nonsense_Mutation_p.W270*	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	270	Helical; Name=6; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						GAAGGGCATCCAGCAGAGCAC	0.677													19	55					0	0	0.002780	0	0
PICK1	9463	broad.mit.edu	37	22	38468555	38468555	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:38468555T>C	uc003auq.2	+	9	1018	c.628T>C	c.(628-630)TTC>CTC	p.F210L	PICK1_uc003aur.2_Missense_Mutation_p.F210L|PICK1_uc003aus.2_Missense_Mutation_p.F210L|PICK1_uc003aut.2_Missense_Mutation_p.F210L	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	210	AH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					TTTTGTGAAGTTCGCCGATGC	0.587													41	63					0	0	0.007835	0	0
MGAT3	4248	broad.mit.edu	37	22	39884672	39884672	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:39884672C>T	uc003axv.3	+	2	1559	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F	MGAT3_uc010gxy.2_Silent_p.F440F	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	440	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					ATGGCGACTTCCCACGCTGGG	0.672													14	30					0	0	0.003163	0	0
FAM83F	113828	broad.mit.edu	37	22	40417328	40417328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:40417328C>T	uc003ayk.1	+	4	908	c.814C>T	c.(814-816)CTC>TTC	p.L272F		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	272										breast(1)	1						GGACAGAAACCTCCTCCTGCT	0.602													65	114					0	0	0.014410	0	0
MKL1	57591	broad.mit.edu	37	22	40816972	40816972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:40816972G>A	uc003ayv.1	-	7	967	c.760C>T	c.(760-762)CCC>TCC	p.P254S	MKL1_uc003ayw.1_Missense_Mutation_p.P254S|MKL1_uc010gye.1_Missense_Mutation_p.P254S|MKL1_uc010gyf.1_Missense_Mutation_p.P204S	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	254	Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GAGTCCATGGGGGGTGCCCCC	0.597			T	RBM15	acute megakaryocytic leukemia								16	44					0	0	0.004990	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257082	41257082	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:41257082T>G	uc003azj.2	-	1	1049	c.917A>C	c.(916-918)AAA>ACA	p.K306T	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_Intron|XPNPEP3_uc003azf.1_Intron|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	306					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						ACAATTCCTTTTGGTAGACTT	0.343													29	52					0	0	0.005443	0	0
MEI1	150365	broad.mit.edu	37	22	42191744	42191744	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:42191744G>A	uc003baz.1	+	30	3697	c.3672G>A	c.(3670-3672)CAG>CAA	p.Q1224Q	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Silent_p.Q610Q|MEI1_uc003bbc.1_Silent_p.Q592Q|MEI1_uc010gym.1_Silent_p.Q557Q|MEI1_uc003bbd.1_Silent_p.Q437Q|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA|MEI1_uc003bbf.2_Silent_p.Q238Q|MEI1_uc003bbg.2_Silent_p.Q194Q	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	1224							binding			central_nervous_system(1)|skin(1)	2						TGCAGCTCCAGAGCATGGGAC	0.642													13	29					0	0	0.001855	0	0
EFCAB6	64800	broad.mit.edu	37	22	43950943	43950943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:43950943C>T	uc003bdy.1	-	27	3669	c.3454G>A	c.(3454-3456)GGC>AGC	p.G1152S	EFCAB6_uc003bdz.1_Missense_Mutation_p.G1000S|EFCAB6_uc010gzi.1_Missense_Mutation_p.G1000S|EFCAB6_uc010gzj.1_Missense_Mutation_p.G378S	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GGCGGCGGGCCTTTGGGCATT	0.532													11	60					0	0	0.001855	0	0
EFCAB6	64800	broad.mit.edu	37	22	44068170	44068170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:44068170G>A	uc003bdy.1	-	14	1650	c.1435C>T	c.(1435-1437)CCC>TCC	p.P479S	EFCAB6_uc003bdz.1_Missense_Mutation_p.P327S|EFCAB6_uc010gzi.1_Missense_Mutation_p.P327S|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	479					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TCTGTACAGGGAGATGTCTTT	0.313													16	28					0	0	0.006122	0	0
EFCAB6	64800	broad.mit.edu	37	22	44178146	44178146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:44178146C>T	uc003bdy.1	-	3	268	c.53G>A	c.(52-54)CGA>CAA	p.R18Q	EFCAB6_uc003bdz.1_Intron|EFCAB6_uc010gzi.1_5'UTR|EFCAB6_uc011aqa.1_5'UTR|EFCAB6_uc003bea.1_Missense_Mutation_p.R15Q|EFCAB6_uc003beb.3_5'UTR	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TGTAAATTTTCGTGTGTGAGG	0.378													44	64					0	0	0.010771	0	0
C22orf9	23313	broad.mit.edu	37	22	45595851	45595851	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:45595851G>A	uc003bfx.1	-	8	984	c.918C>T	c.(916-918)TCC>TCT	p.S306S	C22orf9_uc010gzw.1_Silent_p.S158S|C22orf9_uc003bfv.1_Silent_p.S315S|C22orf9_uc003bfw.1_Silent_p.S311S|C22orf9_uc010gzx.2_Silent_p.S288S	NM_001009880	NP_001009880	Q6ICG6	K0930_HUMAN	hypothetical protein LOC23313 isoform b	306							protein binding				0		Ovarian(80;0.00965)|all_neural(38;0.0244)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|READ - Rectum adenocarcinoma(1;0.000617)|Colorectal(1;0.0024)		TCCTCTTGAGGGATGGGGAGA	0.612													17	40					0	0	0.004990	0	0
UPK3A	7380	broad.mit.edu	37	22	45689150	45689150	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:45689150C>T	uc003bfy.2	+	5	666	c.660C>T	c.(658-660)TTC>TTT	p.F220F	UPK3A_uc010gzy.2_Silent_p.F99F	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	220	Helical; (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CCCTGCCCTTCTTTCTACTTG	0.607													28	55					0	0	0.008361	0	0
CELSR1	9620	broad.mit.edu	37	22	46776758	46776758	+	Silent	SNP	G	A	A	rs142315389	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:46776758G>A	uc003bhw.1	-	22	7183	c.7183C>T	c.(7183-7185)CTG>TTG	p.L2395L	CELSR1_uc011arc.1_Silent_p.L716L	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2395	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		AACTCCACCAGGACGGGCCTC	0.642													17	47					0	0	0.004990	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719197	50719197	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:50719197C>T	uc003bkv.3	-	24	4075	c.3969G>A	c.(3967-3969)CTG>CTA	p.L1323L	PLXNB2_uc003bkt.1_Silent_p.L115L|PLXNB2_uc003bku.1_Silent_p.L308L	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1323	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACTTGCTGTTCAGCAGGTTGG	0.657													12	18					0	0	0.013537	0	0
LRRN1	57633	broad.mit.edu	37	3	3886591	3886591	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:3886591A>G	uc003bpt.3	+	2	1027	c.266A>G	c.(265-267)GAT>GGT	p.D89G	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	89	Extracellular (Potential).|LRR 1.					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		AAGACTGTGGATGAGCTGCAG	0.448													18	27					0	0	0.006122	0	0
LRRN1	57633	broad.mit.edu	37	3	3887126	3887126	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:3887126C>T	uc003bpt.3	+	2	1562	c.801C>T	c.(799-801)TTC>TTT	p.F267F	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	267	LRR 9.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		ATTTGAAATTCTTAGACCTCA	0.408													25	38					0	0	0.004656	0	0
LRRN1	57633	broad.mit.edu	37	3	3887429	3887429	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:3887429C>T	uc003bpt.3	+	2	1865	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	368	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		AGATCAGTATCCATAGCAATC	0.493													23	60					0	0	0.004656	0	0
LRRN1	57633	broad.mit.edu	37	3	3887534	3887534	+	Silent	SNP	C	T	T	rs113247781	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:3887534C>T	uc003bpt.3	+	2	1970	c.1209C>T	c.(1207-1209)CCC>CCT	p.P403P	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	403	LRRCT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CCATGCCGCCCGAATATAAAG	0.493													20	77					0	0	0.008871	0	0
GRM7	2917	broad.mit.edu	37	3	7721838	7721838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:7721838C>T	uc003bqm.2	+	9	2828	c.2554C>T	c.(2554-2556)CCT>TCT	p.P852S	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.P852S|GRM7_uc003bql.2_Missense_Mutation_p.P852S|GRM7_uc003bqn.1_Missense_Mutation_p.P435S	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	852	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CATTTTCCACCCTGAACTCAA	0.493													18	53					0	0	0.004990	0	0
SRGAP3	9901	broad.mit.edu	37	3	9166511	9166511	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:9166511A>G	uc003brf.1	-	2	834	c.158T>C	c.(157-159)TTC>TCC	p.F53S	SRGAP3_uc003brg.1_Missense_Mutation_p.F53S|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brk.2_Missense_Mutation_p.F53S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	53	FCH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TTTCCGGCGGAAAAACTCCTG	0.592			T	RAF1	pilocytic astrocytoma								22	45					0	0	0.012319	0	0
IL17RC	84818	broad.mit.edu	37	3	9960203	9960203	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:9960203C>T	uc003bua.2	+	5	824	c.588C>T	c.(586-588)GTC>GTT	p.V196V	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_RNA|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Silent_p.V100V|IL17RC_uc003btz.2_Silent_p.V125V|IL17RC_uc011atp.1_Intron|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Silent_p.V125V|IL17RC_uc010hct.2_Silent_p.V125V|IL17RC_uc010hcu.2_Silent_p.V125V|IL17RC_uc010hcv.2_Silent_p.V125V|IL17RC_uc011atq.1_Silent_p.V125V|IL17RC_uc003buc.2_5'UTR	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	196	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						AGGCCCAAGTCGTGCTCTCCT	0.642													28	63					0	0	0.012213	0	0
IL17RC	84818	broad.mit.edu	37	3	9962642	9962642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:9962642C>T	uc003bua.2	+	7	1060	c.824C>T	c.(823-825)CCG>CTG	p.P275L	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_Intron|IL17RC_uc011ato.1_Intron|IL17RC_uc010hcs.2_Missense_Mutation_p.P179L|IL17RC_uc003btz.2_Missense_Mutation_p.P204L|IL17RC_uc011atp.1_Intron|IL17RC_uc003bud.2_Intron|IL17RC_uc003bub.2_Intron|IL17RC_uc010hct.2_Missense_Mutation_p.P204L|IL17RC_uc010hcu.2_Missense_Mutation_p.P204L|IL17RC_uc010hcv.2_Intron|IL17RC_uc011atq.1_Intron|IL17RC_uc003buc.2_5'UTR	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	275	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						AACAGCATCCCGAGCTGCTGG	0.607													16	38					0	0	0.014323	0	0
IRAK2	3656	broad.mit.edu	37	3	10268076	10268076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:10268076G>A	uc003bve.1	+	10	1307	c.1231G>A	c.(1231-1233)GGC>AGC	p.G411S		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	411	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GGTCCTCACGGGCATCCCTGC	0.537													13	28					0	0	0.006122	0	0
TATDN2	9797	broad.mit.edu	37	3	10320092	10320092	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:10320092C>T	uc003bvg.2	+	6	2672	c.2091C>T	c.(2089-2091)ATC>ATT	p.I697I	TATDN2_uc003bvf.2_Silent_p.I697I|TATDN2_uc011atr.1_Silent_p.I697I|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA|TATDN2_uc011atu.1_5'Flank|TATDN2_uc011atv.1_5'Flank|GHRLOS_uc011atw.1_5'Flank|GHRLOS_uc011atx.1_5'Flank|GHRLOS_uc011aty.1_5'Flank|GHRLOS_uc011atz.1_5'Flank|GHRLOS_uc011aua.1_5'Flank|GHRLOS_uc010hdl.2_5'Flank|GHRLOS_uc011aub.1_5'Flank|GHRLOS_uc010hdm.2_5'Flank|GHRLOS_uc011auc.1_5'Flank|GHRLOS_uc011aud.1_5'Flank|GHRLOS_uc011aue.1_5'Flank|GHRLOS_uc011auf.1_5'Flank|GHRLOS_uc011aug.1_5'Flank	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	697						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						TGAGGCAGATCCCACTGGAGA	0.592													84	177					0	0	0.014410	0	0
ATP2B2	491	broad.mit.edu	37	3	10401739	10401739	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:10401739G>A	uc003bvt.2	-	13	2167	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	ATP2B2_uc003bvv.2_Silent_p.F531F|ATP2B2_uc003bvw.2_Silent_p.F531F|ATP2B2_uc010hdo.2_Silent_p.F281F	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	576	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGTCCAGCACGAAGCCCAGCA	0.627													19	43					0	0	0.010504	0	0
PPARG	5468	broad.mit.edu	37	3	12447402	12447402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:12447402C>T	uc003bwx.2	+	5	732	c.641C>T	c.(640-642)CCA>CTA	p.P214L	PPARG_uc003bwr.2_Missense_Mutation_p.P186L|PPARG_uc003bws.2_Missense_Mutation_p.P186L|PPARG_uc003bwu.2_Missense_Mutation_p.P186L|PPARG_uc003bwv.2_Missense_Mutation_p.P186L|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Missense_Mutation_p.P186L|PPARG_uc003bwt.1_Missense_Mutation_p.P186L|PPARG_uc003bww.1_Missense_Mutation_p.P214L	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	214	Interaction with FAM120B (By similarity).			MP -> IA (in Ref. 3; BAA18949).	activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	GGGCGGATGCCACAGGCCGAG	0.532			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						149	293					0	0	0.014410	0	0
RAF1	5894	broad.mit.edu	37	3	12660162	12660162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:12660162G>A	uc003bxf.3	-	2	474	c.59C>T	c.(58-60)GCC>GTC	p.A20V	RAF1_uc011auu.1_5'UTR	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	20					activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	ATCAAACACGGCATCTTTGAA	0.453			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				30	47					0	0	0.010818	0	0
CHCHD4	131474	broad.mit.edu	37	3	14154485	14154485	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:14154485C>A	uc003byj.3	-	3	526	c.331G>T	c.(331-333)GAT>TAT	p.D111Y	CHCHD4_uc003byi.3_Missense_Mutation_p.D124Y	NM_001098502	NP_001091972	Q8N4Q1	MIA40_HUMAN	coiled-coil-helix-coiled-coil-helix domain	111	Asp/Glu-rich (acidic).				protein transport|transmembrane transport	mitochondrial intermembrane space					0						tcttcctcatcctcatcctct	0.373													9	13					5.68852e-11	6.27584e-11	0.004482	1	0
TMEM43	79188	broad.mit.edu	37	3	14175299	14175299	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:14175299C>T	uc003byk.2	+	7	827	c.573C>T	c.(571-573)TTC>TTT	p.F191F	TMEM43_uc003byl.1_Silent_p.F71F	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	191	Lumenal (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						GCAGGTTTTTCCTCTCGTCAG	0.587													60	95					0	0	0.014410	0	0
ZNF385D	79750	broad.mit.edu	37	3	21462748	21462748	+	Silent	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:21462748G>T	uc003cce.2	-	8	1554	c.1146C>A	c.(1144-1146)CCC>CCA	p.P382P		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	382						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						CGGTCCGAATGGGTCCAGGAG	0.468													11	27					3.27435e-08	3.59574e-08	0.002450	1	0
ARPP21	10777	broad.mit.edu	37	3	35781071	35781071	+	Splice_Site	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:35781071T>C	uc003cgb.2	+	17	2169	c.1905_splice	c.e17+2	p.Q635_splice	ARPP21_uc003cga.2_Splice_Site_p.Q616_splice|ARPP21_uc011axy.1_Splice_Site_p.Q636_splice|ARPP21_uc003cgf.2_Splice_Site_p.Q471_splice|ARPP21_uc003cgg.2_Splice_Site_p.Q158_splice	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD							cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CCTGCACAGGTAGGTGTGCTT	0.527													18	54					0	0	0.014323	0	0
ARPP21	10777	broad.mit.edu	37	3	35833997	35833997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:35833997C>T	uc003cgb.2	+	19	2420	c.2156C>T	c.(2155-2157)TCC>TTC	p.S719F	ARPP21_uc003cga.2_Missense_Mutation_p.S700F|ARPP21_uc011axy.1_Missense_Mutation_p.S720F|ARPP21_uc003cgf.2_Missense_Mutation_p.S555F|ARPP21_uc003cgg.2_Missense_Mutation_p.S242F	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	719	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GTGATGGTTTCCTACCCAACA	0.463													51	58					0	0	0.014410	0	0
STAC	6769	broad.mit.edu	37	3	36422186	36422186	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:36422186G>A	uc003cgh.1	+	1	90	c.51G>A	c.(49-51)AAG>AAA	p.K17K	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Silent_p.K17K	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	17					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						GGCTGCCCAAGGAGGCGGTGG	0.677													13	12					0	0	0.004007	0	0
DCLK3	85443	broad.mit.edu	37	3	36780021	36780021	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:36780021A>G	uc003cgi.2	-	2	621	c.130T>C	c.(130-132)TTT>CTT	p.F44L		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	44						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						GCCTTGCTAAACAGCCTGCTC	0.612													35	72					0	0	0.003755	0	0
TRANK1	9881	broad.mit.edu	37	3	36875022	36875022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:36875022C>T	uc003cgj.2	-	12	4572	c.4270G>A	c.(4270-4272)GAT>AAT	p.D1424N		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1974					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TAGCAGATATCAAGTGCTTCT	0.542													12	29					0	0	0.002450	0	0
DLEC1	9940	broad.mit.edu	37	3	38104186	38104186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:38104186C>T	uc003cho.1	+	5	1009	c.988C>T	c.(988-990)CCC>TCC	p.P330S	DLEC1_uc003chp.1_Missense_Mutation_p.P330S|DLEC1_uc010hgv.1_Missense_Mutation_p.P330S|DLEC1_uc010hgw.1_Missense_Mutation_p.P29S|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	330					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CCTAAAAAATCCCCGTTTTTT	0.458													34	47					0	0	0.012213	0	0
DLEC1	9940	broad.mit.edu	37	3	38141857	38141857	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:38141857C>T	uc003cho.1	+	19	2826	c.2805C>T	c.(2803-2805)GCC>GCT	p.A935A	DLEC1_uc003chp.1_Silent_p.A935A|DLEC1_uc010hgv.1_Silent_p.A935A|DLEC1_uc003chr.1_Silent_p.A41A|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	935					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CCTTGGAGGCCCTGCACTGCC	0.592													39	72					0	0	0.006230	0	0
SCN5A	6331	broad.mit.edu	37	3	38618268	38618268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:38618268G>A	uc003cio.2	-	19	3589	c.3395C>T	c.(3394-3396)CCA>CTA	p.P1132L	SCN5A_uc003cin.2_Missense_Mutation_p.P1131L|SCN5A_uc003cil.3_Missense_Mutation_p.P1132L|SCN5A_uc010hhi.2_Missense_Mutation_p.P1132L|SCN5A_uc010hhk.2_Missense_Mutation_p.P1131L|SCN5A_uc011ayr.1_Missense_Mutation_p.P1078L|SCN5A_uc010hhj.1_Missense_Mutation_p.P742L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1132					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ACTGTCCTCTGGGGTCTATGG	0.617													8	12					0	0	0.010729	0	0
SCN10A	6336	broad.mit.edu	37	3	38739464	38739464	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:38739464C>T	uc003ciq.2	-	27	5247	c.5247G>A	c.(5245-5247)GAG>GAA	p.E1749E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1749					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGTCAAACTTCTCCCAGGTCT	0.498													26	67					0	0	0.005443	0	0
SCN11A	11280	broad.mit.edu	37	3	38888901	38888901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:38888901C>T	uc011ays.1	-	26	4859	c.4660G>A	c.(4660-4662)GAT>AAT	p.D1554N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1554	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGCAGGGAATCCCAACCTGCT	0.468													8	63					0	0	0.004482	0	0
SCN11A	11280	broad.mit.edu	37	3	38889188	38889188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:38889188G>A	uc011ays.1	-	26	4572	c.4373C>T	c.(4372-4374)CCT>CTT	p.P1458L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1458	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GAGCGTCGGAGGGAAAGGAAT	0.493													17	9					0	0	0.007413	0	0
XIRP1	165904	broad.mit.edu	37	3	39227331	39227331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:39227331C>T	uc003cjk.1	-	2	3827	c.3606G>A	c.(3604-3606)ATG>ATA	p.M1202I	XIRP1_uc003cji.2_Intron|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1202							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCCCCCAGGCCATCTGTGTGC	0.687													14	37					0	0	0.004007	0	0
XIRP1	165904	broad.mit.edu	37	3	39229316	39229316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:39229316C>T	uc003cjk.1	-	2	1842	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	XIRP1_uc003cji.2_Missense_Mutation_p.E541K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	541	Interaction with CTNNB1 (By similarity).						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCCACCACTTCCTGCCGGGTG	0.607													21	53					0	0	0.012319	0	0
HHATL	57467	broad.mit.edu	37	3	42738519	42738519	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:42738519G>A	uc003clw.2	-	9	1131	c.984C>T	c.(982-984)ATC>ATT	p.I328I	HHATL_uc003clx.2_Silent_p.I328I	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	328					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		AGAGTGCGGTGATGCACTTGG	0.627													16	34					0	0	0.007413	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916831	42916831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:42916831C>T	uc003cmh.2	-	1	803	c.478G>A	c.(478-480)GAT>AAT	p.D160N	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.D160N	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	160					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CAACTGGCATCCAGACTCCAG	0.522													31	46					0	0	0.008361	0	0
CLEC3B	7123	broad.mit.edu	37	3	45077104	45077104	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:45077104C>T	uc003cok.3	+	3	393	c.297C>T	c.(295-297)ATC>ATT	p.I99I	CLEC3B_uc003col.2_Silent_p.I57I	NM_003278	NP_003269	P05452	TETN_HUMAN	C-type lectin domain family 3, member B	99	C-type lectin.				skeletal system development	extracellular space	protein binding|sugar binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00863)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGACTGCATCTCGCGCGGGG	0.642													18	38					0	0	0.006122	0	0
CLEC3B	7123	broad.mit.edu	37	3	45077106	45077106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:45077106C>T	uc003cok.3	+	3	395	c.299C>T	c.(298-300)TCG>TTG	p.S100L	CLEC3B_uc003col.2_Missense_Mutation_p.S58L	NM_003278	NP_003269	P05452	TETN_HUMAN	C-type lectin domain family 3, member B	100	C-type lectin.				skeletal system development	extracellular space	protein binding|sugar binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00863)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GACTGCATCTCGCGCGGGGGC	0.637													18	38					0	0	0.006122	0	0
CCR5	1234	broad.mit.edu	37	3	46414449	46414449	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:46414449C>G	uc003cpo.3	+	3	178	c.56C>G	c.(55-57)CCC>CGC	p.P19R	CCR5_uc010hjd.2_Missense_Mutation_p.P19R	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	19	Extracellular (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	ACATCGGAGCCCTGCCAAAAA	0.423													83	128					0	0	0.014410	0	0
LTF	4057	broad.mit.edu	37	3	46497331	46497331	+	Missense_Mutation	SNP	G	A	A	rs146006710		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:46497331G>A	uc003cpq.2	-	4	492	c.454C>T	c.(454-456)CGT>TGT	p.R152C	LTF_uc003fzr.2_Missense_Mutation_p.R108C|LTF_uc010hjh.2_Missense_Mutation_p.R152C|LTF_uc003cpr.2_Missense_Mutation_p.R139C	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	152	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	AAGAATGGACGAAGTGTCCCT	0.572													25	22					0	0	0.002780	0	0
TDGF1	6997	broad.mit.edu	37	3	46620795	46620795	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:46620795G>A	uc003cpv.2	+	3	442	c.162G>A	c.(160-162)CAG>CAA	p.Q54Q	LRRC2_uc003cpu.3_Intron	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	54					activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TTTGGCCCCAGGAGGAGCCTG	0.562													18	38					0	0	0.008871	0	0
SETD2	29072	broad.mit.edu	37	3	47158225	47158225	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:47158225G>A	uc003cqs.2	-	4	4527	c.4474C>T	c.(4474-4476)CGA>TGA	p.R1492*	SETD2_uc003cqv.2_Nonsense_Mutation_p.R1481*	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1492					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding	p.R989*(1)		kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TTAATATCTCGATGAGATTTA	0.313			N|F|S|Mis		clear cell renal carcinoma								22	36					0	0	0.014323	0	0
SCAP	22937	broad.mit.edu	37	3	47458865	47458865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:47458865C>T	uc003crh.1	-	17	3154	c.2899G>A	c.(2899-2901)GAG>AAG	p.E967K	SCAP_uc011baz.1_Missense_Mutation_p.E711K|SCAP_uc003crg.2_Missense_Mutation_p.E574K	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	967	Interaction with SREBF2 (By similarity).|Cytoplasmic (By similarity).|WD 2.				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		ATGGAACCCTCGGCACTGGGG	0.716													4	8					0	0	0.000602	0	0
MAP4	4134	broad.mit.edu	37	3	47917353	47917353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:47917353G>A	uc003csb.2	-	10	2670	c.2144C>T	c.(2143-2145)TCG>TTG	p.S715L	MAP4_uc003csc.3_Missense_Mutation_p.S715L|MAP4_uc011bbf.1_Missense_Mutation_p.S692L|MAP4_uc003crx.2_5'UTR|MAP4_uc011bbe.1_Intron|MAP4_uc003cry.2_Missense_Mutation_p.S450L|MAP4_uc003csa.3_Missense_Mutation_p.S450L|MAP4_uc003crz.3_RNA|MAP4_uc003csd.2_Missense_Mutation_p.S450L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	715					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TTTGGCTTTCGATGTTGAAGT	0.423													64	173					0	0	0.014410	0	0
SLC26A6	65010	broad.mit.edu	37	3	48669454	48669454	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:48669454G>A	uc003cuh.2	-	6	709	c.609C>T	c.(607-609)TTC>TTT	p.F203F	CELSR3_uc003cuf.1_Silent_p.F3608F|SLC26A6_uc003cug.2_Silent_p.F182F|SLC26A6_uc010hke.2_Silent_p.F54F|SLC26A6_uc003cuk.2_Intron|SLC26A6_uc003cui.2_Silent_p.F203F|SLC26A6_uc003cuj.2_Silent_p.F203F|SLC26A6_uc011bbp.1_Missense_Mutation_p.R169W	NM_022911	NP_075062	Q9BXS9	S26A6_HUMAN	solute carrier family 26, member 6 isoform 1	203	Helical; (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00609)		CCACGAAGCCGAAGTGGATCA	0.612													18	95					0	0	0.008871	0	0
CELSR3	1951	broad.mit.edu	37	3	48677320	48677320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:48677320C>T	uc003cul.2	-	34	9979	c.9698G>A	c.(9697-9699)GGC>GAC	p.G3233D	CELSR3_uc003cuf.1_Missense_Mutation_p.G3331D|CELSR3_uc010hkf.2_Missense_Mutation_p.G523D|CELSR3_uc010hkg.2_Missense_Mutation_p.G1216D	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3233	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ATGGCTGGGGCCACTGACCGA	0.612													45	91					0	0	0.014410	0	0
CELSR3	1951	broad.mit.edu	37	3	48694669	48694669	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:48694669G>A	uc003cul.2	-	2	4142	c.3861C>T	c.(3859-3861)TTC>TTT	p.F1287F	CELSR3_uc003cuf.1_Silent_p.F1357F	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1287	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCGGTGACAGGAAGCGCTCCT	0.637													8	12					0	0	0.003080	0	0
CELSR3	1951	broad.mit.edu	37	3	48698246	48698246	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:48698246G>A	uc003cul.2	-	1	2103	c.1822C>T	c.(1822-1824)CTG>TTG	p.L608L	CELSR3_uc003cuf.1_Silent_p.L678L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	608	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TCGAAGTCCAGAGGTGCCACC	0.607													13	17					0	0	0.001855	0	0
WDR6	11180	broad.mit.edu	37	3	49049302	49049302	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:49049302T>G	uc003cvj.2	+	2	563	c.425T>G	c.(424-426)CTG>CGG	p.L142R	WDR6_uc011bbx.1_Intron|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Missense_Mutation_p.L86R|WDR6_uc011bbz.1_Missense_Mutation_p.L61R	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	112	WD 1.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		CGCTCTGGCCTGTGGAACATG	0.547													31	69					0	0	0.012213	0	0
USP19	10869	broad.mit.edu	37	3	49148460	49148460	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:49148460G>A	uc003cwd.1	-	22	3320	c.3159C>T	c.(3157-3159)GCC>GCT	p.A1053A	USP19_uc003cwa.2_Silent_p.A861A|USP19_uc003cvz.3_Silent_p.A1156A|USP19_uc011bcg.1_Silent_p.A1144A|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Silent_p.A811A|USP19_uc011bch.1_Silent_p.A1154A	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	1053	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGCCGGCCCGGGCAGCCTCAC	0.617													27	56					0	0	0.005443	0	0
USP19	10869	broad.mit.edu	37	3	49149122	49149122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:49149122G>A	uc003cwd.1	-	20	2880	c.2719C>T	c.(2719-2721)CCC>TCC	p.P907S	USP19_uc003cwa.2_Missense_Mutation_p.P715S|USP19_uc003cvz.3_Missense_Mutation_p.P1010S|USP19_uc011bcg.1_Missense_Mutation_p.P998S|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Missense_Mutation_p.P665S|USP19_uc011bch.1_Missense_Mutation_p.P1008S	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	907	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGCTGAATGGGGTCTCTCTCG	0.667													22	30					0	0	0.012319	0	0
SEMA3F	6405	broad.mit.edu	37	3	50211350	50211351	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:50211350_50211351CC>TT	uc003cyj.2	+	3	435_436	c.237_238CC>TT	c.(235-240)TCCCTG>TCTTTG	p.79_80SL>SL	SEMA3F_uc003cyk.2_Silent_p.79_80SL>SL	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	79_80	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		ACGTGCTGTCCCTGGACCTGCA	0.604													23	40					0	0	0.004672	0	0
SEMA3F	6405	broad.mit.edu	37	3	50211681	50211681	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:50211681C>T	uc003cyj.2	+	5	552	c.354C>T	c.(352-354)TTC>TTT	p.F118F	SEMA3F_uc003cyk.2_Silent_p.F118F	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	118	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		GTGGGAACTTCGTCAGGCTCA	0.647													9	55					0	0	0.006214	0	0
SEMA3B	7869	broad.mit.edu	37	3	50313183	50313183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:50313183G>A	uc003cyu.2	+	18	1995	c.1753G>A	c.(1753-1755)GGC>AGC	p.G585S	SEMA3B_uc003cyt.2_Missense_Mutation_p.G584S|SEMA3B_uc003cyv.2_Missense_Mutation_p.G472S|SEMA3B_uc003cyw.2_Missense_Mutation_p.G308S|SEMA3B_uc010hli.2_Missense_Mutation_p.G477S|SEMA3B_uc003cyx.2_Missense_Mutation_p.G471S|SEMA3B_uc003cyy.2_Missense_Mutation_p.G242S|SEMA3B_uc011bdo.1_Missense_Mutation_p.G242S	NM_004636	NP_004627	Q13214	SEM3B_HUMAN	semaphorin 3B isoform 1 precursor	585	Ig-like C2-type.				axon guidance|cell-cell signaling	endoplasmic reticulum|extracellular region|membrane	receptor activity			lung(2)|central_nervous_system(2)|kidney(1)|skin(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		CGGCGTGGAGGGCAGCAGCGC	0.652													10	24					0	0	0.008291	0	0
TMEM115	11070	broad.mit.edu	37	3	50395886	50395886	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:50395886T>C	uc003dan.1	-	1	1054	c.609A>G	c.(607-609)GTA>GTG	p.V203V		NM_007024	NP_008955	Q12893	TM115_HUMAN	PL6 protein	203	Helical; (Potential).				negative regulation of cell proliferation	Golgi apparatus|integral to membrane|nucleus					0				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		AGCGAAGATATACCCAACTGG	0.517													10	29					0	0	0.010729	0	0
DOCK3	1795	broad.mit.edu	37	3	51393867	51393867	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:51393867C>T	uc011bds.1	+	43	4469	c.4446C>T	c.(4444-4446)ACC>ACT	p.T1482T		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1482	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CCACACTGACCCTGACCCACA	0.542													30	92					0	0	0.013726	0	0
TLR9	54106	broad.mit.edu	37	3	52256018	52256018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:52256018C>T	uc003dda.1	-	2	2948	c.2314G>A	c.(2314-2316)GAC>AAC	p.D772N	TLR9_uc003ddb.2_Missense_Mutation_p.D869N	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	772	LRR 26.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	AGCAGGAAGTCCATAAAGGCC	0.642													18	32					0	0	0.007413	0	0
GLYCTK	132158	broad.mit.edu	37	3	52324538	52324538	+	Silent	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:52324538C>A	uc003ddo.2	+	2	276	c.180C>A	c.(178-180)TCC>TCA	p.S60S	GLYCTK_uc003ddq.2_Silent_p.S60S|GLYCTK_uc003ddm.2_Intron|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddp.1_Silent_p.S60S|GLYCTK_uc003ddr.2_5'Flank	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	60					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		GGGCACTATCCTTGGACCCTG	0.622													15	25					2.32078e-09	2.55566e-09	0.003163	1	0
DNAH1	25981	broad.mit.edu	37	3	52407021	52407021	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:52407021T>C	uc011bef.1	+	44	7198	c.6937T>C	c.(6937-6939)TTG>CTG	p.L2313L		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2313	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CATCGAGCTGTTGCGCCAGTG	0.612													22	23					0	0	0.014323	0	0
CACNA1D	776	broad.mit.edu	37	3	53842739	53842739	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:53842739C>G	uc003dgv.3	+	46	5976	c.5813C>G	c.(5812-5814)CCG>CGG	p.P1938R	CACNA1D_uc003dgu.3_Missense_Mutation_p.P1958R|CACNA1D_uc003dgy.3_Missense_Mutation_p.P1914R|CACNA1D_uc003dgw.3_Missense_Mutation_p.P1605R|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1938	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GAAGAGGTCCCGTCGTCTCCC	0.627													3	84					0	0	0.004672	0	0
CHDH	55349	broad.mit.edu	37	3	53853579	53853579	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:53853579T>C	uc003dgz.2	-	7	1683	c.1243A>G	c.(1243-1245)ACC>GCC	p.T415A		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	415					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	TCCTGCTGGGTGGGGACCCGC	0.617													36	80					0	0	0.009718	0	0
ERC2	26059	broad.mit.edu	37	3	55922538	55922538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:55922538C>T	uc003dhr.1	-	14	2699	c.2443G>A	c.(2443-2445)GAA>AAA	p.E815K	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Missense_Mutation_p.E294K	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	815	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCATCCAGTTCCTGTCTGGTC	0.512													79	144					0	0	0.014410	0	0
KCTD6	200845	broad.mit.edu	37	3	58486760	58486761	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:58486760_58486761GG>AA	uc003dkj.3	+	3	232_233	c.115_116GG>AA	c.(115-117)GGA>AAA	p.G39K	KCTD6_uc003dki.3_Missense_Mutation_p.G39K|KCTD6_uc003dkk.3_Missense_Mutation_p.G39K	NM_001128214	NP_001121686	Q8NC69	KCTD6_HUMAN	potassium channel tetramerisation domain	39	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000177)|Kidney(10;0.00229)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.148)		TTCCATGCTTGGAGCTATGTTT	0.455													36	117					0	0	0.004672	0	0
PTPRG	5793	broad.mit.edu	37	3	62142809	62142809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:62142809C>T	uc003dlb.2	+	7	1470	c.751C>T	c.(751-753)CGG>TGG	p.R251W	PTPRG_uc003dlc.2_Missense_Mutation_p.R251W	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	251	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		CAGCTATTATCGGTACACAGG	0.512													39	74					0	0	0.006230	0	0
CADPS	8618	broad.mit.edu	37	3	62503824	62503824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:62503824C>T	uc003dll.2	-	14	2753	c.2393G>A	c.(2392-2394)AGG>AAG	p.R798K	CADPS_uc003dlk.1_Missense_Mutation_p.R302K|CADPS_uc003dlm.2_Missense_Mutation_p.R798K|CADPS_uc003dln.2_Missense_Mutation_p.R781K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	798	Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AGATCCTTACCTAAAATGTGT	0.398													17	63					0	0	0.006122	0	0
CADPS	8618	broad.mit.edu	37	3	62535633	62535633	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:62535633T>C	uc003dll.2	-	11	2271	c.1911A>G	c.(1909-1911)AAA>AAG	p.K637K	CADPS_uc003dlk.1_Silent_p.K141K|CADPS_uc003dlm.2_Silent_p.K637K|CADPS_uc003dln.2_Silent_p.K637K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	637					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TGGCGTTGAGTTTCTGGACTT	0.507													53	78					0	0	0.014410	0	0
FAM19A4	151647	broad.mit.edu	37	3	68788229	68788229	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:68788229C>T	uc003dnh.1	-	5	851	c.408G>A	c.(406-408)ACG>ACA	p.T136T	FAM19A4_uc003dni.1_Silent_p.T136T	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	136						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		TACTTGCCTTCGTAGTTTTGA	0.408													12	70					0	0	0.001855	0	0
LMOD3	56203	broad.mit.edu	37	3	69168726	69168726	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:69168726C>T	uc003dns.2	-	2	989	c.780G>A	c.(778-780)CTG>CTA	p.L260L	LMOD3_uc003dnt.2_Silent_p.L260L	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	260						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		CAATGTTGTTCAGGTTGAGTT	0.408													71	135					0	0	0.014410	0	0
GXYLT2	727936	broad.mit.edu	37	3	73004310	73004310	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:73004310C>A	uc003dpg.2	+	4	662	c.662C>A	c.(661-663)CCT>CAT	p.P221H		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	221	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						TTTCTGAGACCTGTTGATGAC	0.517													17	32					2.23348e-06	2.44894e-06	0.004007	1	0
MIR1324	100302212	broad.mit.edu	37	3	75679957	75679957	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:75679957C>T	hsa-mir-1324|MI0006657	+			c.44C>T																				0						CACTGGGAACCCCCTTCCCTC	0.527													6	90					0	0	0.004482	0	0
HTR1F	3355	broad.mit.edu	37	3	88040765	88040765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:88040765G>A	uc003dqr.2	+	2	1024	c.866G>A	c.(865-867)CGG>CAG	p.R289Q		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	289	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	ACAAGAGAACGGAAAGCAGCC	0.378													20	21					0	0	0.003330	0	0
EPHA6	285220	broad.mit.edu	37	3	96706570	96706570	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:96706570C>T	uc010how.1	+	3	890	c.847C>T	c.(847-849)CAA>TAA	p.Q283*	EPHA6_uc003drp.1_Nonsense_Mutation_p.Q283*	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	188	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TCTGGCTTTTCAAGACATTGG	0.458													9	238					0	0	0.006214	0	0
EPHA6	285220	broad.mit.edu	37	3	96706657	96706657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:96706657C>T	uc010how.1	+	3	977	c.934C>T	c.(934-936)CCT>TCT	p.P312S	EPHA6_uc003drp.1_Missense_Mutation_p.P312S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	217	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGCCATGTTTCCTGATACCAT	0.468													9	173					0	0	0.006214	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806209	97806209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:97806209C>T	uc011bgs.1	+	1	193	c.193C>T	c.(193-195)CTT>TTT	p.L65F		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTACTTATTCCTTGGTGGTTT	0.433													6	153					0	0	0.001984	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806859	97806859	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:97806859G>A	uc011bgs.1	+	1	843	c.843G>A	c.(841-843)ACG>ACA	p.T281T		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTTTTACACGATTATAATTC	0.378													6	49					0	0	0.001168	0	0
OR5H2	79310	broad.mit.edu	37	3	98001872	98001872	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:98001872C>T	uc003dsj.1	+	1	141	c.141C>T	c.(139-141)AAC>AAT	p.N47N		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTGTGTGGAACCTTGGTCTGA	0.428													99	96					0	0	0.014410	0	0
OR5K4	403278	broad.mit.edu	37	3	98073291	98073291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:98073291G>A	uc011bgv.1	+	1	594	c.594G>A	c.(592-594)ATG>ATA	p.M198I		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	198	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ATGAACTAATGATATATATCT	0.328													22	24					0	0	0.010504	0	0
OR5K1	26339	broad.mit.edu	37	3	98188480	98188480	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:98188480C>T	uc003dsm.2	+	1	60	c.60C>T	c.(58-60)CAC>CAT	p.H20H		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TTACAGATCACCCTGAGCTGA	0.418													58	38					0	0	0.014410	0	0
FILIP1L	11259	broad.mit.edu	37	3	99567727	99567727	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:99567727C>T	uc003dtm.2	-	5	3256	c.2793G>A	c.(2791-2793)ACG>ACA	p.T931T	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Silent_p.T931T|FILIP1L_uc010hpf.2_Silent_p.T507T|FILIP1L_uc010hpg.2_Silent_p.T691T|FILIP1L_uc003dtn.2_Silent_p.T691T|FILIP1L_uc003dtp.1_Silent_p.T691T	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	931						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						CTGCAGTACTCGTGTAAGAGT	0.473													52	168					0	0	0.014410	0	0
LNP1	348801	broad.mit.edu	37	3	100170717	100170717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:100170717C>T	uc003dtx.3	+	3	1591	c.311C>T	c.(310-312)TCC>TTC	p.S104F	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	104											0						AAAGGAAGATCCCATTCCAAA	0.433													5	54					0	0	0.001168	0	0
CBLB	868	broad.mit.edu	37	3	105397331	105397331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:105397331G>A	uc003dwc.2	-	17	2835	c.2513C>T	c.(2512-2514)CCT>CTT	p.P838L	CBLB_uc003dwa.2_Missense_Mutation_p.P53L|CBLB_uc011bhi.1_Missense_Mutation_p.P816L	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	838	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GGAGCCAGGAGGTTTTGAATG	0.468			Mis S		AML								26	20					0	0	0.006320	0	0
CCDC54	84692	broad.mit.edu	37	3	107097085	107097085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:107097085G>A	uc003dwi.1	+	1	898	c.651G>A	c.(649-651)ATG>ATA	p.M217I		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	217											0						CTCCCCAAATGAAAACTCTGA	0.393													23	21					0	0	0.014323	0	0
MYH15	22989	broad.mit.edu	37	3	108178230	108178230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:108178230G>A	uc003dxa.1	-	19	2116	c.2059C>T	c.(2059-2061)CCC>TCC	p.P687S		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	687	Myosin head-like.|Actin-binding (By similarity).					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTCACATTGGGATTTATGCAT	0.289													21	21					0	0	0.003330	0	0
RETNLB	84666	broad.mit.edu	37	3	108475404	108475404	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:108475404G>A	uc003dxh.2	-	2	257	c.159C>T	c.(157-159)CTC>CTT	p.L53L		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	53					cell proliferation	extracellular region	hormone activity			skin(1)	1						TAGCACACGAGAGCTTCTTGC	0.527													6	44					0	0	0.003080	0	0
DPPA4	55211	broad.mit.edu	37	3	109047910	109047910	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:109047910C>T	uc003dxq.3	-	6	760	c.705G>A	c.(703-705)GGG>GGA	p.G235G	DPPA4_uc011bho.1_Missense_Mutation_p.E137K	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	235						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GGAGACTTTTCCCATGGACCA	0.522													8	11					0	0	0.006214	0	0
SIDT1	54847	broad.mit.edu	37	3	113285348	113285348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:113285348G>A	uc003eak.2	+	2	955	c.304G>A	c.(304-306)GAG>AAG	p.E102K	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.E102K|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	102	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CCAGCAGAAAGAGGTGCTGTC	0.493													47	39					0	0	0.014410	0	0
KIAA1407	57577	broad.mit.edu	37	3	113737698	113737698	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:113737698G>A	uc003eax.2	-	8	1137	c.990C>T	c.(988-990)TTC>TTT	p.F330F	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Silent_p.F308F|KIAA1407_uc011bip.1_Silent_p.F317F	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	330										ovary(2)	2						GCCAGGCAGCGAAATACCGTT	0.488													10	166					0	0	0.013537	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069569	114069569	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:114069569G>A	uc003ebi.2	-	4	1536	c.1356C>T	c.(1354-1356)TCC>TCT	p.S452S	ZBTB20_uc003ebj.2_Silent_p.S379S|ZBTB20_uc010hqp.2_Silent_p.S379S|ZBTB20_uc003ebk.2_Silent_p.S379S|ZBTB20_uc003ebl.2_Silent_p.S379S|ZBTB20_uc003ebm.2_Silent_p.S379S|ZBTB20_uc003ebn.2_Silent_p.S379S|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	452					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CGCTCTTGTCGGAGCTGTTGC	0.542													4	46					0	0	0.000602	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119120819	119120819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:119120819C>T	uc003ecj.3	+	10	1752	c.1220C>T	c.(1219-1221)GCT>GTT	p.A407V		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	407					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						CCTCCCGGGGCTGAGGGTGGC	0.627													24	21					0	0	0.005443	0	0
POPDC2	64091	broad.mit.edu	37	3	119378809	119378809	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:119378809G>A	uc003ecx.1	-	1	596	c.462C>T	c.(460-462)ATC>ATT	p.I154I	POPDC2_uc010hqw.1_Silent_p.I154I|POPDC2_uc003ecy.1_5'UTR	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	154						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		ACAGGCGGTTGATGGGTGTCT	0.532													41	35					0	0	0.008740	0	0
C3orf15	89876	broad.mit.edu	37	3	119449180	119449180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:119449180G>A	uc003ede.3	+	8	1051	c.974G>A	c.(973-975)GGA>GAA	p.G325E	C3orf15_uc010hqy.1_Missense_Mutation_p.G325E|C3orf15_uc010hqz.2_Missense_Mutation_p.G263E|C3orf15_uc011bjd.1_Missense_Mutation_p.G199E|C3orf15_uc011bje.1_Missense_Mutation_p.G305E|C3orf15_uc010hra.1_Missense_Mutation_p.G86E	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	325						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CTGCAGGAGGGAAAAGAGGCA	0.443													38	80					0	0	0.004878	0	0
POLQ	10721	broad.mit.edu	37	3	121178949	121178949	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:121178949T>G	uc003eee.3	-	25	7229	c.7100A>C	c.(7099-7101)AAG>ACG	p.K2367T	POLQ_uc003eed.2_Missense_Mutation_p.K1539T	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	2367					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CTCAATCATCTTCCACTCTGC	0.428								DNA_polymerases_(catalytic_subunits)					38	45					0	0	0.009718	0	0
CASR	846	broad.mit.edu	37	3	122003081	122003081	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:122003081C>T	uc003eev.3	+	7	2652	c.2280C>T	c.(2278-2280)ATC>ATT	p.I760I	CASR_uc003eew.3_Silent_p.I770I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	760	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGGATGAGATCATCTTCATCA	0.567													17	15					0	0	0.006122	0	0
PARP9	83666	broad.mit.edu	37	3	122255868	122255868	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:122255868G>A	uc010hri.2	-	9	2068	c.1923C>T	c.(1921-1923)ATC>ATT	p.I641I	PARP9_uc003eff.3_Silent_p.I606I|PARP9_uc011bjs.1_Silent_p.I606I|PARP9_uc003efg.2_Silent_p.I186I|PARP9_uc003efi.2_Silent_p.I606I|PARP9_uc003efh.2_Silent_p.I641I|PARP9_uc003efj.2_Silent_p.I606I	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	641	PARP catalytic.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TCAGAAATATGATATTTTCTT	0.353													47	55					0	0	0.014410	0	0
PARP9	83666	broad.mit.edu	37	3	122274437	122274437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:122274437G>A	uc010hri.2	-	4	831	c.686C>T	c.(685-687)ACT>ATT	p.T229I	PARP9_uc003eff.3_Missense_Mutation_p.T194I|PARP9_uc011bjs.1_Missense_Mutation_p.T194I|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Missense_Mutation_p.T194I|PARP9_uc003efh.2_Missense_Mutation_p.T229I|PARP9_uc003efj.2_Missense_Mutation_p.T194I	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	229	Macro 1.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		CTTAATGTGAGTATTTTTATA	0.423													18	25					0	0	0.006122	0	0
KALRN	8997	broad.mit.edu	37	3	124209691	124209691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:124209691C>T	uc003ehg.2	+	30	4668	c.4541C>T	c.(4540-4542)TCT>TTT	p.S1514F	KALRN_uc010hrv.1_Missense_Mutation_p.S1505F|KALRN_uc003ehf.1_Missense_Mutation_p.S1514F|KALRN_uc011bjy.1_Missense_Mutation_p.S1505F	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1514	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ATCAAAGATTCTTCAGGACAC	0.502													28	34					0	0	0.006320	0	0
HEG1	57493	broad.mit.edu	37	3	124731583	124731583	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:124731583G>T	uc003ehs.3	-	6	2908	c.2840C>A	c.(2839-2841)TCT>TAT	p.S947Y	HEG1_uc011bke.1_Missense_Mutation_p.S1047Y	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	947	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GGGAGAAGGAGATGTTCCGAG	0.507													16	8					8.60227e-14	9.511e-14	0.004007	1	0
ALG1L	200810	broad.mit.edu	37	3	125648252	125648252	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:125648252C>T	uc003eig.1	-	6	671	c.507G>A	c.(505-507)CGG>CGA	p.R169R	LOC100125556_uc003eif.3_RNA|LOC100125556_uc003eid.3_RNA|LOC100125556_uc003eie.3_RNA	NM_001015050	NP_001015050	Q6GMV1	ALG1L_HUMAN	asparagine-linked glycosylation 1-like	169							transferase activity, transferring glycosyl groups				0						AGCAGGGGTCCCGGGGTTTTA	0.597													17	14					0	0	0.012319	0	0
C3orf22	152065	broad.mit.edu	37	3	126268752	126268752	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:126268752G>A	uc003ejb.2	-	4	714	c.385C>T	c.(385-387)CAG>TAG	p.Q129*		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	129											0				GBM - Glioblastoma multiforme(114;0.147)		TTGCTGGTCTGGGGGCAGGCA	0.627													4	24					0	0	0.009096	0	0
CPNE4	131034	broad.mit.edu	37	3	131418796	131418796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:131418796G>A	uc003eok.2	-	4	824	c.389C>T	c.(388-390)TCC>TTC	p.S130F	CPNE4_uc011blq.1_Missense_Mutation_p.S148F|CPNE4_uc003eol.2_Missense_Mutation_p.S148F|CPNE4_uc003eom.2_Missense_Mutation_p.S130F	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	130	C2 1.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CTTCAGCAAGGATTTGGACAG	0.448													10	12					0	0	0.008291	0	0
ACPL2	92370	broad.mit.edu	37	3	141006222	141006222	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:141006222C>T	uc003etu.2	+	7	731	c.432C>T	c.(430-432)TTC>TTT	p.F144F	ACPL2_uc003etv.2_Silent_p.F144F|ACPL2_uc011bna.1_Silent_p.F106F|ACPL2_uc011bnb.1_Silent_p.F127F	NM_152282	NP_689495	Q8TE99	ACPL2_HUMAN	acid phosphatase-like 2 precursor	144						extracellular region	acid phosphatase activity			skin(1)	1						GAGCCTCTTTCGAAAGCCCCT	0.493													5	118					0	0	0.001168	0	0
RASA2	5922	broad.mit.edu	37	3	141291480	141291480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:141291480C>T	uc003etz.1	+	12	1199	c.1199C>T	c.(1198-1200)TCC>TTC	p.S400F	RASA2_uc010huq.1_Missense_Mutation_p.S400F|RASA2_uc003eua.1_Missense_Mutation_p.S400F|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	400	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						AGAGGAAATTCCCTGGCTACC	0.343													18	22					0	0	0.007413	0	0
PLSCR2	57047	broad.mit.edu	37	3	146167009	146167009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:146167009C>T	uc003evv.1	-	7	962	c.629G>A	c.(628-630)GGT>GAT	p.G210D	PLSCR2_uc003evw.1_Missense_Mutation_p.G279D	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	210	Helical; (Potential).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						GAAACAGGCACCAATCATCAC	0.373													46	37					0	0	0.014410	0	0
CPA3	1359	broad.mit.edu	37	3	148596253	148596253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:148596253G>A	uc003ewm.2	+	4	347	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	99					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TCTACAAGAAGAGATTGAGAA	0.343													25	29					0	0	0.008361	0	0
MED12L	116931	broad.mit.edu	37	3	151105621	151105621	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:151105621G>A	uc003eyp.2	+	35	5045	c.5007G>A	c.(5005-5007)CAG>CAA	p.Q1669Q	MED12L_uc011bnz.1_Silent_p.Q1529Q|MED12L_uc003eyy.1_Silent_p.Q832Q	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1669					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTACGAAGCAGAAGGTGTCCC	0.522													35	55					0	0	0.006999	0	0
IGSF10	285313	broad.mit.edu	37	3	151155680	151155680	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:151155680G>A	uc011bod.1	-	6	6669	c.6669C>T	c.(6667-6669)ACC>ACT	p.T2223T	IGSF10_uc011bob.1_Silent_p.T250T|IGSF10_uc011boc.1_Silent_p.T202T	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2223	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGTACATTTTGGTGTCATCCC	0.418													17	69					0	0	0.004007	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598919	151598919	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:151598919C>T	uc003ezf.1	+	3	687	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	196	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	TGTTGGGGTTCCTTATTCCTC	0.423													42	51					0	0	0.006230	0	0
SGEF	26084	broad.mit.edu	37	3	153909170	153909170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:153909170C>T	uc011bog.1	+	8	1944	c.1733C>T	c.(1732-1734)CCC>CTC	p.P578L	SGEF_uc011boh.1_Missense_Mutation_p.P578L	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	578	DH.				regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CTCATTCTCCCCATGCAGAGG	0.463													12	25					0	0	0.013537	0	0
GPR149	344758	broad.mit.edu	37	3	154147351	154147351	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:154147351C>T	uc003faa.2	-	1	154	c.54G>A	c.(52-54)GAG>GAA	p.E18E		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	18	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			AATTATGATTCTCTTTCCACA	0.373													19	62					0	0	0.010504	0	0
PLCH1	23007	broad.mit.edu	37	3	155200219	155200219	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:155200219T>C	uc011bok.1	-	23	3897	c.3620A>G	c.(3619-3621)AAC>AGC	p.N1207S	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.N1169S	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1207					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGCCTGATTGTTGGTCTCATC	0.453													29	36					0	0	0.013726	0	0
MFSD1	64747	broad.mit.edu	37	3	158539415	158539415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:158539415C>T	uc003fcl.1	+	10	923	c.893C>T	c.(892-894)TCT>TTT	p.S298F	MFSD1_uc003fcm.1_RNA|MFSD1_uc003fcn.1_Missense_Mutation_p.S201F|MFSD1_uc011bow.1_Missense_Mutation_p.S259F|MFSD1_uc011box.1_Missense_Mutation_p.S225F	NM_022736	NP_073573	Q9H3U5	MFSD1_HUMAN	major facilitator superfamily domain containing	298					transmembrane transport	integral to membrane					0			Lung(72;0.00372)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TTTGGATTTTCTTCCCAGGCA	0.284													32	57					0	0	0.006999	0	0
SMC4	10051	broad.mit.edu	37	3	160118641	160118641	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:160118641C>T	uc003fdh.2	+	2	140	c.27C>T	c.(25-27)TCC>TCT	p.S9S	IFT80_uc003fda.2_Intron|IFT80_uc011boy.1_5'Flank|IFT80_uc003fdd.1_5'Flank|IFT80_uc003fde.1_5'Flank|SMC4_uc003fdf.1_RNA|SMC4_uc003fdg.1_Silent_p.S9S|SMC4_uc010hwc.1_5'UTR|SMC4_uc003fdi.2_Silent_p.S9S|SMC4_uc003fdj.2_Silent_p.S9S|SMC4_uc010hwd.2_Silent_p.S9S	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	9					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CCCAGCCCTCCACTGCCCGGC	0.786													5	5					0	0	0.001168	0	0
SI	6476	broad.mit.edu	37	3	164735365	164735365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:164735365C>T	uc003fei.2	-	31	3792	c.3730G>A	c.(3730-3732)GAC>AAC	p.D1244N		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1244	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACCATAGCGTCATATAATTCC	0.348										HNSCC(35;0.089)			4	26					0	0	0.009096	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907791	164907791	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:164907791C>T	uc003fej.3	-	2	1272	c.828G>A	c.(826-828)AGG>AGA	p.R276R	SLITRK3_uc003fek.2_Silent_p.R276R	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	276	LRRCT 1.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GTTCTGTCTTCCTGATTTCTC	0.483										HNSCC(40;0.11)			22	85					0	0	0.014323	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907988	164907988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:164907988G>A	uc003fej.3	-	2	1075	c.631C>T	c.(631-633)CTT>TTT	p.L211F	SLITRK3_uc003fek.2_Missense_Mutation_p.L211F	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	211	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CGGTAAAAAAGAACCTTTAAC	0.398										HNSCC(40;0.11)			16	46					0	0	0.008871	0	0
ZBBX	79740	broad.mit.edu	37	3	167023697	167023697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:167023697C>T	uc003fep.2	-	17	1782	c.1459G>A	c.(1459-1461)GAT>AAT	p.D487N	ZBBX_uc011bpc.1_Missense_Mutation_p.D487N|ZBBX_uc003feq.2_Missense_Mutation_p.D458N	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	487						intracellular	zinc ion binding			ovary(2)	2						GAATACACATCAGGATCCACG	0.289													7	13					0	0	0.003080	0	0
SERPINI2	5276	broad.mit.edu	37	3	167189611	167189611	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:167189611G>A	uc003fer.1	-	1	70	c.12C>T	c.(10-12)ATC>ATT	p.I4I	SERPINI2_uc003fes.1_Silent_p.I14I|SERPINI2_uc003fet.1_Silent_p.I4I	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	4					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TCCACAAGAAGATTGTGTCCA	0.343													55	88					0	0	0.014410	0	0
GOLIM4	27333	broad.mit.edu	37	3	167747027	167747027	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:167747027G>A	uc003ffe.2	-	11	1841	c.1497C>T	c.(1495-1497)ATC>ATT	p.I499I	GOLIM4_uc011bpe.1_Silent_p.I499I|GOLIM4_uc011bpf.1_Silent_p.I471I|GOLIM4_uc011bpg.1_Silent_p.I471I	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	499	Glu-rich.|Gln-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						CCTCTCCTTGGATTCCCTGGT	0.383													16	38					0	0	0.004007	0	0
MIR551B	693136	broad.mit.edu	37	3	168269663	168269663	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:168269663G>A	hsa-mir-551b|MI0003575	+			c.22G>A																				0						CCTGGCCCATGAAATCAAGCG	0.458													23	40					0	0	0.014323	0	0
MECOM	2122	broad.mit.edu	37	3	168833510	168833510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:168833510G>A	uc003ffi.3	-	7	1855	c.1586C>T	c.(1585-1587)TCG>TTG	p.S529L	MECOM_uc010hwk.1_Missense_Mutation_p.S552L|MECOM_uc003ffj.3_Missense_Mutation_p.S594L|MECOM_uc011bpi.1_Missense_Mutation_p.S530L|MECOM_uc003ffn.3_Missense_Mutation_p.S529L|MECOM_uc003ffk.2_Missense_Mutation_p.S529L|MECOM_uc003ffl.2_Missense_Mutation_p.S689L|MECOM_uc011bpj.1_Missense_Mutation_p.S717L|MECOM_uc011bpk.1_Missense_Mutation_p.S519L|MECOM_uc010hwn.2_Missense_Mutation_p.S717L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	529					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CAAAGGTAACGATCTCAAGTC	0.438													14	54					0	0	0.002450	0	0
LRRC34	151827	broad.mit.edu	37	3	169526514	169526514	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:169526514G>A	uc003ffx.2	-	2	135	c.120C>T	c.(118-120)CTC>CTT	p.L40L	LRRC34_uc003ffy.2_Silent_p.L40L|LRRC34_uc011bpn.1_Silent_p.L40L|LRRC34_uc003ffz.2_5'UTR|LRRC34_uc003fga.3_5'UTR	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	40											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			AATGTTTCTGGAGACCAGATT	0.294													7	25					0	0	0.001984	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169539882	169539882	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:169539882A>C	uc003fgb.2	+	1	173	c.173A>C	c.(172-174)AAC>ACC	p.N58T		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	58	LRR 2.										0						TTGGAGAATAACCAGATTGAA	0.448													28	75					0	0	0.007291	0	0
TNIK	23043	broad.mit.edu	37	3	170805181	170805181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:170805181C>T	uc003fhh.2	-	24	3181	c.2836G>A	c.(2836-2838)GGA>AGA	p.G946R	TNIK_uc003fhi.2_Missense_Mutation_p.G891R|TNIK_uc003fhj.2_Missense_Mutation_p.G917R|TNIK_uc003fhk.2_Missense_Mutation_p.G938R|TNIK_uc003fhl.2_Missense_Mutation_p.G862R|TNIK_uc003fhm.2_Missense_Mutation_p.G883R|TNIK_uc003fhn.2_Missense_Mutation_p.G909R|TNIK_uc003fho.2_Missense_Mutation_p.G854R|TNIK_uc003fhg.2_Missense_Mutation_p.G124R	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	946	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CGCCCCAGTCCCTCAGTCGGG	0.592													24	71					0	0	0.014323	0	0
KLHL6	89857	broad.mit.edu	37	3	183210292	183210292	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:183210292G>A	uc003flr.2	-	6	1612	c.1554C>T	c.(1552-1554)ATC>ATT	p.I518I	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	518	Kelch 5.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			CAACGACATAGATGCGGTCCC	0.527													18	40					0	0	0.002780	0	0
EPHB3	2049	broad.mit.edu	37	3	184298401	184298401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:184298401C>T	uc003foz.2	+	12	2821	c.2384C>T	c.(2383-2385)TCC>TTC	p.S795F		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	795	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TACACCAGTTCCCTGGTACAG	0.642													28	23					0	0	0.009535	0	0
BCL6	604	broad.mit.edu	37	3	187442854	187442854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:187442854G>A	uc003frp.3	-	9	2309	c.1852C>T	c.(1852-1854)CGT>TGT	p.R618C	BCL6_uc011bsf.1_Missense_Mutation_p.R562C|BCL6_uc010hza.2_Missense_Mutation_p.R516C|BCL6_uc003frq.1_Missense_Mutation_p.R618C	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	618	C2H2-type 4.				negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		ACATGGGCACGGAGGTGGGCC	0.587			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								14	60					0	0	0.003163	0	0
TPRG1	285386	broad.mit.edu	37	3	188925383	188925383	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:188925383G>A	uc003frv.1	+	7	1437	c.210G>A	c.(208-210)CGG>CGA	p.R70R	TPRG1_uc003frw.1_Silent_p.R70R	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	70											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		TTGCTACACGGGTAAATTTAT	0.303													37	46					0	0	0.006999	0	0
TP63	8626	broad.mit.edu	37	3	189586470	189586470	+	Missense_Mutation	SNP	C	T	T	rs147148566		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:189586470C>T	uc003fry.2	+	8	1183	c.1094C>T	c.(1093-1095)TCG>TTG	p.S365L	TP63_uc003frx.2_Missense_Mutation_p.S365L|TP63_uc003frz.2_Missense_Mutation_p.S365L|TP63_uc010hzc.1_Missense_Mutation_p.S365L|TP63_uc003fsa.2_Missense_Mutation_p.S271L|TP63_uc003fsb.2_Missense_Mutation_p.S271L|TP63_uc003fsc.2_Missense_Mutation_p.S271L|TP63_uc003fsd.2_Missense_Mutation_p.S271L|TP63_uc010hzd.1_Missense_Mutation_p.S186L|TP63_uc003fse.1_Missense_Mutation_p.S246L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	365	Interaction with HIPK2.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.S365L(1)		skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CAGCAAGTTTCGGACAGTACA	0.537									Hay-Wells_syndrome	HNSCC(45;0.13)			19	50					0	0	0.007413	0	0
TP63	8626	broad.mit.edu	37	3	189607196	189607196	+	Silent	SNP	C	T	T	rs147389337	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:189607196C>T	uc003fry.2	+	12	1664	c.1575C>T	c.(1573-1575)CTC>CTT	p.L525L	TP63_uc003frz.2_Silent_p.L525L|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Silent_p.L431L|TP63_uc003fsd.2_Silent_p.L431L|TP63_uc010hzd.1_Silent_p.L346L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	525					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CCCAGGCACTCCCTCCCCCAC	0.577									Hay-Wells_syndrome	HNSCC(45;0.13)			21	43					0	0	0.008871	0	0
LEPREL1	55214	broad.mit.edu	37	3	189705355	189705355	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:189705355C>T	uc011bsk.1	-	5	1447	c.1059G>A	c.(1057-1059)CTG>CTA	p.L353L	LEPREL1_uc003fsg.2_Silent_p.L172L	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	353					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGCTATCATCCAGCAGACTCT	0.378													14	43					0	0	0.003163	0	0
CLDN1	9076	broad.mit.edu	37	3	190026081	190026081	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:190026081C>T	uc003fsh.2	-	4	841	c.621G>A	c.(619-621)GGG>GGA	p.G207G		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	207	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		CGTAGTCTTTCCCGCTGGAAG	0.453													51	90					0	0	0.014410	0	0
UTS2D	257313	broad.mit.edu	37	3	190986220	190986220	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:190986220C>T	uc003fsu.2	-	9	1132	c.345G>A	c.(343-345)TGG>TGA	p.W115*		NM_198152	NP_937795	Q765I0	UTS2B_HUMAN	urotensin 2 domain containing precursor	115						extracellular region	hormone activity				0	all_cancers(143;1.77e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000214)		CACAGTATTTCCAAAAGCAAG	0.269													3	13					0	0	0.009096	0	0
ATP13A4	84239	broad.mit.edu	37	3	193130141	193130141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:193130141C>T	uc003ftd.2	-	27	3142	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1012	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GAGATGCTTTCATTTTGTACT	0.398													48	151					0	0	0.014410	0	0
ATP13A4	84239	broad.mit.edu	37	3	193166037	193166037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:193166037C>T	uc003ftd.2	-	18	2218	c.2110G>A	c.(2110-2112)GAA>AAA	p.E704K	ATP13A4_uc003fte.1_Missense_Mutation_p.E704K|ATP13A4_uc011bsr.1_Missense_Mutation_p.E175K|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	704	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ATGAGCTCTTCCAAGACAGGT	0.403													18	58					0	0	0.007413	0	0
ATP13A4	84239	broad.mit.edu	37	3	193232575	193232575	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:193232575A>T	uc003ftd.2	-	2	254	c.146T>A	c.(145-147)GTG>GAG	p.V49E	ATP13A4_uc003fte.1_Missense_Mutation_p.V49E|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	49	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CCAGTAAAACACCAAGGGGAG	0.502													22	60					0	0	0.014323	0	0
LSG1	55341	broad.mit.edu	37	3	194379758	194379758	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:194379758G>A	uc003fui.2	-	7	1002	c.687C>T	c.(685-687)TTC>TTT	p.F229F		NM_018385	NP_060855	Q9H089	LSG1_HUMAN	large subunit GTPase 1	229					nuclear export|protein transport	Cajal body|endoplasmic reticulum	GTP binding|hydrolase activity				0	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;7.55e-06)		CTTCTTTTTCGAAGTACATGG	0.478													45	125					0	0	0.011902	0	0
C3orf21	152002	broad.mit.edu	37	3	194947472	194947472	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:194947472G>A	uc003fum.3	-	2	726	c.618C>T	c.(616-618)TTC>TTT	p.F206F	C3orf21_uc011bsw.1_Silent_p.F60F	NM_152531	NP_689744	Q8NBI6	CC021_HUMAN	hypothetical protein LOC152002	206						integral to membrane	transferase activity, transferring glycosyl groups				0	all_cancers(143;9.33e-09)|Ovarian(172;0.0634)		Epithelial(36;1.73e-20)|all cancers(36;1.42e-18)|OV - Ovarian serous cystadenocarcinoma(49;1.56e-17)|Lung(62;0.000117)|LUSC - Lung squamous cell carcinoma(58;0.000146)	GBM - Glioblastoma multiforme(46;1.36e-05)		CGACCGAGAGGAAGAAGATGG	0.537													11	63					0	0	0.002450	0	0
MUC4	4585	broad.mit.edu	37	3	195487808	195487808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:195487808C>T	uc011bto.1	-	17	14871	c.14411G>A	c.(14410-14412)GGA>GAA	p.G4804E	MUC4_uc003fuz.2_Missense_Mutation_p.G530E|MUC4_uc003fva.2_Missense_Mutation_p.G412E|MUC4_uc003fvb.2_Missense_Mutation_p.G448E|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.G448E|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.G412E|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.G496E|MUC4_uc011bti.1_Missense_Mutation_p.G496E|MUC4_uc011btj.1_Missense_Mutation_p.G673E|MUC4_uc011btk.1_Missense_Mutation_p.G412E|MUC4_uc011btl.1_Missense_Mutation_p.G441E|MUC4_uc011btm.1_Missense_Mutation_p.G621E|MUC4_uc011btn.1_Missense_Mutation_p.G412E|MUC4_uc003fvo.2_Missense_Mutation_p.G696E|MUC4_uc003fvp.2_Missense_Mutation_p.G645E	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1689					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CGTGTGAAGTCCGATGCTTGC	0.552													12	64					0	0	0.013537	0	0
MUC4	4585	broad.mit.edu	37	3	195493586	195493586	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:195493586G>A	uc011bto.1	-	9	13642	c.13182C>T	c.(13180-13182)TCC>TCT	p.S4394S	MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Silent_p.S2S|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Silent_p.S2S|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Silent_p.S86S|MUC4_uc011bti.1_Silent_p.S86S|MUC4_uc011btj.1_Silent_p.S263S|MUC4_uc011btk.1_Silent_p.S2S|MUC4_uc011btl.1_Silent_p.S31S|MUC4_uc011btm.1_Silent_p.S211S|MUC4_uc011btn.1_Silent_p.S2S|MUC4_uc003fvo.2_Silent_p.S286S|MUC4_uc003fvp.2_Silent_p.S235S|MUC4_uc010hzu.1_Silent_p.S1134S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1279	NIDO.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ACACTGGCTGGGACATCAGTG	0.552													29	37					0	0	0.012213	0	0
TFRC	7037	broad.mit.edu	37	3	195798339	195798339	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:195798339C>T	uc003fvz.3	-	6	898	c.615G>A	c.(613-615)AAG>AAA	p.K205K	TFRC_uc003fwa.3_Silent_p.K205K|TFRC_uc010hzy.2_Silent_p.K124K|TFRC_uc011btr.1_5'UTR	NM_003234	NP_003225	P02786	TFR1_HUMAN	transferrin receptor	205	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|interspecies interaction between organisms|proteolysis|transferrin transport|transmembrane transport	coated pit|endosome|integral to plasma membrane|melanosome	peptidase activity|transferrin receptor activity			ovary(3)	3	all_cancers(143;1.94e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.36e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.17e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00233)		GTCTACCGTTCTTATCAACTA	0.388			T	BCL6	NHL								27	43					0	0	0.006320	0	0
ZNF595	152687	broad.mit.edu	37	4	59432	59432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:59432G>A	uc003fzv.1	+	2	269	c.113G>A	c.(112-114)AGG>AAG	p.R38K	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Missense_Mutation_p.R38K|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	38					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		GAGAACTACAGGAACCTGGTC	0.438													37	481					0	0	0.011902	0	0
PIGG	54872	broad.mit.edu	37	4	520928	520928	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:520928C>T	uc003gak.3	+	10	2306	c.2170C>T	c.(2170-2172)CTG>TTG	p.L724L	PIGG_uc003gaj.3_Silent_p.L716L|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.L591L|PIGG_uc003gal.3_Silent_p.L635L	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	724	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CAAGGCTGCCCTGGCGCTGGG	0.647													16	28					0	0	0.006122	0	0
GAK	2580	broad.mit.edu	37	4	843549	843549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:843549G>A	uc003gbm.3	-	28	4047	c.3848C>T	c.(3847-3849)CCG>CTG	p.P1283L	GAK_uc003gbn.3_Missense_Mutation_p.P1204L|GAK_uc003gbk.3_Missense_Mutation_p.P80L|GAK_uc010ibi.2_Missense_Mutation_p.P508L|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.P1136L	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1283	J.				cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		CTGCTCGTACGGCTGCCCCGC	0.478													6	25					0	0	0.001984	0	0
MAEA	10296	broad.mit.edu	37	4	1305894	1305894	+	Missense_Mutation	SNP	C	T	T	rs112596236		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:1305894C>T	uc003gda.2	+	2	227	c.197C>T	c.(196-198)TCC>TTC	p.S66F	MAEA_uc010ibs.1_Missense_Mutation_p.S66F|MAEA_uc003gdb.2_Missense_Mutation_p.S66F|MAEA_uc011bvb.1_Missense_Mutation_p.S66F|MAEA_uc003gdc.2_Missense_Mutation_p.S66F|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Missense_Mutation_p.S65F|MAEA_uc011bvd.1_Missense_Mutation_p.S18F	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	66	Extracellular and involved in cell to cell contact.				cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			GCCGTGGACTCCGTGGTCAGC	0.647													18	30					0	0	0.008871	0	0
LOC348926	348926	broad.mit.edu	37	4	3948363	3948364	+	RNA	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:3948363_3948364CC>TT	uc011bvu.1	-	5		c.1971_1972GG>AA			LOC348926_uc003ghn.2_Intron	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						CGGCCTCTGCCCGAGTTCCCCG	0.554													5	4					0	0	0.004672	0	0
MAN2B2	23324	broad.mit.edu	37	4	6590783	6590783	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:6590783C>T	uc003gjf.1	+	5	612	c.576C>T	c.(574-576)TTC>TTT	p.F192F	MAN2B2_uc003gje.1_Silent_p.F192F|MAN2B2_uc011bwf.1_Silent_p.F192F	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	192					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GGCTGCAGTTCGTGTGGCGAG	0.617													13	35					0	0	0.002450	0	0
SH3TC1	54436	broad.mit.edu	37	4	8229718	8229718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:8229718C>T	uc003gkv.3	+	12	2398	c.2297C>T	c.(2296-2298)TCC>TTC	p.S766F	SH3TC1_uc003gkw.3_Missense_Mutation_p.S690F|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	766							binding			large_intestine(2)|pancreas(1)	3						GCCCAAACTTCCCACTACCTC	0.692													14	21					0	0	0.004007	0	0
ACOX3	8310	broad.mit.edu	37	4	8394118	8394118	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:8394118G>A	uc010idk.2	-	11	1387	c.1242C>T	c.(1240-1242)ACC>ACT	p.T414T	ACOX3_uc003glc.3_Silent_p.T414T|ACOX3_uc003gld.3_Silent_p.T414T|ACOX3_uc003gle.1_Silent_p.T319T	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	414					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						CTTGCTGGGTGGTCCACGAGG	0.582													104	157					0	0	0.014410	0	0
C4orf23	152992	broad.mit.edu	37	4	8469918	8469918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:8469918C>T	uc003glg.1	+	9	1273	c.1085C>T	c.(1084-1086)CCC>CTC	p.P362L	C4orf23_uc003glf.1_Missense_Mutation_p.P350L|C4orf23_uc003glh.1_Missense_Mutation_p.P199L	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	591					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						GGATTTCATCCCAGAGAAAAG	0.567													14	33					0	0	0.001855	0	0
SLC2A9	56606	broad.mit.edu	37	4	9828093	9828093	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:9828093C>T	uc003gmc.2	-	12	1612	c.1551G>A	c.(1549-1551)AGG>AGA	p.R517R	SLC2A9_uc003gmd.2_Silent_p.R488R	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	517	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						ATGCTTTGTTCCTTTTGGAAA	0.423													50	99					0	0	0.014410	0	0
SLC2A9	56606	broad.mit.edu	37	4	9828100	9828100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:9828100G>A	uc003gmc.2	-	12	1605	c.1544C>T	c.(1543-1545)TCC>TTC	p.S515F	SLC2A9_uc003gmd.2_Missense_Mutation_p.S486F	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	515	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						GTTCCTTTTGGAAAATGCCTG	0.428													50	92					0	0	0.014410	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338967	13338967	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:13338967G>A	uc003gms.2	+	1		c.3931G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						AAGCCTATTTGGACCAGAAAC	0.299													7	29					0	0	0.001984	0	0
BOD1L	259282	broad.mit.edu	37	4	13604873	13604873	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:13604873G>A	uc003gmz.1	-	10	3768	c.3651C>T	c.(3649-3651)AAC>AAT	p.N1217N	BOD1L_uc010idr.1_Silent_p.N554N	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1217							DNA binding			ovary(5)|breast(1)	6						TCTCCCCAGGGTTCATTTTGG	0.398													86	157					0	0	0.014410	0	0
CC2D2A	57545	broad.mit.edu	37	4	15538613	15538613	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:15538613T>C	uc010idv.2	+	16	1923	c.1678T>C	c.(1678-1680)TTA>CTA	p.L560L	CC2D2A_uc003gnx.2_Silent_p.L511L|CC2D2A_uc003gnz.1_RNA|CC2D2A_uc003goa.1_5'Flank|CC2D2A_uc003gnv.2_Silent_p.L560L	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	560	Potential.				cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						AAGTGAACTGTTAGAAGAGCA	0.408													16	33					0	0	0.003163	0	0
FBXL5	26234	broad.mit.edu	37	4	15607372	15607372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:15607372G>A	uc003goc.1	-	11	2153	c.2050C>T	c.(2050-2052)CGA>TGA	p.R684*	FBXL5_uc010idw.1_Nonsense_Mutation_p.R597*|FBXL5_uc003gob.1_Nonsense_Mutation_p.R558*|FBXL5_uc010idx.1_Nonsense_Mutation_p.R683*|FBXL5_uc003god.1_Nonsense_Mutation_p.R667*	NM_012161	NP_036293	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5 isoform	684					iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity				0						CAGCAGGCTCGAAAACCACAC	0.443													15	38					0	0	0.004990	0	0
FGFBP1	9982	broad.mit.edu	37	4	15938050	15938050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:15938050C>T	uc003gom.2	-	2	324	c.206G>A	c.(205-207)AGA>AAA	p.R69K		NM_005130	NP_005121	Q14512	FGFP1_HUMAN	fibroblast growth factor binding protein 1	69					cell-cell signaling|negative regulation of cell proliferation|signal transduction	extracellular space|plasma membrane	heparin binding				0						AGCAGCCCATCTGCAGTTGGC	0.502													45	78					0	0	0.011902	0	0
SLIT2	9353	broad.mit.edu	37	4	20611720	20611720	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:20611720G>A	uc003gpr.1	+	34	3981	c.3777G>A	c.(3775-3777)GGG>GGA	p.G1259G	SLIT2_uc003gps.1_Silent_p.G1251G	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1259	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGGATGGTGGGAACCCCAAAA	0.438													24	50					0	0	0.002780	0	0
LGI2	55203	broad.mit.edu	37	4	25019647	25019647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:25019647C>T	uc003grf.2	-	6	718	c.619G>A	c.(619-621)GAC>AAC	p.D207N		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	207	LRRCT.					extracellular region					0		Breast(46;0.173)				CTGGTCACGTCATTTAGCTTC	0.408													52	85					0	0	0.014410	0	0
SEL1L3	23231	broad.mit.edu	37	4	25803907	25803907	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:25803907G>A	uc003gru.3	-	11	2106	c.1954C>T	c.(1954-1956)CAG>TAG	p.Q652*	SEL1L3_uc003grv.2_Nonsense_Mutation_p.Q59*	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	652						integral to membrane	binding				0						TCTCATACCTGATCTCCTTGC	0.498													16	31					0	0	0.004007	0	0
CCKAR	886	broad.mit.edu	37	4	26483297	26483297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:26483297G>A	uc003gse.1	-	5	1403	c.1250C>T	c.(1249-1251)TCG>TTG	p.S417L		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	417	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	ATGGCTGTACGAGAACCTGGA	0.532													55	101					0	0	0.014410	0	0
ARAP2	116984	broad.mit.edu	37	4	36162209	36162209	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:36162209G>A	uc003gsq.1	-	13	2652	c.2314C>T	c.(2314-2316)CAA>TAA	p.Q772*	ARAP2_uc003gsr.1_Nonsense_Mutation_p.Q772*	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	772	Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCATCCTTTTGAAGATTACCA	0.294													4	26					0	0	0.001168	0	0
TLR10	81793	broad.mit.edu	37	4	38775644	38775644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:38775644G>A	uc003gti.2	-	2	1947	c.1568C>T	c.(1567-1569)CCA>CTA	p.P523L	TLR10_uc003gtj.2_Missense_Mutation_p.P523L|TLR10_uc003gtk.2_Missense_Mutation_p.P523L	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	523	Extracellular (Potential).|LRRCT.				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ACACCGGAATGGATTTCTTCC	0.393													22	59					0	0	0.002780	0	0
LOC401127	401127	broad.mit.edu	37	4	39482109	39482109	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:39482109C>T	uc011byn.1	+	1		c.235C>T			LOC401127_uc011byo.1_RNA	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						AGAGCCATGGCGATGGAGGAG	0.667													5	9					0	0	0.001168	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895461	42895461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:42895461G>A	uc003gwt.2	+	1	178	c.178G>A	c.(178-180)GGA>AGA	p.G60R		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	60					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						TGATTCCGATGGACAGCAGAA	0.498													69	150					0	0	0.014410	0	0
GABRG1	2565	broad.mit.edu	37	4	46067417	46067417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:46067417C>T	uc003gxb.2	-	4	658	c.506G>A	c.(505-507)CGA>CAA	p.R169Q		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	169	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ATTCCAAATTCGAAGCAGACG	0.323													27	47					0	0	0.008361	0	0
GABRB1	2560	broad.mit.edu	37	4	47427844	47427844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:47427844G>A	uc003gxh.2	+	9	1608	c.1234G>A	c.(1234-1236)GAG>AAG	p.E412K	GABRB1_uc011bze.1_Missense_Mutation_p.E342K	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	412	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GAGCAGCCGCGAGGCCTACGG	0.662													11	43					0	0	0.008291	0	0
TEC	7006	broad.mit.edu	37	4	48147206	48147206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:48147206G>A	uc003gxz.2	-	14	1451	c.1360C>T	c.(1360-1362)CTC>TTC	p.L454F		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	454	Protein kinase.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						CTCTGTCGGAGGAAATTCAGA	0.473													45	85					0	0	0.008740	0	0
SLAIN2	57606	broad.mit.edu	37	4	48381736	48381736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:48381736C>T	uc003gya.3	+	4	877	c.733C>T	c.(733-735)CCA>TCA	p.P245S	SLAIN2_uc003gyb.1_5'Flank	NM_020846	NP_065897	Q9P270	SLAI2_HUMAN	SLAIN motif family, member 2	245						centrosome					0						CAGAAATCCTCCACTCAGTCC	0.323													26	56					0	0	0.003954	0	0
LNX1	84708	broad.mit.edu	37	4	54364864	54364864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:54364864G>A	uc003hag.3	-	5	1178	c.922C>T	c.(922-924)CGT>TGT	p.R308C	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.R212C|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	308	PDZ 1.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			ACCCCATCACGATAAATGTGT	0.507													20	31					0	0	0.012319	0	0
PDGFRA	5156	broad.mit.edu	37	4	55129833	55129833	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:55129833G>A	uc003han.3	+	4	699	c.368_splice	c.e4-1	p.D123_splice	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Splice_Site_p.D123_splice|PDGFRA_uc010igq.1_Splice_Site_p.D17_splice|PDGFRA_uc003ham.2_Splice_Site	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha						cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TTAAACCACAGACCCAGATGT	0.378			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			45	56					0	0	0.014410	0	0
KDR	3791	broad.mit.edu	37	4	55968569	55968569	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:55968569G>A	uc003has.2	-	14	2396	c.2094C>T	c.(2092-2094)ATC>ATT	p.I698I	KDR_uc003hat.1_Silent_p.I698I	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	698	Ig-like C2-type 7.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TAAACCACATGATCTGTGGAG	0.458			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			37	70					0	0	0.006230	0	0
KDR	3791	broad.mit.edu	37	4	55981484	55981484	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:55981484G>A	uc003has.2	-	4	755	c.453C>T	c.(451-453)CTC>CTT	p.L151L	KDR_uc003hat.1_Silent_p.L151L|KDR_uc011bzx.1_Silent_p.L151L	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	151	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	AAATGGACCCGAGACATGGAA	0.368			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			13	28					0	0	0.002450	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182498	57182498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:57182498C>T	uc003hbk.2	+	8	3221	c.2830C>T	c.(2830-2832)CCG>TCG	p.P944S	KIAA1211_uc010iha.2_Missense_Mutation_p.P937S|KIAA1211_uc011bzz.1_Missense_Mutation_p.P854S|KIAA1211_uc003hbm.1_Missense_Mutation_p.P830S	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	944	Pro-rich.									ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CAGCCAGACCCCGGCTCCGGA	0.652													10	35					0	0	0.008291	0	0
POLR2B	5431	broad.mit.edu	37	4	57873037	57873037	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:57873037C>T	uc003hcl.1	+	10	1316	c.1273C>T	c.(1273-1275)CGA>TGA	p.R425*	POLR2B_uc011cae.1_Nonsense_Mutation_p.R418*|POLR2B_uc011caf.1_Nonsense_Mutation_p.R350*|POLR2B_uc003hcm.1_5'Flank	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	425					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					ATTTATTGATCGAGGAAAGGA	0.343													26	71					0	0	0.005443	0	0
TECRL	253017	broad.mit.edu	37	4	65145804	65145804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:65145804G>A	uc003hcv.2	-	12	1187	c.1078C>T	c.(1078-1080)CCA>TCA	p.P360S	TECRL_uc010ihi.2_RNA	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	360					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						AATATGAATGGAATCATTGCT	0.274													13	21					0	0	0.001855	0	0
UGT2B15	7366	broad.mit.edu	37	4	69536055	69536055	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:69536055G>A	uc011cal.1	-	1	320	c.282C>T	c.(280-282)CTC>CTT	p.L94L		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	94					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCCATCTATCGAGAATTTTCA	0.289													29	129					0	0	0.007291	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146558	70146558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:70146558G>A	uc003hej.2	+	1	342	c.340G>A	c.(340-342)GAA>AAA	p.E114K	UGT2B28_uc010ihr.2_Missense_Mutation_p.E114K	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	114					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	ACAAGAACAAGAAATCCTGTG	0.289													62	88					0	0	0.014410	0	0
UGT2B4	7363	broad.mit.edu	37	4	70359494	70359494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:70359494C>T	uc003hek.3	-	2	834	c.787G>A	c.(787-789)GAT>AAT	p.D263N	UGT2B4_uc011cap.1_Missense_Mutation_p.D127N|UGT2B4_uc003hel.3_Missense_Mutation_p.D263N	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	263					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AATTGAAAATCCCAGTAGTTT	0.418													30	57					0	0	0.006320	0	0
UGT2A1	10941	broad.mit.edu	37	4	70512791	70512791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:70512791G>A	uc003hem.3	-	1	635	c.572C>T	c.(571-573)TCC>TTC	p.S191F	UGT2A1_uc011caq.1_Missense_Mutation_p.S191F|UGT2A1_uc010ihu.2_Missense_Mutation_p.S191F|UGT2A1_uc010iht.2_Missense_Mutation_p.S191F	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	191	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						AGGAACATAGGAAGGAGGGTA	0.408													15	30					0	0	0.014323	0	0
SULT1E1	6783	broad.mit.edu	37	4	70709918	70709918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:70709918C>T	uc003heo.2	-	7	846	c.733G>A	c.(733-735)GAA>AAA	p.E245K		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	245					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TTCATAATTTCGTCTGGCAGT	0.428													46	106					0	0	0.014410	0	0
SULT1E1	6783	broad.mit.edu	37	4	70723286	70723286	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:70723286T>A	uc003heo.2	-	2	190	c.77A>T	c.(76-78)TAT>TTT	p.Y26F	SULT1E1_uc010ihv.1_Missense_Mutation_p.Y26F	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	26					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						ATTATCCCAATATTTGACAAA	0.353													39	42					0	0	0.006230	0	0
HTN3	3347	broad.mit.edu	37	4	70897700	70897700	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:70897700C>G	uc003hew.2	+	3	173	c.56C>G	c.(55-57)GCT>GGT	p.A19G		NM_000200	NP_000191	P15516	HIS3_HUMAN	histatin 3	19					biomineral tissue development|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	metal ion binding|protein binding			ovary(1)|skin(1)	2						TCCAAGGGAGCTGATTCACAT	0.234													14	13					0	0	0.006122	0	0
C4orf35	85438	broad.mit.edu	37	4	71201163	71201163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:71201163C>T	uc003hff.2	+	1	493	c.407C>T	c.(406-408)TCC>TTC	p.S136F		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	136						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				ATAGATTTTTCCACTGACATA	0.383													21	29					0	0	0.012319	0	0
C4orf35	85438	broad.mit.edu	37	4	71201181	71201181	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:71201181A>C	uc003hff.2	+	1	511	c.425A>C	c.(424-426)GAA>GCA	p.E142A		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	142						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				ATAGCAAAAGAAGATATCCTC	0.403													22	33					0	0	0.004656	0	0
SMR3A	26952	broad.mit.edu	37	4	71232465	71232465	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:71232465C>T	uc003hfg.1	+	3	240	c.159C>T	c.(157-159)CCC>CCT	p.P53P	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	53	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				TTCCACCACCCCATCCTCCAC	0.572													33	54					0	0	0.003271	0	0
MUC7	4589	broad.mit.edu	37	4	71346720	71346720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:71346720C>T	uc011cat.1	+	4	547	c.259C>T	c.(259-261)CCT>TCT	p.P87S	MUC7_uc011cau.1_Missense_Mutation_p.P87S|MUC7_uc003hfj.2_Missense_Mutation_p.P87S|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	87						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ATTCCCAAATCCTCACCAGCC	0.458													35	48					0	0	0.012213	0	0
AMTN	401138	broad.mit.edu	37	4	71396865	71396865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:71396865G>A	uc003hfk.1	+	8	556	c.467G>A	c.(466-468)GGA>GAA	p.G156E	AMTN_uc010ihy.1_Missense_Mutation_p.G155E	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	156					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			CTTCCAGCAGGAGGAGCAGGT	0.607													17	26					0	0	0.004990	0	0
SLC4A4	8671	broad.mit.edu	37	4	72400022	72400022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:72400022C>T	uc003hfy.2	+	18	2476	c.2359C>T	c.(2359-2361)CCG>TCG	p.P787S	SLC4A4_uc010iic.2_Missense_Mutation_p.P787S|SLC4A4_uc010iib.2_Missense_Mutation_p.P787S|SLC4A4_uc003hfz.2_Missense_Mutation_p.P787S|SLC4A4_uc003hgc.3_Missense_Mutation_p.P743S|SLC4A4_uc010iid.2_5'UTR	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	787	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TGCTGCTATCCCGGCTTTGTT	0.433													6	53					0	0	0.001168	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013082	73013082	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:73013082C>T	uc003hgg.2	+	4	1220	c.1122C>T	c.(1120-1122)ATC>ATT	p.I374I	NPFFR2_uc010iig.1_Silent_p.I156I|NPFFR2_uc003hgi.2_Silent_p.I275I|NPFFR2_uc003hgh.2_Silent_p.I272I|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	374	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			AGCAGAAGATCATTAAGATGC	0.498													17	47					0	0	0.004007	0	0
AFM	173	broad.mit.edu	37	4	74357600	74357600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:74357600G>A	uc003hhb.2	+	8	886	c.855G>A	c.(853-855)ATG>ATA	p.M285I		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	285	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GCAAGGTTATGAACCATATTT	0.373													27	66					0	0	0.010818	0	0
PF4	5196	broad.mit.edu	37	4	74847172	74847172	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:74847172C>T	uc003hhi.2	-	2	225	c.180G>A	c.(178-180)GTG>GTA	p.V60V		NM_002619	NP_002610	P02776	PLF4_HUMAN	platelet factor 4 (chemokine (C-X-C motif)	60					cytokine-mediated signaling pathway|immune response|leukocyte chemotaxis|negative regulation of angiogenesis|negative regulation of apoptosis|negative regulation of cytolysis|negative regulation of megakaryocyte differentiation|negative regulation of MHC class II biosynthetic process|platelet activation|platelet degranulation|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of tumor necrosis factor production	extracellular space|platelet alpha granule lumen	chemokine activity|heparin binding				0	Breast(15;0.00136)		all cancers(17;0.0034)|Lung(101;0.196)		Drotrecogin alfa(DB00055)	CGGCCTTGATCACCTCCAGGC	0.622													8	40					0	0	0.006214	0	0
PF4	5196	broad.mit.edu	37	4	74847220	74847220	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:74847220C>T	uc003hhi.2	-	2	177	c.132G>A	c.(130-132)GTG>GTA	p.V44V		NM_002619	NP_002610	P02776	PLF4_HUMAN	platelet factor 4 (chemokine (C-X-C motif)	44					cytokine-mediated signaling pathway|immune response|leukocyte chemotaxis|negative regulation of angiogenesis|negative regulation of apoptosis|negative regulation of cytolysis|negative regulation of megakaryocyte differentiation|negative regulation of MHC class II biosynthetic process|platelet activation|platelet degranulation|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of tumor necrosis factor production	extracellular space|platelet alpha granule lumen	chemokine activity|heparin binding				0	Breast(15;0.00136)		all cancers(17;0.0034)|Lung(101;0.196)		Drotrecogin alfa(DB00055)	AGGTGGTCTTCACACACAGGC	0.602													10	19					0	0	0.013537	0	0
CXCL5	6374	broad.mit.edu	37	4	74863790	74863790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:74863790C>T	uc003hhk.2	-	3	383	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NM_002994	NP_002985	P42830	CXCL5_HUMAN	chemokine (C-X-C motif) ligand 5 precursor	89					cell-cell signaling|chemotaxis|immune response|positive regulation of cell proliferation|signal transduction	extracellular space	chemokine activity				0	Breast(15;0.00136)		all cancers(17;0.00273)|Lung(101;0.196)			AGACAAATTTCCTTCCCGTTC	0.423													44	79					0	0	0.014410	0	0
C4orf26	152816	broad.mit.edu	37	4	76489606	76489606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:76489606C>T	uc003hip.1	+	2	385	c.350C>T	c.(349-351)CCC>CTC	p.P117L	C4orf26_uc011cbn.1_RNA|C4orf26_uc011cbo.1_Missense_Mutation_p.P132S	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	117						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AGGTATTTCCCCAGAAGAAGA	0.433													83	152					0	0	0.014410	0	0
SHROOM3	57619	broad.mit.edu	37	4	77676179	77676179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:77676179C>T	uc011cbx.1	+	7	5496	c.4543C>T	c.(4543-4545)CCC>TCC	p.P1515S	SHROOM3_uc003hkg.2_Missense_Mutation_p.P1293S	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1515					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GGATCCGCACCCCAAGGCCAC	0.587													26	41					0	0	0.008361	0	0
SEPT11	55752	broad.mit.edu	37	4	77949800	77949800	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:77949800A>G	uc003hkj.2	+	8	1134	c.972A>G	c.(970-972)GAA>GAG	p.E324E	SEPT11_uc010ijh.1_Silent_p.E316E|SEPT11_uc011cca.1_Silent_p.E334E	NM_018243	NP_060713	Q9NVA2	SEP11_HUMAN	septin 11	324	Potential.				cell cycle|cell division|protein heterooligomerization	axon|cell junction|dendritic spine|septin complex|stress fiber|synapse	GTP binding|protein binding				0						AGACATATGAAGCAAAAAGGA	0.348													38	60					0	0	0.005524	0	0
CNOT6L	246175	broad.mit.edu	37	4	78650093	78650094	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:78650093_78650094GG>AA	uc011ccd.1	-	10	1297_1298	c.1166_1167CC>TT	c.(1165-1167)GCC>GTT	p.A389V	CNOT6L_uc003hks.2_Missense_Mutation_p.A389V|CNOT6L_uc003hkt.1_Missense_Mutation_p.A232V	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	389					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						GCCTACTAGAGGCTTTCTCCAG	0.45													59	105					0	0	0.004672	0	0
FRAS1	80144	broad.mit.edu	37	4	79205703	79205703	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:79205703G>A	uc003hlb.2	+	13	1839	c.1399_splice	c.e13+1	p.A467_splice	FRAS1_uc003hkw.2_Splice_Site_p.A467_splice|FRAS1_uc003hky.1_Splice_Site_p.A171_splice|FRAS1_uc003hkz.2_Splice_Site_p.A171_splice|FRAS1_uc003hla.1_5'Flank	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1						cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTCTGTTTAGGTATGGCTCCA	0.498													38	72					0	0	0.004289	0	0
FRAS1	80144	broad.mit.edu	37	4	79308708	79308708	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:79308708C>T	uc003hlb.2	+	29	4268	c.3828C>T	c.(3826-3828)ATC>ATT	p.I1276I	FRAS1_uc003hkw.2_Silent_p.I1276I	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1275	CSPG 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CAACCCCTATCTATCAATTCC	0.488													18	24					0	0	0.007413	0	0
FRAS1	80144	broad.mit.edu	37	4	79366681	79366681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:79366681C>T	uc003hlb.2	+	42	6111	c.5671C>T	c.(5671-5673)CGT>TGT	p.R1891C	FRAS1_uc003hkw.2_Missense_Mutation_p.R1891C|FRAS1_uc010ijj.1_Missense_Mutation_p.R311C	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1890	CSPG 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGCAGGTGATCGTTTTGGCCC	0.393													18	43					0	0	0.004990	0	0
FRAS1	80144	broad.mit.edu	37	4	79369340	79369340	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:79369340C>T	uc003hlb.2	+	44	6584	c.6144C>T	c.(6142-6144)GTC>GTT	p.V2048V		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2047	CSPG 8.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTGGCATGGTCGTGGATGAGT	0.542													21	39					0	0	0.004656	0	0
GK2	2712	broad.mit.edu	37	4	80328028	80328028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:80328028G>A	uc003hlu.2	-	1	1345	c.1327C>T	c.(1327-1329)CAT>TAT	p.H443Y		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	443					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						ACTGGAATATGAAGAATATCT	0.468													41	55					0	0	0.007835	0	0
GK2	2712	broad.mit.edu	37	4	80328648	80328648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:80328648G>A	uc003hlu.2	-	1	725	c.707C>T	c.(706-708)TCT>TTT	p.S236F		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	236					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GATCTCAGAAGAACTGAAGAC	0.413													30	62					0	0	0.009535	0	0
PRKG2	5593	broad.mit.edu	37	4	82125919	82125919	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:82125919G>A	uc003hmh.2	-	1	297	c.283C>T	c.(283-285)CAG>TAG	p.Q95*	PRKG2_uc011cch.1_Nonsense_Mutation_p.Q95*	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	95					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GGAGAGGCCTGAAGCGGGCTT	0.562													51	108					0	0	0.014410	0	0
HELQ	113510	broad.mit.edu	37	4	84339276	84339276	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:84339276G>A	uc003hom.2	-	16	3212	c.3033C>T	c.(3031-3033)ATC>ATT	p.I1011I	HELQ_uc010ikb.2_Silent_p.I944I|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	1011							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						CCATGAGAGGGATTAATTCTG	0.378								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					75	159					0	0	0.014410	0	0
NKX6-1	4825	broad.mit.edu	37	4	85416951	85416951	+	Silent	SNP	C	T	T	rs111718959		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:85416951C>T	uc003hpa.1	-	2	723	c.717G>A	c.(715-717)ACG>ACA	p.T239T		NM_006168	NP_006159	P78426	NKX61_HUMAN	NK6 transcription factor related, locus 1	239	Homeobox.|Repressor domain (By similarity).				detection of glucose|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|type B pancreatic cell maturation	nucleus					0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.0013)		AAGTGGGTCTCGTGTGTTTTC	0.488													19	79					0	0	0.002780	0	0
NKX6-1	4825	broad.mit.edu	37	4	85419084	85419084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:85419084C>T	uc003hpa.1	-	1	304	c.298G>A	c.(298-300)GAT>AAT	p.D100N		NM_006168	NP_006159	P78426	NKX61_HUMAN	NK6 transcription factor related, locus 1	100				D -> N (in Ref. 1; AAD11962).	detection of glucose|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|type B pancreatic cell maturation	nucleus					0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.0013)		CTCAGGATATCGTTGATGCCG	0.562													5	6					0	0	0.000602	0	0
CDS1	1040	broad.mit.edu	37	4	85562059	85562059	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:85562059C>T	uc011ccv.1	+	10	1446	c.948C>T	c.(946-948)TCC>TCT	p.S316S	CDS1_uc010ike.1_Silent_p.S120S	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	316					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		ATGTAAACTCCTTCGTGACAG	0.383													51	91					0	0	0.014410	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86863241	86863241	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:86863241G>A	uc003hpk.2	+	5	863	c.414G>A	c.(412-414)GAG>GAA	p.E138E	ARHGAP24_uc003hpj.2_Silent_p.E138E|ARHGAP24_uc003hpl.2_Silent_p.E43E|ARHGAP24_uc010ikf.2_Silent_p.E53E|ARHGAP24_uc003hpm.2_Silent_p.E45E	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	138	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		AGAAACTGGAGGATACTGTTC	0.413													15	30					0	0	0.004990	0	0
MAPK10	5602	broad.mit.edu	37	4	87023061	87023061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:87023061C>T	uc003hpq.2	-	6	617	c.550G>A	c.(550-552)GGA>AGA	p.G184R	MAPK10_uc010ikg.2_Missense_Mutation_p.G146R|MAPK10_uc003hpr.2_Missense_Mutation_p.G146R|MAPK10_uc003hps.2_Missense_Mutation_p.G184R|MAPK10_uc003hpt.2_Missense_Mutation_p.G184R|MAPK10_uc003hpu.2_Missense_Mutation_p.G184R|MAPK10_uc003hpv.2_Missense_Mutation_p.G39R|MAPK10_uc010ikh.1_RNA|MAPK10_uc003hpn.2_5'Flank|MAPK10_uc003hpo.2_Missense_Mutation_p.G39R|MAPK10_uc011ccw.1_Missense_Mutation_p.G70R|MAPK10_uc003hpp.2_Missense_Mutation_p.G39R	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	184	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		TGAATAATTCCAGCAGAATGG	0.398													34	83					0	0	0.010818	0	0
PKD2	5311	broad.mit.edu	37	4	88959628	88959628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:88959628C>T	uc003hre.2	+	4	1135	c.1069C>T	c.(1069-1071)CCC>TCC	p.P357S		NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	357	Extracellular (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		AGATAGGGCTCCCTTTGGGCC	0.458													33	69					0	0	0.004289	0	0
MMRN1	22915	broad.mit.edu	37	4	90816609	90816609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:90816609G>A	uc003hst.2	+	1	558	c.487G>A	c.(487-489)GGA>AGA	p.G163R	MMRN1_uc010iku.2_Missense_Mutation_p.G129R	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	163					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		tggaggcactggaggcattgg	0.363													22	46					0	0	0.014323	0	0
MMRN1	22915	broad.mit.edu	37	4	90857605	90857605	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:90857605A>C	uc003hst.2	+	6	2845	c.2774A>C	c.(2773-2775)CAC>CCC	p.H925P	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.H667P	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	925					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		AAAACTCTCCACGAAGTTTTA	0.373													15	31					0	0	0.003163	0	0
GRID2	2895	broad.mit.edu	37	4	93511390	93511390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:93511390C>T	uc011cdt.1	+	2	455	c.197C>T	c.(196-198)TCA>TTA	p.S66L	GRID2_uc010ikx.2_Missense_Mutation_p.S66L|GRID2_uc011cdu.1_Missense_Mutation_p.S66L	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	66	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	ATCACATTTTCAGTGACGTTT	0.393													19	91					0	0	0.007413	0	0
GRID2	2895	broad.mit.edu	37	4	94344033	94344033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:94344033G>A	uc011cdt.1	+	10	1717	c.1459G>A	c.(1459-1461)GAA>AAA	p.E487K	GRID2_uc011cdu.1_Missense_Mutation_p.E392K	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	487	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TTTTAACTACGAAATTTACGT	0.418													26	35					0	0	0.003330	0	0
ADH1B	125	broad.mit.edu	37	4	100231942	100231942	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:100231942G>A	uc003hus.3	-	8	1167	c.1083C>T	c.(1081-1083)GAC>GAT	p.D361D	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.D321D|ADH1B_uc011ceh.1_Silent_p.D206D|ADH1B_uc011cei.1_Silent_p.D321D	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	361					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	AGTGAAGCAGGTCAAATCCTT	0.348													21	64					0	0	0.010504	0	0
ADH1B	125	broad.mit.edu	37	4	100232053	100232053	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:100232053C>T	uc003hus.3	-	8	1056	c.972G>A	c.(970-972)AAG>AAA	p.K324K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.K284K|ADH1B_uc011ceh.1_Silent_p.K169K|ADH1B_uc011cei.1_Silent_p.K284K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	324					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CTTCTTTACTCTTAAAGCCTG	0.333													49	68					0	0	0.014410	0	0
ADH1B	125	broad.mit.edu	37	4	100234992	100234992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:100234992G>A	uc003hus.3	-	6	898	c.814C>T	c.(814-816)CGG>TGG	p.R272W	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.R232W|ADH1B_uc011ceh.1_Missense_Mutation_p.R117W|ADH1B_uc011cei.1_Missense_Mutation_p.R232W	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	272					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GTGTCAAGCCGACCGATGACT	0.423													105	155					0	0	0.014410	0	0
DAPP1	27071	broad.mit.edu	37	4	100789302	100789302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:100789302G>A	uc003hvf.3	+	9	893	c.803G>A	c.(802-804)GGG>GAG	p.G268E	DAPP1_uc010ilh.2_3'UTR	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	268					signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		CTCAACCAAGGGGAAGGCACG	0.428													5	78					0	0	0.001168	0	0
EMCN	51705	broad.mit.edu	37	4	101401114	101401114	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:101401114C>T	uc003hvr.2	-	2	326	c.147G>A	c.(145-147)CAG>CAA	p.Q49Q	EMCN_uc011cel.1_Silent_p.Q49Q|EMCN_uc011cem.1_Silent_p.Q49Q	NM_016242	NP_057326	Q9ULC0	MUCEN_HUMAN	endomucin isoform 1	49	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(123;2.49e-08)		CAACATTTTTCTGTAATGATT	0.299													14	27					0	0	0.004990	0	0
BANK1	55024	broad.mit.edu	37	4	102946432	102946432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:102946432G>A	uc003hvy.3	+	9	1634	c.1360G>A	c.(1360-1362)GAA>AAA	p.E454K	BANK1_uc003hvx.3_Missense_Mutation_p.E439K|BANK1_uc010ill.2_Missense_Mutation_p.E321K|BANK1_uc003hvz.3_Missense_Mutation_p.E424K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	454					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		TGAGGCAAATGAAATGGAAGG	0.463													44	67					0	0	0.013114	0	0
NHEDC2	133308	broad.mit.edu	37	4	103987640	103987640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:103987640C>T	uc003hwx.3	-	3	987	c.115G>A	c.(115-117)GGT>AGT	p.G39S	NHEDC2_uc003hwy.2_Missense_Mutation_p.G39S|NHEDC2_uc011cew.1_Missense_Mutation_p.G39S|NHEDC2_uc011cex.1_Missense_Mutation_p.G39S|NHEDC2_uc011cey.1_Missense_Mutation_p.G39S	NM_178833	NP_849155	Q86UD5	NHDC2_HUMAN	Na+/H+ exchanger domain containing 2	39					sodium ion transport	integral to membrane|mitochondrial membrane	solute:hydrogen antiporter activity				0				OV - Ovarian serous cystadenocarcinoma(123;2.3e-08)		GCATCTATACCTTTGAGCTTC	0.323													28	68					0	0	0.008361	0	0
CENPE	1062	broad.mit.edu	37	4	104065532	104065532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:104065532C>T	uc003hxb.1	-	33	5191	c.5101G>A	c.(5101-5103)GAG>AAG	p.E1701K	CENPE_uc003hxc.1_Missense_Mutation_p.E1676K	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1701	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGGTCTCTCTCTACTTTGAGA	0.383													23	74					0	0	0.002780	0	0
TACR3	6870	broad.mit.edu	37	4	104577409	104577409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:104577409C>T	uc003hxe.1	-	3	973	c.830G>A	c.(829-831)GGA>GAA	p.G277E		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	277	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TGGGATTTCTCCTCCCCAGAG	0.398													44	87					0	0	0.013114	0	0
TACR3	6870	broad.mit.edu	37	4	104640604	104640604	+	Nonsense_Mutation	SNP	G	A	A	rs149706734		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:104640604G>A	uc003hxe.1	-	1	372	c.229C>T	c.(229-231)CAG>TAG	p.Q77*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	77	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TGCACGAACTGGTTGGTGAGG	0.637													27	56					0	0	0.006320	0	0
DKK2	27123	broad.mit.edu	37	4	107846989	107846989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:107846989C>T	uc003hyi.2	-	2	1045	c.340G>A	c.(340-342)GGC>AGC	p.G114S	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.G114S	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	114	DKK-type Cys-1.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CAGCACATGCCATCTCGGTGG	0.493													70	115					0	0	0.014410	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109670491	109670491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:109670491C>T	uc003hzc.2	-	8	1011	c.830G>A	c.(829-831)GGA>GAA	p.G277E	AGXT2L1_uc010imc.2_Missense_Mutation_p.G271E|AGXT2L1_uc011cfm.1_Missense_Mutation_p.G237E|AGXT2L1_uc011cfn.1_Missense_Mutation_p.G204E|AGXT2L1_uc011cfo.1_Missense_Mutation_p.G219E	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	277					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		CATCGGTTTTCCCATTGTGAC	0.468													40	85					0	0	0.007835	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109681429	109681429	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:109681429G>A	uc003hzc.2	-	2	271	c.90C>T	c.(88-90)CCC>CCT	p.P30P	AGXT2L1_uc010imc.2_Silent_p.P30P|AGXT2L1_uc011cfm.1_5'UTR|AGXT2L1_uc011cfn.1_Intron|AGXT2L1_uc011cfo.1_Intron	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	30					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		CTATTTTGATGGGATCCGATG	0.428													52	64					0	0	0.014410	0	0
CFI	3426	broad.mit.edu	37	4	110662218	110662218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:110662218G>A	uc003hzr.3	-	13	1791	c.1583C>T	c.(1582-1584)CCC>CTC	p.P528L	CFI_uc003hzq.2_Missense_Mutation_p.P325L|CFI_uc011cft.1_Missense_Mutation_p.P536L|CFI_uc003hzs.3_Missense_Mutation_p.P521L	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	528	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		ACAGACTAAGGGGCCTCCAGA	0.438													106	162					0	0	0.014410	0	0
ENPEP	2028	broad.mit.edu	37	4	111398065	111398065	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:111398065G>A	uc003iab.3	+	1	837	c.495G>A	c.(493-495)AAG>AAA	p.K165K		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	165	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AGTACAAAAAGCAGGAGTACG	0.622													71	124					0	0	0.014410	0	0
ANK2	287	broad.mit.edu	37	4	114179525	114179525	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:114179525C>T	uc003ibe.3	+	13	1444	c.1344C>T	c.(1342-1344)CTC>CTT	p.L448L	ANK2_uc003ibd.3_Silent_p.L427L|ANK2_uc003ibf.3_Silent_p.L448L|ANK2_uc003ibc.2_Silent_p.L424L|ANK2_uc011cgb.1_Silent_p.L463L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	448	ANK 13.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ACATTGTCCTCCTTCTGCTGC	0.517													36	146					0	0	0.006999	0	0
NDST4	64579	broad.mit.edu	37	4	115997281	115997281	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:115997281G>A	uc003ibu.2	-	2	1591	c.912C>T	c.(910-912)ATC>ATT	p.I304I	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	304	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TGTCCACAAGGATGTACCTGT	0.403													17	71					0	0	0.004990	0	0
SEC24D	9871	broad.mit.edu	37	4	119659531	119659531	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:119659531A>G	uc003ici.3	-	19	2653	c.2381T>C	c.(2380-2382)TTT>TCT	p.F794S	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.F795S|SEC24D_uc003icl.2_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	794					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						AACTGCTTTAAAAGCTACATC	0.383													23	29					0	0	0.004656	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951596	119951596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:119951596G>A	uc003icm.3	+	4	1862	c.1666G>A	c.(1666-1668)GAG>AAG	p.E556K	SYNPO2_uc010ina.2_Missense_Mutation_p.E556K|SYNPO2_uc010inb.2_Missense_Mutation_p.E556K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.E484K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	556						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AAGCTACATCGAGGTGAGTCA	0.517													20	54					0	0	0.012319	0	0
TRPC3	7222	broad.mit.edu	37	4	122835986	122835987	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:122835986_122835987GG>AA	uc003ieg.2	-	4	1363_1364	c.1289_1290CC>TT	c.(1288-1290)GCC>GTT	p.A430V	TRPC3_uc010inr.2_Intron|TRPC3_uc003ief.2_Missense_Mutation_p.A357V|TRPC3_uc011cgl.1_Missense_Mutation_p.A94V	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	345	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GAAGGCCCAGGGCCACGACCAG	0.54													22	34					0	0	0.004672	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274229	123274229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:123274229C>T	uc003ieh.2	+	79	14065	c.14020C>T	c.(14020-14022)CGT>TGT	p.R4674C	KIAA1109_uc003iem.2_Missense_Mutation_p.R1030C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4674					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCCAAATTTTCGTTCAAAATC	0.368													22	46					0	0	0.014323	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590189	125590189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:125590189C>T	uc003ifg.3	-	3	4509	c.4243G>A	c.(4243-4245)GAA>AAA	p.E1415K	ANKRD50_uc011cgo.1_Missense_Mutation_p.E1236K|ANKRD50_uc010inw.2_Missense_Mutation_p.E1415K	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1415										central_nervous_system(1)	1						TCAGAACCTTCAATCTGAAGC	0.363													9	36					0	0	0.010729	0	0
FAT4	79633	broad.mit.edu	37	4	126411253	126411253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:126411253C>T	uc003ifj.3	+	17	13276	c.13276C>T	c.(13276-13278)CCT>TCT	p.P4426S	FAT4_uc011cgp.1_Missense_Mutation_p.P2667S|FAT4_uc003ifi.1_Missense_Mutation_p.P1903S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4426	EGF-like 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGGTGTGTCCCTCCTGGGGA	0.607													45	62					0	0	0.008740	0	0
INTU	27152	broad.mit.edu	37	4	128564862	128564862	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:128564862C>T	uc003ifk.1	+	2	403	c.333C>T	c.(331-333)CTC>CTT	p.L111L	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	111										ovary(1)	1						AACCCAAACTCAAGCAGTTTA	0.358													35	57					0	0	0.012213	0	0
HSPA4L	22824	broad.mit.edu	37	4	128732671	128732671	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:128732671C>T	uc003ifm.2	+	12	1711	c.1458C>T	c.(1456-1458)ATC>ATT	p.I486I	HSPA4L_uc010iny.1_Silent_p.I445I|HSPA4L_uc011cgr.1_Silent_p.I453I	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	486					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GTGTTAACATCCATGGAATCT	0.393													23	46					0	0	0.003330	0	0
PCDH18	54510	broad.mit.edu	37	4	138449647	138449647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:138449647C>T	uc003ihe.3	-	3	3112	c.2725G>A	c.(2725-2727)GGA>AGA	p.G909R	PCDH18_uc003ihf.3_Missense_Mutation_p.G901R|PCDH18_uc011cgz.1_Missense_Mutation_p.G120R|PCDH18_uc003ihg.3_Missense_Mutation_p.G688R|PCDH18_uc011cha.1_Missense_Mutation_p.G89R	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	909	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGAATTCTTCCATCTGTGAGA	0.418													84	151					0	0	0.014410	0	0
PCDH18	54510	broad.mit.edu	37	4	138449706	138449706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:138449706C>T	uc003ihe.3	-	3	3053	c.2666G>A	c.(2665-2667)CGA>CAA	p.R889Q	PCDH18_uc003ihf.3_Missense_Mutation_p.R881Q|PCDH18_uc011cgz.1_Missense_Mutation_p.R100Q|PCDH18_uc003ihg.3_Missense_Mutation_p.R668Q|PCDH18_uc011cha.1_Missense_Mutation_p.R69Q	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	889	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGGAGAATCTCGCCCCAAATC	0.448													48	242					0	0	0.014410	0	0
PCDH18	54510	broad.mit.edu	37	4	138452065	138452065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:138452065C>T	uc003ihe.3	-	1	1565	c.1178G>A	c.(1177-1179)GGA>GAA	p.G393E	PCDH18_uc003ihf.3_Missense_Mutation_p.G386E|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.G173E|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	393	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AACTATTTCTCCATTCAGCCC	0.353													26	54					0	0	0.008361	0	0
PCDH18	54510	broad.mit.edu	37	4	138452734	138452734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:138452734G>A	uc003ihe.3	-	1	896	c.509C>T	c.(508-510)TCC>TTC	p.S170F	PCDH18_uc003ihf.3_Missense_Mutation_p.S163F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	170	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTGTGGAGGGAATTTTCCCC	0.458													15	31					0	0	0.003163	0	0
SLC7A11	23657	broad.mit.edu	37	4	139100404	139100404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:139100404C>T	uc011chb.1	-	11	1691	c.1411G>A	c.(1411-1413)GAC>AAC	p.D471N		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	471	Cytoplasmic (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	GGTTTCTTGTCCCATATAATA	0.418													31	50					0	0	0.013726	0	0
ELF2	1998	broad.mit.edu	37	4	139980139	139980139	+	Nonstop_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:139980139A>C	uc003ihp.1	-	9	1950	c.1744T>G	c.(1744-1746)TAA>GAA	p.*582E	ELF2_uc003ihm.1_Nonstop_Mutation_p.*534E|ELF2_uc003ihn.1_Nonstop_Mutation_p.*522E|ELF2_uc003iho.1_Nonstop_Mutation_p.*505E|ELF2_uc011chc.1_Nonstop_Mutation_p.*397E	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	582					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					CTGCTATTTTATTTCTCACAT	0.418													32	46					0	0	0.003271	0	0
CLGN	1047	broad.mit.edu	37	4	141317292	141317292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:141317292C>T	uc011chi.1	-	10	1170	c.952G>A	c.(952-954)GAA>AAA	p.E318K	CLGN_uc003iii.2_Missense_Mutation_p.E318K	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	318	Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					AATTTTGGTTCATCATCAAGC	0.348													47	93					0	0	0.014410	0	0
GYPB	2994	broad.mit.edu	37	4	144922345	144922345	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:144922345C>T	uc003ijm.1	-	2	185	c.129G>A	c.(127-129)CAG>CAA	p.Q43Q	GYPA_uc003ijn.2_Intron|GYPB_uc011chs.1_RNA|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_RNA|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_Intron|GYPB_uc011chw.1_Intron|GYPB_uc011chx.1_Intron|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA	NM_002100	NP_002091	P06028	GLPB_HUMAN	glycophorin B precursor	43	Extracellular (Potential).					integral to plasma membrane					0	all_hematologic(180;0.158)					AACCATTTGTCTGTGATGAGA	0.373													29	75					0	0	0.005524	0	0
HHIP	64399	broad.mit.edu	37	4	145567837	145567837	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:145567837A>C	uc003ijs.1	+	1	665	c.10A>C	c.(10-12)ATG>CTG	p.M4L	uc003ijq.1_5'Flank|HHIP_uc003ijr.1_Missense_Mutation_p.M4L	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	4						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GATGCTGAAGATGCTCTCCTT	0.627											OREG0016346	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	69					0	0	0.010771	0	0
PRMT10	90826	broad.mit.edu	37	4	148575007	148575007	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:148575007A>G	uc003ilc.2	-	9	2183	c.2041T>C	c.(2041-2043)TCC>CCC	p.S681P	PRMT10_uc003ilb.2_Missense_Mutation_p.S325P|PRMT10_uc003ild.2_Missense_Mutation_p.S568P	NM_138364	NP_612373	Q6P2P2	ANM10_HUMAN	protein arginine methyltransferase 10	681						cytoplasm	binding|protein methyltransferase activity			ovary(1)|central_nervous_system(1)	2						TTTTACCTGGATATTGCAGCT	0.318													9	40					0	0	0.006214	0	0
LRBA	987	broad.mit.edu	37	4	151356790	151356790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:151356790G>A	uc010ipj.2	-	47	7499	c.7025C>T	c.(7024-7026)TCA>TTA	p.S2342L	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Missense_Mutation_p.S232L|LRBA_uc003ilt.3_Missense_Mutation_p.S990L|LRBA_uc003ilu.3_Missense_Mutation_p.S2331L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2342	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCTGGAAATTGATGAAAAAGT	0.333													34	70					0	0	0.013726	0	0
SH3D19	152503	broad.mit.edu	37	4	152058918	152058918	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:152058918A>G	uc010ipl.1	-	15	2712	c.1622T>C	c.(1621-1623)ATT>ACT	p.I541T	SH3D19_uc003imb.2_Missense_Mutation_p.I296T|SH3D19_uc003imc.2_Missense_Mutation_p.I482T|SH3D19_uc003ime.2_Missense_Mutation_p.I518T|SH3D19_uc010ipm.2_Missense_Mutation_p.I518T	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	541	SH3 2.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				AAATATGCCAATCTGGTTTCT	0.383													21	50					0	0	0.005443	0	0
DCHS2	54798	broad.mit.edu	37	4	155241618	155241618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:155241618C>T	uc003inw.2	-	14	3568	c.3568G>A	c.(3568-3570)GAT>AAT	p.D1190N		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1190	Cadherin 10.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCGTCTGGATCGTGAGCAGTT	0.453													81	122					0	0	0.014410	0	0
FGG	2266	broad.mit.edu	37	4	155530823	155530823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:155530823C>T	uc003ioj.2	-	6	766	c.625G>A	c.(625-627)GAA>AAA	p.E209K	FGG_uc003iog.2_Missense_Mutation_p.E209K|FGG_uc003ioh.2_Missense_Mutation_p.E217K|FGG_uc010ipx.2_Missense_Mutation_p.E37K|FGG_uc010ipy.2_5'UTR|FGG_uc003ioi.2_5'UTR|FGG_uc003iok.2_Missense_Mutation_p.E217K	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	209	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	CCATCGATTTCACAGTAGACT	0.358													9	64					0	0	0.006214	0	0
LRAT	9227	broad.mit.edu	37	4	155665582	155665582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:155665582G>A	uc003iom.1	+	1	431	c.104G>A	c.(103-105)GGG>GAG	p.G35E	uc003iol.2_Intron|LRAT_uc003ion.1_Missense_Mutation_p.G35E	NM_004744	NP_004735	O95237	LRAT_HUMAN	lecithin retinol acyltransferase	35	Cytoplasmic (By similarity).				response to stimulus|retinoid metabolic process|steroid metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|multivesicular body|perinuclear region of cytoplasm|rough endoplasmic reticulum	phosphatidylcholine-retinol O-acyltransferase activity			central_nervous_system(1)	1	all_hematologic(180;0.215)	Renal(120;0.0458)			Vitamin A(DB00162)	GAAGACAAAGGGAGGAACAGT	0.557													25	43					0	0	0.002780	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156618194	156618194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:156618194C>T	uc003iov.2	+	4	711	c.175C>T	c.(175-177)CTT>TTT	p.L59F	GUCY1A3_uc003iou.2_Missense_Mutation_p.L59F|GUCY1A3_uc010iqc.2_Missense_Mutation_p.L59F|GUCY1A3_uc003iow.2_Missense_Mutation_p.L59F|GUCY1A3_uc010iqd.2_Missense_Mutation_p.L59F|GUCY1A3_uc003iox.2_Missense_Mutation_p.L59F|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.L59F|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.L59F	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	59					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ACAAGAAAGTCTTCCTCAAAG	0.473													38	51					0	0	0.004878	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156629446	156629446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:156629446G>A	uc003iov.2	+	6	912	c.376G>A	c.(376-378)GGA>AGA	p.G126R	GUCY1A3_uc003iou.2_Missense_Mutation_p.G126R|GUCY1A3_uc010iqc.2_Missense_Mutation_p.G126R|GUCY1A3_uc003iow.2_Missense_Mutation_p.G126R|GUCY1A3_uc010iqd.2_Missense_Mutation_p.V126I|GUCY1A3_uc003iox.2_Missense_Mutation_p.G126R|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.G126R|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.G126R	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	126				AAGV -> QQS (in Ref. 1; CAA47145).	blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AGTTGCAGCAGGTAATAGAAT	0.294													21	59					0	0	0.004656	0	0
GRIA2	2891	broad.mit.edu	37	4	158281129	158281129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:158281129G>A	uc003ipm.3	+	13	2584	c.2125G>A	c.(2125-2127)GAA>AAA	p.E709K	GRIA2_uc011cit.1_Missense_Mutation_p.E662K|GRIA2_uc003ipl.3_Missense_Mutation_p.E709K|GRIA2_uc003ipk.3_Missense_Mutation_p.E662K|GRIA2_uc010iqh.1_RNA|GRIA2_uc011ciu.1_Missense_Mutation_p.E19K|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_Missense_Mutation_p.E19K|GRIA2_uc011ciy.1_Missense_Mutation_p.E19K|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	709	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	GACTACGGCCGAAGGGGTGGC	0.498													17	45					0	0	0.008871	0	0
FNIP2	57600	broad.mit.edu	37	4	159782870	159782870	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:159782870C>T	uc003iqe.3	+	12	1590	c.1407C>T	c.(1405-1407)TCC>TCT	p.S469S		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	469					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		AACGTACCTCCCAGTCAGTGA	0.493													50	103					0	0	0.014410	0	0
NPY1R	4886	broad.mit.edu	37	4	164247270	164247270	+	Missense_Mutation	SNP	C	T	T	rs148479836		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:164247270C>T	uc003iqm.1	-	2	703	c.437G>A	c.(436-438)CGA>CAA	p.R146Q	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	146	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCTCCACCCTCGAGGGTTGAT	0.423													23	45					0	0	0.002780	0	0
TKTL2	84076	broad.mit.edu	37	4	164393863	164393863	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:164393863G>A	uc003iqp.3	-	1	1185	c.1024C>T	c.(1024-1026)CTG>TTG	p.L342L		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	342						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCACCACTCAGaacaataact	0.209													40	62					0	0	0.009718	0	0
CPE	1363	broad.mit.edu	37	4	166388870	166388870	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:166388870C>T	uc003irg.3	+	3	812	c.535C>T	c.(535-537)CGA>TGA	p.R179*		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	179					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTTTGTGGGTCGAAGCAATGC	0.388													11	32					0	0	0.010729	0	0
CPE	1363	broad.mit.edu	37	4	166405696	166405696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:166405696G>A	uc003irg.3	+	5	1190	c.913G>A	c.(913-915)GAT>AAT	p.D305N		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	305					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CAAGAATGATGATGACAGCAG	0.517													118	249					0	0	0.014410	0	0
TLL1	7092	broad.mit.edu	37	4	166913967	166913967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:166913967G>A	uc003irh.1	+	3	939	c.292G>A	c.(292-294)GAC>AAC	p.D98N	TLL1_uc011cjn.1_Missense_Mutation_p.D98N|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	98					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGGACTTGGAGACCATGCTAT	0.358													24	49					0	0	0.004656	0	0
TLL1	7092	broad.mit.edu	37	4	166946521	166946521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:166946521C>T	uc003irh.1	+	9	1743	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	TLL1_uc011cjn.1_Missense_Mutation_p.P366S|TLL1_uc011cjo.1_Missense_Mutation_p.P190S	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	366	CUB 1.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCCAGGATTTCCCAATGGCTA	0.383													45	76					0	0	0.014410	0	0
DDX60	55601	broad.mit.edu	37	4	169176899	169176899	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:169176899G>A	uc003irp.2	-	26	3812	c.3520C>T	c.(3520-3522)CGA>TGA	p.R1174*		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1174							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTAACTTTTCGAAGTTTGTTA	0.373													10	38					0	0	0.010729	0	0
DDX60	55601	broad.mit.edu	37	4	169212958	169212958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:169212958C>T	uc003irp.2	-	8	1274	c.982G>A	c.(982-984)GCT>ACT	p.A328T		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	328							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CTAGCACAAGCTCTTTGAGAA	0.388													21	36					0	0	0.014323	0	0
DDX60L	91351	broad.mit.edu	37	4	169279421	169279421	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:169279421G>A	uc003irq.3	-	38	5219	c.4998C>T	c.(4996-4998)TCC>TCT	p.S1666S		NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1666							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GTTCACTCAAGGAGTCACTGt	0.289													8	18					0	0	0.003080	0	0
PALLD	23022	broad.mit.edu	37	4	169632817	169632817	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:169632817G>A	uc011cjx.1	+	10	1918	c.1707G>A	c.(1705-1707)TTG>TTA	p.L569L	PALLD_uc003iru.2_Silent_p.L569L|PALLD_uc003irv.2_Silent_p.L187L	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	569					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CTCCAATCTTGGAGACAAGTT	0.483									Pancreatic_Cancer_Familial_Clustering_of				18	37					0	0	0.004990	0	0
PALLD	23022	broad.mit.edu	37	4	169815749	169815749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:169815749G>A	uc011cjx.1	+	12	2331	c.2120G>A	c.(2119-2121)AGA>AAA	p.R707K	CBR4_uc011cjy.1_RNA|PALLD_uc003iru.2_Missense_Mutation_p.R707K|PALLD_uc003irv.2_Missense_Mutation_p.R325K|PALLD_uc003irw.2_Missense_Mutation_p.R209K	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	931					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		TACGAAGAAAGAATGGCTCGT	0.373									Pancreatic_Cancer_Familial_Clustering_of				8	13					0	0	0.001855	0	0
GALNT7	51809	broad.mit.edu	37	4	174225180	174225180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:174225180C>T	uc003isz.3	+	8	1383	c.1300C>T	c.(1300-1302)CCT>TCT	p.P434S	GALNT7_uc011ckb.1_Missense_Mutation_p.P211S	NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7	434	Catalytic subdomain B.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		ATTATTTGTTCCTTGTTCTCG	0.383													40	78					0	0	0.006999	0	0
MORF4	10934	broad.mit.edu	37	4	174537429	174537429	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:174537429C>T	uc011cke.1	-	1	366	c.366G>A	c.(364-366)AAG>AAA	p.K122K		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		CTGCATACTCCTTATTATCTG	0.408													91	174					0	0	0.014410	0	0
MORF4	10934	broad.mit.edu	37	4	174537479	174537479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:174537479G>A	uc011cke.1	-	1	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TAGTCCTCAAGAATGGAATCC	0.393													87	157					0	0	0.014410	0	0
VEGFC	7424	broad.mit.edu	37	4	177608341	177608341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:177608341C>T	uc003ius.1	-	6	1575	c.1145G>A	c.(1144-1146)AGC>AAC	p.S382N		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	382					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GATCTCTTACCTGCATGTTTG	0.348													65	86					0	0	0.014410	0	0
VEGFC	7424	broad.mit.edu	37	4	177648941	177648941	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:177648941G>A	uc003ius.1	-	3	973	c.543C>T	c.(541-543)CTC>CTT	p.L181L		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	181					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		CCGTCTTGCTGAGGTAGCTCG	0.498													32	52					0	0	0.012213	0	0
ODZ3	55714	broad.mit.edu	37	4	183675766	183675766	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:183675766C>T	uc003ivd.1	+	21	4283	c.4246C>T	c.(4246-4248)CTG>TTG	p.L1416L	ODZ3_uc003ive.1_Silent_p.L829L	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1416	Extracellular (Potential).|NHL 4.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGTGGGGTCCTGTACATTAC	0.502													12	35					0	0	0.013537	0	0
ODZ3	55714	broad.mit.edu	37	4	183714840	183714840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:183714840C>T	uc003ivd.1	+	25	7052	c.7015C>T	c.(7015-7017)CAT>TAT	p.H2339Y		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2339	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AATTGGATTTCATGGTGGCCT	0.403													45	64					0	0	0.014410	0	0
ENPP6	133121	broad.mit.edu	37	4	185039019	185039019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:185039019C>T	uc003iwc.2	-	4	710	c.568G>A	c.(568-570)GAG>AAG	p.E190K		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	190	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TCAATGCGCTCATGGTATATG	0.607													27	42					0	0	0.003954	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455424	187455424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:187455424C>T	uc003izd.1	-	2	490	c.472G>A	c.(472-474)GCC>ACC	p.A158T		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	158	Helical; Name=4; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GGCAGGACGGCCGCCAGCGTC	0.602													22	45					0	0	0.002780	0	0
FAT1	2195	broad.mit.edu	37	4	187534477	187534477	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:187534477G>A	uc003izf.2	-	13	9437	c.9249C>T	c.(9247-9249)ACC>ACT	p.T3083T		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3083	Extracellular (Potential).|Cadherin 28.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GATCAAGGGGGGTTGACGTTT	0.448										HNSCC(5;0.00058)			30	47					0	0	0.010818	0	0
FAT1	2195	broad.mit.edu	37	4	187630175	187630175	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:187630175C>A	uc003izf.2	-	2	995	c.807G>T	c.(805-807)AGG>AGT	p.R269S	FAT1_uc010iso.1_Missense_Mutation_p.R269S	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	269	Extracellular (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATGCTGGGTCCCTGTCCAGTT	0.517										HNSCC(5;0.00058)			8	281					0.00829132	0.00905776	0.008291	1	0
TRIML2	205860	broad.mit.edu	37	4	189012773	189012773	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:189012773G>A	uc003izl.2	-	7	954	c.918C>T	c.(916-918)CCC>CCT	p.P306P	TRIML2_uc003izj.1_Silent_p.P134P|TRIML2_uc003izk.1_Silent_p.P114P|TRIML2_uc011cle.1_Silent_p.P381P	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	306	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TTTTCAGAGGGGGGAAGACCC	0.557													75	137					0	0	0.014410	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	140666	140666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140666C>T	uc003jak.2	+	1	294	c.244C>T	c.(244-246)CGG>TGG	p.R82W		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	82					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CAGGAGATCTCGGTCCTGGGA	0.672													3	7					0	0	0.004672	0	0
SLC6A19	340024	broad.mit.edu	37	5	1208876	1208876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:1208876C>T	uc003jbw.3	+	2	274	c.218C>T	c.(217-219)CCG>CTG	p.P73L		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	73	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TTCATGATCCCGTTCCTCATC	0.657													37	102					0	0	0.009718	0	0
SLC6A18	348932	broad.mit.edu	37	5	1232870	1232870	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:1232870G>A	uc003jby.1	+	3	429	c.306G>A	c.(304-306)CTG>CTA	p.L102L		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	102	Helical; Name=3; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCACAGGGCTGGGCTGTGTCA	0.562													24	42					0	0	0.004656	0	0
SLC6A18	348932	broad.mit.edu	37	5	1239651	1239651	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:1239651C>T	uc003jby.1	+	6	942	c.819C>T	c.(817-819)ATC>ATT	p.I273I		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	273	Helical; Name=6; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GAGGACACATCGCTTTTGCAA	0.582													16	82					0	0	0.004990	0	0
SLC6A18	348932	broad.mit.edu	37	5	1242957	1242957	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:1242957C>T	uc003jby.1	+	8	1233	c.1110C>T	c.(1108-1110)CTC>CTT	p.L370L		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	370	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AGGCCTGCCTCCTGGAAGACT	0.657													24	48					0	0	0.005443	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441550	1441550	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:1441550G>A	uc003jck.2	-	3	463	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	114	Helical; Name=2; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	GCTCCATGTAGAAAAGTGGCA	0.577													20	31					0	0	0.007413	0	0
IRX1	79192	broad.mit.edu	37	5	3599663	3599663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:3599663G>A	uc003jde.2	+	2	653	c.601G>A	c.(601-603)GAA>AAA	p.E201K		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	201						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						CAAGGACCAGGAAGATGGAGC	0.622													19	43					0	0	0.006122	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5242225	5242225	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:5242225G>A	uc003jdl.2	+	17	2721	c.2583G>A	c.(2581-2583)GGG>GGA	p.G861G	ADAMTS16_uc003jdk.1_Silent_p.G861G	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	861	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CTCGCTTGGGGACCGAGAAGC	0.562													34	54					0	0	0.004878	0	0
CTNND2	1501	broad.mit.edu	37	5	10981905	10981905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:10981905C>T	uc003jfa.1	-	21	3542	c.3397G>A	c.(3397-3399)GAA>AAA	p.E1133K	CTNND2_uc010itt.2_Missense_Mutation_p.E1042K|CTNND2_uc011cmy.1_Missense_Mutation_p.E796K|CTNND2_uc011cmz.1_Missense_Mutation_p.E700K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.E725K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1133					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTGATGTCTTCAGCGGGCGCA	0.338													24	124					0	0	0.014323	0	0
CTNND2	1501	broad.mit.edu	37	5	10988308	10988308	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:10988308C>T	uc003jfa.1	-	20	3403	c.3258G>A	c.(3256-3258)AGG>AGA	p.R1086R	CTNND2_uc010itt.2_Silent_p.R995R|CTNND2_uc011cmy.1_Silent_p.R749R|CTNND2_uc011cmz.1_Silent_p.R653R|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.R678R	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1086					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGTCTGTTTTCCTTTCTTTGA	0.527											OREG0016517	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	70					0	0	0.007291	0	0
DNAH5	1767	broad.mit.edu	37	5	13721235	13721235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:13721235C>T	uc003jfd.2	-	71	12195	c.12153G>A	c.(12151-12153)ATG>ATA	p.M4051I	DNAH5_uc003jfc.2_Missense_Mutation_p.M219I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4051	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTCTGAGCCCATAGACAGGA	0.498									Kartagener_syndrome				41	94					0	0	0.008740	0	0
DNAH5	1767	broad.mit.edu	37	5	13735322	13735322	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:13735322G>A	uc003jfd.2	-	68	11721	c.11679C>T	c.(11677-11679)TTC>TTT	p.F3893F	DNAH5_uc003jfc.2_Silent_p.F61F	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3893					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGTGAACAGGAATTTGTGCT	0.433									Kartagener_syndrome				23	39					0	0	0.003954	0	0
DNAH5	1767	broad.mit.edu	37	5	13793798	13793798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:13793798C>T	uc003jfd.2	-	49	8092	c.8050G>A	c.(8050-8052)GGA>AGA	p.G2684R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2684	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTATAGAATCCATTTTGTTCC	0.458									Kartagener_syndrome				31	82					0	0	0.009535	0	0
DNAH5	1767	broad.mit.edu	37	5	13871769	13871769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:13871769C>T	uc003jfd.2	-	23	3544	c.3502G>A	c.(3502-3504)GAA>AAA	p.E1168K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1168	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACTCAAATTCAGAAAGCAAG	0.403									Kartagener_syndrome				25	36					0	0	0.002780	0	0
FAM134B	54463	broad.mit.edu	37	5	16474881	16474881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:16474881C>T	uc003jfs.2	-	9	1501	c.1463G>A	c.(1462-1464)GGT>GAT	p.G488D	FAM134B_uc003jfr.2_Missense_Mutation_p.G347D	NM_001034850	NP_001030022	Q9H6L5	F134B_HUMAN	hypothetical protein LOC54463 isoform 1	488					sensory perception of pain	cis-Golgi network|endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3						TGAAAGGAAACCTGAAGACTT	0.363													12	83					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	5	17354287	17354287	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:17354287G>A	uc003jfy.2	-	1		c.442C>T			uc003jfz.2_RNA					full-length cDNA clone CS0DC022YF01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		ATATCCTGAAGGAAGATTCGG	0.453													34	93					0	0	0.004878	0	0
CDH12	1010	broad.mit.edu	37	5	21755927	21755927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:21755927C>T	uc010iuc.2	-	11	2116	c.1658G>A	c.(1657-1659)CGA>CAA	p.R553Q	CDH12_uc011cno.1_Missense_Mutation_p.R513Q|CDH12_uc003jgk.2_Missense_Mutation_p.R553Q|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	553	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCCATTTCTTCGGGTTTCAAT	0.428										HNSCC(59;0.17)			27	39					0	0	0.010818	0	0
CDH12	1010	broad.mit.edu	37	5	21802333	21802333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:21802333C>T	uc010iuc.2	-	7	1657	c.1199G>A	c.(1198-1200)GGG>GAG	p.G400E	CDH12_uc011cno.1_Missense_Mutation_p.G360E|CDH12_uc003jgk.2_Missense_Mutation_p.G400E	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	400	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						AATGATGGTCCCTACCGGAGT	0.483										HNSCC(59;0.17)			19	31					0	0	0.007413	0	0
CDH12	1010	broad.mit.edu	37	5	21854885	21854885	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:21854885G>A	uc010iuc.2	-	4	999	c.541C>T	c.(541-543)CAG>TAG	p.Q181*	CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Nonsense_Mutation_p.Q181*	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	181	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GCCTTGACCTGGAGTACATAT	0.418										HNSCC(59;0.17)			19	28					0	0	0.007413	0	0
PRDM9	56979	broad.mit.edu	37	5	23526462	23526462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:23526462G>A	uc003jgo.2	+	11	1447	c.1265G>A	c.(1264-1266)AGA>AAA	p.R422K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	422					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CCATCTGCAAGAAAACTCCTC	0.483										HNSCC(3;0.000094)			36	67					0	0	0.006230	0	0
PRDM9	56979	broad.mit.edu	37	5	23526840	23526840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:23526840G>A	uc003jgo.2	+	11	1825	c.1643G>A	c.(1642-1644)GGG>GAG	p.G548E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	548					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACATACAGGGGAGAAGCTC	0.488										HNSCC(3;0.000094)			33	67					0	0	0.009535	0	0
PRDM9	56979	broad.mit.edu	37	5	23527010	23527010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:23527010G>A	uc003jgo.2	+	11	1995	c.1813G>A	c.(1813-1815)GAG>AAG	p.E605K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	605					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACACAGGGGAGAAGCCCTA	0.602										HNSCC(3;0.000094)			38	66					0	0	0.014410	0	0
PRDM9	56979	broad.mit.edu	37	5	23527680	23527680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:23527680G>A	uc003jgo.2	+	11	2665	c.2483G>A	c.(2482-2484)GGG>GAG	p.G828E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	828					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACACACAGGGGAGAAGCCC	0.582										HNSCC(3;0.000094)			48	95					0	0	0.014410	0	0
CDH9	1007	broad.mit.edu	37	5	26915930	26915930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:26915930G>A	uc003jgs.1	-	3	500	c.331C>T	c.(331-333)CAT>TAT	p.H111Y	CDH9_uc010iug.2_Missense_Mutation_p.H111Y	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	111	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTGCAGCATGAATGTCTCCT	0.413													62	98					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	5	28927204	28927204	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:28927204G>A	uc003jgz.1	+	1		c.228G>A								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		TCGTGAGGATGATCAGAATGT	0.448													16	27					0	0	0.003163	0	0
CDH6	1004	broad.mit.edu	37	5	31322998	31322998	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:31322998C>T	uc003jhe.1	+	12	2282	c.1956C>T	c.(1954-1956)ATC>ATT	p.I652I		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	652	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AAGAGGACATCAGAGATAACA	0.483													27	41					0	0	0.006320	0	0
CDH6	1004	broad.mit.edu	37	5	31323218	31323218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:31323218G>A	uc003jhe.1	+	12	2502	c.2176G>A	c.(2176-2178)GAC>AAC	p.D726N		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	726	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AAATGACACGGACCCCACTGC	0.567													15	30					0	0	0.004007	0	0
PDZD2	23037	broad.mit.edu	37	5	32091181	32091181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:32091181G>A	uc003jhl.2	+	20	8015	c.7627G>A	c.(7627-7629)GGA>AGA	p.G2543R	PDZD2_uc003jhm.2_Missense_Mutation_p.G2543R	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2543					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTGTCCAGGAGGAAGTGGCCC	0.577													17	42					0	0	0.006122	0	0
ZFR	51663	broad.mit.edu	37	5	32385616	32385617	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:32385616_32385617CC>TT	uc003jhr.1	-	15	2718_2719	c.2638_2639GG>AA	c.(2638-2640)GGA>AAA	p.G880K	ZFR_uc010ium.1_5'Flank|ZFR_uc011cny.1_RNA	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	880	DZF.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		TTTCCAACCTCCTTCCCTCATG	0.371													34	78					0	0	0.004672	0	0
SLC45A2	51151	broad.mit.edu	37	5	33947399	33947399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:33947399C>T	uc003jid.2	-	6	1329	c.1237G>A	c.(1237-1239)GGA>AGA	p.G413R	SLC45A2_uc003jie.2_Missense_Mutation_p.G413R	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	413	Helical; Name=9; (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CCAATAAATCCCGTCCCCAGG	0.483													45	111					0	0	0.014410	0	0
CAPSL	133690	broad.mit.edu	37	5	35910596	35910596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:35910596C>T	uc003jjt.1	-	3	282	c.187G>A	c.(187-189)GAA>AAA	p.E63K	CAPSL_uc003jju.1_Missense_Mutation_p.E63K	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	63	EF-hand 1.|1 (Potential).					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			TTCATAAATTCTTTAAAATCA	0.323													19	51					0	0	0.012319	0	0
UGT3A1	133688	broad.mit.edu	37	5	35957327	35957327	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:35957327C>T	uc003jjv.1	-	5	1195	c.1038G>A	c.(1036-1038)GTG>GTA	p.V346V	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.V346V|UGT3A1_uc011cor.1_Silent_p.V312V	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	346	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCACAATTTTCACATTTGTGG	0.488													16	33					0	0	0.006122	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965514	35965514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:35965514C>T	uc003jjv.1	-	4	974	c.817G>A	c.(817-819)GAA>AAA	p.E273K	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.E273K|UGT3A1_uc011cor.1_Missense_Mutation_p.E239K|UGT3A1_uc003jjy.1_Missense_Mutation_p.E219K	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	273	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATAGGTTTTTCCATCAAGCCT	0.453													29	53					0	0	0.010818	0	0
UGT3A1	133688	broad.mit.edu	37	5	35991338	35991338	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:35991338A>G	uc003jjv.1	-	1	162	c.5T>C	c.(4-6)GTT>GCT	p.V2A	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.V2A|UGT3A1_uc011cor.1_Missense_Mutation_p.V2A|UGT3A1_uc003jjy.1_Intron	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	2						integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCGCTGCCCAACCATGCTCAC	0.597													31	54					0	0	0.010818	0	0
OSMR	9180	broad.mit.edu	37	5	38884197	38884197	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:38884197C>T	uc003jln.1	+	5	1054	c.687C>T	c.(685-687)ATC>ATT	p.I229I	OSMR_uc003jlm.1_Silent_p.I229I	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	229	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TGAAAGGCATCGTTCTTTTTG	0.373													53	100					0	0	0.014410	0	0
C7	730	broad.mit.edu	37	5	40947812	40947812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:40947812C>T	uc003jmh.2	+	8	961	c.847C>T	c.(847-849)CTC>TTC	p.L283F	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	283	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GCTTTCCCACCTCCCCTCTCT	0.448													32	51					0	0	0.012213	0	0
C7	730	broad.mit.edu	37	5	40950039	40950039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:40950039C>T	uc003jmh.2	+	9	1130	c.1016C>T	c.(1015-1017)TCC>TTC	p.S339F	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	339	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				AAATGTAAATCCTCAGGTTGG	0.348													13	13					0	0	0.002450	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41032918	41032918	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:41032918G>A	uc003jmj.3	-	24	2857	c.2367C>T	c.(2365-2367)TTC>TTT	p.F789F	HEATR7B2_uc003jmi.3_Silent_p.F344F	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	789	HEAT 9.						binding			ovary(6)|central_nervous_system(2)	8						CGTCTCTAATGAAGTCCTGAA	0.428													9	13					0	0	0.004482	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41058177	41058177	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:41058177G>A	uc003jmj.3	-	7	1234	c.744C>T	c.(742-744)TTC>TTT	p.F248F	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	248	HEAT 2.						binding			ovary(6)|central_nervous_system(2)	8						GAGTGACATGGAAATCAATCT	0.527													17	38					0	0	0.010504	0	0
C6	729	broad.mit.edu	37	5	41155184	41155184	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:41155184A>C	uc003jmk.2	-	14	2201	c.1991T>G	c.(1990-1992)GTT>GGT	p.V664G	C6_uc003jml.1_Missense_Mutation_p.V664G	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	664	Sushi 1.|C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATCTTCTCCAACCAAGTATAG	0.383													37	41					0	0	0.006999	0	0
MGC42105	167359	broad.mit.edu	37	5	43246072	43246072	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:43246072C>T	uc003jno.2	+	2	1076	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	65							ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						TGAGGGAGATCACGCTGGGGA	0.547													42	44					0	0	0.008740	0	0
PAIP1	10605	broad.mit.edu	37	5	43529903	43529903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:43529903G>A	uc003job.2	-	10	1578	c.1331C>T	c.(1330-1332)TCC>TTC	p.S444F	PAIP1_uc003joa.2_Missense_Mutation_p.S365F|PAIP1_uc010ivp.2_Intron|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.S332F	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	444	PABPC1-interacting motif-1 (PAM1).				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					ACCAGCCCCGGATAAATCTGT	0.353													31	61					0	0	0.003271	0	0
HCN1	348980	broad.mit.edu	37	5	45262407	45262407	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:45262407C>T	uc003jok.2	-	8	2314	c.2289G>A	c.(2287-2289)CCG>CCA	p.P763P		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	763	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTTCATTTTTCGGCGTGGAGC	0.443													9	43					0	0	0.004482	0	0
EMB	133418	broad.mit.edu	37	5	49695120	49695120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:49695120G>A	uc003jom.2	-	9	1220	c.971C>T	c.(970-972)TCT>TTT	p.S324F	EMB_uc010ivq.2_Missense_Mutation_p.S118F|EMB_uc003jol.2_Missense_Mutation_p.S255F|EMB_uc011cpy.1_Missense_Mutation_p.S274F|EMB_uc010ivr.2_Missense_Mutation_p.S270F	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	324	Cytoplasmic (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				CTGGCCCAGAGACTCCTGAGT	0.338													16	39					0	0	0.008871	0	0
EMB	133418	broad.mit.edu	37	5	49699165	49699165	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:49699165G>A	uc003jom.2	-	6	973	c.724C>T	c.(724-726)CAA>TAA	p.Q242*	EMB_uc010ivq.2_Nonsense_Mutation_p.Q36*|EMB_uc003jol.2_Nonsense_Mutation_p.Q173*|EMB_uc011cpy.1_Nonsense_Mutation_p.Q192*|EMB_uc010ivr.2_Nonsense_Mutation_p.Q188*	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	242	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				TCGCCTAATTGGAATAGTGCA	0.413													16	60					0	0	0.006122	0	0
PELO	53918	broad.mit.edu	37	5	52096558	52096558	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:52096558C>T	uc003jos.2	+	2	1315	c.330C>T	c.(328-330)TTC>TTT	p.F110F	ITGA1_uc003jov.2_Intron|ITGA1_uc003jou.2_Intron|PELO_uc003jot.1_Intron	NM_015946	NP_057030	Q9BRX2	PELO_HUMAN	pelota homolog	110					cell cycle|cell division|translation	cytoplasm|nucleus	endonuclease activity|metal ion binding|protein binding				0		Lung NSC(810;4.94e-05)|Breast(144;0.0848)				ACCGCCAGTTCACCCTGGCCA	0.597													26	39					0	0	0.004656	0	0
ITGA1	3672	broad.mit.edu	37	5	52221113	52221113	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:52221113C>T	uc003jou.2	+	19	2461	c.2409C>T	c.(2407-2409)CCC>CCT	p.P803P	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Silent_p.P334P	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	803	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TTCAGATTCCCTTTGCCAAAG	0.393													10	37					0	0	0.006214	0	0
ITGA1	3672	broad.mit.edu	37	5	52229771	52229771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:52229771C>T	uc003jou.2	+	23	2961	c.2909C>T	c.(2908-2910)CCT>CTT	p.P970L	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.P501L	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	970	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity	p.P970S(1)		ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				GAGACAGTCCCTGAAGTTATT	0.274													21	38					0	0	0.009535	0	0
GZMA	3001	broad.mit.edu	37	5	54405854	54405854	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:54405854T>G	uc003jpm.2	+	5	670	c.633T>G	c.(631-633)GAT>GAG	p.D211E		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	211	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TCCAGGGAGATTCTGGAAGCC	0.478													21	12					0	0	0.012319	0	0
ACTBL2	345651	broad.mit.edu	37	5	56778202	56778202	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:56778202C>T	uc003jrm.2	-	1	435	c.333G>A	c.(331-333)CTG>CTA	p.L111L		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	111						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		TCTTGGGGTTCAGGGGTGCCT	0.527													12	31					0	0	0.010729	0	0
HTR1A	3350	broad.mit.edu	37	5	63256578	63256578	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:63256578C>T	uc011cqt.1	-	1	969	c.969G>A	c.(967-969)AGG>AGA	p.R323R		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	323	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCTCATTTTTCCTCTCGAAAG	0.607													28	53					0	0	0.009535	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483855	64483855	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:64483855C>T	uc003jtp.2	-	22	3712	c.2898G>A	c.(2896-2898)TTG>TTA	p.L966L	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	966	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CAGACCAGTCCAAAGCCACCC	0.453													63	69					0	0	0.014410	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64484034	64484034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:64484034C>T	uc003jtp.2	-	22	3533	c.2719G>A	c.(2719-2721)GAT>AAT	p.D907N	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	907	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TCCAACCAATCCCCAATGAAC	0.493													60	99					0	0	0.014410	0	0
ERBB2IP	55914	broad.mit.edu	37	5	65288687	65288687	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:65288687C>T	uc003juk.1	+	3	449	c.141C>T	c.(139-141)ACC>ACT	p.T47T	ERBB2IP_uc003juh.1_Silent_p.T47T|ERBB2IP_uc003jui.1_Silent_p.T47T|ERBB2IP_uc003juj.1_Silent_p.T47T|ERBB2IP_uc011cqx.1_Silent_p.T47T|ERBB2IP_uc011cqy.1_Silent_p.T47T|ERBB2IP_uc011cqz.1_Silent_p.T47T|ERBB2IP_uc010iwx.1_Silent_p.T47T|ERBB2IP_uc003jul.1_Silent_p.T47T	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	47	LRR 2.				basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		TTGAAAAAACCTTGGAGGAAC	0.353													14	33					0	0	0.002450	0	0
MAST4	375449	broad.mit.edu	37	5	66437978	66437978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:66437978C>T	uc003jut.1	+	19	2031	c.1963C>T	c.(1963-1965)CGT>TGT	p.R655C	MAST4_uc003juu.1_Missense_Mutation_p.R665C|MAST4_uc011cra.1_Missense_Mutation_p.R638C|MAST4_uc003juv.2_Missense_Mutation_p.R650C|MAST4_uc003juw.2_Missense_Mutation_p.R650C	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	847	AGC-kinase C-terminal.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCGATTCTTCCGTTCTTTAGA	0.428													53	98					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	5	68902955	68902955	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:68902955G>A	uc010ixi.1	+	1		c.30G>A								Homo sapiens cDNA, FLJ18088.																		CTAAAGGACGGACAGAGCATT	0.393													32	137					0	0	0.014410	0	0
HEXB	3074	broad.mit.edu	37	5	74012481	74012481	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:74012481A>T	uc003kdf.3	+	9	1269	c.1152A>T	c.(1150-1152)GAA>GAT	p.E384D	HEXB_uc003kdd.2_Missense_Mutation_p.E159D|HEXB_uc010izh.2_RNA|HEXB_uc003kdg.1_5'Flank|HEXB_uc010izi.1_5'Flank	NM_000521	NP_000512	P07686	HEXB_HUMAN	hexosaminidase B preproprotein	384					cell death	lysosome	cation binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.72e-57)		AGAAACTAGAATCTTTCTACA	0.269													11	32					0	0	0.002450	0	0
PDE8B	8622	broad.mit.edu	37	5	76709015	76709015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:76709015C>T	uc003kfa.2	+	17	1837	c.1792C>T	c.(1792-1794)CGG>TGG	p.R598W	PDE8B_uc003kfb.2_Missense_Mutation_p.R578W|PDE8B_uc003kfc.2_Missense_Mutation_p.R543W|PDE8B_uc003kfd.2_Missense_Mutation_p.R551W|PDE8B_uc003kfe.2_Missense_Mutation_p.R501W	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	598	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		AACCACTCTTCGGGCCTGGTT	0.483													226	393					0	0	0.014410	0	0
CMYA5	202333	broad.mit.edu	37	5	79032757	79032757	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:79032757C>T	uc003kgc.2	+	2	8241	c.8169C>T	c.(8167-8169)TTC>TTT	p.F2723F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2723						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTAAGACTTTCCTGCCAGTGG	0.393													15	16					0	0	0.003163	0	0
CMYA5	202333	broad.mit.edu	37	5	79033728	79033728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:79033728C>T	uc003kgc.2	+	2	9212	c.9140C>T	c.(9139-9141)CCC>CTC	p.P3047L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3047						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCCACAATTCCCAGTGAAGAG	0.328													29	48					0	0	0.007291	0	0
THBS4	7060	broad.mit.edu	37	5	79357628	79357628	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:79357628G>A	uc003kgh.2	+	9	1421	c.1098G>A	c.(1096-1098)GGG>GGA	p.G366G		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	366	EGF-like 2; calcium-binding (Potential).				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		AGGGTGTTGGGATCAGTTTTG	0.507													18	26					0	0	0.004990	0	0
VCAN	1462	broad.mit.edu	37	5	82815659	82815659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:82815659G>A	uc003kii.3	+	7	1890	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.E512K|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	512	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TCCTTCCAAGGAATTCCCTGT	0.378													37	58					0	0	0.004878	0	0
MEF2C	4208	broad.mit.edu	37	5	88047715	88047715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:88047715G>A	uc003kjj.2	-	5	1221	c.548C>T	c.(547-549)TCT>TTT	p.S183F	MEF2C_uc003kji.2_Missense_Mutation_p.S183F|MEF2C_uc003kjk.2_Missense_Mutation_p.S183F|MEF2C_uc003kjm.2_Missense_Mutation_p.S181F|MEF2C_uc003kjl.2_Missense_Mutation_p.S201F	NM_002397	NP_002388	Q06413	MEF2C_HUMAN	myocyte enhancer factor 2C isoform 1	183	Ser-rich.				apoptosis|B cell proliferation|innate immune response|learning or memory|muscle cell differentiation|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|neuron development|positive regulation of muscle cell differentiation|positive regulation of survival gene product expression|positive regulation of transcription from RNA polymerase II promoter|regulation of germinal center formation|regulation of megakaryocyte differentiation|regulation of synaptic activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nuclear speck	activating transcription factor binding|protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(3)|breast(2)|ovary(1)|large_intestine(1)	7		all_cancers(142;6.67e-05)|all_epithelial(76;7.77e-07)|Lung NSC(167;0.00566)|all_lung(232;0.00732)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;1.04e-33)|Epithelial(54;1.6e-28)|all cancers(79;2.9e-25)		TACACCAGGAGACATACTATT	0.478										HNSCC(66;0.2)			82	159					0	0	0.014410	0	0
GPR98	84059	broad.mit.edu	37	5	90024573	90024573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:90024573G>A	uc003kju.2	+	49	10345	c.10249G>A	c.(10249-10251)GGC>AGC	p.G3417S	GPR98_uc003kjt.2_Missense_Mutation_p.G1123S|GPR98_uc003kjv.2_Missense_Mutation_p.G1017S	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3417	EAR 4.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAACAAGGGAGGCTCTGTGTT	0.488													57	85					0	0	0.014410	0	0
GPR98	84059	broad.mit.edu	37	5	90055394	90055394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:90055394G>A	uc003kju.2	+	58	12205	c.12109G>A	c.(12109-12111)GAA>AAA	p.E4037K	GPR98_uc003kjt.2_Missense_Mutation_p.E1743K|GPR98_uc003kjv.2_Missense_Mutation_p.E1637K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4037	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATTTGGATTTGAAGAAAAGAC	0.378													7	24					0	0	0.004482	0	0
CAST	831	broad.mit.edu	37	5	96078387	96078387	+	Missense_Mutation	SNP	C	T	T	rs138552693		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:96078387C>T	uc003klz.1	+	14	1040	c.878C>T	c.(877-879)GCT>GTT	p.A293V	CAST_uc003klt.2_Missense_Mutation_p.A280V|CAST_uc003klu.2_Missense_Mutation_p.A376V|CAST_uc003klv.2_Missense_Mutation_p.A354V|CAST_uc003klw.2_Missense_Mutation_p.A357V|CAST_uc003klx.2_Missense_Mutation_p.A335V|CAST_uc003kly.2_Missense_Mutation_p.A341V|CAST_uc011cuo.1_Missense_Mutation_p.A339V|CAST_uc011cuq.1_Missense_Mutation_p.A141V|CAST_uc011cur.1_Missense_Mutation_p.A279V|CAST_uc011cus.1_Missense_Mutation_p.A280V|CAST_uc003kma.1_Missense_Mutation_p.A252V|CAST_uc011cut.1_Missense_Mutation_p.A221V|CAST_uc003kmb.2_Missense_Mutation_p.A239V|CAST_uc003kmc.2_Missense_Mutation_p.A293V|CAST_uc003kmd.2_Missense_Mutation_p.A271V|CAST_uc003kme.2_Missense_Mutation_p.A252V|CAST_uc003kmf.2_Missense_Mutation_p.A258V|CAST_uc003kmh.2_Missense_Mutation_p.A8V|CAST_uc010jbj.2_Missense_Mutation_p.A8V|CAST_uc010jbk.2_Missense_Mutation_p.A8V|CAST_uc010jbl.1_5'Flank|CAST_uc003kmi.2_5'Flank|CAST_uc003kmj.2_5'Flank	NM_001042443	NP_001035908	P20810	ICAL_HUMAN	calpastatin isoform i	293							calcium-dependent cysteine-type endopeptidase inhibitor activity|protein binding			central_nervous_system(3)|ovary(1)|kidney(1)	5		all_cancers(142;5.27e-07)|all_epithelial(76;8.21e-10)|all_lung(232;0.000396)|Lung NSC(167;0.000539)|Ovarian(225;0.024)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;6.85e-15)		GCACTCGAGGCTCTGTCGGCT	0.453													8	29					0	0	0.004482	0	0
LNPEP	4012	broad.mit.edu	37	5	96320900	96320900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:96320900C>T	uc003kmv.1	+	3	1491	c.977C>T	c.(976-978)ACC>ATC	p.T326I	LNPEP_uc003kmw.1_Missense_Mutation_p.T312I	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	326	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		GAGCAATACACCGCTTTATCA	0.378													30	67					0	0	0.009535	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607													4	9					0	0	0.009096	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101794093	101794093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:101794093G>A	uc003knn.2	-	6	1296	c.1124C>T	c.(1123-1125)GCT>GTT	p.A375V	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.A375V|SLCO6A1_uc003knq.2_Missense_Mutation_p.A313V	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	375	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TACCCAAAGAGCAGCACATAA	0.313													48	87					0	0	0.014410	0	0
WDR36	134430	broad.mit.edu	37	5	110428012	110428012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:110428012G>A	uc003kpd.2	+	1	143	c.26G>A	c.(25-27)CGG>CAG	p.R9Q	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	9					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		GGCAGTCTCCGGAAACGCGAT	0.587													51	47					0	0	0.014410	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111643176	111643176	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:111643176T>A	uc003kpv.1	-	2	385	c.111A>T	c.(109-111)AAA>AAT	p.K37N	EPB41L4A_uc003kpw.1_Missense_Mutation_p.K37N	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	37	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CAACGGAACCTTTCGTTGACT	0.378													13	42					0	0	0.013537	0	0
APC	324	broad.mit.edu	37	5	112154986	112154986	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:112154986C>T	uc010jby.2	+	10	1637	c.1257C>T	c.(1255-1257)ACC>ACT	p.T419T	APC_uc011cvt.1_Silent_p.T401T|APC_uc003kpz.3_Silent_p.T419T|APC_uc003kpy.3_Silent_p.T419T|APC_uc010jbz.2_Silent_p.T136T|APC_uc010jca.2_5'Flank	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	419	Leu-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity			large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		ACTGTGAAACCTGTTGGGAGT	0.463		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			13	48					0	0	0.001855	0	0
MCC	4163	broad.mit.edu	37	5	112403852	112403852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:112403852G>A	uc003kqj.3	-	11	1914	c.1384C>T	c.(1384-1386)CTC>TTC	p.L462F	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Missense_Mutation_p.L652F|MCC_uc011cwb.1_Missense_Mutation_p.L462F	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	462					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		AGCGCCAGGAGGAGTTCGTAG	0.617													9	26					0	0	0.006214	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769798	112769798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:112769798C>T	uc003kqm.2	-	1	931	c.739G>A	c.(739-741)GAC>AAC	p.D247N	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	247	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		TAGATGAGGTCCTTGCACTCG	0.602													20	24					0	0	0.014323	0	0
TRIM36	55521	broad.mit.edu	37	5	114469656	114469656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:114469656C>T	uc003kqs.2	-	8	1944	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	TRIM36_uc011cwc.1_Missense_Mutation_p.E467K|TRIM36_uc003kqt.2_Missense_Mutation_p.E324K	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	479	Fibronectin type-III.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		CTACTGTTTTCCAAGTCTTGA	0.378													17	63					0	0	0.006122	0	0
CDO1	1036	broad.mit.edu	37	5	115142174	115142174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:115142174C>T	uc003krg.2	-	4	756	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	149					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity			large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	ACAGCAGGTTCCGTATGGCTG	0.408													14	28					0	0	0.003163	0	0
DMXL1	1657	broad.mit.edu	37	5	118484798	118484798	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:118484798C>T	uc003ksd.2	+	18	3457	c.3276C>T	c.(3274-3276)GTC>GTT	p.V1092V	DMXL1_uc010jcl.1_Silent_p.V1092V	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1092										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		CATGTTGGGTCCTTGAGCAGA	0.373													51	71					0	0	0.014410	0	0
FAM170A	340069	broad.mit.edu	37	5	118969733	118969733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:118969733C>T	uc003ksm.2	+	3	500	c.290C>T	c.(289-291)CCC>CTC	p.P97L	FAM170A_uc003ksl.2_Missense_Mutation_p.P97L|FAM170A_uc003ksn.2_Missense_Mutation_p.P97L|FAM170A_uc003kso.2_Missense_Mutation_p.P50L	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	97						intracellular	zinc ion binding			skin(1)	1						GAGACTCCTCCCCGCTCACAA	0.483													26	26					0	0	0.004656	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759037	121759037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:121759037C>T	uc003ksw.1	+	4	811	c.605C>T	c.(604-606)TCC>TTC	p.S202F	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.S202F|SNCAIP_uc003ksx.1_Missense_Mutation_p.S249F|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.S202F	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	202					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AGCTCATCATCCAACATGGCA	0.463													15	73					0	0	0.004990	0	0
GRAMD3	65983	broad.mit.edu	37	5	125801165	125801165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:125801165C>T	uc003ktu.2	+	2	561	c.131C>T	c.(130-132)TCG>TTG	p.S44L	GRAMD3_uc011cwt.1_Missense_Mutation_p.S59L|GRAMD3_uc011cwv.1_Missense_Mutation_p.R38C|GRAMD3_uc011cww.1_5'UTR|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_5'UTR|GRAMD3_uc011cwz.1_Missense_Mutation_p.S28L|GRAMD3_uc011cwu.1_Missense_Mutation_p.S28L	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	44										central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		GCCTGCAGGTCGCCAACAGCC	0.507													12	56					0	0	0.013537	0	0
FBN2	2201	broad.mit.edu	37	5	127664510	127664510	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:127664510A>G	uc003kuu.2	-	34	4788	c.4349T>C	c.(4348-4350)GTT>GCT	p.V1450A	FBN2_uc003kuv.2_Missense_Mutation_p.V1417A	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1450	EGF-like 24; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ACACTCATCAACATCTGTGCA	0.423													19	11					0	0	0.010504	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302248	128302248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:128302248C>T	uc003kuy.2	+	2	814	c.418C>T	c.(418-420)CGC>TGC	p.R140C	SLC27A6_uc003kuz.2_Missense_Mutation_p.R140C	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	140					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		CACCAACATTCGCTCCAACTC	0.602													6	18					0	0	0.001168	0	0
SLC27A6	28965	broad.mit.edu	37	5	128320951	128320951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:128320951G>A	uc003kuy.2	+	3	1003	c.607G>A	c.(607-609)GAG>AAG	p.E203K	SLC27A6_uc003kuz.2_Missense_Mutation_p.E203K	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	203					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		CTCACCTGATGAGCCCGTGCC	0.438													11	44					0	0	0.001855	0	0
SLC27A6	28965	broad.mit.edu	37	5	128351643	128351643	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:128351643G>A	uc003kuy.2	+	6	1431	c.1035G>A	c.(1033-1035)TGG>TGA	p.W345*	SLC27A6_uc003kuz.2_Nonsense_Mutation_p.W345*	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	345					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GTGATGTATGGAGAGAATTTT	0.368													18	64					0	0	0.006122	0	0
ACSL6	23305	broad.mit.edu	37	5	131307271	131307271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:131307271C>T	uc010jdo.1	-	14	1414	c.1331G>A	c.(1330-1332)GGA>GAA	p.G444E	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.G469E|ACSL6_uc003kvy.1_Missense_Mutation_p.G469E|ACSL6_uc003kwb.2_Missense_Mutation_p.G434E|ACSL6_uc003kvz.1_Missense_Mutation_p.G369E|ACSL6_uc003kwa.1_Missense_Mutation_p.G455E|ACSL6_uc003kvw.1_Missense_Mutation_p.G90E|ACSL6_uc010jdn.1_Missense_Mutation_p.G459E	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	444	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCGGAGAAATCCCAGAACTGT	0.512													10	13					0	0	0.010729	0	0
RAD50	10111	broad.mit.edu	37	5	131940662	131940662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:131940662G>A	uc003kxi.2	+	16	3076	c.2689G>A	c.(2689-2691)GAA>AAA	p.E897K	RAD50_uc003kxh.2_Missense_Mutation_p.E758K	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	897	Potential.				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATTATCCACTGAAGTTCAGTC	0.284								Homologous_recombination					10	23					0	0	0.002450	0	0
FSTL4	23105	broad.mit.edu	37	5	132939627	132939627	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:132939627G>A	uc003kyn.1	-	2	266	c.48C>T	c.(46-48)TCC>TCT	p.S16S		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	16						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAGCCGGCAGGGAGGCTCCGA	0.532													32	42					0	0	0.010818	0	0
CDKL3	51265	broad.mit.edu	37	5	133644076	133644076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:133644076G>A	uc003kzf.3	-	9	1236	c.1117C>T	c.(1117-1119)CCA>TCA	p.P373S	CDKL3_uc011cxm.1_Missense_Mutation_p.P180S|CDKL3_uc011cxn.1_RNA|CDKL3_uc010jdw.2_5'UTR|CDKL3_uc011cxo.1_Missense_Mutation_p.P78S|CDKL3_uc011cxp.1_Missense_Mutation_p.P78S|CDKL3_uc011cxq.1_Missense_Mutation_p.P180S|CDKL3_uc003kzg.3_Missense_Mutation_p.P373S	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	cyclin-dependent kinase-like 3 isoform 1	373						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTCTTTTTTGGTTCTGAGATA	0.373													26	29					0	0	0.003954	0	0
CATSPER3	347732	broad.mit.edu	37	5	134344644	134344644	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:134344644C>T	uc003lag.2	+	5	857	c.789C>T	c.(787-789)TTC>TTT	p.F263F		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	263	Helical; Name=Segment S6; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCAACATGTTCGTGGGTGTGA	0.542													32	47					0	0	0.010818	0	0
CATSPER3	347732	broad.mit.edu	37	5	134347235	134347235	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:134347235C>T	uc003lag.2	+	8	1187	c.1119C>T	c.(1117-1119)ATC>ATT	p.I373I		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	373					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACTATGAGATCGTGCATGTGC	0.557													7	17					0	0	0.001984	0	0
TRPC7	57113	broad.mit.edu	37	5	135583173	135583173	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:135583173G>A	uc003lbn.1	-	6	1830	c.1827C>T	c.(1825-1827)AAC>AAT	p.N609N	TRPC7_uc010jef.1_Silent_p.N546N|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.N540N|TRPC7_uc010jei.1_Silent_p.N485N|TRPC7_uc010jej.1_Silent_p.N161N	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	610	Extracellular (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TAAACGCTGGGTTGTATTTGG	0.473													33	23					0	0	0.012213	0	0
TRPC7	57113	broad.mit.edu	37	5	135692364	135692364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:135692364G>A	uc003lbn.1	-	1	712	c.709C>T	c.(709-711)CCT>TCT	p.P237S	TRPC7_uc010jef.1_Missense_Mutation_p.P229S|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.P229S|TRPC7_uc010jei.1_Missense_Mutation_p.P229S|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	238	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTGAGGACAGGGTCTTCGCTG	0.562													5	23					0	0	0.001984	0	0
KDM3B	51780	broad.mit.edu	37	5	137761259	137761259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:137761259G>A	uc003lcy.1	+	17	4599	c.4399G>A	c.(4399-4401)GAG>AAG	p.E1467K	KDM3B_uc010jew.1_Missense_Mutation_p.E1123K|KDM3B_uc011cys.1_Missense_Mutation_p.E499K	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1467					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GGATGGTTTCGAGATCATATG	0.408													9	59					0	0	0.006214	0	0
ETF1	2107	broad.mit.edu	37	5	137844008	137844008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:137844008G>A	uc003ldc.3	-	11	1465	c.1300C>T	c.(1300-1302)CTT>TTT	p.L434F	ETF1_uc011cyv.1_Missense_Mutation_p.L420F|ETF1_uc010jex.2_RNA|ETF1_uc003ldd.3_Missense_Mutation_p.L401F	NM_004730	NP_004721	P62495	ERF1_HUMAN	eukaryotic translation termination factor 1	434					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation|regulation of translational termination	cytoplasm	protein binding|ribosome binding|translation release factor activity, codon specific			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TAGTCATCAAGGTCAAAAAAT	0.483													13	16					0	0	0.002450	0	0
NRG2	9542	broad.mit.edu	37	5	139251314	139251314	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:139251314G>A	uc003lex.1	-	4	1329	c.1104C>T	c.(1102-1104)CTC>CTT	p.L368L	NRG2_uc003lev.1_Silent_p.L368L|NRG2_uc003lew.1_Silent_p.L368L|NRG2_uc003ley.1_Silent_p.L368L	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	368	EGF-like.|Extracellular (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTTGCAGGAGAGCTGGTTGA	0.567													24	66					0	0	0.003954	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139866626	139866626	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:139866626C>T	uc003lfs.1	+	14	2350	c.2226C>T	c.(2224-2226)GCC>GCT	p.A742A	ANKHD1_uc003lfq.1_Silent_p.A761A|ANKHD1_uc003lfr.2_Silent_p.A742A|ANKHD1_uc003lft.1_Silent_p.A206A|ANKHD1_uc003lfu.1_Silent_p.A222A|ANKHD1_uc003lfv.1_Silent_p.A72A	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	742						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCTCCTGCCCTTTTAGGAG	0.393													9	49					0	0	0.004482	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166766	140166766	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140166766C>T	uc003lhb.2	+	1	891	c.891C>T	c.(889-891)TCC>TCT	p.S297S	PCDHA1_uc003lha.2_Silent_p.S297S|PCDHA1_uc003lgz.2_Silent_p.S297S	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	297	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTTGATTCCAGCTCAGGAG	0.368													13	55					0	0	0.001855	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167623	140167623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140167623G>A	uc003lhb.2	+	1	1748	c.1748G>A	c.(1747-1749)CGA>CAA	p.R583Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Missense_Mutation_p.R583Q	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	583	Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGTGCCGCGATTGGTGGGT	0.662													31	41					0	0	0.009535	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167914	140167914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140167914C>T	uc003lhb.2	+	1	2039	c.2039C>T	c.(2038-2040)TCG>TTG	p.S680L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Missense_Mutation_p.S680L	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	680	Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGCGTCTTCGCGGGCGTCG	0.657													15	48					0	0	0.003163	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175770	140175770	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140175770G>A	uc003lhd.2	+	1	1327	c.1221G>A	c.(1219-1221)TTG>TTA	p.L407L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L407L|PCDHA2_uc011czy.1_Silent_p.L407L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	407	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTACTCGTTGGTGCTGGACA	0.622													38	102					0	0	0.007835	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188434	140188434	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140188434C>T	uc003lhi.2	+	1	1763	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.F554F|PCDHA4_uc011daa.1_Silent_p.F554F	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	554	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTGTTCGTGCTGGACG	0.667													51	47					0	0	0.014410	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208807	140208807	+	Silent	SNP	C	T	T	rs147499647		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140208807C>T	uc003lho.2	+	1	1158	c.1131C>T	c.(1129-1131)CTC>CTT	p.L377L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.L377L|PCDHA6_uc011dab.1_Silent_p.L377L	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	377	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAACGACCTCGATTCAGGTG	0.512													34	120					0	0	0.006230	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229665	140229665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140229665G>A	uc003lhu.2	+	1	2309	c.1585G>A	c.(1585-1587)GAG>AAG	p.E529K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.E529K	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	529	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAGGAGCTGGAGCTGCTACA	0.677													56	84					0	0	0.014410	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237445	140237445	+	Silent	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140237445G>C	uc003lhx.2	+	1	1812	c.1812G>C	c.(1810-1812)GCG>GCC	p.A604A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Silent_p.A604A	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	604	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATACAACGCGTGGCTGTCGT	0.652													10	12					0	0	0.008291	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249015	140249015	+	Silent	SNP	C	T	T	rs73793507		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140249015C>T	uc003lia.2	+	1	1185	c.327C>T	c.(325-327)ATC>ATT	p.I109I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.I109I	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	109	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGGTGATCGTGGACAGGC	0.547													40	176					0	0	0.007835	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250440	140250440	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140250440G>A	uc003lia.2	+	1	2610	c.1752G>A	c.(1750-1752)GTG>GTA	p.V584V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.V584V	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	584	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGGTCGGTGGGTGCGGGCC	0.667													24	98					0	0	0.003954	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308012	140308012	+	Missense_Mutation	SNP	C	T	T	rs137957181		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140308012C>T	uc003lih.2	+	1	1711	c.1535C>T	c.(1534-1536)TCC>TTC	p.S512F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.S512F	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	512	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAAAACTTCCTTTGACTTT	0.493													29	90					0	0	0.005443	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516390	140516390	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140516390C>T	uc003liq.2	+	1	1591	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	458	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGAGAGA	0.617													62	82					0	0	0.014410	0	0
PCDHB6	56130	broad.mit.edu	37	5	140529943	140529943	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140529943G>A	uc003lir.2	+	1	105	c.105G>A	c.(103-105)TTG>TTA	p.L35L	PCDHB6_uc011dah.1_Intron	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	35	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTCCGTATTGGAGGAGACAG	0.493													21	54					0	0	0.008871	0	0
PCDHB6	56130	broad.mit.edu	37	5	140529993	140529993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140529993G>A	uc003lir.2	+	1	155	c.155G>A	c.(154-156)GGA>GAA	p.G52E	PCDHB6_uc011dah.1_Intron	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	52	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGGACCTGGGACTGAGGGTG	0.512													41	53					0	0	0.009718	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531273	140531273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140531273G>A	uc003lir.2	+	1	1435	c.1435G>A	c.(1435-1437)GGC>AGC	p.G479S	PCDHB6_uc011dah.1_Missense_Mutation_p.G343S	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	479	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGAGACTCAGGCATCAACGC	0.652													71	74					0	0	0.014410	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553181	140553181	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140553181C>T	uc003lit.2	+	1	939	c.765C>T	c.(763-765)AGC>AGT	p.S255S		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	255	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGAAAATAGCCCCGTTGGTT	0.507													14	49					0	0	0.002450	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558802	140558802	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140558802C>A	uc011dai.1	+	1	1373	c.1187C>A	c.(1186-1188)TCT>TAT	p.S396Y	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	396	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCTGAAATCTTCTGTGGGG	0.453													25	147					7.87624e-14	8.71098e-14	0.002780	1	0
PCDHB9	56127	broad.mit.edu	37	5	140568571	140568571	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140568571C>T	uc003liw.1	+	3	1680	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	560	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCGCCCTTCGTGCTGTACC	0.716													18	28					0	0	0.007291	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568927	140568928	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140568927_140568928CC>TA	uc003liw.1	+	3	2036_2037	c.2036_2037CC>TA	c.(2035-2037)GCC>GTA	p.A679V		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	679	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGGCCCCGGCCCAGGCCCAGG	0.703													29	101					0	0	0.004672	0	0
PCDHB9	56127	broad.mit.edu	37	5	140569225	140569225	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140569225G>A	uc003liw.1	+	3	2334	c.2334G>A	c.(2332-2334)AGG>AGA	p.R778R	PCDHB10_uc003lix.2_5'Flank	NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	778	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCCCCATAGGGGTGGGAAAG	0.443													18	90					0	0	0.007413	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572455	140572455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140572455G>A	uc003lix.2	+	1	504	c.330G>A	c.(328-330)ATG>ATA	p.M110I		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	110	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATTTTAATGGATGATCCCT	0.428													8	33					0	0	0.008291	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589549	140589549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140589549C>T	uc003liz.2	+	1	1259	c.1070C>T	c.(1069-1071)CCA>CTA	p.P357L	PCDHB12_uc011dak.1_Missense_Mutation_p.P20L	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	357	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTCCAATCCCAGAAAACACT	0.463													24	21					0	0	0.003330	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603430	140603430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140603430G>A	uc003ljb.2	+	1	353	c.353G>A	c.(352-354)CGG>CAG	p.R118Q	PCDHB14_uc011dal.1_Intron	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	118	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGTTTTTTCGGTTTGAGCTG	0.433													24	84					0	0	0.003330	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724380	140724380	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140724380G>A	uc003ljm.1	+	1	780	c.780G>A	c.(778-780)CGG>CGA	p.R260R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.R20R|PCDHGA3_uc011dap.1_Silent_p.R260R	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	260	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGTACCCGGCTGCTCACGG	0.483													20	31					0	0	0.003954	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725660	140725660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140725660C>T	uc003ljm.1	+	1	2060	c.2060C>T	c.(2059-2061)TCG>TTG	p.S687L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.S447L|PCDHGA3_uc011dap.1_Missense_Mutation_p.S687L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	687	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCAACGATTCGGACCTCACT	0.687													35	48					0	0	0.014410	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730451	140730451	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140730451C>T	uc003ljo.1	+	1	624	c.624C>T	c.(622-624)ATC>ATT	p.I208I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.I208I	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	208	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCGCTTAATCCTGACTGCCA	0.507													13	67					0	0	0.013537	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750236	140750236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140750236G>A	uc003ljw.1	+	1	275	c.275G>A	c.(274-276)CGA>CAA	p.R92Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.R92Q	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	92	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTATAGACCGAGAGGAGATT	0.443													58	221					0	0	0.014410	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750280	140750280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140750280G>A	uc003ljw.1	+	1	319	c.319G>A	c.(319-321)GAA>AAA	p.E107K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.E107K	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	107	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTGGAATTTGAAATGGTTGC	0.433													47	168					0	0	0.014410	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750458	140750458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140750458C>T	uc003ljw.1	+	1	497	c.497C>T	c.(496-498)TCG>TTG	p.S166L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.S166L	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	166	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTGTCAATTCGCTGCAGCAG	0.502													48	186					0	0	0.014410	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140753701	140753701	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140753701C>T	uc003ljy.1	+	1	51	c.51C>T	c.(49-51)CTC>CTT	p.L17L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.L17L	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	17					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGCTCCTCACGCTCCTGG	0.597													9	10					0	0	0.004482	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755656	140755656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140755656C>T	uc003ljy.1	+	1	2006	c.2006C>T	c.(2005-2007)CCC>CTC	p.P669L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P669L	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	669	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACAGGATCCCCGACATCCTG	0.692													28	32					0	0	0.008740	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764713	140764713	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140764713C>T	uc003lka.1	+	1	2247	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGB4_uc003lkc.1_5'Flank|PCDHGA7_uc003ljz.1_Silent_p.F749F|PCDHGB4_uc011dav.1_5'Flank	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGCTTTCCTGCAGACCT	0.607													28	37					0	0	0.007291	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772607	140772607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140772607C>T	uc003lkd.1	+	1	1125	c.227C>T	c.(226-228)GCT>GTT	p.A76V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.A76V	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	76	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCTCTTTGCTCTGAACCCG	0.602													22	25					0	0	0.003330	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784004	140784004	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140784004C>T	uc003lkh.1	+	1	1485	c.1485C>T	c.(1483-1485)ACC>ACT	p.T495T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.T495T	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	495	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGAGGATACCATCCAAGGGT	0.458													27	36					0	0	0.004656	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140795153	140795153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140795153C>T	uc003lkl.1	+	1	2411	c.2411C>T	c.(2410-2412)CCT>CTT	p.P804L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.P804L|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	804	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGAAGTTTCCTATAGAGGAT	0.393													7	33					0	0	0.001984	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140858107	140858107	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140858107C>T	uc003lkv.1	+	1	2539	c.2424C>T	c.(2422-2424)CCC>CCT	p.P808P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Silent_p.P808P|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	808	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCCCCTCCCGGACAGGTAA	0.517											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	9					0	0	0.001984	0	0
DIAPH1	1729	broad.mit.edu	37	5	140896445	140896446	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:140896445_140896446GG>AA	uc003llb.3	-	29	3932_3933	c.3791_3792CC>TT	c.(3790-3792)GCC>GTT	p.A1264V	DIAPH1_uc011dbd.1_3'UTR|DIAPH1_uc003llc.3_Missense_Mutation_p.A1255V	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	1264					regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAACTCCTTGGCTTCCTCAAG	0.579													20	27					0	0	0.004672	0	0
HDAC3	8841	broad.mit.edu	37	5	141009672	141009672	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:141009672A>G	uc003llf.2	-	4	368	c.302T>C	c.(301-303)TTT>TCT	p.F101S	HDAC3_uc003lle.1_Missense_Mutation_p.F44S|HDAC3_uc010jgd.1_Intron|HDAC3_uc010jge.1_Intron	NM_003883	NP_003874	O15379	HDAC3_HUMAN	histone deacetylase 3	101	Histone deacetylase.				anti-apoptosis|cellular lipid metabolic process|negative regulation of cell cycle|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|spindle assembly|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|spindle microtubule|transcriptional repressor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription corepressor activity|transcription factor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Vorinostat(DB02546)	GCAGAACTCAAAGAGCCCGGG	0.557													45	52					0	0	0.014410	0	0
KCTD16	57528	broad.mit.edu	37	5	143586587	143586587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:143586587G>A	uc003lnm.1	+	3	939	c.310G>A	c.(310-312)GGA>AGA	p.G104R	KCTD16_uc003lnn.1_Missense_Mutation_p.G104R	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	104						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			TCCAGAAAAAGGAAGACTGAA	0.473													11	38					0	0	0.001855	0	0
PLAC8L1	153770	broad.mit.edu	37	5	145464078	145464078	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:145464078G>A	uc003lnv.2	-	4	523	c.451C>T	c.(451-453)CAG>TAG	p.Q151*	PLAC8L1_uc011dbp.1_RNA	NM_001029869	NP_001025040	A1L4L8	PL8L1_HUMAN	PLAC8-like 1	151											0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGGGCCACCTGGCAGATGGAA	0.527													43	89					0	0	0.007835	0	0
LARS	51520	broad.mit.edu	37	5	145524223	145524223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:145524223G>A	uc003lnx.1	-	16	1791	c.1553C>T	c.(1552-1554)TCG>TTG	p.S518L	LARS_uc011dbq.1_Missense_Mutation_p.S472L|LARS_uc011dbr.1_Missense_Mutation_p.S464L|LARS_uc011dbs.1_Missense_Mutation_p.S491L	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	518					leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	TTCATCTGACGACCTGGACAT	0.373													22	35					0	0	0.003954	0	0
SPINK9	643394	broad.mit.edu	37	5	147716007	147716007	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:147716007G>A	uc003lpe.1	+	2	133	c.78G>A	c.(76-78)ACG>ACA	p.T26T	uc003lpb.1_Intron	NM_001040433	NP_001035523	Q5DT21	ISK9_HUMAN	serine peptidase inhibitor, Kazal type 9	26	Kazal-like.					extracellular region	protein binding|serine-type endopeptidase inhibitor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAAACAGACGAAACAGATGG	0.299													24	91					0	0	0.005443	0	0
HTR4	3360	broad.mit.edu	37	5	147889316	147889316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:147889316G>A	uc003lpn.2	-	6	943	c.779C>T	c.(778-780)ACC>ATC	p.T260I	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.T260I|HTR4_uc003lpj.1_Missense_Mutation_p.T260I|HTR4_uc003lpk.2_Missense_Mutation_p.T260I|HTR4_uc011dby.1_Missense_Mutation_p.T260I|HTR4_uc003lpl.2_Missense_Mutation_p.T274I|HTR4_uc003lpm.2_Missense_Mutation_p.T260I|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.T260I	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	260	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	GATGCACAGGGTCTTGGCTGC	0.547													29	33					0	0	0.009535	0	0
GRPEL2	134266	broad.mit.edu	37	5	148727972	148727972	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:148727972A>T	uc003lqj.2	+	2	341	c.215A>T	c.(214-216)GAA>GTA	p.E72V	GRPEL2_uc011dca.1_Missense_Mutation_p.E72V	NM_152407	NP_689620	Q8TAA5	GRPE2_HUMAN	GrpE-like 2, mitochondrial precursor	72					protein folding	mitochondrial matrix	adenyl-nucleotide exchange factor activity|chaperone binding|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGAGAAAGAAGTCCAAGAT	0.398													26	24					0	0	0.003954	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149212709	149212709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:149212709C>T	uc003lrc.2	+	5	1115	c.1073C>T	c.(1072-1074)CCC>CTC	p.P358L	PPARGC1B_uc003lrb.1_Missense_Mutation_p.P358L|PPARGC1B_uc003lrd.2_Missense_Mutation_p.P319L|PPARGC1B_uc003lrf.2_Missense_Mutation_p.P337L|PPARGC1B_uc003lre.1_Missense_Mutation_p.P337L	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	358					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GTCAGCAAACCCTACCGTCTG	0.632													18	52					0	0	0.006122	0	0
PDE6A	5145	broad.mit.edu	37	5	149263002	149263002	+	Missense_Mutation	SNP	C	T	T	rs148637474		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:149263002C>T	uc003lrg.3	-	17	2245	c.2125G>A	c.(2125-2127)GAA>AAA	p.E709K		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	709					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			ATAACGATTTCCTTCCGTGTC	0.483													11	13					0	0	0.010729	0	0
PDE6A	5145	broad.mit.edu	37	5	149276015	149276015	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:149276015G>A	uc003lrg.3	-	12	1644	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	508					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GTAAGTCACTGAAGTGAAATT	0.393													15	41					0	0	0.002450	0	0
SLC26A2	1836	broad.mit.edu	37	5	149359901	149359901	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:149359901T>A	uc003lrh.2	+	3	1013	c.745T>A	c.(745-747)TCA>ACA	p.S249T		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	249	Helical; (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TGTCTACCTCTCAGATGCCTT	0.423													27	124					0	0	0.010818	0	0
CSF1R	1436	broad.mit.edu	37	5	149456941	149456941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:149456941G>A	uc003lrl.2	-	5	982	c.787C>T	c.(787-789)CTC>TTC	p.L263F	CSF1R_uc011dcd.1_Missense_Mutation_p.L115F|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.L263F|CSF1R_uc011dce.1_Missense_Mutation_p.L263F|CSF1R_uc011dcf.1_Missense_Mutation_p.L263F	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	263	Extracellular (Potential).|Ig-like C2-type 3.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	TCGAGGTTGAGGGTCAGGACT	0.488													39	53					0	0	0.009718	0	0
SYNPO	11346	broad.mit.edu	37	5	150027812	150027812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:150027812C>T	uc003lsn.2	+	3	1081	c.707C>T	c.(706-708)CCC>CTC	p.P236L	SYNPO_uc003lso.3_5'UTR|SYNPO_uc003lsp.2_5'UTR	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	236					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCCAGAGCCCCGACAGAGGG	0.672													9	17					0	0	0.004482	0	0
LOC134466	134466	broad.mit.edu	37	5	150322137	150322137	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:150322137C>T	uc003lsz.1	-	2	266	c.117G>A	c.(115-117)GAG>GAA	p.E39E	LOC134466_uc003ltb.2_RNA|LOC134466_uc003lta.2_RNA					RecName: Full=Putative KRAB domain-containing protein LOC134466;												0						GGCTATAGATCTCCAGCATCA	0.522													10	32					0	0	0.008291	0	0
SLC36A3	285641	broad.mit.edu	37	5	150682794	150682794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:150682794C>T	uc003ltw.2	-	1	541	c.122G>A	c.(121-123)GGA>GAA	p.G41E	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltx.2_Missense_Mutation_p.G41E	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	41	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTACGATAGTCCAGCTTCTCC	0.512													6	41					0	0	0.001984	0	0
FAT2	2196	broad.mit.edu	37	5	150908800	150908800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:150908800G>A	uc003lue.3	-	14	9978	c.9965C>T	c.(9964-9966)CCC>CTC	p.P3322L	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.P15L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3322	Cadherin 30.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGATCTTGGGGGAATTGGGG	0.522													41	49					0	0	0.010771	0	0
NMUR2	56923	broad.mit.edu	37	5	151777675	151777675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:151777675C>T	uc003luv.2	-	2	923	c.757G>A	c.(757-759)GAA>AAA	p.E253K		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	253	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GCATTCCCTTCATCTGCCTCA	0.363													22	37					0	0	0.002780	0	0
GRIA1	2890	broad.mit.edu	37	5	153085405	153085405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:153085405C>T	uc003lva.3	+	11	1966	c.1601C>T	c.(1600-1602)CCT>CTT	p.P534L	GRIA1_uc003luy.3_Missense_Mutation_p.P534L|GRIA1_uc003luz.3_Missense_Mutation_p.P439L|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.P454L|GRIA1_uc011dcx.1_Missense_Mutation_p.P465L|GRIA1_uc011dcy.1_Missense_Mutation_p.P544L|GRIA1_uc011dcz.1_Missense_Mutation_p.P544L|GRIA1_uc010jia.1_Missense_Mutation_p.P514L	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	534	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TTCCTTGATCCTTTGGCTTAT	0.433													62	61					0	0	0.014410	0	0
GEMIN5	25929	broad.mit.edu	37	5	154278121	154278121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:154278121G>A	uc003lvx.3	-	23	3307	c.3224C>T	c.(3223-3225)GCT>GTT	p.A1075V	GEMIN5_uc011ddk.1_Missense_Mutation_p.A1074V	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1075					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TACGATGGCAGCCAACTCTGC	0.532													33	39					0	0	0.013726	0	0
FAM71B	153745	broad.mit.edu	37	5	156590459	156590459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:156590459C>T	uc003lwn.2	-	2	917	c.817G>A	c.(817-819)GGA>AGA	p.G273R		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	273	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTTGCTGTTCCTGCCACTGCC	0.582													55	156					0	0	0.014410	0	0
ITK	3702	broad.mit.edu	37	5	156608032	156608032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:156608032C>T	uc003lwo.1	+	1	126	c.44C>T	c.(43-45)TCC>TTC	p.S15F		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	15	PH.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATCAAGAAATCCCAACAAAAG	0.448			T	SYK	peripheral T-cell lymphoma								53	225					0	0	0.014410	0	0
ITK	3702	broad.mit.edu	37	5	156635902	156635902	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:156635902G>A	uc003lwo.1	+	2	223	c.141G>A	c.(139-141)AAG>AAA	p.K47K		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	47	PH.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCCCACAGAAGAAGCGCACGC	0.433			T	SYK	peripheral T-cell lymphoma								67	111					0	0	0.014410	0	0
ITK	3702	broad.mit.edu	37	5	156636002	156636002	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:156636002C>T	uc003lwo.1	+	2	323	c.241C>T	c.(241-243)CAG>TAG	p.Q81*		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	81	PH.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATACCCGTTTCAGGTAAGTCC	0.388			T	SYK	peripheral T-cell lymphoma								85	97					0	0	0.014410	0	0
ITK	3702	broad.mit.edu	37	5	156641321	156641321	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:156641321A>G	uc003lwo.1	+	4	527	c.445A>G	c.(445-447)ACC>GCC	p.T149A		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	149	Btk-type.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATATGATCCAACCAAGAATGG	0.423			T	SYK	peripheral T-cell lymphoma								76	227					0	0	0.014410	0	0
ADAM19	8728	broad.mit.edu	37	5	156908821	156908821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:156908821G>A	uc003lwz.2	-	22	2745	c.2681C>T	c.(2680-2682)CCT>CTT	p.P894L	ADAM19_uc003lww.1_Intron|ADAM19_uc003lwy.2_Missense_Mutation_p.P493L|ADAM19_uc011ddr.1_Missense_Mutation_p.P825L	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	894	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGCTGCCAGAGGCCGGGACTG	0.662													5	3					0	0	0.001168	0	0
RNF145	153830	broad.mit.edu	37	5	158588447	158588447	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:158588447T>A	uc003lxp.2	-	10	1766	c.1453A>T	c.(1453-1455)ATG>TTG	p.M485L	RNF145_uc011ddy.1_Missense_Mutation_p.M499L|RNF145_uc003lxo.1_Missense_Mutation_p.M513L|RNF145_uc011ddz.1_Missense_Mutation_p.M502L|RNF145_uc010jiq.1_Missense_Mutation_p.M515L	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	485	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATTGAGCCCATCACTGTCCAT	0.512													19	43					0	0	0.007413	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159776189	159776189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:159776189G>A	uc003lyd.2	-	3	983	c.979C>T	c.(979-981)CCC>TCC	p.P327S		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	282	C1q.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACCTCGTTGGGGTCATCCTGG	0.557													45	47					0	0	0.014410	0	0
ATP10B	23120	broad.mit.edu	37	5	159996682	159996682	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:159996682G>A	uc003lym.1	-	25	4606	c.3759C>T	c.(3757-3759)TTC>TTT	p.F1253F	ATP10B_uc010jit.1_Silent_p.F503F	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1253	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGACTCCGTGGAAAATGGTCT	0.468													7	39					0	0	0.001984	0	0
ATP10B	23120	broad.mit.edu	37	5	160049461	160049461	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:160049461G>A	uc003lym.1	-	14	2599	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	ATP10B_uc010jit.1_5'Flank|ATP10B_uc003lyn.2_Silent_p.F142F	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	584	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTAAGGCAAGGAAGAAATCAG	0.572													10	28					0	0	0.006214	0	0
ATP10B	23120	broad.mit.edu	37	5	160063273	160063273	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:160063273G>A	uc003lym.1	-	11	1891	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	ATP10B_uc003lyp.2_Silent_p.F348F|ATP10B_uc011deg.1_Silent_p.F392F|ATP10B_uc003lyn.2_5'Flank|ATP10B_uc003lyo.2_Silent_p.F320F	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	348	Extracellular (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTGGCACATCGAAGGGAGGGT	0.522													30	37					0	0	0.008361	0	0
ODZ2	57451	broad.mit.edu	37	5	167674649	167674649	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:167674649G>A	uc010jjd.2	+	27	6678	c.6678G>A	c.(6676-6678)CTG>CTA	p.L2226L	ODZ2_uc003lzr.3_Silent_p.L1996L|ODZ2_uc003lzt.3_Silent_p.L1599L|ODZ2_uc010jje.2_Silent_p.L1490L	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCCACTTACTGAACCCAGGCA	0.572													13	15					0	0	0.001855	0	0
PANK3	79646	broad.mit.edu	37	5	167990990	167990990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:167990990G>A	uc003lzz.1	-	4	1016	c.716C>T	c.(715-717)TCC>TTC	p.S239F		NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	239					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		ATCACCTTTGGATGCCATTTC	0.423													40	156					0	0	0.009718	0	0
SLIT3	6586	broad.mit.edu	37	5	168093533	168093533	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:168093533G>A	uc003mab.2	-	36	4918	c.4498C>T	c.(4498-4500)CAG>TAG	p.Q1500*	SLIT3_uc010jjg.2_Nonsense_Mutation_p.Q1507*	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1500	CTCK.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCGTGCACTGGAAGACGTAT	0.637													12	16					0	0	0.001855	0	0
FOXI1	2299	broad.mit.edu	37	5	169532974	169532974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:169532974G>A	uc003mai.3	+	1	58	c.13G>A	c.(13-15)GAC>AAC	p.D5N	FOXI1_uc003maj.3_Missense_Mutation_p.D5N	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	5					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGCTCCTTCGACCTGCCGGC	0.697									Pendred_syndrome				7	4					0	0	0.001984	0	0
FOXI1	2299	broad.mit.edu	37	5	169535193	169535193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:169535193C>T	uc003mai.3	+	2	760	c.715C>T	c.(715-717)CCG>TCG	p.P239S	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	239					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGCAGTCTCCCGGTGGACAG	0.572									Pendred_syndrome				24	37					0	0	0.002780	0	0
GABRP	2568	broad.mit.edu	37	5	170222365	170222365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:170222365G>A	uc003mau.2	+	5	592	c.394G>A	c.(394-396)GAA>AAA	p.E132K	GABRP_uc011dev.1_Missense_Mutation_p.E132K	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	132	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTTCCTCCATGAAGTCACTGT	0.562													37	57					0	0	0.006230	0	0
SFXN1	94081	broad.mit.edu	37	5	174936039	174936039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:174936039G>A	uc003mda.2	+	3	307	c.169G>A	c.(169-171)GGA>AGA	p.G57R	SFXN1_uc003mdb.1_Intron	NM_022754	NP_073591	Q9H9B4	SFXN1_HUMAN	sideroflexin 1	57					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity|protein binding			ovary(1)	1	all_cancers(89;0.00922)|Renal(175;0.000269)|Lung NSC(126;0.00515)|all_lung(126;0.00873)	Medulloblastoma(196;0.0399)|all_neural(177;0.0663)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			TCTTAGGCAAGGAATTGTTCC	0.373													40	45					0	0	0.006230	0	0
SNCB	6620	broad.mit.edu	37	5	176053763	176053763	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:176053763C>T	uc003mep.2	-	4	565	c.122_splice	c.e4-1	p.G41_splice	SNCB_uc003meq.2_Splice_Site_p.G41_splice|SNCB_uc010jke.1_Splice_Site_p.G41_splice	NM_001001502	NP_001001502	Q16143	SYUB_HUMAN	beta-synuclein								calcium ion binding|phospholipase inhibitor activity			ovary(1)	1	all_cancers(89;0.00222)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTCTTGCTTCCTGCAGGGAGA	0.577													25	26					0	0	0.005443	0	0
NSD1	64324	broad.mit.edu	37	5	176696747	176696747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:176696747G>A	uc003mfr.3	+	16	5586	c.5448G>A	c.(5446-5448)ATG>ATA	p.M1816I	NSD1_uc003mft.3_Missense_Mutation_p.M1547I|NSD1_uc003mfs.1_Missense_Mutation_p.M1713I|NSD1_uc011dfx.1_Missense_Mutation_p.M1464I	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1816	PWWP 2.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TCCCTTACATGGAGGGTGACG	0.443			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			12	72					0	0	0.013537	0	0
LMAN2	10960	broad.mit.edu	37	5	176764494	176764494	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:176764494T>G	uc003mge.2	-	5	782	c.545A>C	c.(544-546)AAC>ACC	p.N182T	LMAN2_uc003mgd.2_Missense_Mutation_p.N182T	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor	182	Lumenal (Potential).|L-type lectin-like.				protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGAGCCATTGTTCACCATCAC	0.642													5	31					0	0	0.000602	0	0
GRM6	2916	broad.mit.edu	37	5	178413621	178413621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:178413621C>T	uc003mjr.2	-	8	1813	c.1634G>A	c.(1633-1635)GGG>GAG	p.G545E	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Missense_Mutation_p.G128E|GRM6_uc003mjs.1_Missense_Mutation_p.G165E	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	545	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GAAGCGGTACCCGTCACAGGC	0.687													6	36					0	0	0.001168	0	0
ZNF354C	30832	broad.mit.edu	37	5	178506099	178506099	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:178506099G>A	uc003mju.2	+	5	781	c.666G>A	c.(664-666)GGG>GGA	p.G222G		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	222	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		ATGAATGTGGGAAGAGCTTCA	0.363													12	30					0	0	0.010729	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178548698	178548698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:178548698G>A	uc003mjw.2	-	21	3142	c.3142C>T	c.(3142-3144)CCG>TCG	p.P1048S		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1048					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TCGGGGTCCGGGCGGGACAGC	0.622													60	215					0	0	0.014410	0	0
MAML1	9794	broad.mit.edu	37	5	179201801	179201801	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:179201801C>T	uc003mkm.2	+	5	3237	c.2974C>T	c.(2974-2976)CTG>TTG	p.L992L	MAML1_uc003mkn.1_Intron	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	992					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACACACCGATCTGATCGACTC	0.557													19	71					0	0	0.007413	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179548090	179548090	+	Silent	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:179548090C>G	uc003mlq.2	-	6	1071	c.774G>C	c.(772-774)CTG>CTC	p.L258L	RASGEF1C_uc003mlr.2_Silent_p.L258L|RASGEF1C_uc003mlp.3_Silent_p.L107L	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	258	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCAGGTAGCACAGCCTGTTGA	0.582													9	42					0	0	0.006214	0	0
CNOT6	57472	broad.mit.edu	37	5	179977003	179977003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:179977003C>T	uc003mlx.2	+	3	534	c.185C>T	c.(184-186)TCC>TTC	p.S62F	CNOT6_uc010jld.2_Missense_Mutation_p.S62F|CNOT6_uc010jle.2_Missense_Mutation_p.S62F	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	62	LRR 1.				nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		AGTGACAATTCCCTGTCCCGA	0.423													64	65					0	0	0.014410	0	0
FLT4	2324	broad.mit.edu	37	5	180043463	180043463	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:180043463C>T	uc003mma.3	-	23	3202	c.3123G>A	c.(3121-3123)CGG>CGA	p.R1041R	FLT4_uc003mlz.3_Silent_p.R1041R	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1041	Cytoplasmic (Potential).|Protein kinase.		R -> P (in LMPH1A; loss of kinase activity).		positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCAGAATGTTCCGAGCAGCCA	0.617									Congenital_Hereditary_Lymphedema				18	22					0	0	0.012319	0	0
DUSP22	56940	broad.mit.edu	37	6	345884	345884	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:345884C>T	uc003msx.2	+	5	658	c.219C>T	c.(217-219)TTC>TTT	p.F73F	DUSP22_uc011dhn.1_Silent_p.F73F|DUSP22_uc003msy.1_Silent_p.F30F	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	73	Tyrosine-protein phosphatase.				apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GTATTAAATTCATTCACGAGT	0.418													13	61					0	0	0.002450	0	0
GMDS	2762	broad.mit.edu	37	6	1961196	1961196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:1961196G>A	uc003mtq.2	-	5	540	c.350C>T	c.(349-351)TCC>TTC	p.S117F		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	117					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		GAGGTCAAAGGAAATCTGGAA	0.468													10	15					0	0	0.006214	0	0
C6orf195	154386	broad.mit.edu	37	6	2623929	2623929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:2623929G>A	uc003mtw.2	-	3	1113	c.128C>T	c.(127-129)CCC>CTC	p.P43L		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	43											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				CCTTAGAGCGGGCCTGGCTCC	0.617													34	49					0	0	0.012213	0	0
F13A1	2162	broad.mit.edu	37	6	6266838	6266838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:6266838C>T	uc003mwv.2	-	4	647	c.524G>A	c.(523-525)CGA>CAA	p.R175Q	F13A1_uc011dib.1_Missense_Mutation_p.R112Q	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	175					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTCTGGGTTTCGACTGGTTCG	0.428													37	49					0	0	0.005524	0	0
DSP	1832	broad.mit.edu	37	6	7558481	7558481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:7558481G>A	uc003mxp.1	+	3	685	c.406G>A	c.(406-408)GAT>AAT	p.D136N	DSP_uc003mxq.1_Missense_Mutation_p.D136N	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	136	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CCAGCCCTGTGATGCTTACCA	0.502													10	21					0	0	0.006214	0	0
SNRNP48	154007	broad.mit.edu	37	6	7602873	7602873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:7602873C>T	uc003mxr.2	+	6	672	c.613C>T	c.(613-615)CCA>TCA	p.P205S	SNRNP48_uc003mxs.2_RNA|SNRNP48_uc003mxt.1_5'UTR	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	205					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						TCGAAAAAGTCCAAAATCCTA	0.303													15	31					0	0	0.004007	0	0
GCM2	9247	broad.mit.edu	37	6	10874607	10874607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:10874607G>A	uc003mzn.3	-	5	1214	c.1142C>T	c.(1141-1143)ACC>ATC	p.T381I	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	381					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GGTGATCACGGTTTGTAGGGC	0.562													70	137					0	0	0.014410	0	0
SYCP2L	221711	broad.mit.edu	37	6	10930683	10930683	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:10930683G>A	uc003mzo.2	+	19	1865	c.1569G>A	c.(1567-1569)CAG>CAA	p.Q523Q	SYCP2L_uc011din.1_3'UTR|SYCP2L_uc010jow.2_Silent_p.Q143Q	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	523						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			CCAGTAACCAGAAAAAGAAAT	0.348													24	32					0	0	0.003330	0	0
ELOVL2	54898	broad.mit.edu	37	6	10990062	10990062	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:10990062G>A	uc003mzp.3	-	7	800	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	213	Helical; (Potential).				fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			TGGTGAGCACGAACTGCACCT	0.547													22	43					0	0	0.003330	0	0
PHACTR1	221692	broad.mit.edu	37	6	13228132	13228133	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:13228132_13228133GG>AA	uc010jpc.2	+	9	1403_1404	c.1071_1072GG>AA	c.(1069-1074)ATGGGC>ATAAGC	p.357_358MG>IS	PHACTR1_uc011dir.1_Missense_Mutation_p.426_427MG>IS|PHACTR1_uc003nag.1_Missense_Mutation_p.357_358MG>IS|PHACTR1_uc003nah.1_Missense_Mutation_p.357_358MG>IS	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	357_358						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			CAGGACCTATGGGCCTTCCAGA	0.485													252	466					0	0	0.004672	0	0
KIF13A	63971	broad.mit.edu	37	6	17850608	17850608	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:17850608G>A	uc003ncg.3	-	8	768	c.663C>T	c.(661-663)TCC>TCT	p.S221S	KIF13A_uc003ncf.2_Silent_p.S221S|KIF13A_uc003nch.3_Silent_p.S221S|KIF13A_uc003nci.3_Silent_p.S221S	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	221	Kinesin-motor.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			ACACAGCATGGGAGCGGCTGC	0.473													18	30					0	0	0.004990	0	0
CDKAL1	54901	broad.mit.edu	37	6	20758841	20758841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:20758841C>T	uc003ndc.1	+	7	658	c.484C>T	c.(484-486)CGT>TGT	p.R162C	CDKAL1_uc003ndd.1_Missense_Mutation_p.R162C|CDKAL1_uc003nde.1_Missense_Mutation_p.R92C	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	162	MTTase N-terminal.				RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			GCAGATAGATCGTGTGGTAGA	0.328													73	314					0	0	0.014410	0	0
CDKAL1	54901	broad.mit.edu	37	6	21108659	21108659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:21108659C>T	uc003ndc.1	+	13	1438	c.1264C>T	c.(1264-1266)CGG>TGG	p.R422W	CDKAL1_uc003ndd.1_Missense_Mutation_p.R422W|CDKAL1_uc003nde.1_Intron|CDKAL1_uc003ndf.1_Missense_Mutation_p.R18W	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	422					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			AGATCTTTCTCGGGTGTTTCA	0.294													139	237					0	0	0.014410	0	0
FAM65B	9750	broad.mit.edu	37	6	24850074	24850074	+	Silent	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:24850074G>T	uc003neo.1	-	11	1079	c.903C>A	c.(901-903)ATC>ATA	p.I301I	FAM65B_uc011djs.1_Silent_p.I330I|FAM65B_uc011dju.1_Silent_p.I335I|FAM65B_uc003nep.2_Silent_p.I301I|FAM65B_uc011djt.1_Silent_p.I301I	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	301					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						CAAGGTCATTGATGTCGACAG	0.473													101	193					5.50669e-55	6.12446e-55	0.014410	1	0
Unknown	0	broad.mit.edu	37	6	25261489	25261489	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:25261489G>A	uc003nex.3	-	1		c.147C>T								Homo sapiens cDNA clone IMAGE:5297808.																		AAGGCAAAAAGGAAAGGCACT	0.333													6	5					0	0	0.001168	0	0
SCGN	10590	broad.mit.edu	37	6	25665236	25665236	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:25665236G>A	uc003nfb.2	+	4	515	c.312G>A	c.(310-312)CTG>CTA	p.L104L	SCGN_uc010jpz.2_Nonsense_Mutation_p.W14*	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	104						extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						AAAACCCACTGGACAGCAGCG	0.488													18	53					0	0	0.007413	0	0
SLC17A1	6568	broad.mit.edu	37	6	25826732	25826732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:25826732C>T	uc003nfh.3	-	3	280	c.164G>A	c.(163-165)GGT>GAT	p.G55D	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.G53D|SLC17A1_uc010jqc.1_Missense_Mutation_p.G53D	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	55					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						GTTGGGCAAACCATGTGGATC	0.408													48	90					0	0	0.014410	0	0
SLC17A2	10246	broad.mit.edu	37	6	25914867	25914867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:25914867C>T	uc011dkb.1	-	10	1326	c.1243G>A	c.(1243-1245)GGA>AGA	p.G415R	SLC17A2_uc011dkc.1_Silent_p.G365G|SLC17A2_uc003nfl.2_Silent_p.G365G			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	415	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						AGCCCAAATCCCCTTGAGATT	0.378													24	37					0	0	0.006320	0	0
HIST1H2BD	3017	broad.mit.edu	37	6	26158580	26158580	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:26158580G>A	uc003ngr.2	+	1	232	c.183G>A	c.(181-183)GGG>GGA	p.G61G	HIST1H2BD_uc003ngs.2_Silent_p.G61G	NM_021063	NP_066407	P58876	H2B1D_HUMAN	histone cluster 1, H2bd	61					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|pancreas(1)	2						AGGCAATGGGGATCATGAATT	0.567													80	123					0	0	0.014410	0	0
HIST1H4H	8365	broad.mit.edu	37	6	26285536	26285536	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:26285536C>T	uc003nhm.2	-	1	192	c.192G>A	c.(190-192)GAG>GAA	p.E64E	HIST1H4H_uc003nhl.1_RNA	NM_003543	NP_003534	P62805	H4_HUMAN	histone cluster 1, H4h	64			E -> Q (in a breast cancer sample; somatic mutation).		CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						GAATCACGTTCTCCAGGAACA	0.562										HNSCC(76;0.23)			49	56					0	0	0.014410	0	0
BTN3A2	11118	broad.mit.edu	37	6	26370597	26370597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:26370597G>A	uc010jqh.1	+	5	740	c.481G>A	c.(481-483)GGG>AGG	p.G161R	BTN3A2_uc003nho.1_Missense_Mutation_p.G159R|BTN3A2_uc003nhp.2_Missense_Mutation_p.G161R|BTN3A2_uc011dkd.1_Missense_Mutation_p.G119R|BTN3A2_uc011dke.1_Missense_Mutation_p.G138R|BTN3A2_uc010jqi.1_Missense_Mutation_p.G159R	NM_007047	NP_008978	P78410	BT3A2_HUMAN	butyrophilin, subfamily 3, member A2 precursor	161	Extracellular (Potential).					integral to membrane					0						TGAGGATGGAGGGATCCATCT	0.493													28	66					0	0	0.005443	0	0
ABT1	29777	broad.mit.edu	37	6	26598587	26598588	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:26598587_26598588CC>TT	uc003nii.2	+	3	564_565	c.533_534CC>TT	c.(532-534)GCC>GTT	p.A178V		NM_013375	NP_037507	Q9ULW3	ABT1_HUMAN	activator of basal transcription 1	178	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleolus	DNA binding|nucleotide binding|protein binding|RNA binding|transcription coactivator activity			ovary(1)	1						GTTGCTCAAGCCAAGCGTGAGA	0.604													35	42					0	0	0.004672	0	0
GPX6	257202	broad.mit.edu	37	6	28472197	28472197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:28472197G>A	uc011dlj.1	-	6	588	c.538C>T	c.(538-540)CGC>TGC	p.R180C	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	180					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	AAGTTCCAGCGGATATCATGG	0.522													24	56					0	0	0.014323	0	0
SCAND3	114821	broad.mit.edu	37	6	28539927	28539927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:28539927G>A	uc003nlo.2	-	4	4357	c.3739C>T	c.(3739-3741)CCT>TCT	p.P1247S		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1247					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						caaaatgaaggaagtgatgct	0													18	32					0	0	0.007413	0	0
SCAND3	114821	broad.mit.edu	37	6	28541028	28541028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:28541028C>T	uc003nlo.2	-	4	3256	c.2638G>A	c.(2638-2640)GAA>AAA	p.E880K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	880					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ttagccagttcctgaatacgt	0													38	71					0	0	0.008740	0	0
OR14J1	442191	broad.mit.edu	37	6	29275193	29275193	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:29275193C>T	uc011dln.1	+	1	727	c.727C>T	c.(727-729)CTA>TTA	p.L243L		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCTACCACACCTATTTGTAGC	0.493													58	106					0	0	0.014410	0	0
GABBR1	2550	broad.mit.edu	37	6	29598337	29598337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:29598337C>T	uc003nmt.3	-	4	709	c.373G>A	c.(373-375)GCC>ACC	p.A125T	GABBR1_uc003nmp.3_5'Flank|GABBR1_uc003nms.3_5'Flank|GABBR1_uc003nmu.3_Intron|GABBR1_uc011dlr.1_5'UTR|GABBR1_uc011dls.1_Missense_Mutation_p.A125T	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	125	Extracellular (Potential).|Sushi 2.				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	TCCACCCGGGCTCCGTCCAGA	0.597													27	49					0	0	0.007291	0	0
HLA-A	3105	broad.mit.edu	37	6	29912088	29912088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:29912088C>T	uc003nol.2	+	4	809	c.809C>T	c.(808-810)GCT>GTT	p.A270V	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Missense_Mutation_p.A149V|HLA-A_uc003nok.2_Missense_Mutation_p.A149V|HLA-A_uc003non.2_Missense_Mutation_p.A270V|HLA-A_uc003noo.2_Missense_Mutation_p.A270V|HLA-A_uc010jrr.2_Missense_Mutation_p.A270V|HLA-A_uc003nom.2_Missense_Mutation_p.A149V|HLA-A_uc010klp.2_Missense_Mutation_p.A242V|HLA-A_uc011dmc.1_Missense_Mutation_p.A149V|HLA-A_uc011dmd.1_Missense_Mutation_p.A149V	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	270	Extracellular (Potential).|Alpha-3.|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						AAGTGGGCGGCTGTGGTGGTG	0.622									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			15	22					0	0	0.003330	0	0
PPP1R10	5514	broad.mit.edu	37	6	30569862	30569862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:30569862C>T	uc003nqn.1	-	19	3116	c.2564G>A	c.(2563-2565)GGG>GAG	p.G855E	PPP1R10_uc010jsc.1_Missense_Mutation_p.G509E	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	855	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GCCATGGGGCCCCCCGTGTCC	0.672													18	39					0	0	0.007413	0	0
MUC21	394263	broad.mit.edu	37	6	30954633	30954633	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:30954633C>A	uc003nsh.2	+	2	932	c.681C>A	c.(679-681)AAC>AAA	p.N227K	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	227	14.|Ser-rich.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CAGCCACCAACTCTGAGTCCA	0.627													71	136					1.37693e-34	1.53045e-34	0.014410	1	0
BAT3	7917	broad.mit.edu	37	6	31612874	31612874	+	Silent	SNP	G	A	A	rs138634242		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:31612874G>A	uc003nvg.3	-	10	1550	c.1236C>T	c.(1234-1236)TCC>TCT	p.S412S	BAT3_uc003nvf.3_Silent_p.S406S|BAT3_uc003nvh.3_Silent_p.S406S|BAT3_uc003nvi.3_Silent_p.S406S|BAT3_uc011dnw.1_Silent_p.S406S|BAT3_uc011dnx.1_Silent_p.S406S|BAT3_uc003nvj.1_Silent_p.S406S	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	412	Pro-rich.|4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						ACGGAGCCACGGATGAGGCCT	0.657													257	419					0	0	0.014410	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779173	31779173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:31779173C>T	uc003nxh.2	-	2	760	c.577G>A	c.(577-579)GGA>AGA	p.G193R	HSPA1L_uc010jte.2_Missense_Mutation_p.G193R	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	193					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTCGTTCTCCTTGACCTCCT	0.453													190	353					0	0	0.014410	0	0
CFB	629	broad.mit.edu	37	6	31915744	31915744	+	Silent	SNP	C	T	T	rs113410938		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:31915744C>T	uc003nyj.3	+	6	1061	c.783C>T	c.(781-783)ATC>ATT	p.I261I	CFB_uc011dor.1_Silent_p.I763I|CFB_uc003nyi.2_Silent_p.I261I	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	261					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						AGCGGAAGATCGTCCTGGACC	0.542													107	214					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32047087	32047087	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32047087G>A	uc003nzl.2	-	11	4300	c.4098C>T	c.(4096-4098)GCC>GCT	p.A1366A		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1453					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGACTCCGGGGCCTCCGTGC	0.642													89	165					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32052343	32052343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32052343C>T	uc003nzl.2	-	8	3494	c.3292G>A	c.(3292-3294)GAC>AAC	p.D1098N		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1185	Fibronectin type-III 4.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCGTCCCTGTCTTTGTACTGG	0.627													237	415					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32053812	32053812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32053812G>A	uc003nzl.2	-	7	3065	c.2863C>T	c.(2863-2865)CTC>TTC	p.L955F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1042					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGCTGCAGGAGAGGAGCCTGG	0.682													85	144					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32065866	32065866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32065866G>A	uc003nzl.2	-	2	312	c.110C>T	c.(109-111)CCC>CTC	p.P37L	TNXB_uc010jts.1_Missense_Mutation_p.P36L|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	37					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGGGGGCCGGGGGGCTGGCAG	0.642													186	246					0	0	0.014410	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188579	32188579	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32188579C>T	uc003obb.2	-	5	1015	c.876G>A	c.(874-876)CAG>CAA	p.Q292Q	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.Q292Q	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	292	EGF-like 7; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CCAGCCCATCCTGGCAAGTGC	0.562													73	155					0	0	0.014410	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190850	32190850	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32190850C>T	uc003obb.2	-	2	226	c.87G>A	c.(85-87)GGG>GGA	p.G29G	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.G29G	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	29	Extracellular (Potential).|EGF-like 1.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CTGGGAAACTCCCACACAGCA	0.567													87	157					0	0	0.014410	0	0
PPP1R2P1	5505	broad.mit.edu	37	6	32847262	32847262	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:32847262G>A	uc011dqk.1	+	1		c.3008G>A				NR_027771				Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 1 (PPP1R2P1), non-coding RNA.												0						TCTTGTTCCTGAACCTGATAC	0.443													7	16					0	0	0.001984	0	0
COL11A2	1302	broad.mit.edu	37	6	33157208	33157208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:33157208G>A	uc003ocx.1	-	2	349	c.121C>T	c.(121-123)CCC>TCC	p.P41S	COL11A2_uc003ocy.1_Missense_Mutation_p.P41S|COL11A2_uc003ocz.1_Missense_Mutation_p.P41S|COL11A2_uc003oda.2_Missense_Mutation_p.P41S	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	41	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGGAGGGAGGGGAACCTCAGG	0.617													28	41					0	0	0.007291	0	0
TULP1	7287	broad.mit.edu	37	6	35473911	35473911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:35473911C>T	uc003okv.3	-	10	880	c.868G>A	c.(868-870)GAA>AAA	p.E290K	TULP1_uc003okw.3_Missense_Mutation_p.E237K	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	290					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						TCCCGGGGTTCGTCCACCTCC	0.697													20	39					0	0	0.002780	0	0
SLC26A8	116369	broad.mit.edu	37	6	35923261	35923261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:35923261G>A	uc003olm.2	-	17	2011	c.1900C>T	c.(1900-1902)CCC>TCC	p.P634S	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.P216S|SLC26A8_uc003oln.2_Missense_Mutation_p.P634S|SLC26A8_uc003oll.2_Missense_Mutation_p.P529S	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	634	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GATGCTTCGGGATCCAGTTTA	0.473													32	46					0	0	0.010818	0	0
SLC26A8	116369	broad.mit.edu	37	6	35927293	35927293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:35927293C>T	uc003olm.2	-	16	1918	c.1807G>A	c.(1807-1809)GGA>AGA	p.G603R	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.G185R|SLC26A8_uc003oln.2_Missense_Mutation_p.G603R|SLC26A8_uc003oll.2_Missense_Mutation_p.G498R	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	603	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						ATCTTTCCTCCTTGTAGATTG	0.398													17	89					0	0	0.007413	0	0
MDGA1	266727	broad.mit.edu	37	6	37615001	37615001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:37615001C>T	uc003onu.1	-	10	3173	c.1994G>A	c.(1993-1995)AGG>AAG	p.R665K	MDGA1_uc003onv.1_5'UTR	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	665	Fibronectin type-III.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						GTCGGGCTCCCTCTGAGTCCA	0.637													3	4					0	0	0.009096	0	0
DNAH8	1769	broad.mit.edu	37	6	38702293	38702293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:38702293G>A	uc003ooe.1	+	3	603	c.3G>A	c.(1-3)ATG>ATA	p.M1I	DNAH8_uc003ood.1_Missense_Mutation_p.M218I	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGGCAAAAATGATGAAATTGT	0.343													50	91					0	0	0.014410	0	0
DNAH8	1769	broad.mit.edu	37	6	38749036	38749036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:38749036C>T	uc003ooe.1	+	14	2095	c.1495C>T	c.(1495-1497)CAT>TAT	p.H499Y		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACAGCTTTATCATTCTCAGAA	0.378													21	39					0	0	0.003330	0	0
DNAH8	1769	broad.mit.edu	37	6	38802367	38802367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:38802367G>A	uc003ooe.1	+	30	4264	c.3664G>A	c.(3664-3666)GTT>ATT	p.V1222I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGACCTATGGTTCCAAATAT	0.308													33	58					0	0	0.006999	0	0
DNAH8	1769	broad.mit.edu	37	6	38843583	38843583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:38843583G>A	uc003ooe.1	+	51	7786	c.7186G>A	c.(7186-7188)GAG>AAG	p.E2396K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AACCATGTATGAGTTTTATGT	0.343													13	18					0	0	0.002450	0	0
DNAH8	1769	broad.mit.edu	37	6	38877410	38877410	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:38877410C>T	uc003ooe.1	+	63	9579	c.8979C>T	c.(8977-8979)TTC>TTT	p.F2993F	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTCCTACTTCCTTTCAGACT	0.448													36	53					0	0	0.005524	0	0
TFEB	7942	broad.mit.edu	37	6	41652539	41652539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:41652539G>A	uc003oqs.1	-	10	1531	c.1229C>T	c.(1228-1230)CCC>CTC	p.P410L	TFEB_uc003oqt.1_Missense_Mutation_p.P410L|TFEB_uc003oqu.1_Missense_Mutation_p.P424L|TFEB_uc003oqr.1_Missense_Mutation_p.P325L	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	410	Pro-rich.				embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			GTAGCCCGGGGGACCCTCGTC	0.672			T	ALPHA	renal (childhood epithelioid)								16	34					0	0	0.006122	0	0
TFEB	7942	broad.mit.edu	37	6	41653836	41653836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:41653836G>A	uc003oqs.1	-	9	1245	c.943C>T	c.(943-945)CGT>TGT	p.R315C	TFEB_uc003oqt.1_Missense_Mutation_p.R315C|TFEB_uc003oqu.1_Missense_Mutation_p.R329C|TFEB_uc003oqr.1_Missense_Mutation_p.R230C	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	315	Leucine-zipper.				embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			ACCTGGATACGGAGCCAGAGC	0.542			T	ALPHA	renal (childhood epithelioid)								20	66					0	0	0.002780	0	0
UBR2	23304	broad.mit.edu	37	6	42643851	42643851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:42643851C>T	uc011dur.1	+	39	4309	c.4309C>T	c.(4309-4311)CTT>TTT	p.L1437F	UBR2_uc011dus.1_Missense_Mutation_p.L1082F|UBR2_uc003osh.2_Intron|UBR2_uc011dut.1_Missense_Mutation_p.L25F	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1437					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			AGGGATCAGCCTTGGCACTGG	0.468													54	102					0	0	0.014410	0	0
CUL7	9820	broad.mit.edu	37	6	43019452	43019452	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:43019452C>T	uc003otq.2	-	3	933	c.630G>A	c.(628-630)GAG>GAA	p.E210E	CUL7_uc011dvb.1_Silent_p.E294E|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	210					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CCAGGTGTTTCTCAATGGCTT	0.532													59	104					0	0	0.014410	0	0
MRPL2	51069	broad.mit.edu	37	6	43024063	43024063	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:43024063A>C	uc003ots.1	-	3	509	c.386T>G	c.(385-387)GTC>GGC	p.V129G	CUL7_uc011dvb.1_5'Flank|CUL7_uc003otq.2_5'Flank|CUL7_uc010jyh.2_5'Flank|KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Missense_Mutation_p.V129G	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	129					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		ATCATAGCGGACTTGGATAAC	0.507													29	65					0	0	0.008361	0	0
SLC22A7	10864	broad.mit.edu	37	6	43270098	43270099	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:43270098_43270099GG>AA	uc003out.2	+	8	1321_1322	c.1222_1223GG>AA	c.(1222-1224)GGG>AAG	p.G408K	SLC22A7_uc010jyl.1_Missense_Mutation_p.G409K|SLC22A7_uc003ous.2_Missense_Mutation_p.G406K	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	408	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CACGCAAGCTGGGACACTGCTG	0.649													5	22					0	0	0.004672	0	0
XPO5	57510	broad.mit.edu	37	6	43526285	43526285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:43526285G>A	uc003ovp.2	-	12	1476	c.1265C>T	c.(1264-1266)TCT>TTT	p.S422F		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	422					gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			ATCAAACCGAGAATATTCACA	0.423													9	13					0	0	0.004482	0	0
CAPN11	11131	broad.mit.edu	37	6	44141111	44141111	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:44141111T>C	uc003owt.1	+	7	857	c.819T>C	c.(817-819)GGT>GGC	p.G273G		NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	273	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CCCTCATGGgttgctccattg	0.308													14	21					0	0	0.001855	0	0
AARS2	57505	broad.mit.edu	37	6	44269818	44269818	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:44269818G>A	uc010jza.1	-	19	2580	c.2577C>T	c.(2575-2577)ATC>ATT	p.I859I	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	859					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	GCAGCTTACGGATGGCAGTGT	0.597													11	24					0	0	0.008291	0	0
GPR116	221395	broad.mit.edu	37	6	46849835	46849835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:46849835C>T	uc003oyo.3	-	7	911	c.622G>A	c.(622-624)GGT>AGT	p.G208S	GPR116_uc003oyp.3_Missense_Mutation_p.G208S|GPR116_uc003oyq.3_Missense_Mutation_p.G208S|GPR116_uc010jzi.1_5'Flank|GPR116_uc003oyr.2_Missense_Mutation_p.G208S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	208	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ATTCCGTAACCCTTCCGGAAC	0.368													40	72					0	0	0.007835	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47221138	47221138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:47221138C>T	uc003oyv.2	-	4	1796	c.1363G>A	c.(1363-1365)GAC>AAC	p.D455N		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	455	Cytoplasmic (Potential).|Death.				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			CGCTCGTGGTCGGCTGTGTAC	0.597													16	27					0	0	0.004990	0	0
GPR111	222611	broad.mit.edu	37	6	47649948	47649948	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:47649948C>T	uc010jzj.1	+	6	1654	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	GPR111_uc010jzk.1_Silent_p.F483F|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	551	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TGATTGTTTTCCATACCTTGC	0.463													25	52					0	0	0.006320	0	0
GPR115	221393	broad.mit.edu	37	6	47678598	47678598	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:47678598C>T	uc003oza.1	+	4	534	c.276C>T	c.(274-276)AGC>AGT	p.S92S	GPR115_uc003oyz.1_Silent_p.S149S|GPR115_uc003ozb.1_Silent_p.S90S	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	92	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CATGTACAAGCCTTTCTGTGG	0.393													6	60					0	0	0.001984	0	0
PGK2	5232	broad.mit.edu	37	6	49754641	49754641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:49754641G>A	uc003ozu.2	-	1	367	c.260C>T	c.(259-261)TCC>TTC	p.S87F		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	87					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GCCCAGCAAGGATTTGAGCTC	0.522													48	89					0	0	0.014410	0	0
PKHD1	5314	broad.mit.edu	37	6	51934295	51934295	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:51934295G>A	uc003pah.1	-	11	1014	c.738C>T	c.(736-738)ATC>ATT	p.I246I	PKHD1_uc003pai.2_Silent_p.I246I	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	246	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GTTTAGCACTGATCAGCCATG	0.453													81	133					0	0	0.014410	0	0
ICK	22858	broad.mit.edu	37	6	52902747	52902747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:52902747C>T	uc003pbh.2	-	4	636	c.146G>A	c.(145-147)CGG>CAG	p.R49Q	ICK_uc003pbi.2_Missense_Mutation_p.R49Q|ICK_uc003pbj.2_Missense_Mutation_p.R49Q	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	49	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					CTTAACCTCCCGAAGGTTCAT	0.294													11	31					0	0	0.008291	0	0
TINAG	27283	broad.mit.edu	37	6	54173634	54173634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:54173634C>T	uc003pcj.2	+	1	432	c.286C>T	c.(286-288)CCT>TCT	p.P96S	TINAG_uc003pci.2_Missense_Mutation_p.P96S|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	96	SMB.				cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			TGATTGCTGTCCTGACTACAA	0.453													47	84					0	0	0.014410	0	0
FAM83B	222584	broad.mit.edu	37	6	54805506	54805506	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:54805506G>A	uc003pck.2	+	5	1853	c.1737G>A	c.(1735-1737)GAG>GAA	p.E579E		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	579										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CACCTAAAGAGGTCCCAGACA	0.453													21	38					0	0	0.014323	0	0
DST	667	broad.mit.edu	37	6	56495132	56495132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:56495132G>A	uc003pdf.2	-	30	4121	c.4093C>T	c.(4093-4095)CTC>TTC	p.L1365F	DST_uc003pcz.3_Missense_Mutation_p.L1187F|DST_uc011dxj.1_Missense_Mutation_p.L1216F|DST_uc011dxk.1_Missense_Mutation_p.L1227F|DST_uc003pcy.3_Missense_Mutation_p.L861F|DST_uc003pdb.2_Missense_Mutation_p.L861F|DST_uc003pdc.3_Missense_Mutation_p.L861F|DST_uc003pdd.3_Missense_Mutation_p.L861F	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1187					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AGTTTTACGAGGGCTTCTGCA	0.318													22	62					0	0	0.012319	0	0
PRIM2	5558	broad.mit.edu	37	6	57512667	57512667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:57512667G>A	uc003pdx.2	+	15	1582	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	499					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		AATGGATATGGAAGGACTAGA	0.388													38	483					0	0	0.014410	0	0
EYS	346007	broad.mit.edu	37	6	66044969	66044969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:66044969C>T	uc011dxu.1	-	11	2208	c.1670G>A	c.(1669-1671)AGA>AAA	p.R557K	EYS_uc003peq.2_Missense_Mutation_p.R557K|EYS_uc003per.1_Missense_Mutation_p.R557K	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	557					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						GCCAGCCCATCTGAGAAAACA	0.353													24	38					0	0	0.003954	0	0
FAM135A	57579	broad.mit.edu	37	6	71185130	71185130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:71185130C>T	uc003pfj.2	+	4	308	c.175C>T	c.(175-177)CCA>TCA	p.P59S	FAM135A_uc003pfi.2_Missense_Mutation_p.P59S|FAM135A_uc003pfh.2_Intron|FAM135A_uc003pfk.2_Missense_Mutation_p.P59S|FAM135A_uc003pfl.2_5'UTR	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	59										central_nervous_system(1)	1						TTTAGCCTTTCCAGCCTCAGT	0.269													6	10					0	0	0.001984	0	0
FAM135A	57579	broad.mit.edu	37	6	71236209	71236209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:71236209G>A	uc003pfj.2	+	13	3555	c.3422G>A	c.(3421-3423)GGT>GAT	p.G1141D	FAM135A_uc003pfi.2_Missense_Mutation_p.G945D|FAM135A_uc003pfh.2_Missense_Mutation_p.G928D|FAM135A_uc003pfl.2_Missense_Mutation_p.G808D|FAM135A_uc003pfn.2_Missense_Mutation_p.G347D|FAM135A_uc003pfo.1_Missense_Mutation_p.G512D|FAM135A_uc010kan.1_5'Flank	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	1141										central_nervous_system(1)	1						CTGAGAGATGGTATAAACATG	0.358													65	95					0	0	0.014410	0	0
KCNQ5	56479	broad.mit.edu	37	6	73787164	73787164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:73787164G>A	uc003pgk.2	+	4	1083	c.736G>A	c.(736-738)GAC>AAC	p.D246N	KCNQ5_uc003pgj.3_Missense_Mutation_p.D246N|KCNQ5_uc011dyh.1_Missense_Mutation_p.D246N|KCNQ5_uc011dyi.1_Missense_Mutation_p.D246N|KCNQ5_uc010kat.2_Missense_Mutation_p.D246N|KCNQ5_uc011dyj.1_Missense_Mutation_p.D246N|KCNQ5_uc011dyk.1_Missense_Mutation_p.D5N	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	246	Helical; Voltage-sensor; Name=Segment S4; (Potential).				protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GGTGCGCATGGACCGAAGGGG	0.428													12	29					0	0	0.001855	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904753	73904753	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:73904753G>A	uc003pgk.2	+	14	2762	c.2415G>A	c.(2413-2415)AGG>AGA	p.R805R	KCNQ5_uc011dyh.1_Silent_p.R824R|KCNQ5_uc011dyi.1_Silent_p.R815R|KCNQ5_uc010kat.2_Silent_p.R796R|KCNQ5_uc011dyj.1_Silent_p.R695R|KCNQ5_uc011dyk.1_Silent_p.R555R	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	805					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GTTCTATGAGGAAAAGCTTTG	0.483													37	67					0	0	0.008740	0	0
COL12A1	1303	broad.mit.edu	37	6	75833061	75833061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:75833061G>A	uc003phs.2	-	43	7097	c.6931C>T	c.(6931-6933)CCA>TCA	p.P2311S	COL12A1_uc003pht.2_Missense_Mutation_p.P1147S	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2311					cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CGGGCTGGTGGAATGGTGGGA	0.433													5	12					0	0	0.001168	0	0
IMPG1	3617	broad.mit.edu	37	6	76660288	76660288	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:76660288G>A	uc003pik.1	-	13	1945	c.1815C>T	c.(1813-1815)TTC>TTT	p.F605F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	605	SEA 2.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				CCAGCTGTGTGAATTGTTGCT	0.433													11	26					0	0	0.013537	0	0
IMPG1	3617	broad.mit.edu	37	6	76660566	76660566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:76660566C>T	uc003pik.1	-	13	1667	c.1537G>A	c.(1537-1539)GAA>AAA	p.E513K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	513					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				ACCATATCTTCGCCACCTGCA	0.493													18	34					0	0	0.004990	0	0
IMPG1	3617	broad.mit.edu	37	6	76744366	76744366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:76744366G>A	uc003pik.1	-	3	570	c.440C>T	c.(439-441)TCC>TTC	p.S147F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	147					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GTGCTCCTGGGAATTGCTGAA	0.527													26	61					0	0	0.007291	0	0
ME1	4199	broad.mit.edu	37	6	84117513	84117513	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:84117513G>A	uc003pjy.2	-	2	292	c.186C>T	c.(184-186)TTC>TTT	p.F62F	ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	62					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCAGATGCTCGAAATTTTTTA	0.383													44	67					0	0	0.013114	0	0
SNAP91	9892	broad.mit.edu	37	6	84270612	84270612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:84270612C>T	uc011dze.1	-	26	2814	c.2497G>A	c.(2497-2499)GTT>ATT	p.V833I	SNAP91_uc011dzd.1_Missense_Mutation_p.V331I|SNAP91_uc003pkb.2_Missense_Mutation_p.V742I|SNAP91_uc003pkc.2_Missense_Mutation_p.V803I|SNAP91_uc003pkd.2_Missense_Mutation_p.V526I|SNAP91_uc003pka.2_Missense_Mutation_p.V831I	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	833	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GGTTGTCCAACCGATGGGGCC	0.313													16	34					0	0	0.006122	0	0
TBX18	9096	broad.mit.edu	37	6	85472279	85472279	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:85472279G>A	uc003pkl.1	-	2	480	c.480C>T	c.(478-480)ATC>ATT	p.I160I	TBX18_uc010kbq.1_Silent_p.I2I	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	160	T-box.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		CCTTGGTGATGATCATCTCAG	0.647													58	114					0	0	0.014410	0	0
C6orf165	154313	broad.mit.edu	37	6	88123562	88123562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:88123562C>T	uc003plv.2	+	4	319	c.227C>T	c.(226-228)CCA>CTA	p.P76L	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.P76L	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	76										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		ACTAAAAATCCATCCCTGGAC	0.318													20	55					0	0	0.002780	0	0
MDN1	23195	broad.mit.edu	37	6	90433234	90433234	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:90433234G>A	uc003pnn.1	-	39	5891	c.5775C>T	c.(5773-5775)AAC>AAT	p.N1925N		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1925					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TACTTACTTGGTTATTGAAAG	0.338													5	32					0	0	0.000602	0	0
MDN1	23195	broad.mit.edu	37	6	90494817	90494817	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:90494817G>A	uc003pnn.1	-	9	1479	c.1363C>T	c.(1363-1365)CGA>TGA	p.R455*	MDN1_uc003pno.1_5'UTR|MDN1_uc003pnp.1_Nonsense_Mutation_p.R455*	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	455					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTTAGCGGTCGATACCAATTT	0.388													64	107					0	0	0.014410	0	0
GJA10	84694	broad.mit.edu	37	6	90605545	90605545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:90605545G>A	uc011eaa.1	+	1	1358	c.1358G>A	c.(1357-1359)CGG>CAG	p.R453Q		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	453	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		TCTGGTTCTCGGAATAGCTCC	0.522													47	84					0	0	0.014410	0	0
FUT9	10690	broad.mit.edu	37	6	96651698	96651698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:96651698G>A	uc003pop.3	+	3	1008	c.667G>A	c.(667-669)GGA>AGA	p.G223R		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	223	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		GCAAGCATTTGGAGAATATGT	0.368													12	26					0	0	0.013537	0	0
FBXL4	26235	broad.mit.edu	37	6	99322293	99322293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:99322293G>A	uc003ppf.1	-	9	2085	c.1727C>T	c.(1726-1728)TCC>TTC	p.S576F	FBXL4_uc003ppg.1_Missense_Mutation_p.S576F|FBXL4_uc003pph.1_Missense_Mutation_p.S178F	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	576	LRR 8.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		TTTTCTTAAGGATGCCGGACT	0.323													26	57					0	0	0.007291	0	0
FBXL4	26235	broad.mit.edu	37	6	99347336	99347336	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:99347336G>A	uc003ppf.1	-	6	1483	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	FBXL4_uc003ppg.1_Silent_p.S375S|FBXL4_uc003pph.1_5'UTR|FBXL4_uc010kcp.2_5'UTR	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	375					ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		GTACTAATTCGGATCCACAAA	0.338													14	22					0	0	0.001855	0	0
MCHR2	84539	broad.mit.edu	37	6	100403862	100403862	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:100403862G>A	uc003pqh.1	-	2	477	c.162C>T	c.(160-162)CTC>CTT	p.L54L	MCHR2_uc003pqi.1_Silent_p.L54L	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	54	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TGAATACAATGAGGATGTTGC	0.388													17	30					0	0	0.006122	0	0
SIM1	6492	broad.mit.edu	37	6	100896525	100896525	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:100896525G>A	uc003pqj.3	-	6	780	c.573C>T	c.(571-573)ATC>ATT	p.I191I	SIM1_uc010kcu.2_Silent_p.I191I	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	191					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TGTACTGGCGGATCTTCAAGT	0.627													14	23					0	0	0.004007	0	0
ASCC3	10973	broad.mit.edu	37	6	101090562	101090562	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:101090562G>A	uc003pqk.2	-	24	4125	c.3796C>T	c.(3796-3798)CAA>TAA	p.Q1266*		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1266	SEC63 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		ATGTAGTATTGGGAAGGCAAA	0.373													31	48					0	0	0.008361	0	0
LIN28B	389421	broad.mit.edu	37	6	105526438	105526438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:105526438G>A	uc003pqv.1	+	4	736	c.533G>A	c.(532-534)GGA>GAA	p.G178E	LIN28B_uc010kda.1_3'UTR	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	178					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				AGTTCTCAGGGAAGACAGGAA	0.547													13	40					0	0	0.013537	0	0
SOBP	55084	broad.mit.edu	37	6	107954978	107954978	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:107954978G>A	uc003prx.2	+	6	1434	c.930G>A	c.(928-930)AAG>AAA	p.K310K		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	310							metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		CTCGGAGGAAGGCCCCCTCCC	0.602													23	33					0	0	0.014323	0	0
SOBP	55084	broad.mit.edu	37	6	107955595	107955595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:107955595C>T	uc003prx.2	+	6	2051	c.1547C>T	c.(1546-1548)CCG>CTG	p.P516L		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	516	Pro-rich.						metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		TCGCTTGCCCCGCTGGTGCCG	0.677													4	2					0	0	0.000602	0	0
ARMC2	84071	broad.mit.edu	37	6	109274371	109274371	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:109274371C>T	uc003pss.3	+	13	1906	c.1732C>T	c.(1732-1734)CTG>TTG	p.L578L	ARMC2_uc011eao.1_Silent_p.L413L	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	578	ARM 7.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		TCAGCTGGATCTGCATTCCCA	0.552													25	41					0	0	0.004656	0	0
MICAL1	64780	broad.mit.edu	37	6	109768346	109768347	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:109768346_109768347CC>TT	uc003ptj.2	-	16	2410_2411	c.2156_2157GG>AA	c.(2155-2157)CGG>CAA	p.R719Q	MICAL1_uc003ptk.2_Missense_Mutation_p.R719Q|MICAL1_uc010kdr.2_Missense_Mutation_p.R633Q|MICAL1_uc011eaq.1_Missense_Mutation_p.R738Q	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	719	LIM zinc-binding.				cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		GGAAGCAGCTCCGGTGGAAGAA	0.624													30	55					0	0	0.004672	0	0
GPR6	2830	broad.mit.edu	37	6	110301318	110301318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:110301318G>A	uc011eaw.1	+	2	1183	c.1003G>A	c.(1003-1005)GAG>AAG	p.E335K	GPR6_uc011eav.1_Missense_Mutation_p.E350K|GPR6_uc003ptu.2_Missense_Mutation_p.E335K	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	335	Cytoplasmic (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		CCGCAACCAGGAGATCCAGCG	0.617													44	92					0	0	0.014410	0	0
CDC40	51362	broad.mit.edu	37	6	110514442	110514442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:110514442C>T	uc003pua.2	+	2	271	c.247C>T	c.(247-249)CCT>TCT	p.P83S		NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	83					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		TCAGTATAATCCTACCTATGA	0.348													19	49					0	0	0.012319	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671435	112671435	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:112671435C>T	uc003pvx.1	+	3	837	c.525C>T	c.(523-525)TTC>TTT	p.F175F		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	175	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		ATGATTTATTCCCTGAGCATG	0.557													48	55					0	0	0.014410	0	0
RSPH4A	345895	broad.mit.edu	37	6	116938244	116938244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:116938244C>T	uc003pxe.2	+	1	603	c.458C>T	c.(457-459)TCT>TTT	p.S153F	RSPH4A_uc010kee.2_Missense_Mutation_p.S153F	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	153					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						TTTCAACAGTCTCAGCAACCC	0.458									Kartagener_syndrome				56	89					0	0	0.014410	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113611	117113611	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:117113611G>A	uc003pxj.1	-	6	2497	c.2475C>T	c.(2473-2475)ATC>ATT	p.I825I	GPRC6A_uc003pxk.1_Silent_p.I650I|GPRC6A_uc003pxl.1_Silent_p.I754I	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	825	Helical; Name=7; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TGCAATACAGGATTCCATAGT	0.358													19	37					0	0	0.006122	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113866	117113866	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:117113866G>A	uc003pxj.1	-	6	2242	c.2220C>T	c.(2218-2220)ATC>ATT	p.I740I	GPRC6A_uc003pxk.1_Silent_p.I565I|GPRC6A_uc003pxl.1_Silent_p.I669I	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	740	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		ACTCCAGGATGATGACTCTGG	0.483													16	22					0	0	0.004007	0	0
GPRC6A	222545	broad.mit.edu	37	6	117128139	117128139	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:117128139C>T	uc003pxj.1	-	3	751	c.729G>A	c.(727-729)GAG>GAA	p.E243E	GPRC6A_uc003pxk.1_Silent_p.E243E|GPRC6A_uc003pxl.1_Silent_p.E243E	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	243	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CTGGAAGAACCTCTTTGAAGG	0.388													33	67					0	0	0.013726	0	0
GPRC6A	222545	broad.mit.edu	37	6	117130485	117130485	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:117130485T>C	uc003pxj.1	-	2	512	c.490A>G	c.(490-492)ATG>GTG	p.M164V	GPRC6A_uc003pxk.1_Missense_Mutation_p.M164V|GPRC6A_uc003pxl.1_Missense_Mutation_p.M164V	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	164	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		ACCTGTGGCATGAGCTGTAAA	0.423													19	51					0	0	0.008871	0	0
ROS1	6098	broad.mit.edu	37	6	117683872	117683872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:117683872C>T	uc003pxp.1	-	21	3474	c.3275G>A	c.(3274-3276)AGT>AAT	p.S1092N	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1092	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GTTTGTAATACTTTGATTGGA	0.363			T	GOPC|ROS1	glioblastoma|NSCLC								26	43					0	0	0.005443	0	0
C6orf170	221322	broad.mit.edu	37	6	121481210	121481210	+	Missense_Mutation	SNP	G	A	A	rs34164166		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:121481210G>A	uc003pyo.1	-	24	2787	c.2719C>T	c.(2719-2721)CCA>TCA	p.P907S	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_Missense_Mutation_p.P6S|C6orf170_uc003pyp.1_Missense_Mutation_p.P467S	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	907					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		TTTGGCAATGGATATGATGAA	0.299													37	70					0	0	0.014410	0	0
RNF217	154214	broad.mit.edu	37	6	125397950	125397950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:125397950C>T	uc003pzs.2	+	6	891	c.553C>T	c.(553-555)CGC>TGC	p.R185C	RNF217_uc003pzr.2_Missense_Mutation_p.R242C|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	185					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		ATGCAAATATCGCTACCTCCC	0.438													31	81					0	0	0.009535	0	0
TPD52L1	7164	broad.mit.edu	37	6	125550273	125550273	+	Missense_Mutation	SNP	G	A	A	rs139731274		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:125550273G>A	uc003pzu.1	+	3	364	c.145G>A	c.(145-147)GAA>AAA	p.E49K	TPD52L1_uc003pzv.1_Missense_Mutation_p.E49K|TPD52L1_uc003pzw.1_Missense_Mutation_p.E49K|TPD52L1_uc003pzx.1_Missense_Mutation_p.E20K|TPD52L1_uc003pzy.1_Missense_Mutation_p.E20K|TPD52L1_uc003pzz.1_Missense_Mutation_p.E20K	NM_003287	NP_003278	Q16890	TPD53_HUMAN	tumor protein D52-like 1 isoform 1	49	Potential.				DNA fragmentation involved in apoptotic nuclear change|G2/M transition of mitotic cell cycle|induction of apoptosis|positive regulation of JNK cascade|positive regulation of MAP kinase activity	perinuclear region of cytoplasm	caspase activator activity|protein heterodimerization activity|protein homodimerization activity				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0265)		GCTAGAAGACGAAATTACAAC	0.418													17	17					0	0	0.007413	0	0
C6orf174	387104	broad.mit.edu	37	6	127797415	127797415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:127797415C>T	uc003qbd.2	-	6	2621	c.1756G>A	c.(1756-1758)GAG>AAG	p.E586K	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	586	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		AGCTTGAGCTCGGCCTCCCTA	0.557													54	64					0	0	0.014410	0	0
THEMIS	387357	broad.mit.edu	37	6	128134804	128134804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:128134804G>A	uc003qbi.2	-	5	1301	c.982C>T	c.(982-984)CCT>TCT	p.P328S	THEMIS_uc010kfa.2_Missense_Mutation_p.P231S|THEMIS_uc011ebt.1_Missense_Mutation_p.P328S|THEMIS_uc010kfb.2_Missense_Mutation_p.P293S	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	328	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TGTCTTTTAGGAAAATTGCTT	0.458													19	91					0	0	0.010504	0	0
THEMIS	387357	broad.mit.edu	37	6	128150657	128150657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:128150657G>A	uc003qbi.2	-	4	992	c.673C>T	c.(673-675)CTC>TTC	p.L225F	THEMIS_uc010kfa.2_Missense_Mutation_p.L128F|THEMIS_uc011ebt.1_Missense_Mutation_p.L225F|THEMIS_uc010kfb.2_Missense_Mutation_p.L190F	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	225	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						ACAGGCTTGAGAATCAGGGTA	0.368													23	53					0	0	0.003954	0	0
THEMIS	387357	broad.mit.edu	37	6	128150819	128150819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:128150819C>T	uc003qbi.2	-	4	830	c.511G>A	c.(511-513)GGA>AGA	p.G171R	THEMIS_uc010kfa.2_Missense_Mutation_p.G74R|THEMIS_uc011ebt.1_Missense_Mutation_p.G171R|THEMIS_uc010kfb.2_Missense_Mutation_p.G136R	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	171	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TAGAATTCTCCTTCTTGTGAC	0.378													39	79					0	0	0.005524	0	0
THEMIS	387357	broad.mit.edu	37	6	128176199	128176199	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:128176199A>G	uc003qbi.2	-	3	545	c.226T>C	c.(226-228)TTT>CTT	p.F76L	THEMIS_uc010kfa.2_5'UTR|THEMIS_uc011ebt.1_Missense_Mutation_p.F76L|THEMIS_uc010kfb.2_Missense_Mutation_p.F41L	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	76	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						GGCAGTTCAAATGGCTGTAGA	0.328													14	33					0	0	0.003163	0	0
PTPRK	5796	broad.mit.edu	37	6	128643369	128643369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:128643369G>A	uc003qbk.2	-	3	677	c.310C>T	c.(310-312)CAC>TAC	p.H104Y	PTPRK_uc003qbj.2_Missense_Mutation_p.H104Y|PTPRK_uc010kfc.2_Missense_Mutation_p.H104Y|PTPRK_uc011ebu.1_Missense_Mutation_p.H104Y|PTPRK_uc003qbl.1_Intron|PTPRK_uc011ebv.1_Missense_Mutation_p.H104Y|PTPRK_uc003qbm.3_Missense_Mutation_p.H33Y	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	104	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TCAATGCAGTGAGTGTCGTTC	0.418													58	98					0	0	0.014410	0	0
LAMA2	3908	broad.mit.edu	37	6	129637235	129637235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:129637235G>A	uc003qbn.2	+	27	4082	c.3977G>A	c.(3976-3978)CGA>CAA	p.R1326Q	LAMA2_uc003qbo.2_Missense_Mutation_p.R1326Q	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1326	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ACTGTGACCCGAGAAGACTTC	0.338													36	43					0	0	0.004878	0	0
SAMD3	154075	broad.mit.edu	37	6	130535580	130535580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:130535580C>T	uc003qbv.2	-	5	497	c.171G>A	c.(169-171)ATG>ATA	p.M57I	SAMD3_uc003qbx.2_Missense_Mutation_p.M57I|SAMD3_uc003qbw.2_Missense_Mutation_p.M57I|SAMD3_uc010kfg.1_Missense_Mutation_p.M57I|SAMD3_uc003qby.2_Missense_Mutation_p.M57I|SAMD3_uc003qbz.1_Missense_Mutation_p.M16I	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	57	SAM.									ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TAATTAAATCCATCAGAACAG	0.458													28	58					0	0	0.006320	0	0
ENPP1	5167	broad.mit.edu	37	6	132204911	132204911	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:132204911C>T	uc011ecf.1	+	22	2328	c.2308C>T	c.(2308-2310)CAA>TAA	p.Q770*		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	770	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	CCAGAGTTTTCAAGGTAAATA	0.274													43	78					0	0	0.011902	0	0
TAAR2	9287	broad.mit.edu	37	6	132938780	132938780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:132938780C>T	uc003qdl.1	-	2	565	c.565G>A	c.(565-567)GAG>AAG	p.E189K	TAAR2_uc010kfr.1_Missense_Mutation_p.E144K	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	189	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		TCATAGCCCTCTATTCCATCT	0.483													26	32					0	0	0.007291	0	0
VNN1	8876	broad.mit.edu	37	6	133013564	133013564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:133013564C>T	uc003qdo.2	-	5	1006	c.986G>A	c.(985-987)GGA>GAA	p.G329E		NM_004666	NP_004657	O95497	VNN1_HUMAN	vanin 1 precursor	329					acute inflammatory response|anti-apoptosis|cell-cell adhesion|cellular component movement|chronic inflammatory response|innate immune response|pantothenate metabolic process|positive regulation of T cell differentiation in thymus|response to oxidative stress	anchored to membrane|integral to membrane|plasma membrane	GPI anchor binding|pantetheine hydrolase activity			ovary(3)	3	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.0027)|GBM - Glioblastoma multiforme(226;0.0189)		TTCCTTGTTTCCTGATGAGAG	0.453													15	25					0	0	0.004007	0	0
SGK1	6446	broad.mit.edu	37	6	134491456	134491456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:134491456C>T	uc003qen.3	-	12	1335	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K	SGK1_uc003qeo.3_Missense_Mutation_p.E511K|SGK1_uc011ect.1_Missense_Mutation_p.E406K|SGK1_uc011ecu.1_Missense_Mutation_p.E372K|SGK1_uc011ecv.1_Missense_Mutation_p.E430K|SGK1_uc011ecw.1_Missense_Mutation_p.E444K	NM_005627	NP_005618	O00141	SGK1_HUMAN	serum/glucocorticoid regulated kinase 1 isoform	416	AGC-kinase C-terminal.				apoptosis|response to stress|sodium ion transport	endoplasmic reticulum|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(3)|stomach(1)|lung(1)|central_nervous_system(1)	6	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00317)|GBM - Glioblastoma multiforme(68;0.00847)		AGGAAAGCCTCGGCAGCTTCC	0.532													23	63					0	0	0.002780	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599060	136599060	+	Missense_Mutation	SNP	G	A	A	rs146790565		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:136599060G>A	uc003qgx.1	-	4	1212	c.959C>T	c.(958-960)TCG>TTG	p.S320L	BCLAF1_uc003qgw.1_Missense_Mutation_p.S320L|BCLAF1_uc003qgy.1_Missense_Mutation_p.S318L|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.S318L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	320					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AGGATAAAACGAGGAACGGCC	0.398													26	92					0	0	0.009535	0	0
OLIG3	167826	broad.mit.edu	37	6	137814848	137814849	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:137814848_137814849CC>GT	uc003qhp.1	-	1	683_684	c.459_460GG>AC	c.(457-462)GGGGGC>GGACGC	p.G154R		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	154					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		GAGTGGTGGCCCCCATAGATCT	0.658													13	25					0	0	0.004672	0	0
NMBR	4829	broad.mit.edu	37	6	142409430	142409430	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:142409430G>A	uc003qiu.2	-	1	507	c.366C>T	c.(364-366)ATC>ATT	p.I122I		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	122	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		AAGTGAGCTGGATGACAGGGA	0.587													22	32					0	0	0.014323	0	0
HIVEP2	3097	broad.mit.edu	37	6	143092491	143092491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:143092491G>A	uc003qjd.2	-	5	4128	c.3385C>T	c.(3385-3387)CCT>TCT	p.P1129S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1129					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TGCTGAAGAGGAGGCAGCACA	0.657													24	47					0	0	0.014323	0	0
GRM1	2911	broad.mit.edu	37	6	146351045	146351045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:146351045G>A	uc010khw.1	+	2	862	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	GRM1_uc010khu.1_Missense_Mutation_p.R131Q|GRM1_uc010khv.1_Missense_Mutation_p.R131Q|GRM1_uc003qll.2_Missense_Mutation_p.R131Q|GRM1_uc011edz.1_Missense_Mutation_p.R131Q|GRM1_uc011eea.1_Missense_Mutation_p.R131Q	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	131	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	ATTTCCATTCGAGATGAGAAG	0.582													41	53					0	0	0.008740	0	0
STXBP5	134957	broad.mit.edu	37	6	147694887	147694887	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:147694887C>A	uc003qlz.2	+	26	3263	c.3102C>A	c.(3100-3102)TTC>TTA	p.F1034L	STXBP5_uc010khz.1_Missense_Mutation_p.F998L|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Missense_Mutation_p.F689L	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	1034					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		GTGAACTCTTCACTCCTGTAG	0.363													23	51					1.64293e-13	1.81537e-13	0.003330	1	0
ZBTB2	57621	broad.mit.edu	37	6	151686700	151686700	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:151686700A>G	uc003qoh.2	-	3	1636	c.1501T>C	c.(1501-1503)TTA>CTA	p.L501L		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	501					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		ATGGAAGCTAACACTGGGTGG	0.448													33	85					0	0	0.006230	0	0
ZBTB2	57621	broad.mit.edu	37	6	151686991	151686992	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:151686991_151686992GG>AA	uc003qoh.2	-	3	1344_1345	c.1209_1210CC>TT	c.(1207-1212)AACCAG>AATTAG	p.Q404*		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	404	C2H2-type 3; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		CGGGCAGCCTGGTTGGCCCTGC	0.51													24	48					0	0	0.004672	0	0
SYNE1	23345	broad.mit.edu	37	6	152576878	152576878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:152576878C>T	uc010kiw.2	-	103	19710	c.19108G>A	c.(19108-19110)GGA>AGA	p.G6370R	SYNE1_uc010kiv.2_Missense_Mutation_p.G894R|SYNE1_uc003qos.3_Missense_Mutation_p.G894R|SYNE1_uc003qot.3_Missense_Mutation_p.G6299R|SYNE1_uc003qou.3_Missense_Mutation_p.G6370R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6370	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTGCCCCTCCACTCTGGGAA	0.363										HNSCC(10;0.0054)			31	60					0	0	0.013726	0	0
MYCT1	80177	broad.mit.edu	37	6	153042887	153042887	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:153042887C>T	uc003qpd.3	+	2	215	c.207C>T	c.(205-207)ATC>ATT	p.I69I	MYCT1_uc010kjc.1_Silent_p.I69I|MYCT1_uc003qpc.3_Silent_p.I69I	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	69						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		AGGACCTTATCATGTCCTTCA	0.378													30	64					0	0	0.012213	0	0
IPCEF1	26034	broad.mit.edu	37	6	154567864	154567864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:154567864G>A	uc003qpx.2	-	5	260	c.104C>T	c.(103-105)TCG>TTG	p.S35L	OPRM1_uc003qpt.1_Missense_Mutation_p.R401Q|IPCEF1_uc003qpw.2_Missense_Mutation_p.S36L|IPCEF1_uc010kjh.2_Missense_Mutation_p.S36L	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	35					response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						ATCTTTACACGATATCCTCCT	0.403													28	42					0	0	0.007291	0	0
RBM16	22828	broad.mit.edu	37	6	155148326	155148326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:155148326C>T	uc003qqa.2	+	19	2324	c.2092C>T	c.(2092-2094)CCC>TCC	p.P698S	RBM16_uc011efj.1_Missense_Mutation_p.P764S|RBM16_uc011efk.1_Missense_Mutation_p.P743S|RBM16_uc003qpz.2_Missense_Mutation_p.P698S|RBM16_uc010kji.2_Missense_Mutation_p.P719S	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	698	Pro-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		GCCTCCAGTTCCCCCACCTGT	0.368													57	101					0	0	0.014410	0	0
EZR	7430	broad.mit.edu	37	6	159188461	159188461	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:159188461G>A	uc003qrt.3	-	12	1643	c.1428C>T	c.(1426-1428)CCC>CCT	p.P476P	EZR_uc011efr.1_Silent_p.P83P|EZR_uc011efs.1_Silent_p.P444P|EZR_uc003qru.3_Silent_p.P476P	NM_003379	NP_003370	P15311	EZRI_HUMAN	ezrin	476	Interaction with SCYL3.				actin filament bundle assembly|axon guidance|cytoskeletal anchoring at plasma membrane|leukocyte cell-cell adhesion|membrane to membrane docking|regulation of cell shape	actin filament|apical plasma membrane|basolateral plasma membrane|cortical cytoskeleton|cytosol|extrinsic to membrane|filopodium|microvillus membrane|nucleolus|ruffle membrane	actin filament binding|cell adhesion molecule binding			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-17)|BRCA - Breast invasive adenocarcinoma(81;6.58e-06)		GCTCGTACACGGGGGGTGGTG	0.622													29	62					0	0	0.003271	0	0
FNDC1	84624	broad.mit.edu	37	6	159636168	159636168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:159636168G>A	uc010kjv.2	+	5	852	c.652G>A	c.(652-654)GAA>AAA	p.E218K	FNDC1_uc010kjw.1_Missense_Mutation_p.E166K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	218	Fibronectin type-III 2.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		ACGGACACACGAAATTAAAAA	0.433													30	48					0	0	0.012213	0	0
IGF2R	3482	broad.mit.edu	37	6	160471555	160471555	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:160471555C>T	uc003qta.2	+	19	2713	c.2565C>T	c.(2563-2565)ACC>ACT	p.T855T		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	855	6.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		TGGCAAAGACCGGCCCGGTGG	0.522													39	62					0	0	0.009718	0	0
SLC22A3	6581	broad.mit.edu	37	6	160828194	160828194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:160828194G>A	uc003qti.2	+	3	682	c.655G>A	c.(655-657)GGA>AGA	p.G219R	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	219						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		AGGTGTATTTGGAAAGGGGAC	0.478													48	105					0	0	0.014410	0	0
SLC22A3	6581	broad.mit.edu	37	6	160829824	160829824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:160829824G>A	uc003qti.2	+	4	755	c.728G>A	c.(727-729)GGA>GAA	p.G243E	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	243	Helical; (Potential).					integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		AGGATTGTGGGAATCGTGATT	0.423													16	29					0	0	0.004990	0	0
LPA	4018	broad.mit.edu	37	6	160977156	160977156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:160977156C>T	uc003qtl.2	-	31	4994	c.4874G>A	c.(4873-4875)CGA>CAA	p.R1625Q		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4133	Kringle 37.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GAATGTGCCTCGATAACTCTG	0.488													18	73					0	0	0.005443	0	0
LPA	4018	broad.mit.edu	37	6	161020616	161020616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:161020616G>A	uc003qtl.2	-	21	3323	c.3203C>T	c.(3202-3204)ACC>ATC	p.T1068I		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3576	Kringle 32.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGTGACAGTGGTGGAGTATGT	0.478													133	219					0	0	0.014410	0	0
C6orf118	168090	broad.mit.edu	37	6	165715373	165715373	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:165715373G>A	uc003qum.3	-	2	474	c.438C>T	c.(436-438)TTC>TTT	p.F146F	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	146											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CCACTGGAAGGAAATCCTCCT	0.627													49	86					0	0	0.014410	0	0
UNC93A	54346	broad.mit.edu	37	6	167711546	167711546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:167711546G>A	uc003qvq.2	+	4	788	c.613G>A	c.(613-615)GGC>AGC	p.G205S	UNC93A_uc003qvr.2_Intron	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	205	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CACCCTCCTGGGCATCTACAC	0.617													29	44					0	0	0.012213	0	0
TTLL2	83887	broad.mit.edu	37	6	167754874	167754874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:167754874G>A	uc003qvs.1	+	3	1574	c.1486G>A	c.(1486-1488)GAT>AAT	p.D496N	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	496					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GAGTGGGCAGGATTTTCATCT	0.547													37	42					0	0	0.003755	0	0
SMOC2	64094	broad.mit.edu	37	6	169008841	169008841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:169008841G>A	uc003qws.1	+	9	849	c.829G>A	c.(829-831)GAG>AAG	p.E277K	SMOC2_uc003qwr.1_Missense_Mutation_p.E288K	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	277	Thyroglobulin type-1 2.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		CCATAGGTACGAGCAGCCGAA	0.612													10	15					0	0	0.013537	0	0
THBS2	7058	broad.mit.edu	37	6	169648776	169648776	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr6:169648776G>A	uc003qwt.2	-	4	593	c.345C>T	c.(343-345)ATC>ATT	p.I115I		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	115	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CGTTGGAGACGATCTCGAACT	0.657													28	73					0	0	0.008361	0	0
HEATR2	54919	broad.mit.edu	37	7	819751	819751	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:819751C>G	uc010krz.1	+	12	2421	c.2401C>G	c.(2401-2403)CCA>GCA	p.P801A	HEATR2_uc003siz.2_Missense_Mutation_p.P669A|HEATR2_uc003sjb.2_Missense_Mutation_p.P181A|HEATR2_uc003sjc.2_Missense_Mutation_p.P226A	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	801	HEAT 10.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		CCTTGACGATCCAGAGAGGGC	0.567													19	26					0	0	0.012319	0	0
MICALL2	79778	broad.mit.edu	37	7	1484874	1484874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:1484874C>T	uc003skj.3	-	6	979	c.832G>A	c.(832-834)GAG>AAG	p.E278K	MICALL2_uc003ski.3_5'Flank	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	278						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		TTGTTTGCCTCCTGGGCCTTC	0.677													7	18					0	0	0.003080	0	0
AMZ1	155185	broad.mit.edu	37	7	2752457	2752457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:2752457G>A	uc003smr.1	+	7	1803	c.1442G>A	c.(1441-1443)CGA>CAA	p.R481Q	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Missense_Mutation_p.R230Q	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	481							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		CTGAGTGCCCGAAAACTCGCC	0.657													29	31					0	0	0.013726	0	0
CARD11	84433	broad.mit.edu	37	7	2979559	2979559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:2979559C>T	uc003smv.2	-	6	1092	c.688G>A	c.(688-690)GAT>AAT	p.D230N		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	230	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity	p.D223N(2)|p.N230K(1)		haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TTTAGCTGATCGATCTGAAAT	0.493			Mis		DLBCL								30	54					0	0	0.007291	0	0
SLC29A4	222962	broad.mit.edu	37	7	5338733	5338733	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:5338733C>T	uc003sod.2	+	8	1158	c.997C>T	c.(997-999)CAG>TAG	p.Q333*	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Nonsense_Mutation_p.Q333*|SLC29A4_uc003soe.2_Nonsense_Mutation_p.Q319*|SLC29A4_uc010ksw.2_RNA	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	333	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		GCCAAGGGTCCAGCGCAGCTG	0.721													9	9					0	0	0.004482	0	0
TNRC18	84629	broad.mit.edu	37	7	5413788	5413788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:5413788G>A	uc003soi.3	-	10	3476	c.3127C>T	c.(3127-3129)CCG>TCG	p.P1043S		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1043	Pro-rich.						DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GTGATACCCGGGGTGGGCGGT	0.682													3	13					0	0	0.004672	0	0
FBXL18	80028	broad.mit.edu	37	7	5540961	5540961	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:5540961G>A	uc003soo.2	-	3	1033	c.939C>T	c.(937-939)TTC>TTT	p.F313F	FBXL18_uc003son.3_Silent_p.F313F	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	313										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		ACGGGTTGTTGAATTTCATGT	0.597													14	30					0	0	0.001855	0	0
FBXL18	80028	broad.mit.edu	37	7	5545201	5545201	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:5545201G>T	uc003soo.2	-	2	173	c.79C>A	c.(79-81)CAC>AAC	p.H27N	FBXL18_uc003son.3_Missense_Mutation_p.H27N	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	27	F-box.									central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		CCTAGGAGGTGGACCCCGTCT	0.552													36	70					6.07928e-31	6.75286e-31	0.009718	1	0
FSCN1	6624	broad.mit.edu	37	7	5642949	5642949	+	Silent	SNP	C	T	T	rs147410388		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:5642949C>T	uc003sou.2	+	2	1008	c.894C>T	c.(892-894)ATC>ATT	p.I298I	FSCN1_uc003sov.2_Silent_p.I20I|FSCN1_uc003sow.2_Silent_p.I20I	NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	298					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		AGCTGGAGATCGACCGCGACA	0.637													21	46					0	0	0.014323	0	0
PMS2CL	441194	broad.mit.edu	37	7	6777062	6777062	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:6777062C>T	uc011jxb.1	+	5	1116	c.342C>T	c.(340-342)TCC>TCT	p.S114S	PMS2CL_uc003squ.2_RNA|PMS2CL_uc003sqv.1_RNA					SubName: Full=cDNA FLJ60281, highly similar to PMS1 protein homolog 2;												0						GCAGCACTTCCGTGGATTCTG	0.622													22	54					0	0	0.002780	0	0
COL28A1	340267	broad.mit.edu	37	7	7484055	7484055	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:7484055C>T	uc003src.1	-	19	1692	c.1575G>A	c.(1573-1575)GGG>GGA	p.G525G	COL28A1_uc011jxe.1_Silent_p.G208G|COL28A1_uc003srd.2_Silent_p.G80G	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	525	Collagen-like 4.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TTACCTTCTTCCCTGCAGCTC	0.453													45	77					0	0	0.014410	0	0
NXPH1	30010	broad.mit.edu	37	7	8791000	8791000	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:8791000G>A	uc003srv.2	+	3	1328	c.417G>A	c.(415-417)GGG>GGA	p.G139G	NXPH1_uc011jxh.1_Silent_p.G22G	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	139	III.					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		TGATAACTGGGAAAATTGTAG	0.398													35	42					0	0	0.003271	0	0
THSD7A	221981	broad.mit.edu	37	7	11630229	11630229	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:11630229C>T	uc003ssf.3	-	4	1563	c.1311G>A	c.(1309-1311)GTG>GTA	p.V437V		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	437	Extracellular (Potential).|TSP type-1 4.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCAAAGGGTCCACACGGCACT	0.547										HNSCC(18;0.044)			11	14					0	0	0.008291	0	0
DGKB	1607	broad.mit.edu	37	7	14613939	14613939	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:14613939G>A	uc003ssz.2	-	19	1858	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I	DGKB_uc011jxt.1_Silent_p.I538I|DGKB_uc003sta.2_Silent_p.I557I|DGKB_uc011jxu.1_Silent_p.I556I	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	557	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TGTCCAACATGATTTCTGTGC	0.368													54	113					0	0	0.014410	0	0
BZW2	28969	broad.mit.edu	37	7	16734576	16734576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:16734576G>A	uc003stl.2	+	8	947	c.769G>A	c.(769-771)GAA>AAA	p.E257K	BZW2_uc011jxx.1_Missense_Mutation_p.E63K|BZW2_uc003stm.2_Missense_Mutation_p.E63K|BZW2_uc003stj.2_Missense_Mutation_p.E257K|BZW2_uc003stk.2_Missense_Mutation_p.E181K|BZW2_uc003sto.1_Missense_Mutation_p.E105K|BZW2_uc003stp.2_Missense_Mutation_p.E105K|BZW2_uc010kua.2_Missense_Mutation_p.E257K	NM_001159767	NP_001153239	Q9Y6E2	BZW2_HUMAN	basic leucine zipper and W2 domains 2	257	W2.				cell differentiation|nervous system development|RNA metabolic process		protein binding			ovary(2)	2	Lung NSC(10;0.0367)|all_lung(11;0.0837)			UCEC - Uterine corpus endometrioid carcinoma (126;0.199)		CACCAGGAAGGAACTGCAGAA	0.532													31	38					0	0	0.009535	0	0
HDAC9	9734	broad.mit.edu	37	7	18688209	18688209	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:18688209T>G	uc003suh.2	+	10	1402	c.1361T>G	c.(1360-1362)TTG>TGG	p.L454W	HDAC9_uc003sue.2_Missense_Mutation_p.L454W|HDAC9_uc011jyd.1_Missense_Mutation_p.L454W|HDAC9_uc003sui.2_Missense_Mutation_p.L457W|HDAC9_uc003suj.2_Missense_Mutation_p.L413W|HDAC9_uc011jya.1_Missense_Mutation_p.L451W|HDAC9_uc003sua.1_Missense_Mutation_p.L432W|HDAC9_uc011jyb.1_Missense_Mutation_p.L410W|HDAC9_uc003sud.1_Missense_Mutation_p.L454W|HDAC9_uc011jyc.1_Missense_Mutation_p.L413W|HDAC9_uc003suf.1_Missense_Mutation_p.L485W|HDAC9_uc010kud.1_Missense_Mutation_p.L457W|HDAC9_uc011jye.1_Missense_Mutation_p.L426W|HDAC9_uc011jyf.1_Missense_Mutation_p.L377W|HDAC9_uc010kue.1_Missense_Mutation_p.L197W	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	454					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TCTGCACCTTTGCCTCAGAGC	0.502													19	39					0	0	0.007413	0	0
FERD3L	222894	broad.mit.edu	37	7	19184784	19184784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:19184784C>T	uc003suo.1	-	1	261	c.202G>A	c.(202-204)GAA>AAA	p.E68K	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	68	Poly-Glu.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						tggtccacttcgcactcctct	0.373													20	21					0	0	0.014323	0	0
ITGB8	3696	broad.mit.edu	37	7	20445782	20445782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:20445782G>A	uc003suu.2	+	12	2716	c.2011G>A	c.(2011-2013)GAC>AAC	p.D671N	ITGB8_uc011jyh.1_Missense_Mutation_p.D536N	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	671	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GCATTATGTCGACCAAACTTC	0.423													18	29					0	0	0.006122	0	0
ABCB5	340273	broad.mit.edu	37	7	20721179	20721179	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:20721179C>T	uc003suw.3	+	6	970	c.424C>T	c.(424-426)CGA>TGA	p.R142*	ABCB5_uc010kuh.2_Nonsense_Mutation_p.R587*	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	142	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TTCTACTATTCGAAGTGCAGA	0.398													20	35					0	0	0.008871	0	0
ABCB5	340273	broad.mit.edu	37	7	20782640	20782640	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:20782640G>A	uc003suw.3	+	16	2376	c.1830G>A	c.(1828-1830)GGG>GGA	p.G610G	ABCB5_uc010kuh.2_Silent_p.G1055G	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	610	ATP (Potential).|Cytoplasmic (Potential).|ABC transporter 2.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GCGGCTGTGGGAAAAGCACTT	0.493													12	26					0	0	0.013537	0	0
DNAH11	8701	broad.mit.edu	37	7	21678570	21678570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:21678570G>A	uc003svc.2	+	28	4877	c.4846G>A	c.(4846-4848)GAA>AAA	p.E1616K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1616	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTCTCTTTGTGAAAAAGCTCT	0.398									Kartagener_syndrome				35	69					0	0	0.003271	0	0
DNAH11	8701	broad.mit.edu	37	7	21781645	21781645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:21781645C>T	uc003svc.2	+	50	8067	c.8036C>T	c.(8035-8037)GCT>GTT	p.A2679V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2679	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CAAGCATTTGCTCCATCAATT	0.408									Kartagener_syndrome				50	71					0	0	0.014410	0	0
DNAH11	8701	broad.mit.edu	37	7	21827199	21827199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:21827199G>A	uc003svc.2	+	61	9974	c.9943G>A	c.(9943-9945)GAG>AAG	p.E3315K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3315	Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TAAATTCTATGAGGTATCAAT	0.383									Kartagener_syndrome				6	30					0	0	0.001984	0	0
DNAH11	8701	broad.mit.edu	37	7	21847502	21847502	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:21847502G>A	uc003svc.2	+	64	10219	c.10188G>A	c.(10186-10188)AAG>AAA	p.K3396K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3396	Potential.|Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTCAGTCAGAGAAGATTCGCT	0.443									Kartagener_syndrome				9	24					0	0	0.008291	0	0
DNAH11	8701	broad.mit.edu	37	7	21913052	21913052	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:21913052A>G	uc003svc.2	+	75	12180	c.12149A>G	c.(12148-12150)AAG>AGG	p.K4050R		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4050	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AATTCCATTAAGATCACTAAT	0.478									Kartagener_syndrome				26	46					0	0	0.006320	0	0
KLHL7	55975	broad.mit.edu	37	7	23164672	23164672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:23164672C>T	uc003svs.3	+	4	616	c.323C>T	c.(322-324)TCC>TTC	p.S108F	KLHL7_uc003svr.3_Missense_Mutation_p.S86F|KLHL7_uc011jys.1_Missense_Mutation_p.S32F|KLHL7_uc011jyt.1_Intron|KLHL7_uc003svt.2_Missense_Mutation_p.S60F|KLHL7_uc003svp.2_Missense_Mutation_p.S86F|KLHL7_uc003svq.2_Missense_Mutation_p.S108F|KLHL7_uc011jyu.1_Missense_Mutation_p.S86F	NM_001031710	NP_001026880	Q8IXQ5	KLHL7_HUMAN	kelch-like 7 isoform 1	108	BTB.					Golgi apparatus|nucleolus|plasma membrane					0						TGCAGAATTTCCGTGAATAGC	0.323													20	31					0	0	0.010504	0	0
STK31	56164	broad.mit.edu	37	7	23826183	23826183	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:23826183C>T	uc003sws.3	+	19	2398	c.2331C>T	c.(2329-2331)TAC>TAT	p.Y777Y	STK31_uc003swt.3_Silent_p.Y754Y|STK31_uc011jze.1_Silent_p.Y777Y|STK31_uc010kuq.2_Silent_p.Y754Y|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	777	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CAGCCACCTACCATAGAGCTT	0.423													15	35					0	0	0.003163	0	0
STK31	56164	broad.mit.edu	37	7	23854802	23854802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:23854802G>A	uc003sws.3	+	23	2867	c.2800G>A	c.(2800-2802)GGA>AGA	p.G934R	STK31_uc003swt.3_Missense_Mutation_p.G911R|STK31_uc011jze.1_Intron|STK31_uc010kuq.2_Missense_Mutation_p.G911R|STK31_uc003swv.1_Missense_Mutation_p.G100R	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	934	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AAATAAAGATGGAATCCCCAA	0.323													17	34					0	0	0.006122	0	0
NPY	4852	broad.mit.edu	37	7	24324907	24324907	+	Silent	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:24324907G>T	uc003sww.1	+	2	134	c.48G>T	c.(46-48)CTG>CTT	p.L16L		NM_000905	NP_000896	P01303	NPY_HUMAN	neuropeptide Y precursor	16					adult feeding behavior|calcium ion transport|cell proliferation|cellular component movement|central nervous system neuron development|cerebral cortex development|digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|neuron projection development|neuropeptide signaling pathway|positive regulation of appetite|synaptic transmission	cell|extracellular space	calcium channel regulator activity|G-protein coupled receptor activity|neuropeptide hormone activity				0						CCCTCGCCCTGTCCCTGCTCG	0.657													21	42					2.32416e-17	2.57446e-17	0.014323	1	0
MPP6	51678	broad.mit.edu	37	7	24703301	24703301	+	Silent	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:24703301T>A	uc003swx.2	+	7	1043	c.744T>A	c.(742-744)ATT>ATA	p.I248I	MPP6_uc003swy.2_Silent_p.I248I|MPP6_uc010kur.2_5'Flank	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	248	SH3.				protein complex assembly		protein binding				0						AAGGAGAGATTCTTCAGATTG	0.338													36	54					0	0	0.004878	0	0
C7orf31	136895	broad.mit.edu	37	7	25176401	25176401	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:25176401G>A	uc003sxn.1	-	10	1524	c.963C>T	c.(961-963)TTC>TTT	p.F321F	C7orf31_uc003sxm.1_Silent_p.F163F	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	321											0						AGACAGGGTGGAATTTTTCTT	0.428													57	74					0	0	0.014410	0	0
HOXA2	3199	broad.mit.edu	37	7	27142044	27142044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:27142044G>A	uc003syh.2	-	1	351	c.76C>T	c.(76-78)CCC>TCC	p.P26S		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	26						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						GCGACAGGGGGAAAAGATGTC	0.498													20	104					0	0	0.008871	0	0
LOC402644	402644	broad.mit.edu	37	7	28319168	28319168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:28319168G>A	uc010kuz.1	-	1	151	c.151C>T	c.(151-153)CCC>TCC	p.P51S		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						TGAAAGCAGGGACCCTTATAA	0.463													40	48					0	0	0.007835	0	0
CREB5	9586	broad.mit.edu	37	7	28858881	28858881	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:28858881G>A	uc003szq.2	+	11	1902	c.1512G>A	c.(1510-1512)CTG>CTA	p.L504L	CREB5_uc003szo.2_Silent_p.L471L|CREB5_uc003szr.2_Silent_p.L497L|CREB5_uc003szs.2_Silent_p.L365L	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	504					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GAACAGACCTGAATCCGATTC	0.473													184	280					0	0	0.014410	0	0
PLEKHA8	84725	broad.mit.edu	37	7	30101626	30101626	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:30101626C>T	uc003tam.1	+	11	1303	c.1212C>T	c.(1210-1212)GCC>GCT	p.A404A	PLEKHA8_uc003tao.2_Silent_p.A288A|PLEKHA8_uc003tap.1_Silent_p.A404A|PLEKHA8_uc003tan.2_Silent_p.A404A	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	404					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						CGACTGAAGCCCTCTTGTGGC	0.453											OREG0017934	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	41					0	0	0.010504	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31121356	31121356	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:31121356C>T	uc003tca.1	+	6	538	c.315C>T	c.(313-315)TCC>TCT	p.S105S	ADCYAP1R1_uc003tcb.1_Intron|ADCYAP1R1_uc003tcc.1_Silent_p.S105S|ADCYAP1R1_uc003tcd.1_Silent_p.S105S|ADCYAP1R1_uc003tce.1_Silent_p.S105S	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	105	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						ACAGTAACTCCTTAGATCTCT	0.493													30	56					0	0	0.012213	0	0
KBTBD2	25948	broad.mit.edu	37	7	32909368	32909368	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:32909368G>A	uc003tdb.2	-	4	2120	c.1461C>T	c.(1459-1461)CTC>CTT	p.L487L	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	487	Kelch 4.										0			GBM - Glioblastoma multiforme(11;0.0499)			TGCCAGAGGGGAGTCTTATGC	0.423													43	70					0	0	0.014410	0	0
NT5C3	51251	broad.mit.edu	37	7	33102236	33102236	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:33102236G>T	uc003tdk.2	-	1	174	c.97C>A	c.(97-99)CAG>AAG	p.Q33K	NT5C3_uc003tdj.2_5'UTR	NM_001002010	NP_001002010	Q9H0P0	5NT3_HUMAN	5'-nucleotidase, cytosolic III isoform 1	33					nucleotide metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol|endoplasmic reticulum	2'-phosphotransferase activity|5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1			GBM - Glioblastoma multiforme(11;0.0894)			AATATGTACTGAGCCAGCACC	0.697													7	9					8.12818e-05	8.89862e-05	0.001984	1	0
NT5C3	51251	broad.mit.edu	37	7	33102262	33102262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:33102262G>A	uc003tdk.2	-	1	148	c.71C>T	c.(70-72)GCC>GTC	p.A24V	NT5C3_uc003tdj.2_5'UTR	NM_001002010	NP_001002010	Q9H0P0	5NT3_HUMAN	5'-nucleotidase, cytosolic III isoform 1	24					nucleotide metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol|endoplasmic reticulum	2'-phosphotransferase activity|5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1			GBM - Glioblastoma multiforme(11;0.0894)			CGCCACCAGGGCGCACACGCT	0.652													5	5					0	0	0.000602	0	0
ELMO1	9844	broad.mit.edu	37	7	37355536	37355536	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:37355536T>A	uc003tfk.1	-	3	414	c.107A>T	c.(106-108)GAA>GTA	p.E36V	ELMO1_uc010kxg.1_Missense_Mutation_p.E36V	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	36					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						ATCACAGACTTCCTTTATTAT	0.279													39	244					0	0	0.011902	0	0
GLI3	2737	broad.mit.edu	37	7	42012223	42012223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:42012223G>A	uc011kbh.1	-	13	1907	c.1816C>T	c.(1816-1818)CCA>TCA	p.P606S	GLI3_uc011kbg.1_Missense_Mutation_p.P547S	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	606					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CACACATATGGTTTCTGCCAA	0.468									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				16	14					0	0	0.003163	0	0
HECW1	23072	broad.mit.edu	37	7	43484300	43484300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:43484300G>A	uc003tid.1	+	11	2134	c.1529G>A	c.(1528-1530)GGA>GAA	p.G510E	HECW1_uc011kbi.1_Missense_Mutation_p.G510E	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	510	Glu-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						gaggaggaggGAGATGTGTCT	0.542													8	11					0	0	0.003080	0	0
HECW1	23072	broad.mit.edu	37	7	43508616	43508616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:43508616G>A	uc003tid.1	+	16	3616	c.3011G>A	c.(3010-3012)CGG>CAG	p.R1004Q	HECW1_uc011kbi.1_Missense_Mutation_p.R970Q	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1004					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CAGCACAACCGGGACTTGGTG	0.537													42	54					0	0	0.009718	0	0
HECW1	23072	broad.mit.edu	37	7	43580801	43580801	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:43580801C>T	uc003tid.1	+	25	4664	c.4059C>T	c.(4057-4059)ATC>ATT	p.I1353I	HECW1_uc011kbi.1_Silent_p.I1319I	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1353	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TGGCTCTGATCCATCAGTACC	0.478													32	73					0	0	0.004878	0	0
CAMK2B	816	broad.mit.edu	37	7	44286758	44286758	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:44286758G>A	uc003tkq.2	-	6	585	c.375C>T	c.(373-375)CTC>CTT	p.L125L	CAMK2B_uc003tkp.2_Silent_p.L125L|CAMK2B_uc003tkx.2_Silent_p.L125L|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Silent_p.L125L|CAMK2B_uc003tks.2_Silent_p.L125L|CAMK2B_uc003tku.2_Silent_p.L125L|CAMK2B_uc003tkv.2_Silent_p.L125L|CAMK2B_uc003tkt.2_Silent_p.L125L|CAMK2B_uc003tkw.2_Silent_p.L125L|CAMK2B_uc010kyc.2_Silent_p.L125L	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	125	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						GGTGACAATGGAGAACGGCCT	0.587													11	16					0	0	0.010729	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578576	44578576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:44578576G>A	uc003tlb.2	-	2	1476	c.1420C>T	c.(1420-1422)CCC>TCC	p.P474S	NPC1L1_uc003tlc.2_Missense_Mutation_p.P474S|NPC1L1_uc011kbw.1_Missense_Mutation_p.P474S|NPC1L1_uc003tld.2_Missense_Mutation_p.P474S	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	474	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GGATTGAGGGGGGCGTAGCAG	0.597													14	29					0	0	0.002450	0	0
OGDH	4967	broad.mit.edu	37	7	44734097	44734097	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:44734097C>T	uc003tln.2	+	12	1699	c.1590C>T	c.(1588-1590)ATC>ATT	p.I530I	OGDH_uc011kbx.1_Silent_p.I526I|OGDH_uc011kby.1_Silent_p.I380I|OGDH_uc003tlp.2_Silent_p.I541I|OGDH_uc011kbz.1_Silent_p.I325I|OGDH_uc003tlo.1_Silent_p.I363I	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	530					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	ACAAGCAGATCCGCAAGCAGA	0.572													19	45					0	0	0.007413	0	0
ADCY1	107	broad.mit.edu	37	7	45750231	45750231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:45750231G>A	uc003tne.3	+	19	3055	c.3037G>A	c.(3037-3039)GGG>AGG	p.G1013R		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1013	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GGATAGCACAGGGGTCCAGGG	0.453													17	22					0	0	0.004990	0	0
PKD1L1	168507	broad.mit.edu	37	7	47851488	47851488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:47851488G>A	uc003tny.1	-	50	7508	c.7508C>T	c.(7507-7509)CCC>CTC	p.P2503L	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Missense_Mutation_p.P230L	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2503	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CAGGGATGAGGGGACGAGACT	0.592													5	18					0	0	0.001168	0	0
PKD1L1	168507	broad.mit.edu	37	7	47880064	47880064	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:47880064G>A	uc003tny.1	-	35	5547	c.5547C>T	c.(5545-5547)ATC>ATT	p.I1849I		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1849	PLAT.|Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AATACCTCAGGATAAAGGTGT	0.403													13	47					0	0	0.013537	0	0
ABCA13	154664	broad.mit.edu	37	7	48528851	48528851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:48528851G>A	uc003toq.2	+	48	13226	c.13201G>A	c.(13201-13203)GGT>AGT	p.G4401S	ABCA13_uc010kys.1_Missense_Mutation_p.G1476S|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.G131S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4401					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TAATCAGAAGGGTTTTCATTC	0.378													9	16					0	0	0.006214	0	0
POM121L12	285877	broad.mit.edu	37	7	53103675	53103676	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:53103675_53103676GG>AA	uc003tpz.2	+	1	327_328	c.311_312GG>AA	c.(310-312)GGG>GAA	p.G104E		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	104											0						GCCCTTCCCGGGGAGACCGCTC	0.718													12	16					0	0	0.004672	0	0
FKBP9L	360132	broad.mit.edu	37	7	55759072	55759072	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:55759072C>T	uc010kzl.2	-	3	310	c.210G>A	c.(208-210)AAG>AAA	p.K70K	FKBP9L_uc003tqt.2_5'Flank|FKBP9L_uc011kcs.1_5'Flank	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						AATCTCCCTTCTTACTCAGCA	0.522													23	29					0	0	0.012319	0	0
SEPT14	346288	broad.mit.edu	37	7	55912396	55912396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:55912396C>T	uc003tqz.2	-	4	308	c.191G>A	c.(190-192)GGA>GAA	p.G64E		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	64	GTP (By similarity).				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TGTCGATTTTCCAATTCCAGT	0.343													8	26					0	0	0.003080	0	0
PSPH	5723	broad.mit.edu	37	7	56085030	56085030	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:56085030G>A	uc003trg.2	-	5	681	c.318C>T	c.(316-318)TTC>TTT	p.F106F	PSPH_uc003trh.2_Silent_p.F106F|PSPH_uc003tri.2_Silent_p.F106F|PSPH_uc003trj.2_Silent_p.F135F	NM_004577	NP_004568	P78330	SERB_HUMAN	phosphoserine phosphatase	106					L-serine biosynthetic process	cytoplasm	calcium ion binding|magnesium ion binding|phosphoserine phosphatase activity|protein homodimerization activity			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CAGATATTAGGAAAACCTGAA	0.363													9	21					0	0	0.004482	0	0
ZNF479	90827	broad.mit.edu	37	7	57194383	57194384	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:57194383_57194384CC>TT	uc010kzo.2	-	3	352_353	c.81_82GG>AA	c.(79-84)CTGGAG>CTAAAG	p.E28K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TGCCATTCCTCCAGAGAGAATT	0.436													23	37					0	0	0.004672	0	0
ZNF479	90827	broad.mit.edu	37	7	57200000	57200000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:57200000C>T	uc010kzo.2	-	2	303	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			CACCATTTCTCGGCTTCCAGG	0.552													18	42					0	0	0.012319	0	0
ZNF716	441234	broad.mit.edu	37	7	57522258	57522258	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:57522258G>A	uc011kdi.1	+	2	244	c.132G>A	c.(130-132)GTG>GTA	p.V44V		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ATAGAGATGTGATGTTAGAGA	0.388													18	47					0	0	0.012319	0	0
ZNF735	730291	broad.mit.edu	37	7	63680295	63680295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:63680295G>A	uc011kdn.1	+	4	866	c.866G>A	c.(865-867)AGA>AAA	p.R289K		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	289	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AACCACAAGAGAATTCATACT	0.443													10	29					0	0	0.006214	0	0
ZNF679	168417	broad.mit.edu	37	7	63726906	63726906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:63726906G>A	uc003tsx.2	+	5	1164	c.895G>A	c.(895-897)GAA>AAA	p.E299K		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	299	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATACACATGTGAAGAATGTGG	0.438													9	13					0	0	0.004482	0	0
ZNF107	51427	broad.mit.edu	37	7	64168604	64168604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:64168604G>A	uc003ttd.2	+	7	2708	c.1922G>A	c.(1921-1923)TGT>TAT	p.C641Y	ZNF107_uc003tte.2_Missense_Mutation_p.C641Y	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	641	C2H2-type 21.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TGTGCAGAATGTGGCAAAGCC	0.363													29	27					0	0	0.007291	0	0
RABGEF1	27342	broad.mit.edu	37	7	66270291	66270292	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:66270291_66270292CC>TT	uc011kee.1	+	8	1191_1192	c.1027_1028CC>TT	c.(1027-1029)CCA>TTA	p.P343L	RABGEF1_uc003tvf.2_Missense_Mutation_p.P202L|RABGEF1_uc003tvg.2_Missense_Mutation_p.P137L|RABGEF1_uc010lag.2_Missense_Mutation_p.P329L|RABGEF1_uc003tvh.2_Missense_Mutation_p.P329L|RABGEF1_uc003tvi.2_Missense_Mutation_p.P163L	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	546	VPS9.				endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						GGGCAACCCCCCACGCCTTCAG	0.5													30	53					0	0	0.004672	0	0
RABGEF1	27342	broad.mit.edu	37	7	66270311	66270311	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:66270311C>T	uc011kee.1	+	8	1211	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I	RABGEF1_uc003tvf.2_Silent_p.I208I|RABGEF1_uc003tvg.2_Silent_p.I143I|RABGEF1_uc010lag.2_Silent_p.I335I|RABGEF1_uc003tvh.2_Silent_p.I335I|RABGEF1_uc003tvi.2_Silent_p.I169I	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	552	VPS9.				endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						AGTCTAATATCCAGTATATCA	0.502													38	59					0	0	0.006999	0	0
WBSCR17	64409	broad.mit.edu	37	7	70597851	70597851	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:70597851C>T	uc003tvy.2	+	1	63	c.63C>T	c.(61-63)TTC>TTT	p.F21F		NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	21	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TAGCCGGCTTCGTGCTCTTCC	0.672													9	22					0	0	0.004482	0	0
DNAJC30	84277	broad.mit.edu	37	7	73097144	73097144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:73097144C>T	uc003tys.1	-	1	638	c.610G>A	c.(610-612)GAG>AAG	p.E204K	WBSCR22_uc010lbi.1_5'Flank|WBSCR22_uc003tyt.2_5'Flank|WBSCR22_uc003tyu.2_5'Flank|WBSCR22_uc003tyv.2_5'Flank|WBSCR22_uc003tyw.1_5'Flank	NM_032317	NP_115693	Q96LL9	DJC30_HUMAN	DnaJ (Hsp40) homolog subfamily C member 30	204					protein folding		heat shock protein binding|unfolded protein binding				0						CGGGTATCCTCCCAGCGGAGG	0.572													33	76					0	0	0.003755	0	0
HIP1	3092	broad.mit.edu	37	7	75203179	75203179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:75203179G>A	uc003uds.1	-	8	673	c.632C>T	c.(631-633)TCT>TTT	p.S211F	HIP1_uc011kfz.1_Missense_Mutation_p.S88F	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	211					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						CACGGACACAGAGCGGGACAT	0.562			T	PDGFRB	CMML								20	43					0	0	0.010504	0	0
HSPB1	3315	broad.mit.edu	37	7	75933416	75933416	+	Missense_Mutation	SNP	C	T	T	rs104894020		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:75933416C>T	uc003uew.2	+	3	699	c.544C>T	c.(544-546)CCA>TCA	p.P182S	HSPB1_uc010ldj.1_RNA|uc003uey.1_5'Flank	NM_001540	NP_001531	P04792	HSPB1_HUMAN	heat shock protein beta-1	182	Interaction with TGFB1I1 (By similarity).		P -> L (in HMN2B).		anti-apoptosis|cell death|cellular component movement|mRNA metabolic process|positive regulation of interleukin-1 beta production|positive regulation of tumor necrosis factor biosynthetic process|regulation of I-kappaB kinase/NF-kappaB cascade|regulation of translational initiation|response to heat|response to unfolded protein|response to virus	cell surface|cytosol|nucleus|proteasome complex|spindle	identical protein binding|protein kinase C delta binding|protein kinase C inhibitor activity|ubiquitin binding				0						GATCACCATCCCAGTCACCTT	0.637													5	12					0	0	0.003080	0	0
HGF	3082	broad.mit.edu	37	7	81388081	81388081	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:81388081C>T	uc003uhl.2	-	3	459	c.294G>A	c.(292-294)TGG>TGA	p.W98*	HGF_uc003uhm.2_Nonsense_Mutation_p.W98*|HGF_uc003uhn.1_Nonsense_Mutation_p.W98*|HGF_uc003uho.1_Nonsense_Mutation_p.W98*|HGF_uc003uhp.2_Nonsense_Mutation_p.W98*	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	98	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TGAAGGGGAACCAGAGGCATT	0.323													32	59					0	0	0.003271	0	0
CACNA2D1	781	broad.mit.edu	37	7	81598213	81598213	+	Silent	SNP	A	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:81598213A>C	uc003uhr.1	-	29	2641	c.2385T>G	c.(2383-2385)CTT>CTG	p.L795L	CACNA2D1_uc011kgy.1_Intron	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	807	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CTGCAGGTTTAAGAAGTTTCC	0.284													26	75					0	0	0.012213	0	0
PCLO	27445	broad.mit.edu	37	7	82538248	82538248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:82538248C>T	uc003uhx.2	-	8	13671	c.13382G>A	c.(13381-13383)CGA>CAA	p.R4461Q	PCLO_uc003uhv.2_Missense_Mutation_p.R4461Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4392					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CGGCAGTTTTCGGTCCAGACC	0.418													39	53					0	0	0.007835	0	0
PCLO	27445	broad.mit.edu	37	7	82545000	82545000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:82545000G>A	uc003uhx.2	-	7	12591	c.12302C>T	c.(12301-12303)TCC>TTC	p.S4101F	PCLO_uc003uhv.2_Missense_Mutation_p.S4101F|PCLO_uc010lec.2_Missense_Mutation_p.S1066F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4032					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAATCTAGAGGAAGACTGTAA	0.438													17	17					0	0	0.004990	0	0
PCLO	27445	broad.mit.edu	37	7	82545020	82545020	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:82545020G>A	uc003uhx.2	-	7	12571	c.12282C>T	c.(12280-12282)TTC>TTT	p.F4094F	PCLO_uc003uhv.2_Silent_p.F4094F|PCLO_uc010lec.2_Silent_p.F1059F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4025					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGGTGCTAGGAAATCTGTCA	0.453													15	13					0	0	0.002450	0	0
PCLO	27445	broad.mit.edu	37	7	82580135	82580135	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:82580135A>G	uc003uhx.2	-	6	10058	c.9769T>C	c.(9769-9771)TTG>CTG	p.L3257L	PCLO_uc003uhv.2_Silent_p.L3257L|PCLO_uc010lec.2_Silent_p.L222L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3188	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGCTCCTCCAACTTTTTCTGA	0.463													44	101					0	0	0.011902	0	0
PCLO	27445	broad.mit.edu	37	7	82785564	82785564	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:82785564G>A	uc003uhx.2	-	2	682	c.393C>T	c.(391-393)TCC>TCT	p.S131S	PCLO_uc003uhv.2_Silent_p.S131S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	131					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGCTAATAGTGGAAGGACTCC	0.478													30	65					0	0	0.013726	0	0
SEMA3D	223117	broad.mit.edu	37	7	84628811	84628811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:84628811C>T	uc003uic.2	-	17	2319	c.2279G>A	c.(2278-2280)CGA>CAA	p.R760Q	SEMA3D_uc010led.2_Missense_Mutation_p.R760Q|SEMA3D_uc003uib.2_Missense_Mutation_p.R399Q	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	760	Arg/Lys-rich (basic).				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TCTTCGATTTCGTTTCTTCTT	0.453													15	38					0	0	0.003163	0	0
GRM3	2913	broad.mit.edu	37	7	86415600	86415600	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:86415600C>T	uc003uid.2	+	3	1591	c.492C>T	c.(490-492)TTC>TTT	p.F164F	GRM3_uc010lef.2_Silent_p.F162F|GRM3_uc010leg.2_Silent_p.F36F|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	164	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGCGGCTCTTCCAGATCCCTC	0.527													69	123					0	0	0.014410	0	0
GRM3	2913	broad.mit.edu	37	7	86468884	86468884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:86468884C>T	uc003uid.2	+	4	3153	c.2054C>T	c.(2053-2055)CCC>CTC	p.P685L	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.P557L|GRM3_uc010leh.2_Missense_Mutation_p.P277L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	685	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTCATCAGCCCCAGTTCTCAG	0.537													27	54					0	0	0.008361	0	0
ABCB4	5244	broad.mit.edu	37	7	87069527	87069527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:87069527C>T	uc003uiv.1	-	13	1624	c.1548G>A	c.(1546-1548)ATG>ATA	p.M516I	ABCB4_uc003uiw.1_Missense_Mutation_p.M516I|ABCB4_uc003uix.1_Missense_Mutation_p.M516I	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	516	ABC transporter 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GTGGTAATTTCATGATAAACT	0.368													9	45					0	0	0.008291	0	0
ABCB1	5243	broad.mit.edu	37	7	87175289	87175289	+	Missense_Mutation	SNP	G	A	A	rs28381914		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:87175289G>A	uc003uiz.1	-	16	2195	c.1777C>T	c.(1777-1779)CGT>TGT	p.R593C	ABCB1_uc011khc.1_Missense_Mutation_p.R529C	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	593	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TCAGCATTACGAACTGTAGAC	0.393													30	55					0	0	0.008361	0	0
GTPBP10	85865	broad.mit.edu	37	7	90003662	90003662	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:90003662C>T	uc003ukm.1	+	6	651	c.585C>T	c.(583-585)TTC>TTT	p.F195F	GTPBP10_uc003uki.1_Silent_p.F212F|GTPBP10_uc003ukj.1_Silent_p.F186F|GTPBP10_uc003ukk.1_RNA|GTPBP10_uc003ukl.1_RNA|GTPBP10_uc003ukn.1_Silent_p.F116F|GTPBP10_uc003uko.1_Silent_p.F5F	NM_033107	NP_149098	A4D1E9	GTPBA_HUMAN	GTP-binding protein 10 isoform 2	195					ribosome biogenesis	chromosome|nucleolus	GTP binding|GTPase activity|magnesium ion binding				0						ACAGTGATTTCAAACAGGTAG	0.318													21	57					0	0	0.002780	0	0
AKAP9	10142	broad.mit.edu	37	7	91708885	91708885	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:91708885C>T	uc003ulg.2	+	31	7663	c.7438C>T	c.(7438-7440)CAG>TAG	p.Q2480*	AKAP9_uc003ulf.2_Nonsense_Mutation_p.Q2472*|AKAP9_uc003uli.2_Nonsense_Mutation_p.Q2103*|AKAP9_uc003ulj.2_Nonsense_Mutation_p.Q250*	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2492	Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CCTAGAAAATCAGACATACTT	0.373			T	BRAF	papillary thyroid								19	39					0	0	0.006122	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92844842	92844842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:92844842G>A	uc003umm.2	-	3	610	c.587C>T	c.(586-588)TCC>TTC	p.S196F	HEPACAM2_uc003uml.2_Missense_Mutation_p.S184F|HEPACAM2_uc010lff.2_Missense_Mutation_p.S184F|HEPACAM2_uc011khy.1_Missense_Mutation_p.S219F	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	196	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						GGGAGAAAAGGAGTAGGTGGA	0.502													36	69					0	0	0.006230	0	0
CALCR	799	broad.mit.edu	37	7	93090156	93090156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:93090156C>T	uc003umv.1	-	9	988	c.727G>A	c.(727-729)GGA>AGA	p.G243R	CALCR_uc011kia.1_Missense_Mutation_p.G23R|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.G209R|CALCR_uc003umw.2_Missense_Mutation_p.G209R	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	225	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	ACGAGCTCTCCATTGGGTACT	0.398													27	69					0	0	0.006320	0	0
PEG10	23089	broad.mit.edu	37	7	94293171	94293171	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:94293171G>A	uc011kie.1	+	2	748	c.531G>A	c.(529-531)CAG>CAA	p.Q177Q		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	101	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			CCCAGTGCCAGATCTTCATGG	0.572													21	34					0	0	0.012319	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95442568	95442568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:95442568C>T	uc003uoc.3	+	4	561	c.284C>T	c.(283-285)CCT>CTT	p.P95L	DYNC1I1_uc003uod.3_Missense_Mutation_p.P78L|DYNC1I1_uc003uob.2_Missense_Mutation_p.P78L|DYNC1I1_uc003uoe.3_Missense_Mutation_p.P95L|DYNC1I1_uc010lfl.2_Missense_Mutation_p.P84L	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	95	Interaction with DCTN1 (By similarity).				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			GTCCCAACCCCTATGTCTCCC	0.458													31	46					0	0	0.008361	0	0
LMTK2	22853	broad.mit.edu	37	7	97814435	97814435	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:97814435C>T	uc003upd.1	+	8	1157	c.864C>T	c.(862-864)TTC>TTT	p.F288F		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	288	Protein kinase.				early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GAATAGGATTCAGCAGGTACA	0.398													12	25					0	0	0.013537	0	0
LMTK2	22853	broad.mit.edu	37	7	97822775	97822775	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:97822775C>T	uc003upd.1	+	11	3291	c.2998C>T	c.(2998-3000)CTG>TTG	p.L1000L		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1000					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CCCGGACTCTCTGGAGTCAGT	0.597													75	87					0	0	0.014410	0	0
NPTX2	4885	broad.mit.edu	37	7	98256641	98256641	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:98256641C>T	uc003upl.2	+	4	1230	c.1053C>T	c.(1051-1053)ATC>ATT	p.I351I		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	351	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			GCGTGCTGATCCTTGGACAAG	0.672													16	24					0	0	0.003163	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99123980	99123980	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:99123980C>T	uc003uqv.2	+	6	1441	c.1317C>T	c.(1315-1317)TTC>TTT	p.F439F	ZKSCAN5_uc010lfx.2_Silent_p.F439F|ZKSCAN5_uc003uqw.2_Silent_p.F439F|ZKSCAN5_uc003uqx.2_Silent_p.F366F|ZKSCAN5_uc003uqy.2_Silent_p.F175F	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	439	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					GGAAGAACTTCGGTCGCCATT	0.537													102	148					0	0	0.014410	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99129205	99129205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:99129205C>T	uc003uqv.2	+	7	1977	c.1853C>T	c.(1852-1854)TCC>TTC	p.S618F	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.S618F|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.S618F|ZKSCAN5_uc003uqx.2_Missense_Mutation_p.S545F|ZKSCAN5_uc003uqy.2_Missense_Mutation_p.S354F	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	618	C2H2-type 7.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					AGAGTGAGGTCCCACCTTGTT	0.557													16	26					0	0	0.004990	0	0
ZAN	7455	broad.mit.edu	37	7	100349900	100349900	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100349900C>T	uc003uwj.2	+	14	2337	c.2172C>T	c.(2170-2172)CCC>CCT	p.P724P	ZAN_uc003uwk.2_Silent_p.P724P|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	724	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CAGAAAAACCCACCATCCCCA	0.512													18	31					0	0	0.008871	0	0
SRRT	51593	broad.mit.edu	37	7	100484522	100484522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100484522C>T	uc003uwy.2	+	15	2022	c.1754C>T	c.(1753-1755)CCT>CTT	p.P585L	SRRT_uc010lhl.1_Missense_Mutation_p.P584L|SRRT_uc003uxa.2_Missense_Mutation_p.P584L|SRRT_uc003uwz.2_Missense_Mutation_p.P585L	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	585					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						GGCGCTCCTCCTGAGGAGCCT	0.617													41	70					0	0	0.011902	0	0
MUC17	140453	broad.mit.edu	37	7	100675956	100675956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100675956C>T	uc003uxp.1	+	3	1312	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	420	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|5.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTGTTGACTCCAAAACTTTT	0.468													99	153					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100679768	100679768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100679768C>T	uc003uxp.1	+	3	5124	c.5071C>T	c.(5071-5073)CCT>TCT	p.P1691S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1691	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|26.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGGAAGAACTCCTTTAACAAG	0.478													85	152					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100685708	100685708	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100685708C>T	uc003uxp.1	+	3	11064	c.11011C>T	c.(11011-11013)CAA>TAA	p.Q3671*	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3671	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACTTCTACCCAAGTCAGTTC	0.507													58	92					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100686443	100686443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100686443C>T	uc003uxp.1	+	3	11799	c.11746C>T	c.(11746-11748)CCC>TCC	p.P3916S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3916	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGCCTCAACTCCCACAATTCC	0.498													52	80					0	0	0.014410	0	0
PMPCB	9512	broad.mit.edu	37	7	102948111	102948111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:102948111G>A	uc003vbl.2	+	7	839	c.805G>A	c.(805-807)GGA>AGA	p.G269R	PMPCB_uc010liu.1_Missense_Mutation_p.G269R|PMPCB_uc003vbk.1_Missense_Mutation_p.G269R|PMPCB_uc003vbm.2_Missense_Mutation_p.G178R|PMPCB_uc010liv.2_Missense_Mutation_p.G175R|PMPCB_uc010liw.2_Missense_Mutation_p.G178R|PMPCB_uc011kll.1_Missense_Mutation_p.G164R|PMPCB_uc011klm.1_Missense_Mutation_p.G144R	NM_004279	NP_004270	O75439	MPPB_HUMAN	mitochondrial processing peptidase beta subunit	269					proteolysis	mitochondrial matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)	4						CACACACAAAGGAGAAATACC	0.393													9	38					0	0	0.008291	0	0
C7orf66	154907	broad.mit.edu	37	7	108524165	108524165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:108524165G>A	uc003vfo.2	-	2	295	c.247C>T	c.(247-249)CAT>TAT	p.H83Y		NM_001024607	NP_001019778	A4D0T2	CG066_HUMAN	hypothetical protein LOC154907	83						integral to membrane				ovary(2)	2						TATCCCTCATGAATTCTAGTT	0.393													33	40					0	0	0.013726	0	0
TFEC	22797	broad.mit.edu	37	7	115580967	115580967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:115580967G>A	uc003vhj.1	-	8	866	c.682C>T	c.(682-684)CGT>TGT	p.R228C	TFEC_uc003vhk.1_Missense_Mutation_p.R199C|TFEC_uc003vhl.3_3'UTR|TFEC_uc011kmw.1_3'UTR	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	228						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			CCATGAGTACGAGCCTGAATT	0.398													26	67					0	0	0.006320	0	0
WNT2	7472	broad.mit.edu	37	7	116955221	116955221	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:116955221C>T	uc003viz.2	-	3	792	c.492G>A	c.(490-492)GGG>GGA	p.G164G	WNT2_uc003vja.2_Silent_p.G68G	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	164					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CAAATTTGATCCCATAGTCAA	0.423													54	78					0	0	0.014410	0	0
CFTR	1080	broad.mit.edu	37	7	117230474	117230474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:117230474G>A	uc003vjd.2	+	13	1879	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	583	Cytoplasmic (Potential).|ABC transporter 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TGTTTTAACAGAAAAAGAAAT	0.284									Cystic_Fibrosis				28	59					0	0	0.013726	0	0
CFTR	1080	broad.mit.edu	37	7	117246732	117246732	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:117246732G>A	uc003vjd.2	+	18	3045	c.2913G>A	c.(2911-2913)GGG>GGA	p.G971G	CFTR_uc011knq.1_Silent_p.G377G	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	971	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTATAGGTGGGATTCTTAATA	0.303									Cystic_Fibrosis				59	111					0	0	0.014410	0	0
SLC13A1	6561	broad.mit.edu	37	7	122811947	122811947	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:122811947A>G	uc003vkm.2	-	3	265	c.240T>C	c.(238-240)GCT>GCC	p.A80A	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	80	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	CCTTGAAATAAGCAGATGCCA	0.333													21	32					0	0	0.002780	0	0
POT1	25913	broad.mit.edu	37	7	124481086	124481086	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:124481086T>G	uc003vlm.2	-	14	1911	c.1310A>C	c.(1309-1311)CAT>CCT	p.H437P	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.H306P|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	437					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TTTCACAAAATGAACTGCTAC	0.318													31	72					0	0	0.010818	0	0
CCDC136	64753	broad.mit.edu	37	7	128455871	128455871	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:128455871G>A	uc003vnv.1	+	16	3616	c.3249G>A	c.(3247-3249)GAG>GAA	p.E1083E	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Silent_p.E899E|CCDC136_uc010llq.1_Silent_p.E452E|CCDC136_uc003vny.1_Intron	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	1083	Glu-rich.					integral to membrane	protein binding			ovary(2)	2						aaaatgaagaggacaaagagg	0.284													9	8					0	0	0.006214	0	0
FLNC	2318	broad.mit.edu	37	7	128475585	128475585	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:128475585G>A	uc003vnz.3	+	2	767	c.558G>A	c.(556-558)CAG>CAA	p.Q186Q	FLNC_uc003voa.3_Silent_p.Q186Q	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	186	CH 2.|Actin-binding.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GTGACTGGCAGGACGGCAAAG	0.627													20	37					0	0	0.010504	0	0
FLNC	2318	broad.mit.edu	37	7	128480922	128480922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:128480922G>A	uc003vnz.3	+	11	1920	c.1711G>A	c.(1711-1713)GTG>ATG	p.V571M	FLNC_uc003voa.3_Missense_Mutation_p.V571M	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	571	Filamin 4.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AGAGGCAGGAGTGCAAAAGGT	0.622													9	33					0	0	0.006214	0	0
FLNC	2318	broad.mit.edu	37	7	128494134	128494134	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:128494134G>A	uc003vnz.3	+	40	6800	c.6591G>A	c.(6589-6591)CGG>CGA	p.R2197R	FLNC_uc003voa.3_Silent_p.R2164R	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2197	Intradomain insert.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GCAAGACGCGGGGCGGGGAGA	0.687													10	25					0	0	0.008291	0	0
AHCYL2	23382	broad.mit.edu	37	7	129066334	129066334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:129066334G>A	uc011kov.1	+	16	1813	c.1759G>A	c.(1759-1761)GAG>AAG	p.E587K	AHCYL2_uc003vot.2_Missense_Mutation_p.E586K|AHCYL2_uc003vov.2_Missense_Mutation_p.E484K|AHCYL2_uc011kow.1_Missense_Mutation_p.E485K|AHCYL2_uc011kox.1_Missense_Mutation_p.E484K	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	587					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						CCACTTGACAGAGCTGACAGA	0.502													34	61					0	0	0.010818	0	0
TMEM209	84928	broad.mit.edu	37	7	129815422	129815422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:129815422G>A	uc003vpn.2	-	11	1397	c.1274C>T	c.(1273-1275)TCA>TTA	p.S425L	TMEM209_uc010lmc.1_Missense_Mutation_p.S383L	NM_032842	NP_116231	Q96SK2	TM209_HUMAN	transmembrane protein 209	425						integral to membrane				ovary(2)|large_intestine(1)	3	Melanoma(18;0.0435)					CCATCGAAATGAGCTCATACA	0.403													9	15					0	0	0.013537	0	0
CPA2	1358	broad.mit.edu	37	7	129909541	129909541	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:129909541G>A	uc003vpq.2	+	3	205	c.186G>A	c.(184-186)GGG>GGA	p.G62G	CPA2_uc011kpc.1_Silent_p.G62G	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	62					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CCACCCCAGGGGAGACAGCCC	0.507													10	59					0	0	0.010729	0	0
PLXNA4	91584	broad.mit.edu	37	7	131831317	131831317	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:131831317C>T	uc003vra.3	-	28	5236	c.5007G>A	c.(5005-5007)GGG>GGA	p.G1669G	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1669	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCATCTTGCTCCCCCGGTCCC	0.572													111	202					0	0	0.014410	0	0
PLXNA4	91584	broad.mit.edu	37	7	131878935	131878935	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:131878935G>A	uc003vra.3	-	14	2971	c.2742C>T	c.(2740-2742)ATC>ATT	p.I914I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	914	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCTCACACACGATCCTGCAGG	0.607													33	63					0	0	0.004289	0	0
SLC35B4	84912	broad.mit.edu	37	7	133981213	133981213	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:133981213A>G	uc003vrn.2	-	9	1003	c.679T>C	c.(679-681)TAT>CAT	p.Y227H	SLC35B4_uc010lmk.2_Missense_Mutation_p.Y91H|SLC35B4_uc010lml.1_Missense_Mutation_p.Y159H	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	227						Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						GGAATTTCATATAACTCTGTA	0.413													5	46					0	0	0.000602	0	0
CALD1	800	broad.mit.edu	37	7	134613622	134613622	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:134613622C>T	uc003vrz.2	+	4	648	c.189C>T	c.(187-189)ACC>ACT	p.T63T	CALD1_uc003vry.2_Silent_p.T63T|CALD1_uc003vsa.2_Silent_p.T63T|CALD1_uc003vsb.2_Silent_p.T63T|CALD1_uc010lmm.2_Silent_p.T63T|CALD1_uc011kpt.1_5'UTR|CALD1_uc003vsc.2_Silent_p.T57T|CALD1_uc003vsd.2_Silent_p.T57T|CALD1_uc011kpu.1_Silent_p.T68T|CALD1_uc011kpv.1_5'UTR	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	63	Myosin and calmodulin-binding (By similarity).				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						GACAGGTGACCGACCAGGTGG	0.577													25	35					0	0	0.004656	0	0
CALD1	800	broad.mit.edu	37	7	134632263	134632263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:134632263C>T	uc003vrz.2	+	8	1996	c.1537C>T	c.(1537-1539)CCT>TCT	p.P513S	CALD1_uc003vry.2_Missense_Mutation_p.P258S|CALD1_uc003vsa.2_Missense_Mutation_p.P284S|CALD1_uc003vsb.2_Missense_Mutation_p.P258S|CALD1_uc010lmm.2_Missense_Mutation_p.P284S|CALD1_uc011kpt.1_Missense_Mutation_p.P32S|CALD1_uc003vsc.2_Missense_Mutation_p.P278S|CALD1_uc003vsd.2_Missense_Mutation_p.P252S|CALD1_uc011kpu.1_Missense_Mutation_p.P263S|CALD1_uc011kpv.1_Missense_Mutation_p.P122S|CALD1_uc003vse.2_Missense_Mutation_p.P377S	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	513					cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						CCACAGCCGCCCTGGAGGGAG	0.657													5	5					0	0	0.001168	0	0
STRA8	346673	broad.mit.edu	37	7	134939945	134939945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:134939945G>A	uc011kpx.1	+	8	886	c.886G>A	c.(886-888)GGC>AGC	p.G296S		NM_182489	NP_872295	Q7Z7C7	STRA8_HUMAN	STRA8	296					DNA replication|regulation of transcription, DNA-dependent	cytoplasm|nucleus					0						CTTTTTTAAAGGCCTTAGCTG	0.463													36	89					0	0	0.005524	0	0
CHRM2	1129	broad.mit.edu	37	7	136700040	136700040	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:136700040T>G	uc003vtf.1	+	4	1051	c.428T>G	c.(427-429)ATG>AGG	p.M143R	CHRM2_uc003vtg.1_Missense_Mutation_p.M143R|CHRM2_uc003vtj.1_Missense_Mutation_p.M143R|CHRM2_uc003vtk.1_Missense_Mutation_p.M143R|CHRM2_uc003vtl.1_Missense_Mutation_p.M143R|CHRM2_uc003vtm.1_Missense_Mutation_p.M143R|CHRM2_uc003vti.1_Missense_Mutation_p.M143R|CHRM2_uc003vto.1_Missense_Mutation_p.M143R|CHRM2_uc003vtn.1_Missense_Mutation_p.M143R|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	143	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GCAGGTATGATGATTGCAGCT	0.502													41	59					0	0	0.007835	0	0
DGKI	9162	broad.mit.edu	37	7	137284650	137284650	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:137284650C>A	uc003vtt.2	-	11	1170	c.1169G>T	c.(1168-1170)GGA>GTA	p.G390V	DGKI_uc003vtu.2_Missense_Mutation_p.G90V	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	390	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						GACTTTGGTTCCCTGTAAAAA	0.328													21	26					4.96729e-08	5.45317e-08	0.008871	1	0
AKR1D1	6718	broad.mit.edu	37	7	137791374	137791374	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:137791374C>T	uc003vtz.2	+	6	669	c.600C>T	c.(598-600)TTC>TTT	p.F200F	AKR1D1_uc011kqe.1_Silent_p.F200F|AKR1D1_uc011kqf.1_Silent_p.F159F|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	200					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						ATCCGTATTTCACCCAGCCAA	0.403													16	46					0	0	0.007413	0	0
AKR1D1	6718	broad.mit.edu	37	7	137792215	137792215	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:137792215G>A	uc003vtz.2	+	7	813	c.744G>A	c.(742-744)GGG>GGA	p.G248G	AKR1D1_uc011kqe.1_Silent_p.G248G|AKR1D1_uc011kqf.1_Silent_p.G207G|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	248					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						ACTCATTGGGGAAAAGGTACA	0.363													31	46					0	0	0.003755	0	0
TRIM24	8805	broad.mit.edu	37	7	138263977	138263977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:138263977C>T	uc003vuc.2	+	15	2500	c.2285C>T	c.(2284-2286)TCC>TTC	p.S762F	TRIM24_uc003vub.2_Missense_Mutation_p.S728F	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	762	Nuclear receptor binding site (NRBS).		S -> N.		cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						ATACTCACCTCCCTGCTCTTA	0.393													37	78					0	0	0.004878	0	0
KIAA1549	57670	broad.mit.edu	37	7	138596028	138596028	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:138596028G>A	uc011kql.1	-	4	3058	c.3009C>T	c.(3007-3009)TCC>TCT	p.S1003S	KIAA1549_uc003vuk.3_Silent_p.S953S|KIAA1549_uc011kqj.1_Silent_p.S1003S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1003	Helical; (Potential).					integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CGAAAGGACCGGATGTTACCA	0.373			O	BRAF	pilocytic astrocytoma								8	8					0	0	0.006214	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603167	138603167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:138603167G>A	uc011kql.1	-	2	1254	c.1205C>T	c.(1204-1206)CCT>CTT	p.P402L	KIAA1549_uc003vuk.3_Missense_Mutation_p.P352L|KIAA1549_uc011kqj.1_Missense_Mutation_p.P402L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	402						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GTTGTCCACAGGACCGGGGAG	0.542			O	BRAF	pilocytic astrocytoma								14	102					0	0	0.001855	0	0
BRAF	673	broad.mit.edu	37	7	140481411	140481411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:140481411C>T	uc003vwc.3	-	11	1458	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	466	ATP (By similarity).|Protein kinase.		G -> V (in LNCR).|G -> A (in melanoma).|G -> E (in melanoma).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.G466V(12)|p.G466E(5)|p.G466A(3)|p.G466R(2)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCCAAATGATCCAGATCCAAT	0.378	G466V(NCIH1666_LUNG)|G466V(CAL12T_LUNG)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				37	70					0	0	0.006230	0	0
OR9A4	130075	broad.mit.edu	37	7	141618750	141618750	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141618750C>T	uc003vwu.1	+	1	75	c.75C>T	c.(73-75)ATC>ATT	p.I25I		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	25	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TACATCATATCCTTTTTGCTA	0.398													58	144					0	0	0.014410	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635679	141635679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141635679C>T	uc003vwv.1	-	5	477	c.280G>A	c.(280-282)GAA>AAA	p.E94K	CLEC5A_uc011krm.1_Missense_Mutation_p.E71K|CLEC5A_uc003vww.1_Missense_Mutation_p.E94K|CLEC5A_uc010lnq.1_Missense_Mutation_p.E71K|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	94	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TCCCTGCTTTCATTCCAAGAT	0.428													33	62					0	0	0.013726	0	0
MGAM	8972	broad.mit.edu	37	7	141722220	141722220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141722220G>A	uc003vwy.2	+	7	917	c.863G>A	c.(862-864)AGA>AAA	p.R288K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	288	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATATTTAACAGAGACACAACT	0.433													8	82					0	0	0.004482	0	0
MGAM	8972	broad.mit.edu	37	7	141740561	141740561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141740561G>A	uc003vwy.2	+	21	2467	c.2413G>A	c.(2413-2415)GAA>AAA	p.E805K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	805	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGTCGAGATGGAACTTCCTGG	0.478													15	16					0	0	0.002450	0	0
MGAM	8972	broad.mit.edu	37	7	141763330	141763330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141763330G>A	uc003vwy.2	+	36	4343	c.4289G>A	c.(4288-4290)GGG>GAG	p.G1430E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1430	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTCGTGAATGGGGCAGTTTCT	0.498													6	8					0	0	0.001984	0	0
MGAM	8972	broad.mit.edu	37	7	141794620	141794620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141794620C>T	uc003vwy.2	+	40	4781	c.4727C>T	c.(4726-4728)GCC>GTC	p.A1576V		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1576	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CAGCTGGGGGCCTTTTACCCC	0.493													21	45					0	0	0.003330	0	0
TRYX3	136541	broad.mit.edu	37	7	141955085	141955085	+	Missense_Mutation	SNP	C	T	T	rs147205406		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:141955085C>T	uc003vxb.2	-	3	546	c.226G>A	c.(226-228)GAA>AAA	p.E76K	TRYX3_uc003vxc.3_Missense_Mutation_p.E76K	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	76	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AGATGCTTTTCATTAGAGTCT	0.408													34	68					0	0	0.013726	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881021	142881021	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:142881021C>T	uc011ksw.1	+	1	510	c.510C>T	c.(508-510)TTC>TTT	p.F170F		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	170	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					TTATTTCCTTCAGTCACAGCA	0.433													29	54					0	0	0.005443	0	0
CASP2	835	broad.mit.edu	37	7	142991774	142991774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:142991774C>T	uc003wco.2	+	6	802	c.655C>T	c.(655-657)CGC>TGC	p.R219C	CASP2_uc003wcp.2_3'UTR|CASP2_uc011kta.1_Missense_Mutation_p.R103C|CASP2_uc003wcq.2_RNA	NM_032982	NP_116764	P42575	CASP2_HUMAN	caspase 2 isoform 1 preproprotein	219					apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|protein maturation by peptide bond cleavage	cytosol	cysteine-type endopeptidase activity|enzyme binding|protein binding|protein domain specific binding			lung(2)|ovary(1)	3	Melanoma(164;0.059)					ACTGGAATTTCGCTCTGGAGG	0.527													47	62					0	0	0.014410	0	0
CLCN1	1180	broad.mit.edu	37	7	143018932	143018932	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:143018932G>A	uc003wcr.1	+	5	774	c.687G>A	c.(685-687)GTG>GTA	p.V229V	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Silent_p.V77V	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	229					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GCATCCCCGTGGGGAAAGAGG	0.602													20	25					0	0	0.010504	0	0
CLCN1	1180	broad.mit.edu	37	7	143042825	143042825	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:143042825T>G	uc003wcr.1	+	17	2229	c.2142T>G	c.(2140-2142)GAT>GAG	p.D714E	CLCN1_uc011ktc.1_Missense_Mutation_p.D326E	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	714	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TGGATGAGGATGAGGACGAAG	0.632											OREG0018402	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	10					0	0	0.000602	0	0
ZYX	7791	broad.mit.edu	37	7	143079436	143079436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:143079436G>A	uc003wcw.2	+	3	459	c.304G>A	c.(304-306)GAA>AAA	p.E102K	ZYX_uc011ktd.1_5'UTR|ZYX_uc003wcx.2_Missense_Mutation_p.E102K|ZYX_uc011kte.1_Missense_Mutation_p.E102K|ZYX_uc011ktf.1_5'UTR	NM_001010972	NP_001010972	Q15942	ZYX_HUMAN	zyxin	102	Pro-rich.				cell adhesion|cell-cell signaling|interspecies interaction between organisms|signal transduction	cell-cell adherens junction|cytoplasm|focal adhesion|integral to plasma membrane|nucleus|stress fiber	protein binding|zinc ion binding				0	Melanoma(164;0.205)					CCCGATCGAGGAATCATTTCC	0.697													17	15					0	0	0.006122	0	0
EPHA1	2041	broad.mit.edu	37	7	143097141	143097142	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:143097141_143097142GG>AA	uc003wcz.2	-	4	524_525	c.437_438CC>TT	c.(436-438)ACC>ATT	p.T146I		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	146	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CAGCCACCGTGGTTACCTGGGT	0.545													18	26					0	0	0.004672	0	0
OR2A2	442361	broad.mit.edu	37	7	143806807	143806807	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:143806807C>T	uc011ktz.1	+	1	132	c.132C>T	c.(130-132)ATC>ATT	p.I44I		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					ATGGGGTCATCTTTGGGATTA	0.507													71	118					0	0	0.014410	0	0
OR2A7	401427	broad.mit.edu	37	7	143955995	143955995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:143955995G>A	uc011kuc.1	-	1	727	c.727C>T	c.(727-729)CAC>TAC	p.H243Y	OR2A9P_uc003wec.1_Intron|uc003wed.2_5'Flank	NM_001005328	NP_001005328	Q96R45	OR2A7_HUMAN	olfactory receptor, family 2, subfamily A,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.14)					ACACAGAGGTGGGAGAAGCAG	0.453													52	273					0	0	0.014410	0	0
NOBOX	135935	broad.mit.edu	37	7	144097249	144097249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:144097249G>A	uc011kue.1	-	5	1001	c.1001C>T	c.(1000-1002)ACC>ATC	p.T334I		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	334	Homeobox.				cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					TGTTTCAATGGTGGGCCCTCC	0.617													25	53					0	0	0.005443	0	0
EZH2	2146	broad.mit.edu	37	7	148524336	148524337	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:148524336_148524337CC>TT	uc003wfd.1	-	7	813_814	c.647_648GG>AA	c.(646-648)CGG>CAA	p.R216Q	EZH2_uc011kug.1_Missense_Mutation_p.R207Q|EZH2_uc003wfb.1_Missense_Mutation_p.R216Q|EZH2_uc003wfc.1_Missense_Mutation_p.R177Q|EZH2_uc011kuh.1_Missense_Mutation_p.R207Q|EZH2_uc011kui.1_Missense_Mutation_p.R216Q|EZH2_uc011kuj.1_RNA	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	216	Interaction with DNMT1, DNMT3A and DNMT3B.				negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			AAGGAAATTTCCGAGGTGGGCG	0.342			Mis		DLBCL								52	100					0	0	0.004672	0	0
ZNF425	155054	broad.mit.edu	37	7	148801468	148801468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:148801468G>A	uc003wfj.2	-	4	1568	c.1495C>T	c.(1495-1497)CCC>TCC	p.P499S		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	499	C2H2-type 11.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TCGCCGCAGGGAAACTCCTTC	0.632													27	30					0	0	0.005443	0	0
C7orf29	113763	broad.mit.edu	37	7	150027988	150027988	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150027988G>A	uc003wgy.2	+	1	1051	c.495G>A	c.(493-495)AGG>AGA	p.R165R	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	165										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TGGCCCAGAGGGAGAAGGGCT	0.652													11	11					0	0	0.001855	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174219	150174219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150174219G>A	uc003whj.2	+	5	1679	c.1349G>A	c.(1348-1350)GGG>GAG	p.G450E		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	450						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		AGCGGGACTGGGAAGAGTGCG	0.552													32	68					0	0	0.004878	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269605	150269605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150269605G>A	uc003whl.2	+	3	529	c.447G>A	c.(445-447)ATG>ATA	p.M149I	GIMAP4_uc011kuu.1_Missense_Mutation_p.M10I|GIMAP4_uc011kuv.1_Missense_Mutation_p.M163I	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	149							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAGTTTCATGATTCTCATAT	0.453													26	38					0	0	0.003954	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389963	150389963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150389963G>A	uc003who.2	+	3	677	c.589G>A	c.(589-591)GAA>AAA	p.E197K	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	197						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAAGTGAAGGAACTAATGGA	0.453													29	59					0	0	0.013726	0	0
GIMAP2	26157	broad.mit.edu	37	7	150390381	150390381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150390381G>A	uc003who.2	+	3	1095	c.1007G>A	c.(1006-1008)AGG>AAG	p.R336K	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	336						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGACTCCTAGGTTATAGTTA	0.323													14	27					0	0	0.001855	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417886	150417886	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150417886G>A	uc003whq.2	+	3	881	c.794G>A	c.(793-795)TGG>TAG	p.W265*	GIMAP1_uc003whp.2_Nonsense_Mutation_p.W273*	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	265	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCCCGGCTGTGGAAGTGGCTG	0.746													5	11					0	0	0.000602	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439845	150439845	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150439845G>A	uc003whr.1	+	3	970	c.618G>A	c.(616-618)GTG>GTA	p.V206V	GIMAP5_uc010lpu.2_Silent_p.V64V	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	206	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCTGGCTGTGATTGAGAGGC	0.602													31	48					0	0	0.008361	0	0
ABCF2	10061	broad.mit.edu	37	7	150912052	150912052	+	Silent	SNP	G	A	A	rs144967351	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:150912052G>A	uc003wjp.2	-	14	1758	c.1647C>T	c.(1645-1647)ATC>ATT	p.I549I	ABCF2_uc003wjo.1_Silent_p.I549I	NM_007189	NP_009120	Q9UG63	ABCF2_HUMAN	ATP-binding cassette, sub-family F, member 2	549	ABC transporter 2.					ATP-binding cassette (ABC) transporter complex|mitochondrial envelope	ATP binding|ATPase activity|transporter activity			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGATGGTCTCGATATCCAGGT	0.572													20	37					0	0	0.010504	0	0
GALNTL5	168391	broad.mit.edu	37	7	151668142	151668142	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:151668142G>A	uc003wkp.2	+	3	583	c.360G>A	c.(358-360)AGG>AGA	p.R120R	GALNTL5_uc003wkq.2_5'UTR|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_5'UTR	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	120	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		CAGATACCAGGAGTAAAATGT	0.269													7	34					0	0	0.001984	0	0
GALNTL5	168391	broad.mit.edu	37	7	151711745	151711745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:151711745G>A	uc003wkp.2	+	8	1266	c.1043G>A	c.(1042-1044)GGC>GAC	p.G348D	GALNTL5_uc003wkq.2_Missense_Mutation_p.G99D|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.G237D	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	348	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		ATGTGTGGAGGCCAACTCTTT	0.358													24	56					0	0	0.004656	0	0
MLL3	58508	broad.mit.edu	37	7	151945168	151945168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:151945168G>A	uc003wla.2	-	14	2570	c.2351C>T	c.(2350-2352)TCC>TTC	p.S784F		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	784					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGTGTTGGGGAGGAAGACAC	0.428			N		medulloblastoma								15	473					0	0	0.007413	0	0
DPP6	1804	broad.mit.edu	37	7	154667731	154667731	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:154667731T>C	uc003wlk.2	+	20	2128	c.1999T>C	c.(1999-2001)TTC>CTC	p.F667L	DPP6_uc003wli.2_Missense_Mutation_p.F603L|DPP6_uc003wlm.2_Missense_Mutation_p.F605L|DPP6_uc011kvq.1_Missense_Mutation_p.F560L	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	667	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TGGCAGCGGCTTCCAAGGGAC	0.657													14	17					0	0	0.001855	0	0
NOM1	64434	broad.mit.edu	37	7	156746923	156746923	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:156746923C>T	uc003wmy.2	+	3	1254	c.1239C>T	c.(1237-1239)GCC>GCT	p.A413A		NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	413	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CTGCCTCGGCCATGCCCAGCA	0.547													18	30					0	0	0.007413	0	0
ESYT2	57488	broad.mit.edu	37	7	158536337	158536337	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:158536337C>T	uc003wob.1	-	16	1824	c.1758G>A	c.(1756-1758)GGG>GGA	p.G586G	ESYT2_uc003woc.1_Silent_p.G410G|ESYT2_uc003wny.1_5'Flank|ESYT2_uc003wnz.1_Silent_p.G25G|ESYT2_uc003woa.1_Silent_p.G163G	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	614	C2 2.					integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						CCTTCAGGTTCCCCAGGGAAC	0.542													15	22					0	0	0.002450	0	0
ERICH1	157697	broad.mit.edu	37	8	623858	623858	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:623858A>T	uc003wph.2	-	4	559	c.494T>A	c.(493-495)CTG>CAG	p.L165Q	ERICH1_uc011kwh.1_Missense_Mutation_p.L165Q|ERICH1_uc003wpe.1_Missense_Mutation_p.L71Q|ERICH1_uc003wpi.2_5'UTR	NM_207332	NP_997215	Q86X53	ERIC1_HUMAN	glutamate-rich 1	165										large_intestine(2)	2		Colorectal(14;0.158)|Ovarian(12;0.17)|Myeloproliferative disorder(644;0.185)|Hepatocellular(245;0.236)		Epithelial(5;3.29e-14)|BRCA - Breast invasive adenocarcinoma(11;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(5;3.65e-06)|READ - Rectum adenocarcinoma(1;0.0325)		TTTCTTTTTCAGTTTCCTTTT	0.438													49	53					0	0	0.014410	0	0
DLGAP2	9228	broad.mit.edu	37	8	1513858	1513858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:1513858G>A	uc003wpl.2	+	3	1097	c.1000G>A	c.(1000-1002)GAT>AAT	p.D334N	DLGAP2_uc003wpm.2_Missense_Mutation_p.D334N	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	413					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GGTACCTCAGGATGAGTGGGG	0.512													10	4					0	0	0.010729	0	0
DLGAP2	9228	broad.mit.edu	37	8	1616562	1616562	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:1616562G>A	uc003wpl.2	+	6	1735	c.1638G>A	c.(1636-1638)CTG>CTA	p.L546L	DLGAP2_uc003wpm.2_Silent_p.L546L	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	625					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CCAAGCCTCTGATCTCGGTGA	0.612													4	9					0	0	0.009096	0	0
MYOM2	9172	broad.mit.edu	37	8	2017449	2017449	+	Missense_Mutation	SNP	G	A	A	rs149104727		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:2017449G>A	uc003wpx.3	+	7	844	c.706G>A	c.(706-708)GGA>AGA	p.G236R	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	236	Ig-like C2-type 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CAATGCCCACGGACAAGTGTC	0.552													26	35					0	0	0.007291	0	0
CSMD1	64478	broad.mit.edu	37	8	2830813	2830813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:2830813G>A	uc011kwk.1	-	57	9142	c.8752C>T	c.(8752-8754)CCT>TCT	p.P2918S	CSMD1_uc011kwj.1_Missense_Mutation_p.P2247S|CSMD1_uc010lrg.2_Missense_Mutation_p.P928S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2918	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGAATCCAGGATTATTTCCT	0.428													99	182					0	0	0.014410	0	0
CSMD1	64478	broad.mit.edu	37	8	2876151	2876151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:2876151G>A	uc011kwk.1	-	52	8270	c.7880C>T	c.(7879-7881)TCC>TTC	p.S2627F	CSMD1_uc011kwj.1_Missense_Mutation_p.S1956F|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2627	Extracellular (Potential).|Sushi 17.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGGGGGAAAGGAAAGGCTTCC	0.398													45	77					0	0	0.013114	0	0
CSMD1	64478	broad.mit.edu	37	8	2910139	2910139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:2910139C>T	uc011kwk.1	-	50	7898	c.7508G>A	c.(7507-7509)GGA>GAA	p.G2503E	CSMD1_uc011kwj.1_Missense_Mutation_p.G1832E|CSMD1_uc010lrg.2_Missense_Mutation_p.G571E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2503	Extracellular (Potential).|Sushi 15.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGAACCGTTTCCTGGGGATTC	0.418													13	19					0	0	0.007413	0	0
CSMD1	64478	broad.mit.edu	37	8	3063131	3063131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:3063131C>T	uc011kwk.1	-	31	5272	c.4882G>A	c.(4882-4884)GGC>AGC	p.G1628S	CSMD1_uc011kwj.1_Missense_Mutation_p.G1020S|CSMD1_uc003wqe.2_Missense_Mutation_p.G784S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1628	Extracellular (Potential).|CUB 10.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTGTACTGGCCTCCACAGGGA	0.453													8	7					0	0	0.003080	0	0
DEFA6	1671	broad.mit.edu	37	8	6783482	6783482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:6783482C>T	uc003wqt.2	-	1	117	c.76G>A	c.(76-78)GAT>AAT	p.D26N		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	26					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		AGTGGATCATCCTCAGCTTGG	0.582													11	23					0	0	0.008291	0	0
TNKS	8658	broad.mit.edu	37	8	9563713	9563713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:9563713C>T	uc003wss.2	+	7	1224	c.1219C>T	c.(1219-1221)CAT>TAT	p.H407Y	TNKS_uc011kwv.1_Missense_Mutation_p.H407Y|TNKS_uc011kww.1_Missense_Mutation_p.H170Y	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	407	ANK 5.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		TGTGCCTCTTCATAATGCATG	0.279													41	69					0	0	0.014410	0	0
MSRA	4482	broad.mit.edu	37	8	10159071	10159071	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:10159071G>T	uc003wsx.2	+	4	556	c.359G>T	c.(358-360)CGA>CTA	p.R120L	MSRA_uc011kwx.1_Missense_Mutation_p.R80L|MSRA_uc011kwy.1_Missense_Mutation_p.R77L|MSRA_uc003wsz.2_Missense_Mutation_p.R77L|MSRA_uc003wsy.2_Missense_Mutation_p.R54L	NM_012331	NP_036463	Q9UJ68	MSRA_HUMAN	methionine sulfoxide reductase A isoform a	120					methionine metabolic process|protein modification process|response to oxidative stress	mitochondrion|nucleus	peptide-methionine-(S)-S-oxide reductase activity				0		Myeloproliferative disorder(644;0.178)			L-Methionine(DB00134)	GAAGTCGTCCGAGTGGTGTAC	0.433													23	67					2.98393e-07	3.27379e-07	0.002780	1	0
PRSS55	203074	broad.mit.edu	37	8	10387074	10387074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:10387074G>A	uc003wta.2	+	2	227	c.212G>A	c.(211-213)GGG>GAG	p.G71E	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	71	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ATCACAGGGGGGATGGAGGCG	0.502													107	149					0	0	0.014410	0	0
RP1L1	94137	broad.mit.edu	37	8	10469043	10469043	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:10469043G>A	uc003wtc.2	-	4	2794	c.2565C>T	c.(2563-2565)ACC>ACT	p.T855T		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	855					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCCTGGGCGGGGTGGGACAGT	0.731													11	11					0	0	0.010729	0	0
RP1L1	94137	broad.mit.edu	37	8	10469741	10469741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:10469741C>T	uc003wtc.2	-	4	2096	c.1867G>A	c.(1867-1869)GGA>AGA	p.G623R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	623					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAAGAGGCTCCTTCCGAGTCC	0.652													34	44					0	0	0.012213	0	0
RP1L1	94137	broad.mit.edu	37	8	10470276	10470276	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:10470276C>T	uc003wtc.2	-	4	1561	c.1332G>A	c.(1330-1332)GGG>GGA	p.G444G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	444					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ATCTCTCCCTCCCGGCAGTCC	0.716													17	57					0	0	0.007413	0	0
XKR6	286046	broad.mit.edu	37	8	10755867	10755867	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:10755867G>A	uc003wtk.1	-	3	1548	c.1521C>T	c.(1519-1521)ATC>ATT	p.I507I		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	507						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		AGCTGGCAAGGATCTTAGCTC	0.582													16	21					0	0	0.004007	0	0
MSR1	4481	broad.mit.edu	37	8	16026357	16026357	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:16026357C>T	uc003wwz.2	-	4	438	c.240G>A	c.(238-240)ACG>ACA	p.T80T	MSR1_uc010lsu.2_Silent_p.T98T|MSR1_uc003wxa.2_Silent_p.T80T|MSR1_uc003wxb.2_Silent_p.T80T|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	80	Spacer (Probable).|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		AGCAATTCTTCGTTTCCCACT	0.338													28	60					0	0	0.009535	0	0
SLC7A2	6542	broad.mit.edu	37	8	17400855	17400855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:17400855C>T	uc011kyc.1	+	2	176	c.7C>T	c.(7-9)CCT>TCT	p.P3S	SLC7A2_uc011kyd.1_Missense_Mutation_p.P43S|SLC7A2_uc011kye.1_Missense_Mutation_p.P43S|SLC7A2_uc011kyf.1_Missense_Mutation_p.P3S	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	3	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	CAGAATGATTCCTTGCAGAGC	0.522													27	34					0	0	0.005443	0	0
DOK2	9046	broad.mit.edu	37	8	21766993	21766993	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:21766993G>A	uc003wzy.1	-	5	1161	c.1068C>T	c.(1066-1068)CTC>CTT	p.L356L	DOK2_uc003wzx.1_Silent_p.L356L|DOK2_uc003wzz.1_Silent_p.L202L|DOK2_uc010lth.1_Silent_p.L202L	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	356	Pro-rich.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		GGCTGTCATAGAGGGACAGGG	0.667													16	34					0	0	0.003163	0	0
EPB49	2039	broad.mit.edu	37	8	21937924	21937924	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:21937924T>C	uc011kyt.1	+	12	1131	c.902T>C	c.(901-903)CTA>CCA	p.L301P	EPB49_uc010ltl.2_Missense_Mutation_p.L301P|EPB49_uc011kys.1_Missense_Mutation_p.L261P|EPB49_uc010ltn.2_Missense_Mutation_p.L276P|EPB49_uc011kyu.1_Missense_Mutation_p.L301P|EPB49_uc011kyv.1_Missense_Mutation_p.L301P|EPB49_uc010ltq.2_Missense_Mutation_p.L301P	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	301	Interaction with RASGRF2.				actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		CCTTTCTAGCTACAGTCCACA	0.597													32	75					0	0	0.006230	0	0
HR	55806	broad.mit.edu	37	8	21978678	21978678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:21978678G>A	uc003xas.2	-	10	2932	c.2267C>T	c.(2266-2268)CCT>CTT	p.P756L	HR_uc003xat.2_Missense_Mutation_p.P756L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	756							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GCAGAGAGAAGGACAAGGCAG	0.642													55	103					0	0	0.014410	0	0
PDLIM2	64236	broad.mit.edu	37	8	22442633	22442633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:22442633C>T	uc003xby.2	+	5	819	c.419C>T	c.(418-420)CCC>CTC	p.P140L	PDLIM2_uc003xbx.1_Missense_Mutation_p.P140L|PDLIM2_uc003xbz.2_Missense_Mutation_p.P140L|PDLIM2_uc003xca.2_Missense_Mutation_p.P140L|PDLIM2_uc003xcb.2_Missense_Mutation_p.P140L|PDLIM2_uc003xcc.1_Missense_Mutation_p.P140L	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	140	Ser-rich.					actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		TCACCACCACCCTCTAGCAGC	0.642													21	56					0	0	0.014323	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23069692	23069692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:23069692G>A	uc003xda.2	-	2	405	c.340C>T	c.(340-342)CAT>TAT	p.H114Y		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	114	TNFR-Cys 1.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		GATTGATCATGAAGTTTGATG	0.473													14	86					0	0	0.002450	0	0
SLC25A37	51312	broad.mit.edu	37	8	23428980	23428980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:23428980C>T	uc003xdo.2	+	4	782	c.629C>T	c.(628-630)CCC>CTC	p.P210L	SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_RNA|SLC25A37_uc003xdq.2_RNA|SLC25A37_uc003xdr.1_RNA|uc003xds.2_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	210	Helical; Name=4; (Potential).|Solcar 2.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		ATGAACATCCCCTTCCAGTCC	0.612													23	37					0	0	0.004656	0	0
ADAM28	10863	broad.mit.edu	37	8	24187570	24187570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:24187570C>T	uc003xdy.2	+	11	1128	c.1045C>T	c.(1045-1047)CAT>TAT	p.H349Y	ADAM28_uc003xdx.2_Missense_Mutation_p.H349Y|ADAM28_uc011kzz.1_Missense_Mutation_p.H116Y|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.H36Y	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	349	Peptidase M12B.|Extracellular (Potential).	Zinc; catalytic (By similarity).			proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TGGAATGTTTCATGACGACTA	0.458													35	61					0	0	0.003755	0	0
ADAM28	10863	broad.mit.edu	37	8	24196978	24196978	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:24196978G>A	uc003xdy.2	+	15	1651	c.1568_splice	c.e15-1	p.G523_splice	ADAM28_uc011laa.1_Splice_Site|ADAM28_uc010lua.2_Splice_Site_p.G210_splice	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1						proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCTGGTCCCAGGAACTGAGGT	0.418													7	13					0	0	0.003080	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256527	24256527	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:24256527G>A	uc003xdz.2	+	9	1123	c.903G>A	c.(901-903)AAG>AAA	p.K301K	ADAMDEC1_uc010lub.2_Silent_p.K222K|ADAMDEC1_uc011lab.1_Silent_p.K222K	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	301	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TGGGGAAAAAGATCCACGACC	0.512													10	31					0	0	0.010729	0	0
NEFM	4741	broad.mit.edu	37	8	24773142	24773142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:24773142G>A	uc003xed.3	+	2	1138	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K	NEFM_uc011lac.1_Missense_Mutation_p.E369K|NEFM_uc010lue.2_5'UTR	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	369	Rod.|Coil 2B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		GCTGGAAAATGAGCTTCGGGG	0.512													32	67					0	0	0.012213	0	0
DOCK5	80005	broad.mit.edu	37	8	25156535	25156535	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:25156535T>C	uc003xeg.2	+	8	819	c.682T>C	c.(682-684)TTC>CTC	p.F228L	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_5'UTR|DOCK5_uc003xef.2_Missense_Mutation_p.F228L	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	228						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		CTATGTGAACTTCAAGAACTT	0.488													5	26					0	0	0.000602	0	0
DOCK5	80005	broad.mit.edu	37	8	25156545	25156545	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:25156545T>C	uc003xeg.2	+	8	829	c.692T>C	c.(691-693)TTT>TCT	p.F231S	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_5'UTR|DOCK5_uc003xef.2_Missense_Mutation_p.F231S	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	231						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		TTCAAGAACTTTGTCTGCAAC	0.507													7	29					0	0	0.003080	0	0
EBF2	64641	broad.mit.edu	37	8	25718576	25718576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:25718576C>T	uc003xes.1	-	13	1348	c.1331G>A	c.(1330-1332)GGA>GAA	p.G444E	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	444					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TTGATTATTTCCTTGTGTTGA	0.473													45	78					0	0	0.009718	0	0
EBF2	64641	broad.mit.edu	37	8	25745471	25745471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:25745471C>T	uc003xes.1	-	9	786	c.769G>A	c.(769-771)GCC>ACC	p.A257T	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	257	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GGGCTAATGGCTTTGATGCAG	0.378													24	44					0	0	0.005443	0	0
CHRNA2	1135	broad.mit.edu	37	8	27319183	27319183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:27319183C>T	uc010lur.2	-	7	2162	c.1553G>A	c.(1552-1554)GGC>GAC	p.G518D	CHRNA2_uc011lal.1_Missense_Mutation_p.G503D|CHRNA2_uc010lus.2_Missense_Mutation_p.G320D	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	518	Helical; (Potential).					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	CAGAAAGAGGCCGATGGTCCC	0.567													37	75					0	0	0.006999	0	0
ESCO2	157570	broad.mit.edu	37	8	27634107	27634107	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:27634107C>T	uc003xgg.2	+	3	365	c.282C>T	c.(280-282)CTC>CTT	p.L94L	ESCO2_uc010luy.1_RNA|ESCO2_uc003xgh.2_Silent_p.L94L	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	94					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		AGTGGTACCTCAATCCACTGG	0.353									SC_Phocomelia_syndrome				22	30					0	0	0.010504	0	0
TEX15	56154	broad.mit.edu	37	8	30700975	30700975	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:30700975G>A	uc003xil.2	-	1	5559	c.5559C>T	c.(5557-5559)GAC>GAT	p.D1853D		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1853										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TCCACAGATGGTCCTGTTTTC	0.343													43	66					0	0	0.010771	0	0
WRN	7486	broad.mit.edu	37	8	31024698	31024698	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:31024698C>T	uc003xio.3	+	34	4931	c.4143C>T	c.(4141-4143)ATC>ATT	p.I1381I	WRN_uc010lvk.2_Silent_p.I848I	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1381					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		CTGAAGAGATCTGTTCAAGTT	0.373			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				17	26					0	0	0.004007	0	0
NRG1	3084	broad.mit.edu	37	8	31498200	31498200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:31498200C>T	uc003xip.2	+	1	933	c.700C>T	c.(700-702)CGG>TGG	p.R234W		NM_013962	NP_039256	Q02297	NRG1_HUMAN	neuregulin 1 isoform GGF2	Error:Variant_position_missing_in_Q02297_after_alignment					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		GGAGACGGGCCGGAACCTCAA	0.692													13	10					0	0	0.001855	0	0
NRG1	3084	broad.mit.edu	37	8	32621281	32621281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:32621281G>A	uc003xiv.2	+	12	1801	c.1284G>A	c.(1282-1284)ATG>ATA	p.M428I	NRG1_uc010lvo.2_3'UTR|NRG1_uc003xiu.2_Missense_Mutation_p.M433I|NRG1_uc003xiw.2_Missense_Mutation_p.M425I|NRG1_uc003xit.2_3'UTR|NRG1_uc010lvr.2_Missense_Mutation_p.M170I|NRG1_uc010lvs.2_Missense_Mutation_p.M170I|NRG1_uc010lvp.2_Missense_Mutation_p.M382I|NRG1_uc010lvq.2_Missense_Mutation_p.M365I|NRG1_uc011lbg.1_3'UTR|NRG1_uc011lbh.1_Missense_Mutation_p.M271I|NRG1_uc003xja.2_Missense_Mutation_p.M239I	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	428	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TGTCAGCCATGACCACCCCGG	0.542													32	52					0	0	0.004289	0	0
UNC5D	137970	broad.mit.edu	37	8	35648049	35648049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:35648049G>A	uc003xjr.1	+	17	3158	c.2830G>A	c.(2830-2832)GAC>AAC	p.D944N	UNC5D_uc003xjs.1_Missense_Mutation_p.D939N|UNC5D_uc003xju.1_Missense_Mutation_p.D520N	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	944	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TGATGAAGCCGACTTCAACTA	0.498													8	48					0	0	0.003080	0	0
BRF2	55290	broad.mit.edu	37	8	37702243	37702243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:37702243G>A	uc003xkk.2	-	4	1135	c.1025C>T	c.(1024-1026)TCC>TTC	p.S342F		NM_018310	NP_060780	Q9HAW0	BRF2_HUMAN	RNA polymerase III transcription initiation	342					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter|transcription initiation, DNA-dependent	nucleoplasm	protein binding|zinc ion binding				0		Lung NSC(58;0.118)|all_lung(54;0.195)	BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;1.81e-10)			TAAACCTAAGGAATTATTTCC	0.622													18	29					0	0	0.007413	0	0
HTRA4	203100	broad.mit.edu	37	8	38839222	38839222	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:38839222C>T	uc003xmj.2	+	6	1165	c.1050C>T	c.(1048-1050)TCC>TCT	p.S350S		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	350	Serine protease.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			ATGGAATCTCCTTTGCAATTC	0.428													36	84					0	0	0.005524	0	0
ADAM18	8749	broad.mit.edu	37	8	39506020	39506020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:39506020G>A	uc003xni.2	+	12	1204	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.E378K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	402	Disintegrin.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GGAATCCAATGAAGAATGTGA	0.323													14	22					0	0	0.003163	0	0
IKBKB	3551	broad.mit.edu	37	8	42174335	42174335	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:42174335C>T	uc003xow.1	+	11	1215	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	IKBKB_uc003xov.2_Silent_p.I346I|IKBKB_uc010lxh.1_Silent_p.I241I|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Silent_p.I123I|IKBKB_uc003xox.1_Silent_p.I67I|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Silent_p.I344I|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Silent_p.I287I	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	346					anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	ACACGGGCATCCCAGAGGAGG	0.577													17	30					0	0	0.004007	0	0
CHRNA6	8973	broad.mit.edu	37	8	42614235	42614235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:42614235C>T	uc003xpj.2	-	3	287	c.241G>A	c.(241-243)GAA>AAA	p.E81K	CHRNA6_uc011lcw.1_Intron	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	81	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AAATTGGTTTCCATGATCTGG	0.393													30	56					0	0	0.004289	0	0
HOOK3	84376	broad.mit.edu	37	8	42837793	42837793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:42837793G>A	uc003xpr.2	+	14	1587	c.1345G>A	c.(1345-1347)GAG>AAG	p.E449K	HOOK3_uc010lxq.1_Missense_Mutation_p.E449K	NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	449					cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			TGGAAGTCAGGAGTCTTCAGA	0.388			T	RET	papillary thyroid								25	37					0	0	0.007291	0	0
PRKDC	5591	broad.mit.edu	37	8	48746891	48746891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:48746891G>A	uc003xqi.2	-	60	8075	c.8018C>T	c.(8017-8019)CCC>CTC	p.P2673L	PRKDC_uc003xqj.2_Missense_Mutation_p.P2673L|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2673	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GTCAGATGAGGGACTGGTGTG	0.537								NHEJ					72	121					0	0	0.014410	0	0
PRKDC	5591	broad.mit.edu	37	8	48809737	48809737	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:48809737G>A	uc003xqi.2	-	30	3639	c.3582C>T	c.(3580-3582)TTC>TTT	p.F1194F	PRKDC_uc003xqj.2_Silent_p.F1194F|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1194					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				ATAAAGGAACGAATTTATAAA	0.368								NHEJ					71	138					0	0	0.014410	0	0
SNTG1	54212	broad.mit.edu	37	8	51449358	51449358	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:51449358G>T	uc010lxy.1	+	12	1041	c.670G>T	c.(670-672)GAT>TAT	p.D224Y	SNTG1_uc003xqs.1_Missense_Mutation_p.D224Y|SNTG1_uc010lxz.1_Missense_Mutation_p.D224Y|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	224					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				GCCCGGCACAGATTTGAGTCG	0.473													59	115					6.00099e-30	6.66382e-30	0.014410	1	0
SNTG1	54212	broad.mit.edu	37	8	51617288	51617288	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:51617288C>T	uc010lxy.1	+	17	1538	c.1167C>T	c.(1165-1167)ACC>ACT	p.T389T	SNTG1_uc003xqs.1_Silent_p.T389T|SNTG1_uc010lxz.1_Silent_p.T389T|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	389	PH.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				AGACAGCAACCTTTCTAGAAG	0.522													18	23					0	0	0.007413	0	0
PXDNL	137902	broad.mit.edu	37	8	52359682	52359682	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:52359682G>A	uc003xqu.3	-	12	1508	c.1407C>T	c.(1405-1407)TCC>TCT	p.S469S		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	469	Ig-like C2-type 3.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AAGTGCCAGAGGAGAGAACTG	0.512													53	89					0	0	0.014410	0	0
ST18	9705	broad.mit.edu	37	8	53062531	53062531	+	Missense_Mutation	SNP	C	T	T	rs144486751		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:53062531C>T	uc003xqz.2	-	11	1969	c.1813G>A	c.(1813-1815)GAA>AAA	p.E605K	ST18_uc011ldq.1_Missense_Mutation_p.E252K|ST18_uc011ldr.1_Missense_Mutation_p.E570K|ST18_uc011lds.1_Missense_Mutation_p.E510K|ST18_uc003xra.2_Missense_Mutation_p.E605K|ST18_uc003xrb.2_Missense_Mutation_p.E605K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	605						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ACTTCTATTTCGGCTCCCTGG	0.398													25	67					0	0	0.003954	0	0
ST18	9705	broad.mit.edu	37	8	53071457	53071457	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:53071457C>T	uc003xqz.2	-	10	1962	c.1806_splice	c.e10+1	p.K602_splice	ST18_uc011ldq.1_Splice_Site_p.K249_splice|ST18_uc011ldr.1_Splice_Site_p.K567_splice|ST18_uc011lds.1_Splice_Site_p.K507_splice|ST18_uc003xra.2_Splice_Site_p.K602_splice|ST18_uc003xrb.2_Splice_Site_p.K602_splice	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GACTGGCCTACCTTGGCATGC	0.557													54	80					0	0	0.014410	0	0
ST18	9705	broad.mit.edu	37	8	53076606	53076606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:53076606G>A	uc003xqz.2	-	8	1496	c.1340C>T	c.(1339-1341)TCC>TTC	p.S447F	ST18_uc011ldq.1_Missense_Mutation_p.S94F|ST18_uc011ldr.1_Missense_Mutation_p.S412F|ST18_uc011lds.1_Missense_Mutation_p.S352F|ST18_uc003xra.2_Missense_Mutation_p.S447F|ST18_uc003xrb.2_Missense_Mutation_p.S447F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	447						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTTATCCTGGGACATTGCCAA	0.413													52	86					0	0	0.014410	0	0
RB1CC1	9821	broad.mit.edu	37	8	53555124	53555124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:53555124C>T	uc003xre.3	-	18	4682	c.4124G>A	c.(4123-4125)CGA>CAA	p.R1375Q	RB1CC1_uc003xrf.3_Missense_Mutation_p.R1375Q	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	1375	Potential.				autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				CAAACGAGCTCGATCTTCAGA	0.368													21	34					0	0	0.008871	0	0
OPRK1	4986	broad.mit.edu	37	8	54147566	54147566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:54147566C>T	uc003xrh.1	-	2	738	c.363G>A	c.(361-363)ATG>ATA	p.M121I	OPRK1_uc003xri.1_Missense_Mutation_p.M121I|OPRK1_uc010lyc.1_Missense_Mutation_p.M32I	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	121	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GCCAGGAATTCATCAAGTAGA	0.423													29	59					0	0	0.009535	0	0
ATP6V1H	51606	broad.mit.edu	37	8	54628550	54628550	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:54628550G>C	uc003xrl.2	-	14	1578	c.1426C>G	c.(1426-1428)CCC>GCC	p.P476A	ATP6V1H_uc003xrk.2_Missense_Mutation_p.P436A|ATP6V1H_uc003xrm.2_Missense_Mutation_p.P476A|ATP6V1H_uc003xrn.2_Missense_Mutation_p.P458A|ATP6V1H_uc011ldv.1_Missense_Mutation_p.P396A|ATP6V1H_uc010lyd.2_Missense_Mutation_p.P412A	NM_213620	NP_998785	Q9UI12	VATH_HUMAN	ATPase, H+ transporting, lysosomal 50/57kDa, V1	476					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|endocytosis|insulin receptor signaling pathway|interspecies interaction between organisms|regulation of defense response to virus by virus|transferrin transport|vacuolar acidification|viral reproduction	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase, V1 domain	enzyme regulator activity|protein binding|proton-transporting ATPase activity, rotational mechanism				0		all_epithelial(80;0.0487)|Lung NSC(129;0.109)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;2.79e-06)|Epithelial(17;0.000629)|all cancers(17;0.00359)			GCGGTCTGGGGCTGCTCGGAC	0.493													20	29					0	0	0.012319	0	0
RP1	6101	broad.mit.edu	37	8	55533846	55533846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:55533846C>T	uc003xsd.1	+	2	468	c.320C>T	c.(319-321)TCC>TTC	p.S107F	RP1_uc011ldy.1_Missense_Mutation_p.S107F	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	107	Doublecortin 1.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TACCTATGTTCCCACGGCAGG	0.677													28	53					0	0	0.009535	0	0
RP1	6101	broad.mit.edu	37	8	55538364	55538364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:55538364G>A	uc003xsd.1	+	4	2070	c.1922G>A	c.(1921-1923)AGA>AAA	p.R641K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	641					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTCACTGCAAGAATTGACAGA	0.353													22	29					0	0	0.014323	0	0
RP1	6101	broad.mit.edu	37	8	55538781	55538781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:55538781G>A	uc003xsd.1	+	4	2487	c.2339G>A	c.(2338-2340)AGA>AAA	p.R780K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	780					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGAAAATCTAGATCACTAAAT	0.294													17	48					0	0	0.006122	0	0
RP1	6101	broad.mit.edu	37	8	55541555	55541555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:55541555G>A	uc003xsd.1	+	4	5261	c.5113G>A	c.(5113-5115)GAT>AAT	p.D1705N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1705					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGATAAGTGTGATGTTAGTGC	0.408													31	47					0	0	0.013726	0	0
RP1	6101	broad.mit.edu	37	8	55542352	55542352	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:55542352G>A	uc003xsd.1	+	4	6058	c.5910G>A	c.(5908-5910)GAG>GAA	p.E1970E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1970					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCAGGGAAGAGAACAATAAAG	0.299													23	26					0	0	0.012319	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228854	57228854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:57228854G>A	uc003xsy.1	-	2	691	c.53C>T	c.(52-54)TCA>TTA	p.S18L	SDR16C5_uc010lyk.1_Missense_Mutation_p.S18L|SDR16C5_uc010lyl.1_Missense_Mutation_p.S18L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	18	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACTAAACAGTGATTTTCCTAA	0.418													18	50					0	0	0.010504	0	0
CLVS1	157807	broad.mit.edu	37	8	62212398	62212398	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:62212398C>T	uc003xuh.2	+	2	336	c.12C>T	c.(10-12)GTC>GTT	p.V4V	CLVS1_uc003xug.2_Silent_p.V4V|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Silent_p.V4V	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	4					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TGGGACCAGTCTCTCTTCTTC	0.463													13	28					0	0	0.001855	0	0
ARMC1	55156	broad.mit.edu	37	8	66516710	66516710	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:66516710G>A	uc003xvl.2	-	7	1003	c.768C>T	c.(766-768)TCC>TCT	p.S256S	ARMC1_uc011leo.1_Silent_p.S154S	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	256					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			AGCCGACCCGGGACACCGCTT	0.498													27	55					0	0	0.006320	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66989064	66989064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:66989064G>A	uc003xvs.1	+	4	580	c.289G>A	c.(289-291)GAA>AAA	p.E97K	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	97					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			GTTTGGAGACGAAAACGTTAA	0.448													33	81					0	0	0.003271	0	0
C8orf44	56260	broad.mit.edu	37	8	67592026	67592026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:67592026C>T	uc003xwo.1	+	3	470	c.317C>T	c.(316-318)TCT>TTT	p.S106F	SGK3_uc003xwp.2_5'UTR|C8orf44_uc003xwq.1_Missense_Mutation_p.S106F	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	106											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			CAAAAGGGGTCTTTGGCCATC	0.418													31	45					0	0	0.010818	0	0
PTTG3P	26255	broad.mit.edu	37	8	67680207	67680207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:67680207C>T	uc011leu.1	-	1	34	c.34G>A	c.(34-36)GAA>AAA	p.E12K	SGK3_uc003xwp.2_Intron|SGK3_uc003xwr.2_Intron	NR_002734				RecName: Full=Securin-3; AltName: Full=Pituitary tumor transforming gene 3 protein;          Short=hPTTG3; AltName: Full=rcPTTG1;												0						CCTGGTTCTTCGTTTTCCTTA	0.358													12	18					0	0	0.002450	0	0
CPA6	57094	broad.mit.edu	37	8	68346349	68346349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:68346349G>A	uc003xxq.3	-	9	1221	c.965C>T	c.(964-966)TCC>TTC	p.S322F	CPA6_uc003xxr.3_Intron	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	322					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TGCATGAAAGGAGAGATAAGC	0.413													33	46					0	0	0.013726	0	0
C8orf34	116328	broad.mit.edu	37	8	69552661	69552661	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:69552661G>T	uc010lyz.2	+	8	947	c.898G>T	c.(898-900)GGG>TGG	p.G300W	C8orf34_uc003xyb.2_Missense_Mutation_p.G275W	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	300					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			GGTACCTTCTGGGAGCAAATT	0.413													13	66					4.7546e-09	5.22933e-09	0.004007	1	0
SLCO5A1	81796	broad.mit.edu	37	8	70585187	70585187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:70585187G>A	uc003xyl.2	-	10	3171	c.2464C>T	c.(2464-2466)CCG>TCG	p.P822S	SLCO5A1_uc010lzb.2_Missense_Mutation_p.P767S|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	822						integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			AAGGGCCCCGGGTAGGTCTGT	0.592													46	68					0	0	0.014410	0	0
NCOA2	10499	broad.mit.edu	37	8	71039106	71039106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:71039106C>T	uc003xyn.1	-	19	4020	c.3858G>A	c.(3856-3858)ATG>ATA	p.M1286I	NCOA2_uc011lfb.1_Missense_Mutation_p.M374I	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1286					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GAGGGTTGCTCATAGTTGCTG	0.488			T	RUNXBP2	AML								17	35					0	0	0.007413	0	0
C8orf84	157869	broad.mit.edu	37	8	74005100	74005100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:74005100C>T	uc003xzf.2	-	1	408	c.203G>A	c.(202-204)AGG>AAG	p.R68K		NM_153225	NP_694957	Q8IVN8	RPESP_HUMAN	RPE-spondin precursor	68	SMB.				immune response	extracellular region	polysaccharide binding|scavenger receptor activity				0						TGGGCACGCCCTGTCGTAGTC	0.687													14	21					0	0	0.002450	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616716	77616716	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:77616716C>T	uc003yav.2	+	2	780	c.393C>T	c.(391-393)ATC>ATT	p.I131I	ZFHX4_uc003yat.1_Silent_p.I131I|ZFHX4_uc003yau.1_Silent_p.I131I|ZFHX4_uc003yaw.1_Silent_p.I131I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	131						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGGGGAGATCGTTTACCAGC	0.493										HNSCC(33;0.089)			25	57					0	0	0.003954	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763421	77763421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:77763421C>T	uc003yav.2	+	10	4516	c.4129C>T	c.(4129-4131)CGG>TGG	p.R1377W	ZFHX4_uc003yau.1_Missense_Mutation_p.R1422W|ZFHX4_uc003yaw.1_Missense_Mutation_p.R1377W	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1377						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCATGCAATTCGGGCTGCGAC	0.458										HNSCC(33;0.089)			11	20					0	0	0.008291	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764324	77764324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:77764324C>T	uc003yav.2	+	10	5419	c.5032C>T	c.(5032-5034)CCT>TCT	p.P1678S	ZFHX4_uc003yau.1_Missense_Mutation_p.P1723S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1678S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1678	Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCTCATTTTCCTATGACCCC	0.473										HNSCC(33;0.089)			23	59					0	0	0.002780	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766990	77766990	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:77766990G>A	uc003yav.2	+	10	8085	c.7698G>A	c.(7696-7698)ACG>ACA	p.T2566T	ZFHX4_uc003yau.1_Silent_p.T2611T|ZFHX4_uc003yaw.1_Silent_p.T2566T	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2566	Homeobox 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGAGAACCACGATCACCCCGG	0.423										HNSCC(33;0.089)			14	22					0	0	0.003163	0	0
ZNF704	619279	broad.mit.edu	37	8	81605253	81605253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:81605253G>A	uc003yby.1	-	3	543	c.311C>T	c.(310-312)CCC>CTC	p.P104L		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	104						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			CGGCCGCACGGGAGGACTTCG	0.522													21	50					0	0	0.002780	0	0
REXO1L1	254958	broad.mit.edu	37	8	86573843	86573843	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:86573843C>T	uc011lfw.1	-	1	1426	c.1380G>A	c.(1378-1380)CAG>CAA	p.Q460Q		NM_172239	NP_758439	Q8IX06	GOR_HUMAN	exonuclease GOR	628						cytoplasm|nucleus	exonuclease activity|nucleic acid binding				0						CCTGGATGATCTGTGCCAGGT	0.647													4	71					0	0	0.009096	0	0
SLC7A13	157724	broad.mit.edu	37	8	87229699	87229699	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:87229699C>T	uc003ydq.1	-	3	1277	c.1179G>A	c.(1177-1179)AAG>AAA	p.K393K	SLC7A13_uc003ydr.1_Silent_p.K384K	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	393	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						CCAATTTTACCTTATAAGGTA	0.289													10	26					0	0	0.006122	0	0
SLC7A13	157724	broad.mit.edu	37	8	87241867	87241867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:87241867C>T	uc003ydq.1	-	1	738	c.640G>A	c.(640-642)GGA>AGA	p.G214R	SLC7A13_uc003ydr.1_Missense_Mutation_p.G214R	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	214	Helical; Name=6; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						GCAAAATATCCTTGGAAGATG	0.368													41	46					0	0	0.009718	0	0
SLC26A7	115111	broad.mit.edu	37	8	92378858	92378858	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:92378858C>T	uc003yex.2	+	15	1817	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.F513F|SLC26A7_uc003yfa.2_Silent_p.F513F	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	513	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			CGCTTGTTTTCCTGAATGCAA	0.353													19	55					0	0	0.007413	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017356	93017356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:93017356C>T	uc003yfd.2	-	5	812	c.728G>A	c.(727-729)CGA>CAA	p.R243Q	RUNX1T1_uc003yfc.1_Missense_Mutation_p.R216Q|RUNX1T1_uc003yfe.1_Missense_Mutation_p.R206Q|RUNX1T1_uc010mao.2_Missense_Mutation_p.R216Q|RUNX1T1_uc011lgi.1_Missense_Mutation_p.R254Q|RUNX1T1_uc003yfb.1_Missense_Mutation_p.R206Q|RUNX1T1_uc003yff.1_Missense_Mutation_p.R206Q	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	243					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GTCTGGAGTTCGCCTCTTCCC	0.522													33	94					0	0	0.004289	0	0
TMEM67	91147	broad.mit.edu	37	8	94828614	94828614	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:94828614C>T	uc011lgk.1	+	28	2993	c.2922C>T	c.(2920-2922)ATC>ATT	p.I974I	TMEM67_uc003yga.3_Silent_p.I893I|TMEM67_uc011lgl.1_Silent_p.I373I	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	974					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			TTAGATATATCCGTAATACAG	0.259													28	43					0	0	0.008361	0	0
PLEKHF2	79666	broad.mit.edu	37	8	96166839	96166839	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:96166839G>A	uc003yhn.1	+	2	814	c.567G>A	c.(565-567)AAG>AAA	p.K189K		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	189	FYVE-type.					transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					GCTCTGAAAAGAGATTTCTTC	0.498													320	479					0	0	0.014410	0	0
TSPYL5	85453	broad.mit.edu	37	8	98288900	98288900	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:98288900T>A	uc003yhy.2	-	1	1277	c.1173A>T	c.(1171-1173)AAA>AAT	p.K391N		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	391					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					TTTCCTTTCCTTTCTCTACAC	0.498													82	144					0	0	0.014410	0	0
C8orf47	203111	broad.mit.edu	37	8	99101565	99101565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:99101565G>A	uc003yih.1	+	2	468	c.320G>A	c.(319-321)GGA>GAA	p.G107E		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	107											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			ACTCAGCCTGGAGAGGGACTG	0.577													30	56					0	0	0.008361	0	0
POP1	10940	broad.mit.edu	37	8	99142337	99142337	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:99142337C>T	uc003yij.3	+	5	718	c.618C>T	c.(616-618)ATC>ATT	p.I206I	POP1_uc011lgv.1_Silent_p.I206I|POP1_uc003yik.2_Silent_p.I206I	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	206					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			AAACTCACATCTGGCACGCCA	0.463													14	38					0	0	0.002450	0	0
VPS13B	157680	broad.mit.edu	37	8	100454726	100454726	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:100454726G>A	uc003yiv.2	+	23	3419	c.3308G>A	c.(3307-3309)TGG>TAG	p.W1103*	VPS13B_uc003yiw.2_Nonsense_Mutation_p.W1103*|VPS13B_uc003yiu.1_Nonsense_Mutation_p.W1103*|VPS13B_uc003yix.1_Nonsense_Mutation_p.W573*	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1103					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GTAAGAAGTTGGTACCATGGA	0.433													27	44					0	0	0.003954	0	0
VPS13B	157680	broad.mit.edu	37	8	100847802	100847802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:100847802C>T	uc003yiv.2	+	54	9964	c.9853C>T	c.(9853-9855)CCC>TCC	p.P3285S	VPS13B_uc003yiw.2_Missense_Mutation_p.P3260S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3285					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CAAAAAAATTCCCTCCGAGTG	0.388													32	59					0	0	0.013726	0	0
UBR5	51366	broad.mit.edu	37	8	103354800	103354800	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:103354800A>G	uc003ykr.1	-	9	1032	c.999T>C	c.(997-999)GGT>GGC	p.G333G	UBR5_uc003yks.1_Silent_p.G333G	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	333					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TGCTGGTAGAACCCCTTTCAT	0.458													33	79					0	0	0.012213	0	0
RIMS2	9699	broad.mit.edu	37	8	104943551	104943551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:104943551G>A	uc003yls.2	+	10	1880	c.1639G>A	c.(1639-1641)GAT>AAT	p.D547N	RIMS2_uc003ylp.2_Missense_Mutation_p.D769N|RIMS2_uc003ylw.2_Missense_Mutation_p.D561N|RIMS2_uc003ylq.2_Missense_Mutation_p.D561N|RIMS2_uc003ylr.2_Missense_Mutation_p.D608N|RIMS2_uc003ylt.2_Missense_Mutation_p.D154N	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	831	C2 1.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GGGAGCAAAAGATCTCCCTTC	0.323										HNSCC(12;0.0054)			28	53					0	0	0.009535	0	0
DPYS	1807	broad.mit.edu	37	8	105456519	105456519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:105456519C>T	uc003yly.3	-	4	879	c.750G>A	c.(748-750)ATG>ATA	p.M250I		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	250					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CAGACTTGCTCATCACATGCA	0.517													11	26					0	0	0.013537	0	0
DPYS	1807	broad.mit.edu	37	8	105459710	105459710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:105459710G>A	uc003yly.3	-	3	574	c.445C>T	c.(445-447)CTT>TTT	p.L149F		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	149					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TCTTGCACAAGGATTTTCATT	0.363													6	40					0	0	0.001168	0	0
LRP12	29967	broad.mit.edu	37	8	105511596	105511596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:105511596G>A	uc003yma.2	-	4	519	c.424C>T	c.(424-426)CAT>TAT	p.H142Y	LRP12_uc003ymb.2_Missense_Mutation_p.H123Y	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	142	Extracellular (Potential).|CUB 1.				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TCATCCGAATGAAACCTAATC	0.348													35	71					0	0	0.005524	0	0
ZFPM2	23414	broad.mit.edu	37	8	106646513	106646513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:106646513C>T	uc003ymd.2	+	5	483	c.460C>T	c.(460-462)CCC>TCC	p.P154S		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	154					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GACTGCTGGTCCCAAGTGGTT	0.423													5	20					0	0	0.001168	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815257	106815257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:106815257C>T	uc003ymd.2	+	8	2970	c.2947C>T	c.(2947-2949)CCA>TCA	p.P983S	ZFPM2_uc011lhs.1_Missense_Mutation_p.P714S	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	983					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCAGCTTTCTCCATATTATGG	0.388													8	9					0	0	0.004482	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815487	106815487	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:106815487G>A	uc003ymd.2	+	8	3200	c.3177G>A	c.(3175-3177)CAG>CAA	p.Q1059Q	ZFPM2_uc011lhs.1_Silent_p.Q790Q	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1059					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCAACCCACAGCAAGAGAACA	0.478													9	25					0	0	0.006214	0	0
ANGPT1	284	broad.mit.edu	37	8	108359231	108359231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:108359231C>T	uc003ymn.2	-	2	860	c.392G>A	c.(391-393)GGA>GAA	p.G131E	ANGPT1_uc003ymo.2_Missense_Mutation_p.G131E	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	131					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			GAGGCTGGTTCCTATCTCCAG	0.512													42	75					0	0	0.007835	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110406674	110406674	+	Silent	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:110406674T>C	uc003yne.2	+	10	875	c.771T>C	c.(769-771)GTT>GTC	p.V257V		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	257	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CATATTTTGTTTCTTCTCTCA	0.318										HNSCC(38;0.096)			4	2					0	0	0.000602	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110465061	110465061	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:110465061C>T	uc003yne.2	+	43	6726	c.6622C>T	c.(6622-6624)CTG>TTG	p.L2208L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2208	Extracellular (Potential).|G8 1.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GACCATTCTGCTGGATCAAAG	0.398										HNSCC(38;0.096)			4	5					0	0	0.009096	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110468544	110468544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:110468544G>A	uc003yne.2	+	46	7032	c.6928G>A	c.(6928-6930)GAA>AAA	p.E2310K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2310	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AAAGGCAGGGGAAAGAATTTT	0.413										HNSCC(38;0.096)			11	21					0	0	0.008291	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477426	110477426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:110477426C>T	uc003yne.2	+	49	8469	c.8365C>T	c.(8365-8367)CGC>TGC	p.R2789C		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2789	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGCTGGCTTTCGCTGGGAACA	0.393										HNSCC(38;0.096)			31	47					0	0	0.003271	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110487398	110487398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:110487398G>A	uc003yne.2	+	51	8761	c.8657G>A	c.(8656-8658)TGG>TAG	p.W2886*		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2886	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATGTCTGGATGGATGGCTCTG	0.348										HNSCC(38;0.096)			24	50					0	0	0.004656	0	0
CSMD3	114788	broad.mit.edu	37	8	113347561	113347561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:113347561G>A	uc003ynu.2	-	45	7321	c.7162C>T	c.(7162-7164)CAC>TAC	p.H2388Y	CSMD3_uc003yns.2_Missense_Mutation_p.H1590Y|CSMD3_uc003ynt.2_Missense_Mutation_p.H2348Y|CSMD3_uc011lhx.1_Missense_Mutation_p.H2284Y|CSMD3_uc003ynw.1_Missense_Mutation_p.H99Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2388	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TACCAACCGTGATAACTGAGC	0.338										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			11	27					0	0	0.013537	0	0
CSMD3	114788	broad.mit.edu	37	8	113960050	113960050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:113960050C>T	uc003ynu.2	-	9	1636	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K	CSMD3_uc003ynt.2_Missense_Mutation_p.E453K|CSMD3_uc011lhx.1_Missense_Mutation_p.E389K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	493	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTCCCATTTTCTGGTTCTCCT	0.299										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			18	45					0	0	0.012319	0	0
RAD21	5885	broad.mit.edu	37	8	117874126	117874126	+	Silent	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:117874126A>G	uc003yod.2	-	4	616	c.328T>C	c.(328-330)TTA>CTA	p.L110L		NM_006265	NP_006256	O60216	RAD21_HUMAN	RAD21 homolog	110					apoptosis|cell division|chromosome segregation|double-strand break repair|mitotic metaphase/anaphase transition|mitotic prometaphase|protein localization to chromatin|reciprocal meiotic recombination|regulation of transcription from RNA polymerase II promoter	chromosome, centromeric region|cohesin complex|nuclear chromosome|nucleoplasm	protein binding			lung(1)|skin(1)	2	all_cancers(13;1.21e-21)|Lung NSC(37;0.000134)|Ovarian(258;0.0172)					TCTTCAGGTAAAGTAATGGCA	0.368													48	102					0	0	0.014410	0	0
DEPDC6	64798	broad.mit.edu	37	8	121019092	121019092	+	Missense_Mutation	SNP	C	T	T	rs147092773		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:121019092C>T	uc003yow.3	+	7	1161	c.974C>T	c.(973-975)CCG>CTG	p.P325L	DEPDC6_uc011lid.1_Missense_Mutation_p.P224L	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	325					intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CCCGGGGCTCCGTATGCAAGG	0.507													14	26					0	0	0.003163	0	0
ADCY8	114	broad.mit.edu	37	8	131916183	131916183	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:131916183G>A	uc003ytd.3	-	7	2002	c.1746C>T	c.(1744-1746)ATC>ATT	p.I582I	ADCY8_uc010mds.2_Silent_p.I582I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	582	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGTAAGTTTCGATATTATGCT	0.478										HNSCC(32;0.087)			32	79					0	0	0.010818	0	0
KCNQ3	3786	broad.mit.edu	37	8	133150230	133150230	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:133150230G>A	uc003ytj.2	-	12	1827	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	KCNQ3_uc010mdt.2_Silent_p.F534F	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	534					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			AAGTCTCCTTGAATTTTTTTT	0.453													52	57					0	0	0.014410	0	0
KCNQ3	3786	broad.mit.edu	37	8	133152399	133152399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:133152399C>T	uc003ytj.2	-	11	1717	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K	KCNQ3_uc010mdt.2_Missense_Mutation_p.E498K	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	498					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CCCCTGTCTTCCGCCATGGGG	0.612													11	35					0	0	0.013537	0	0
TG	7038	broad.mit.edu	37	8	134042139	134042139	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:134042139C>T	uc003ytw.2	+	41	7151	c.7110C>T	c.(7108-7110)ATC>ATT	p.I2370I	TG_uc010mdw.2_Silent_p.I1129I|TG_uc011ljb.1_Silent_p.I739I|TG_uc011ljc.1_Silent_p.I503I	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2370					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGACCCACATCCGAGGATTTG	0.642													8	31					0	0	0.004482	0	0
KHDRBS3	10656	broad.mit.edu	37	8	136594241	136594241	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:136594241C>T	uc003yuv.2	+	6	1126	c.732C>T	c.(730-732)CCC>CCT	p.P244P	KHDRBS3_uc003yuw.2_Silent_p.P244P|KHDRBS3_uc010mek.2_RNA	NM_006558	NP_006549	O75525	KHDR3_HUMAN	KH domain containing, RNA binding, signal	244	Interaction with SIAH1.			Missing: Complete loss of SIAH1-mediated degradation.	regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	SH3 domain binding			ovary(2)	2	all_epithelial(106;2.85e-16)|all_neural(2;2.72e-06)|Lung NSC(106;3.95e-06)|all_lung(105;1.11e-05)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.247)			TTCTCACTCCCAGAGCAAGAG	0.587													11	76					0	0	0.008291	0	0
FAM135B	51059	broad.mit.edu	37	8	139164194	139164194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:139164194G>A	uc003yuy.2	-	13	2695	c.2524C>T	c.(2524-2526)CCC>TCC	p.P842S	FAM135B_uc003yux.2_Missense_Mutation_p.P743S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.P404S|FAM135B_uc003yvb.2_Missense_Mutation_p.P404S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	842										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ATGTATCCGGGGCCCTGCTGG	0.517										HNSCC(54;0.14)			32	77					0	0	0.012213	0	0
FAM135B	51059	broad.mit.edu	37	8	139164304	139164304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:139164304C>T	uc003yuy.2	-	13	2585	c.2414G>A	c.(2413-2415)AGC>AAC	p.S805N	FAM135B_uc003yux.2_Missense_Mutation_p.S706N|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.S367N|FAM135B_uc003yvb.2_Missense_Mutation_p.S367N	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	805										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGAACCTTGGCTCTTGCTGTG	0.522										HNSCC(54;0.14)			21	73					0	0	0.008871	0	0
FAM135B	51059	broad.mit.edu	37	8	139255192	139255192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:139255192G>A	uc003yuy.2	-	7	833	c.662C>T	c.(661-663)TCC>TTC	p.S221F	FAM135B_uc003yux.2_Missense_Mutation_p.S122F|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	221										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TACCTCTGAGGAAGTCGGCTT	0.473										HNSCC(54;0.14)			19	63					0	0	0.003954	0	0
FAM135B	51059	broad.mit.edu	37	8	139380195	139380195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:139380195G>A	uc003yuy.2	-	2	203	c.32C>T	c.(31-33)TCG>TTG	p.S11L	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	11										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TAGCTCTACCGAAAACTCAAC	0.303										HNSCC(54;0.14)			38	83					0	0	0.010771	0	0
FLJ43860	389690	broad.mit.edu	37	8	142444090	142444090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:142444090G>A	uc003ywi.2	-	32	4006	c.3925C>T	c.(3925-3927)CTC>TTC	p.L1309F	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1309							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			ACCTTCTGGAGGAAGGAGAGC	0.627													5	19					0	0	0.000602	0	0
BAI1	575	broad.mit.edu	37	8	143562968	143562968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:143562968G>A	uc003ywm.2	+	10	2209	c.2026G>A	c.(2026-2028)GGG>AGG	p.G676R		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	676	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CTCTCAGGACGGGACCAGCTA	0.627													6	10					0	0	0.001984	0	0
CYP11B1	1584	broad.mit.edu	37	8	143956467	143956468	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:143956467_143956468CC>AT	uc003yxi.2	-	8	1310_1311	c.1303_1304GG>AT	c.(1303-1305)GGC>ATC	p.G435I	CYP11B1_uc010mex.2_Missense_Mutation_p.G134I|CYP11B1_uc003yxh.2_Intron|CYP11B1_uc003yxj.2_Intron|CYP11B1_uc010mey.2_Missense_Mutation_p.G506I	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	435					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GAAGTTCCTGCCGGAGCCCCTG	0.634									Familial_Hyperaldosteronism_type_I				67	59					0	0	0.004672	0	0
FAM83H	286077	broad.mit.edu	37	8	144812352	144812352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:144812352G>A	uc003yzk.2	-	2	470	c.401C>T	c.(400-402)CCC>CTC	p.P134L	FAM83H_uc010mfk.1_5'Flank	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	134					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CTTGATACTGGGGCTGTCGGG	0.667													12	14					0	0	0.013537	0	0
PPP1R16A	84988	broad.mit.edu	37	8	145726099	145726100	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:145726099_145726100GG>AA	uc003zdd.2	+	8	1775_1776	c.862_863GG>AA	c.(862-864)GGG>AAG	p.G288K	uc003zde.1_5'Flank|PPP1R16A_uc003zdf.2_Missense_Mutation_p.G288K|GPT_uc011lli.1_5'Flank	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	288	ANK 5.					plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CGTGGCGCACGGGGCCGACCTG	0.723													22	24					0	0	0.004672	0	0
RECQL4	9401	broad.mit.edu	37	8	145741611	145741611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:145741611G>A	uc003zdj.2	-	5	924	c.892C>T	c.(892-894)CCT>TCT	p.P298S	LRRC14_uc003zdk.1_5'Flank|LRRC14_uc003zdl.1_5'Flank	NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	298					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			TCCCCTGGAGGGTCTTCCTCA	0.662			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				16	31					0	0	0.004990	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145781006	145781006	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:145781006G>A	uc003zdt.1	-	5	1089	c.534C>T	c.(532-534)TTC>TTT	p.F178F	ARHGAP39_uc011llk.1_Silent_p.F178F|ARHGAP39_uc003zds.1_Silent_p.F178F	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	178					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CCTTCTCAAGGAACACTCCTG	0.453													40	108					0	0	0.010771	0	0
ZNF251	90987	broad.mit.edu	37	8	145948764	145948764	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:145948764G>T	uc003zdv.3	-	5	537	c.281C>A	c.(280-282)TCT>TAT	p.S94Y		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		CCCAACCTCAGAATCTGTTAA	0.254													4	13					0.00024832	0.000271607	0.009096	1	0
GLIS3	169792	broad.mit.edu	37	9	4285987	4285988	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:4285987_4285988GG>AA	uc003zii.1	-	2	1151_1152	c.438_439CC>TT	c.(436-441)CTCCCC>CTTTCC	p.P147S	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		ATGGGATGGGGGAGAAAAAAAT	0.406													17	8					0	0	0.004672	0	0
INSL6	11172	broad.mit.edu	37	9	5164204	5164204	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:5164204C>T	uc003zix.2	-	2	367	c.351G>A	c.(349-351)AAG>AAA	p.K117K		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	117						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		CCTTTTTATCCTTATACTCAG	0.333													26	30					0	0	0.012213	0	0
RLN2	6019	broad.mit.edu	37	9	5300348	5300348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:5300348G>A	uc003zja.1	-	2	308	c.308C>T	c.(307-309)TCT>TTT	p.S103F	RLN2_uc003ziz.1_3'UTR	NM_134441	NP_604390	P04090	REL2_HUMAN	relaxin 2 isoform 1 preproprotein	103					female pregnancy	extracellular region	hormone activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.0987)		CTGCATCTCAGACAGGGTTAA	0.368													34	32					0	0	0.013726	0	0
PTPRD	5789	broad.mit.edu	37	9	8389246	8389246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:8389246C>T	uc003zkk.2	-	36	5083	c.4372G>A	c.(4372-4374)GAA>AAA	p.E1458K	PTPRD_uc003zkp.2_Missense_Mutation_p.E1052K|PTPRD_uc003zkq.2_Missense_Mutation_p.E1051K|PTPRD_uc003zkr.2_Missense_Mutation_p.E1042K|PTPRD_uc003zks.2_Missense_Mutation_p.E1051K|PTPRD_uc003zkl.2_Missense_Mutation_p.E1449K|PTPRD_uc003zkm.2_Missense_Mutation_p.E1445K|PTPRD_uc003zkn.2_Missense_Mutation_p.E1047K|PTPRD_uc003zko.2_Missense_Mutation_p.E1048K	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1458	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GATCTTTCTTCTAGTTTTGTC	0.388										TSP Lung(15;0.13)			45	25					0	0	0.014410	0	0
PTPRD	5789	broad.mit.edu	37	9	8485270	8485270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:8485270G>A	uc003zkk.2	-	28	3821	c.3110C>T	c.(3109-3111)TCT>TTT	p.S1037F	PTPRD_uc003zkp.2_Missense_Mutation_p.S626F|PTPRD_uc003zkq.2_Missense_Mutation_p.S626F|PTPRD_uc003zkr.2_Missense_Mutation_p.S621F|PTPRD_uc003zks.2_Missense_Mutation_p.S616F|PTPRD_uc003zkl.2_Missense_Mutation_p.S1028F|PTPRD_uc003zkm.2_Missense_Mutation_p.S1024F|PTPRD_uc003zkn.2_Missense_Mutation_p.S626F|PTPRD_uc003zko.2_Missense_Mutation_p.S623F	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1037	Fibronectin type-III 8.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATCTCCCAAGACAGCAACAC	0.343										TSP Lung(15;0.13)			16	11					0	0	0.008871	0	0
PTPRD	5789	broad.mit.edu	37	9	8499706	8499706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:8499706C>T	uc003zkk.2	-	24	2974	c.2263G>A	c.(2263-2265)GAA>AAA	p.E755K	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.E755K|PTPRD_uc003zkm.2_Missense_Mutation_p.E742K|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	755	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCACCATTTTCCATCCTCACA	0.458										TSP Lung(15;0.13)			43	41					0	0	0.014410	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18639275	18639275	+	Missense_Mutation	SNP	G	A	A	rs143136084	by1000genomes	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:18639275G>A	uc003zne.3	+	7	827	c.700G>A	c.(700-702)GGG>AGG	p.G234R	ADAMTSL1_uc003znb.2_Missense_Mutation_p.G234R|ADAMTSL1_uc003znc.3_Missense_Mutation_p.G234R	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	234						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AACCCTCCAGGGGACTAAAGG	0.428													10	15					0	0	0.008291	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974679	21974680	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:21974679_21974680GG>AT	uc003zpk.2	-	1	359_360	c.147_148CC>AT	c.(145-150)ATCCAG>ATATAG	p.Q50*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Nonsense_Mutation_p.Q50*|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	50	ANK 2.		Q -> R (in CMM2).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(25)|p.Q50*(5)|p.V28_V51del(1)|p.Q50R(1)|p.I49I(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CTACCCACCTGGATCGGCCTCC	0.678		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			151	115					0	0	0.004672	0	0
TAF1L	138474	broad.mit.edu	37	9	32634687	32634687	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:32634687C>T	uc003zrg.1	-	1	981	c.891G>A	c.(889-891)GTG>GTA	p.V297V	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	297					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CTGAGCATTCCACCTCCTGGA	0.498													27	33					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	9	34133332	34133332	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:34133332G>A	uc003ztu.1	+	1		c.16G>A			uc003ztv.1_5'Flank|uc003ztw.1_5'Flank					DQ586874																		GGTAGGGCACGAACTTCTGAA	0.562													12	13					0	0	0.002450	0	0
NPR2	4882	broad.mit.edu	37	9	35792846	35792846	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:35792846C>T	uc003zyd.2	+	1	441	c.441C>T	c.(439-441)CCC>CCT	p.P147P	NPR2_uc010mlb.2_Silent_p.P147P	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	147	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CCTCTGCTCCCAAGCTGGGTG	0.587													44	19					0	0	0.011902	0	0
ZCCHC7	84186	broad.mit.edu	37	9	37126579	37126579	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:37126579C>T	uc003zzq.2	+	2	423	c.250C>T	c.(250-252)CAG>TAG	p.Q84*	ZCCHC7_uc011lqh.1_Intron|ZCCHC7_uc011lqi.1_Nonsense_Mutation_p.Q83*|ZCCHC7_uc010mlt.2_Nonsense_Mutation_p.Q83*|ZCCHC7_uc003zzs.1_Nonsense_Mutation_p.Q83*	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	84							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		TGAGGTCATCCAGCTGTCAGA	0.408													53	58					0	0	0.014410	0	0
FBXO10	26267	broad.mit.edu	37	9	37537249	37537249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:37537249G>A	uc004aab.2	-	3	1326	c.1277C>T	c.(1276-1278)TCC>TTC	p.S426F	FBXO10_uc004aac.2_Missense_Mutation_p.S442F|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	426						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		GCCCTGCACGGAGTTGGCCAG	0.602													10	21					0	0	0.006214	0	0
ALDH1B1	219	broad.mit.edu	37	9	38396091	38396091	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:38396091C>T	uc004aay.2	+	2	458	c.346C>T	c.(346-348)CGA>TGA	p.R116*		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	116					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	GGAGCGGGATCGAGTCTACTT	0.607													21	70					0	0	0.002780	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702812	40702812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:40702812C>T	uc010mmj.2	+	4	498	c.469C>T	c.(469-471)CCT>TCT	p.P157S		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	157	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TTCCCCGGATCCTCAAGCCAA	0.587													89	207					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	9	66513844	66513844	+	RNA	SNP	T	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:66513844T>C	uc010mnh.1	-	6		c.904A>G								Homo sapiens cDNA FLJ20444 fis, clone KAT05128.																		ATCAACGCAGTGACTCTTAAT	0.502													5	67					0	0	0.001168	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71549866	71549866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:71549866C>T	uc004agu.2	+	13	1567	c.1262C>T	c.(1261-1263)TCA>TTA	p.S421L	PIP5K1B_uc011lrq.1_Missense_Mutation_p.S421L|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	421						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		AAGGCCACTTCACAGGAGATT	0.438													17	17					0	0	0.004990	0	0
VPS13A	23230	broad.mit.edu	37	9	79865028	79865028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:79865028C>T	uc004akr.2	+	21	2313	c.2053C>T	c.(2053-2055)CGT>TGT	p.R685C	VPS13A_uc004akp.3_Missense_Mutation_p.R685C|VPS13A_uc004akq.3_Missense_Mutation_p.R685C|VPS13A_uc004aks.2_Missense_Mutation_p.R685C	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	685					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						GAGTAAAAGTCGTTCTGAATT	0.294													20	14					0	0	0.010504	0	0
VPS13A	23230	broad.mit.edu	37	9	79959077	79959077	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:79959077C>T	uc004akr.2	+	51	7295	c.7035C>T	c.(7033-7035)CCC>CCT	p.P2345P	VPS13A_uc004akp.3_Silent_p.P2345P|VPS13A_uc004akq.3_Silent_p.P2345P|VPS13A_uc004aks.2_Silent_p.P2306P	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2345					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGTGTATCCCCTTTTGGCCTG	0.284													19	23					0	0	0.006122	0	0
DAPK1	1612	broad.mit.edu	37	9	90321520	90321520	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:90321520C>T	uc004apc.2	+	26	3672	c.3534C>T	c.(3532-3534)AAC>AAT	p.N1178N	DAPK1_uc004apd.2_Silent_p.N1178N|DAPK1_uc011ltg.1_Silent_p.N1112N|DAPK1_uc011lth.1_Silent_p.N915N|DAPK1_uc004apg.2_Silent_p.N155N	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	1178	ANK 10.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						AGCTGGCCAACCGTGGGGCCG	0.642									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				10	5					0	0	0.006214	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375885	93375886	+	Missense_Mutation	DNP	GG	AA	AA	rs139132864	byFrequency	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:93375885_93375886GG>AA	uc004aqx.1	-	2	335_336	c.224_225CC>TT	c.(223-225)TCC>TTT	p.S75F		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	75					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CTTTGGAGATGGACAGCCGCTG	0.559													35	34					0	0	0.004672	0	0
PTCH1	5727	broad.mit.edu	37	9	98218603	98218603	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:98218603G>A	uc004avk.3	-	19	3449	c.3261C>T	c.(3259-3261)ATC>ATT	p.I1087I	PTCH1_uc010mro.2_Silent_p.I936I|PTCH1_uc010mrp.2_Silent_p.I936I|PTCH1_uc010mrq.2_Silent_p.I936I|PTCH1_uc004avl.3_Silent_p.I936I|PTCH1_uc010mrr.2_Silent_p.I1021I|PTCH1_uc004avm.3_Silent_p.I1086I	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1087	Helical; (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.V1057_L1102del(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CAACAGAAGCGATCAGGATGA	0.522									Basal_Cell_Nevus_syndrome				17	21					0	0	0.007413	0	0
HSD17B3	3293	broad.mit.edu	37	9	99064372	99064372	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:99064372C>T	uc004awa.1	-	1	63	c.15G>A	c.(13-15)CTG>CTA	p.L5L	HSD17B3_uc010msc.1_Silent_p.L5L	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	5					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	AGAACTGTTCCAGGACGTCCC	0.562													13	4					0	0	0.013537	0	0
TDRD7	23424	broad.mit.edu	37	9	100245160	100245160	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:100245160C>T	uc004axj.2	+	15	2667	c.2442C>T	c.(2440-2442)ATC>ATT	p.I814I	TDRD7_uc011lux.1_Silent_p.I740I|TDRD7_uc010msp.1_Silent_p.I66I|TDRD7_uc011luy.1_Silent_p.I134I	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	814					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				CCAGAGGGATCGCACATGTTT	0.368													23	21					0	0	0.005443	0	0
TMOD1	7111	broad.mit.edu	37	9	100286524	100286524	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:100286524C>T	uc004axk.1	+	2	267	c.54C>T	c.(52-54)ATC>ATT	p.I18I	TMOD1_uc004axl.1_Silent_p.I18I	NM_003275	NP_003266	P28289	TMOD1_HUMAN	tropomodulin 1	18					muscle filament sliding	cytosol	actin binding				0		Acute lymphoblastic leukemia(62;0.154)		STAD - Stomach adenocarcinoma(157;0.105)		AAGATGAAATCCTTGGAGCCC	0.473													16	11					0	0	0.004990	0	0
TRIM14	9830	broad.mit.edu	37	9	100849829	100849829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:100849829G>A	uc004ayd.2	-	6	1270	c.1252C>T	c.(1252-1254)CGC>TGC	p.R418C	TRIM14_uc004ayf.1_Missense_Mutation_p.R325C|TRIM14_uc011luz.1_Missense_Mutation_p.R196C|TRIM14_uc011lva.1_Missense_Mutation_p.R199C|TRIM14_uc004ayg.1_Missense_Mutation_p.R418C|TRIM14_uc004ayh.1_Missense_Mutation_p.R418C|TRIM14_uc004ayi.1_Intron|TRIM14_uc004ayj.1_Missense_Mutation_p.R325C	NM_033220	NP_150089	Q14142	TRI14_HUMAN	tripartite motif protein TRIM14 isoform alpha	418	B30.2/SPRY.			RLRPRDDLDRLGVFLDYEAGVLAFYDVTGGMSHLHTFRATF QEPLYPALRLWEGAISIPRLP -> ACGPATTSTGSASSWT TRPASSPSTT (in Ref. 2; BAA09478).		cytoplasm|intracellular	zinc ion binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.0559)				AACGTGGCGCGGAAGGTATGC	0.716													5	0					0	0	0.000602	0	0
TBC1D2	55357	broad.mit.edu	37	9	100971310	100971310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:100971310G>A	uc011lvb.1	-	9	1970	c.1790C>T	c.(1789-1791)GCT>GTT	p.A597V	TBC1D2_uc004ayp.2_Missense_Mutation_p.A137V|TBC1D2_uc004ayq.2_Missense_Mutation_p.A597V|TBC1D2_uc004ayr.2_Missense_Mutation_p.A379V|TBC1D2_uc004ayo.3_Missense_Mutation_p.A597V	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	597						cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		CCGATCCACAGCCTCGAGGCC	0.647													84	45					0	0	0.014410	0	0
GABBR2	9568	broad.mit.edu	37	9	101056148	101056148	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:101056148T>A	uc004ays.2	-	18	2735	c.2579A>T	c.(2578-2580)CAA>CTA	p.Q860L		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	860	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	CTGGGGATTTTGATCGAGGTG	0.383													46	30					0	0	0.014410	0	0
ANKS6	203286	broad.mit.edu	37	9	101542503	101542503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:101542503G>A	uc004ayu.2	-	6	1357	c.1336C>T	c.(1336-1338)CCA>TCA	p.P446S	ANKS6_uc004ayt.2_Missense_Mutation_p.P145S|ANKS6_uc004ayv.1_5'Flank|ANKS6_uc004ayw.1_Missense_Mutation_p.P28S|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	446										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				GGCAGCACTGGGATGCTCCAG	0.622													20	18					0	0	0.003330	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432604	104432604	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:104432604C>T	uc004bbp.1	-	3	2691	c.2090G>A	c.(2089-2091)TGG>TAG	p.W697*	GRIN3A_uc004bbq.1_Nonsense_Mutation_p.W697*	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	697	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TGGACTCTTCCATTCATACAG	0.488													54	40					0	0	0.014410	0	0
CYLC2	1539	broad.mit.edu	37	9	105763885	105763885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:105763885G>A	uc004bbs.2	+	2	113	c.43G>A	c.(43-45)GAT>AAT	p.D15N		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	15					cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TGGGCCATATGATAATTACAT	0.264													9	5					0	0	0.010729	0	0
OR13C8	138802	broad.mit.edu	37	9	107331556	107331556	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:107331556G>A	uc011lvo.1	+	1	108	c.108G>A	c.(106-108)CTG>CTA	p.L36L		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGATGTACCTGATGATCCTGC	0.453													75	50					0	0	0.014410	0	0
ZNF462	58499	broad.mit.edu	37	9	109691428	109691428	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:109691428C>T	uc004bcz.2	+	3	5524	c.5235C>T	c.(5233-5235)ATC>ATT	p.I1745I	ZNF462_uc010mto.2_Silent_p.I1593I|ZNF462_uc004bda.2_Silent_p.I1593I	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1745					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AAGTGATCATCCCATCCCCGC	0.572													13	12					0	0	0.003163	0	0
ACTL7B	10880	broad.mit.edu	37	9	111618190	111618190	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:111618190G>A	uc004bdi.2	-	1	86	c.21C>T	c.(19-21)CCC>CCT	p.P7P		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	7						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						CCAGGGGCATGGGGCTGTTCC	0.662													17	23					0	0	0.007413	0	0
ZNF483	158399	broad.mit.edu	37	9	114304716	114304716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:114304716G>A	uc004bff.2	+	6	1725	c.1501G>A	c.(1501-1503)GGG>AGG	p.G501R	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	501	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						TGATGACTGTGGGAAAGGTTT	0.388													19	10					0	0	0.006122	0	0
ALAD	210	broad.mit.edu	37	9	116154442	116154442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:116154442G>A	uc011lxf.1	-	3	323	c.121C>T	c.(121-123)CCT>TCT	p.P41S	ALAD_uc011lxe.1_Intron|ALAD_uc004bhl.3_Missense_Mutation_p.P70S	NM_000031	NP_000022	P13716	HEM2_HUMAN	delta-aminolevulinic acid dehydratase	41					heme biosynthetic process|protein homooligomerization	cytosol	identical protein binding|lead ion binding|porphobilinogen synthase activity|zinc ion binding				0					Aminolevulinic acid(DB00855)	ATGTCATCAGGAACATCCCTG	0.612													15	13					0	0	0.003163	0	0
PAPPA	5069	broad.mit.edu	37	9	118974146	118974146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:118974146G>A	uc004bjn.2	+	4	2234	c.1853G>A	c.(1852-1854)GGA>GAA	p.G618E	PAPPA_uc011lxp.1_Intron|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	618					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGGGCCAGGAAATGACACC	0.532													97	69					0	0	0.014410	0	0
TLR4	7099	broad.mit.edu	37	9	120475597	120475597	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:120475597G>A	uc004bjz.2	+	3	1482	c.1191G>A	c.(1189-1191)GGG>GGA	p.G397G	TLR4_uc004bka.2_Silent_p.G357G|TLR4_uc004bkb.2_Silent_p.G197G	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	397	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						GTGATTTTGGGACAACCAGCC	0.393													18	7					0	0	0.004990	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123216083	123216083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:123216083G>A	uc004bkf.2	-	21	2625	c.2444C>T	c.(2443-2445)TCT>TTT	p.S815F	CDK5RAP2_uc004bke.2_Missense_Mutation_p.S100F|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.S815F|CDK5RAP2_uc011lxw.1_Missense_Mutation_p.S80F|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Missense_Mutation_p.S80F|CDK5RAP2_uc011lya.1_Missense_Mutation_p.S80F|CDK5RAP2_uc004bkh.1_Intron|CDK5RAP2_uc004bki.2_Missense_Mutation_p.S582F	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	815					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						GTGTTCTCCAGAAACTTCCTG	0.433													36	20					0	0	0.004289	0	0
OR1J2	26740	broad.mit.edu	37	9	125273966	125273966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:125273966G>A	uc004bmj.1	+	4	1741	c.886G>A	c.(886-888)GAC>AAC	p.D296N	OR1J2_uc011lyv.1_Missense_Mutation_p.D296N	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TAGGAACAGGGACATGAAAGA	0.413													36	23					0	0	0.004878	0	0
OR1J2	26740	broad.mit.edu	37	9	125273983	125273983	+	Silent	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:125273983T>G	uc004bmj.1	+	4	1758	c.903T>G	c.(901-903)CTT>CTG	p.L301L	OR1J2_uc011lyv.1_Silent_p.L301L	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						AAGAGGCCCTTGGGAAACTCT	0.398													32	25					0	0	0.012213	0	0
STRBP	55342	broad.mit.edu	37	9	125932298	125932298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:125932298C>T	uc004bns.2	-	6	848	c.418G>A	c.(418-420)GAA>AAA	p.E140K	STRBP_uc004bnt.2_5'UTR|STRBP_uc004bnu.2_Missense_Mutation_p.E126K|STRBP_uc004bnv.2_Missense_Mutation_p.E140K	NM_018387	NP_060857	Q96SI9	STRBP_HUMAN	spermatid perinuclear RNA binding protein	140	DZF.				multicellular organismal development	cytoplasm|nucleus	DNA binding			breast(1)|skin(1)	2						ACACATTGTTCCACTTGATAT	0.348													10	5					0	0	0.002450	0	0
CRB2	286204	broad.mit.edu	37	9	126132723	126132723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:126132723G>A	uc004bnx.1	+	7	1483	c.1391G>A	c.(1390-1392)AGG>AAG	p.R464K	CRB2_uc004bnw.1_Missense_Mutation_p.R464K	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	464	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CTGGCACTGAGGTTTCGCACC	0.607													9	14					0	0	0.004482	0	0
DENND1A	57706	broad.mit.edu	37	9	126144301	126144301	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:126144301G>A	uc004bnz.1	-	22	2673	c.2440C>T	c.(2440-2442)CAA>TAA	p.Q814*	DENND1A_uc011lzl.1_Nonsense_Mutation_p.Q632*|DENND1A_uc004bny.1_Nonsense_Mutation_p.Q596*|DENND1A_uc011lzm.1_Nonsense_Mutation_p.Q825*|DENND1A_uc010mwh.1_Nonsense_Mutation_p.Q235*	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	814	Pro-rich.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						AAGCTGAATTGGGGGGTGAAT	0.682													10	3					0	0	0.008291	0	0
GOLGA1	2800	broad.mit.edu	37	9	127650642	127650642	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:127650642G>A	uc004bpc.2	-	19	2137	c.1795C>T	c.(1795-1797)CAG>TAG	p.Q599*	GOLGA1_uc010mws.2_RNA	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	599	Potential.					Golgi cisterna membrane				ovary(1)	1						GTTGGAAGCTGGAACACAGGG	0.547													64	43					0	0	0.014410	0	0
FAM129B	64855	broad.mit.edu	37	9	130269305	130269305	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:130269305G>C	uc004brh.2	-	14	2262	c.2060C>G	c.(2059-2061)GCC>GGC	p.A687G	FAM129B_uc004bri.2_Missense_Mutation_p.A674G|FAM129B_uc004brj.3_3'UTR	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	687							protein binding				0						GGCCTCGGGGGCGGCCTTAGG	0.731													9	2					0	0	0.004482	0	0
TTC16	158248	broad.mit.edu	37	9	130486511	130486511	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:130486511C>T	uc004brq.1	+	8	1052	c.985C>T	c.(985-987)CAG>TAG	p.Q329*	PTRH1_uc011mah.1_Intron|TTC16_uc011mai.1_Nonsense_Mutation_p.Q316*|TTC16_uc004brr.1_Nonsense_Mutation_p.Q274*|TTC16_uc010mxn.1_5'UTR	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	329							binding				0						GGCACAGCGCCAGCTGTTGCT	0.642													23	18					0	0	0.004656	0	0
CRAT	1384	broad.mit.edu	37	9	131857852	131857852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:131857852C>T	uc004bxh.2	-	14	1987	c.1705G>A	c.(1705-1707)GTG>ATG	p.V569M	CRAT_uc004bxg.2_Missense_Mutation_p.V548M|CRAT_uc004bxk.3_Missense_Mutation_p.V548M	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	569					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	TCGGGGACCACGGGCCCGAAG	0.632													5	24					0	0	0.001168	0	0
ASS1	445	broad.mit.edu	37	9	133333934	133333934	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:133333934G>A	uc004bzm.2	+	5	677	c.321G>A	c.(319-321)CAG>CAA	p.Q107Q	ASS1_uc004bzn.2_Silent_p.Q107Q|ASS1_uc010mza.2_Silent_p.Q183Q|ASS1_uc004bzo.2_Silent_p.Q107Q|ASS1_uc010mzb.2_Silent_p.Q145Q|ASS1_uc004bzp.2_Silent_p.Q107Q|ASS1_uc010mzc.2_Silent_p.Q107Q	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	107					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	AAATCGCCCAGCGGGAGGGGG	0.667													11	13					0	0	0.013537	0	0
ASS1	445	broad.mit.edu	37	9	133346888	133346888	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:133346888C>T	uc004bzm.2	+	9	939	c.583C>T	c.(583-585)CTG>TTG	p.L195L	ASS1_uc004bzn.2_Silent_p.L195L|ASS1_uc010mza.2_Silent_p.L271L|ASS1_uc004bzo.2_Silent_p.L176L|ASS1_uc010mzb.2_Silent_p.L233L|ASS1_uc004bzp.2_Silent_p.L195L|ASS1_uc010mzc.2_Silent_p.L195L	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	195					arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	GGCTGGAATCCTGGAGAACCC	0.582													19	14					0	0	0.012319	0	0
BAT2L1	84726	broad.mit.edu	37	9	134350747	134350747	+	Silent	SNP	T	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:134350747T>G	uc004can.3	+	15	3286	c.3231T>G	c.(3229-3231)CGT>CGG	p.R1077R	BAT2L1_uc010mzj.1_Silent_p.R660R|BAT2L1_uc004cao.3_Silent_p.R435R	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1077							protein binding				0						TCACTTTTCGTGGTCGGCCTG	0.632													12	6					0	0	0.010729	0	0
BARHL1	56751	broad.mit.edu	37	9	135458257	135458257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:135458257G>A	uc004cbp.1	+	1	265	c.73G>A	c.(73-75)GGG>AGG	p.G25R		NM_020064	NP_064448	Q9BZE3	BARH1_HUMAN	BarH-like homeobox 1	25						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;1.79e-06)|Epithelial(140;3.12e-05)		CCTTCCCAAGGGGGACCCCTT	0.652													28	28					0	0	0.007291	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136409658	136409658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:136409658C>T	uc011mdl.1	+	8	1306	c.749C>T	c.(748-750)TCC>TTC	p.S250F	ADAMTSL2_uc004cei.2_Missense_Mutation_p.S250F	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	250					negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		AGGAAGAAGTCCGCTGACGTG	0.582													25	31					0	0	0.003954	0	0
DBH	1621	broad.mit.edu	37	9	136501715	136501715	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:136501715C>T	uc004cel.2	+	1	231	c.222C>T	c.(220-222)TTC>TTT	p.F74F		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	74	DOMON.|Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CCATCCATTTCCAGCTCCTGG	0.637													17	11					0	0	0.004007	0	0
SARDH	1757	broad.mit.edu	37	9	136561368	136561368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:136561368G>A	uc004cep.3	-	14	1918	c.1784C>T	c.(1783-1785)TCC>TTC	p.S595F	SARDH_uc004ceo.2_Missense_Mutation_p.S595F|SARDH_uc011mdn.1_Missense_Mutation_p.S595F|SARDH_uc011mdo.1_Missense_Mutation_p.S427F|SARDH_uc004cen.2_Missense_Mutation_p.S23F	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	595					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GACATCTGCGGAGAAGAGCCA	0.617													16	18					0	0	0.004990	0	0
BRD3	8019	broad.mit.edu	37	9	136901263	136901263	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:136901263G>A	uc004cew.2	-	10	2015	c.1827C>T	c.(1825-1827)TCC>TCT	p.S609S	BRD3_uc004cex.2_3'UTR	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	609						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		CGTCGGGGTTGGAGTCCCTGA	0.532			T	NUT|C15orf55	lethal midline carcinoma of young people								32	17					0	0	0.012213	0	0
COL5A1	1289	broad.mit.edu	37	9	137717665	137717665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:137717665G>A	uc004cfe.2	+	63	5364	c.4982G>A	c.(4981-4983)GGA>GAA	p.G1661E	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1661	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCTAACCAAGGATGCTCCAGG	0.562													26	11					0	0	0.012213	0	0
KCNT1	57582	broad.mit.edu	37	9	138675892	138675892	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:138675892A>G	uc011mdq.1	+	25	2938	c.2864A>G	c.(2863-2865)AAC>AGC	p.N955S	KCNT1_uc011mdr.1_Missense_Mutation_p.N782S|KCNT1_uc010nbf.2_Missense_Mutation_p.N910S|KCNT1_uc004cgo.1_Missense_Mutation_p.N704S	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	955						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		AATGGCTCCAACCTGGCCTTC	0.662													13	11					0	0	0.003163	0	0
GRIN1	2902	broad.mit.edu	37	9	140040184	140040184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:140040184C>T	uc004clk.2	+	3	730	c.400C>T	c.(400-402)CAC>TAC	p.H134Y	GRIN1_uc004cli.1_5'UTR|GRIN1_uc004clj.1_Missense_Mutation_p.H131Y|GRIN1_uc004cll.2_Missense_Mutation_p.H134Y|GRIN1_uc004clm.2_Missense_Mutation_p.H134Y|GRIN1_uc004cln.2_Missense_Mutation_p.H131Y|GRIN1_uc004clo.2_Missense_Mutation_p.H131Y	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	134	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GCAGAGCATCCACCTGAGCTT	0.692													9	11					0	0	0.008291	0	0
C9orf173	441476	broad.mit.edu	37	9	140146524	140146525	+	Missense_Mutation	DNP	CC	TT	TT	rs143046453	by1000genomes	TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:140146524_140146525CC>TT	uc004cmk.1	+	3	349_350	c.337_338CC>TT	c.(337-339)CCG>TTG	p.P113L	C9orf173_uc004cmj.1_Missense_Mutation_p.P114L|C9orf173_uc011meu.1_Intron|C9orf173_uc010ncd.1_Intron|C9orf173_uc011mev.1_Missense_Mutation_p.P113L|C9orf173_uc004cml.1_Missense_Mutation_p.P113L			Q8N7X2	CI173_HUMAN	SubName: Full=LOC441476 protein;	114										pancreas(1)	1						GGTGCCGAGCCCGTCCGTACGA	0.673													6	7					0	0	0.004672	0	0
WDR85	92715	broad.mit.edu	37	9	140450068	140450068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:140450068G>A	uc004cnk.1	-	9	1140	c.982C>T	c.(982-984)CAC>TAC	p.H328Y	WDR85_uc004cnj.1_Missense_Mutation_p.H57Y|WDR85_uc004cnl.1_Missense_Mutation_p.H152Y|WDR85_uc004cnm.1_Missense_Mutation_p.H89Y|WDR85_uc004cnn.1_Missense_Mutation_p.H57Y|WDR85_uc004cni.2_RNA	NM_138778	NP_620133	Q9BTV6	WDR85_HUMAN	WD repeat domain 85	328					peptidyl-diphthamide biosynthetic process from peptidyl-histidine						0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.00029)|Epithelial(140;0.000509)		GGCAATGTGTGAGATGTCAGG	0.602													27	18					0	0	0.007291	0	0
EHMT1	79813	broad.mit.edu	37	9	140708908	140708908	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:140708908C>G	uc011mfc.1	+	22	3243	c.3206C>G	c.(3205-3207)TCC>TGC	p.S1069C	EHMT1_uc004coe.2_5'Flank	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1069	Pre-SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GACGACTGCTCCTCCAGCAAC	0.632													29	23					0	0	0.003755	0	0
CRLF2	64109	broad.mit.edu	37	X	1321287	1321287	+	RNA	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:1321287G>A	uc004cpm.1	-	4		c.468C>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				ACTCGGTGTCGAAGGGGCTCC	0.617			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								22	30					0	0	0.002780	0	0
CSF2RA	1438	broad.mit.edu	37	X	1401667	1401667	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:1401667A>T	uc010nct.2	+	4	393	c.71A>T	c.(70-72)AAA>ATA	p.K24I	CSF2RA_uc011mhb.1_Missense_Mutation_p.K24I|CSF2RA_uc004cpq.2_Missense_Mutation_p.K24I|CSF2RA_uc004cpn.2_Missense_Mutation_p.K24I|CSF2RA_uc004cpo.2_Missense_Mutation_p.K24I|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Missense_Mutation_p.K24I|CSF2RA_uc010ncv.2_Missense_Mutation_p.K24I|CSF2RA_uc004cpr.2_Missense_Mutation_p.K24I	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	24	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	ATCCCAGAGAAATCGGGTAAG	0.537													92	212					0	0	0.014410	0	0
MXRA5	25878	broad.mit.edu	37	X	3227926	3227926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:3227926G>A	uc004crg.3	-	7	8475	c.8318C>T	c.(8317-8319)TCG>TTG	p.S2773L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2773	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTTCAGATGCGACTTATCCGG	0.562													23	13					0	0	0.006320	0	0
MXRA5	25878	broad.mit.edu	37	X	3228224	3228224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:3228224G>A	uc004crg.3	-	7	8177	c.8020C>T	c.(8020-8022)CCC>TCC	p.P2674S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2674	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATGCCATTGGGGAGCGTCCAG	0.607													18	36					0	0	0.008871	0	0
MXRA5	25878	broad.mit.edu	37	X	3229630	3229630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:3229630G>A	uc004crg.3	-	7	6771	c.6614C>T	c.(6613-6615)ACC>ATC	p.T2205I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2205	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACCACCAGGGTCCCATTGGC	0.448													41	8					0	0	0.007835	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811415	5811415	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:5811415T>A	uc010ndh.2	-	6	2395	c.1894A>T	c.(1894-1896)ATA>TTA	p.I632L	NLGN4X_uc004crp.2_Missense_Mutation_p.I652L|NLGN4X_uc004crq.2_Missense_Mutation_p.I632L|NLGN4X_uc010ndi.2_Missense_Mutation_p.I669L|NLGN4X_uc004crr.2_Missense_Mutation_p.I632L|NLGN4X_uc010ndj.2_Missense_Mutation_p.I632L	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	632	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GTTGGCCATATCTTGGCGGGA	0.502													29	53					0	0	0.003755	0	0
GLRA2	2742	broad.mit.edu	37	X	14627222	14627222	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:14627222C>T	uc010nep.2	+	8	1157	c.825C>T	c.(823-825)TCC>TCT	p.S275S	GLRA2_uc010neq.2_Silent_p.S275S|GLRA2_uc004cwe.3_Silent_p.S275S|GLRA2_uc011mio.1_Silent_p.S186S|GLRA2_uc011mip.1_Silent_p.S253S	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	275	Helical; (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CCTGGGTTTCCTTTTGGATAA	0.488													67	24					0	0	0.014410	0	0
SCML2	10389	broad.mit.edu	37	X	18259476	18259476	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:18259476G>A	uc004cyl.2	-	15	2155	c.1998C>T	c.(1996-1998)TTC>TTT	p.F666F	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_3'UTR|SCML2_uc011miz.1_3'UTR|SCML2_uc010nfc.2_3'UTR	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	666	SAM.				anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					TCTTGAGTAGGAACAGAGCCT	0.343													54	14					0	0	0.014410	0	0
PTCHD1	139411	broad.mit.edu	37	X	23412060	23412060	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:23412060C>T	uc004dal.3	+	3	2433	c.2425C>T	c.(2425-2427)CTG>TTG	p.L809L		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	809	Helical; (Potential).				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TATTGTTGGTCTGATTCCTCT	0.413													41	9					0	0	0.006230	0	0
EIF2S3	1968	broad.mit.edu	37	X	24086119	24086119	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:24086119C>T	uc004dbc.2	+	9	927	c.906C>T	c.(904-906)TCC>TCT	p.S302S		NM_001415	NP_001406	P41091	IF2G_HUMAN	eukaryotic translation initiation factor 2,	302						cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			lung(1)	1						GTATTGTTTCCAAAGATAGTG	0.363													46	20					0	0	0.013114	0	0
ZFX	7543	broad.mit.edu	37	X	24228474	24228474	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:24228474A>T	uc004dbf.2	+	9	1657	c.1399A>T	c.(1399-1401)AAG>TAG	p.K467*	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Nonsense_Mutation_p.K506*|ZFX_uc010nfz.2_Nonsense_Mutation_p.K123*	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	467	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						CACTACCAACAAGAAGATAAG	0.453													37	6					0	0	0.004289	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766905	27766905	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:27766905C>T	uc011mjy.1	+	1	1980	c.1893C>T	c.(1891-1893)TCC>TCT	p.S631S		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						GCATGCCATCCTGAAGGCCTC	0.433													14	2					0	0	0.006122	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973843	29973843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:29973843C>T	uc004dby.2	+	11	2505	c.1997C>T	c.(1996-1998)TCG>TTG	p.S666L		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	666	Cytoplasmic (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						CAGACAAAATCGAGCAGGGAG	0.532													14	3					0	0	0.002450	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237582	30237582	+	Silent	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:30237582A>T	uc004dbz.2	+	2	988	c.885A>T	c.(883-885)GTA>GTT	p.V295V		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	295	MAGE.						protein binding			ovary(1)	1						TGGCCAAGGTAAATGGTACCA	0.527													14	5					0	0	0.001855	0	0
FAM47B	170062	broad.mit.edu	37	X	34961230	34961230	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:34961230G>A	uc004ddi.1	+	1	300	c.282G>A	c.(280-282)AAG>AAA	p.K94K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	94										ovary(3)|breast(1)	4						AAAGCAGGAAGAAAAAGCTGC	0.527													48	12					0	0	0.014410	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820652	35820652	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:35820652C>T	uc010ngt.1	+	2	618	c.339C>T	c.(337-339)CTC>CTT	p.L113L		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	113	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						CAGATGCTCTCGACCAGAAAG	0.438													16	10					0	0	0.004990	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820755	35820755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:35820755G>A	uc010ngt.1	+	2	721	c.442G>A	c.(442-444)GAG>AAG	p.E148K		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	148	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						CAAAGATGATGAGAGCCACTT	0.448													44	12					0	0	0.011902	0	0
FAM47C	442444	broad.mit.edu	37	X	37027798	37027798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:37027798C>T	uc004ddl.1	+	1	1329	c.1315C>T	c.(1315-1317)CGC>TGC	p.R439C		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	439										ovary(3)	3						ATCTCATCTCCGCCCGGAACC	0.612													36	13					0	0	0.003755	0	0
CYBB	1536	broad.mit.edu	37	X	37642818	37642818	+	Nonsense_Mutation	SNP	C	T	T	rs137854588		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:37642818C>T	uc004ddr.2	+	3	278	c.217C>T	c.(217-219)CGA>TGA	p.R73*	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Nonsense_Mutation_p.R41*|CYBB_uc011mkg.1_5'UTR	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	73	Cytoplasmic (Potential).|Ferric oxidoreductase.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GCCAGTCTGTCGAAATCTGCT	0.498													23	6					0	0	0.003330	0	0
MED14	9282	broad.mit.edu	37	X	40518793	40518793	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:40518793C>A	uc004dex.3	-	27	3891	c.3751G>T	c.(3751-3753)GTA>TTA	p.V1251L	MED14_uc004dey.1_Missense_Mutation_p.V153L	NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	1251					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						CTAAGAGCTACTCTGCATTTC	0.393													23	15					3.01185e-09	3.31359e-09	0.003954	1	0
DDX3X	1654	broad.mit.edu	37	X	41203370	41203370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:41203370G>A	uc004dfe.2	+	9	1708	c.853G>A	c.(853-855)GAA>AAA	p.E285K	DDX3X_uc010nhf.1_Missense_Mutation_p.E269K|DDX3X_uc004dff.2_Missense_Mutation_p.E285K|DDX3X_uc011mkq.1_Missense_Mutation_p.E269K|DDX3X_uc011mkr.1_Missense_Mutation_p.E285K|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	285	Necessary for interaction with XPO1.|Helicase ATP-binding.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						GATCTACGAGGAAGCCAGAAA	0.363										HNSCC(61;0.18)			6	3					0	0	0.001984	0	0
MAOA	4128	broad.mit.edu	37	X	43603700	43603700	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:43603700C>T	uc004dfy.2	+	15	1705	c.1524C>T	c.(1522-1524)TCC>TCT	p.S508S	MAOA_uc011mkw.1_Silent_p.S375S	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	508	Helical; Anchor for type IV membrane protein.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	TTGGATTTTCCACATCAGTAA	0.483													29	10					0	0	0.008361	0	0
RBM10	8241	broad.mit.edu	37	X	47034426	47034426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:47034426C>T	uc004dhf.2	+	6	890	c.511C>T	c.(511-513)CGG>TGG	p.R171W	RBM10_uc004dhe.1_Intron|RBM10_uc004dhg.2_Missense_Mutation_p.R94W|RBM10_uc004dhh.2_Missense_Mutation_p.R171W|RBM10_uc010nhq.2_Missense_Mutation_p.R94W|RBM10_uc004dhi.2_Missense_Mutation_p.R236W	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	171	RRM 1.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						AGGTCAGAGCCGGGGCTTCGC	0.552													23	4					0	0	0.003330	0	0
UBA1	7317	broad.mit.edu	37	X	47065792	47065792	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:47065792C>T	uc004dhj.3	+	16	2038	c.1887C>T	c.(1885-1887)ATC>ATT	p.I629I	UBA1_uc004dhk.3_Silent_p.I629I|UBA1_uc004dhm.2_5'Flank	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	629					cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						AGAAGTCCATCCCCATCTGTA	0.572													23	8					0	0	0.006320	0	0
HDAC6	10013	broad.mit.edu	37	X	48674442	48674442	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:48674442C>T	uc011mmi.1	+	17	1571	c.1476C>T	c.(1474-1476)CAC>CAT	p.H492H	HDAC6_uc004dks.1_Silent_p.H492H|HDAC6_uc010nig.1_Silent_p.H340H|HDAC6_uc004dkt.1_Silent_p.H492H|HDAC6_uc011mmk.1_Silent_p.H473H|HDAC6_uc004dkv.1_Silent_p.H140H|HDAC6_uc004dkw.1_Silent_p.H140H	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	492	Histone deacetylase 2.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	TGATGAATCACTGCAACTTGT	0.567													25	11					0	0	0.004656	0	0
CACNA1F	778	broad.mit.edu	37	X	49070637	49070637	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:49070637G>A	uc004dnb.2	-	30	3785	c.3723C>T	c.(3721-3723)ATC>ATT	p.I1241I	CACNA1F_uc010nip.2_Silent_p.I1230I	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1241	IV.|Helical; Name=S2 of repeat IV; (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TGAAGGCGATGATTTTGAGCA	0.542													34	11					0	0	0.003755	0	0
CCNB3	85417	broad.mit.edu	37	X	50052004	50052004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:50052004C>T	uc004dox.3	+	6	1133	c.835C>T	c.(835-837)CCC>TCC	p.P279S	CCNB3_uc004doy.2_Missense_Mutation_p.P279S|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	279					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GGAGTCAATCCCCACCCATAA	0.418													28	9					0	0	0.005443	0	0
PAGE5	90737	broad.mit.edu	37	X	55249139	55249139	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:55249139G>A	uc004duj.2	+	4	578	c.336G>A	c.(334-336)GGG>GGA	p.G112G	PAGE5_uc004duk.2_Silent_p.G92G	NM_130467	NP_569734	Q96GU1	GGEE1_HUMAN	P antigen family, member 5 isoform 1	112											0						TCAGGGAGGGGACTCTGCCCA	0.408													67	14					0	0	0.014410	0	0
FOXR2	139628	broad.mit.edu	37	X	55650332	55650332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:55650332G>A	uc004duo.2	+	1	500	c.188G>A	c.(187-189)AGG>AAG	p.R63K		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	63					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						CCTCAGAAGAGGAGACCCAGT	0.537													18	20					0	0	0.010504	0	0
MTMR8	55613	broad.mit.edu	37	X	63574716	63574716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:63574716C>T	uc004dvs.2	-	4	477	c.409G>A	c.(409-411)GGG>AGG	p.G137R	MTMR8_uc011mou.1_Missense_Mutation_p.G137R|MTMR8_uc004dvt.1_Missense_Mutation_p.G137R	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	137	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						CCCATACGCCCAAAGTCTGAT	0.383													21	11					0	0	0.002780	0	0
NHSL2	340527	broad.mit.edu	37	X	71359251	71359251	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:71359251A>G	uc011mqa.1	+	6	1853	c.1853A>G	c.(1852-1854)CAG>CGG	p.Q618R	NHSL2_uc004eak.1_Missense_Mutation_p.Q252R|NHSL2_uc010nli.2_Missense_Mutation_p.Q387R	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	618											0	Renal(35;0.156)					CCAGATGCTCAGGGTCACCCA	0.522													22	7					0	0	0.002780	0	0
PHKA1	5255	broad.mit.edu	37	X	71804146	71804146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:71804146C>T	uc004eax.3	-	30	3551	c.3250G>A	c.(3250-3252)GGA>AGA	p.G1084R	PHKA1_uc004eay.3_Missense_Mutation_p.G1071R|PHKA1_uc011mqi.1_Missense_Mutation_p.G1012R|PHKA1_uc010nll.2_Missense_Mutation_p.G116R	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	1084	Calmodulin-binding (Potential).				glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					ACAGAAAGTCCGTGACACTGC	0.418													25	8					0	0	0.005443	0	0
TSIX	9383	broad.mit.edu	37	X	73045886	73045886	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:73045886C>T	uc004ebn.2	+	1		c.33847C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CTCGCTTTGTCCCAGGCACAG	0.517													83	23					0	0	0.014410	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960452	73960452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:73960452G>A	uc004eby.2	-	3	4557	c.3940C>T	c.(3940-3942)CAG>TAG	p.Q1314*		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1314					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GAAGGCTCCTGAAATTCCCGT	0.532													50	18					0	0	0.014410	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004776	75004776	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:75004776G>A	uc004ecj.1	-	1	296	c.111C>T	c.(109-111)TCC>TCT	p.S37S		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	37										ovary(1)|skin(1)	2						CGACTAGCATGGAGGTGGGGG	0.582													33	10					0	0	0.004289	0	0
ATRX	546	broad.mit.edu	37	X	76931741	76931741	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:76931741G>T	uc004ecp.3	-	10	4021	c.3789C>A	c.(3787-3789)GAC>GAA	p.D1263E	ATRX_uc004ecq.3_Missense_Mutation_p.D1225E|ATRX_uc004eco.3_Missense_Mutation_p.D1048E|ATRX_uc004ecr.2_Missense_Mutation_p.D1195E	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1263	Poly-Asp.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GATCATTGTCGTCATCATCAT	0.383			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						20	6					3.01185e-09	3.31359e-09	0.003954	1	0
GPR174	84636	broad.mit.edu	37	X	78426748	78426748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:78426748C>T	uc004edg.1	+	1	280	c.244C>T	c.(244-246)CAT>TAT	p.H82Y		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	82	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CTACTTGAATCATGACTGGCC	0.418										HNSCC(63;0.18)			16	8					0	0	0.003163	0	0
TBX22	50945	broad.mit.edu	37	X	79281235	79281235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:79281235C>T	uc010nmg.1	+	5	726	c.592C>T	c.(592-594)CGC>TGC	p.R198C	TBX22_uc004edi.1_Missense_Mutation_p.R78C|TBX22_uc004edj.1_Missense_Mutation_p.R198C	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	198	T-box.				multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						CAGCTTTGATCGCATGAAACT	0.527													5	10					0	0	0.000602	0	0
CYLC1	1538	broad.mit.edu	37	X	83128722	83128722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:83128722G>A	uc004eei.1	+	4	1027	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	CYLC1_uc004eeh.1_Missense_Mutation_p.E335K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	336	2.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						TACTGATGCTGAATCTGGAGA	0.239													8	11					0	0	0.003080	0	0
DACH2	117154	broad.mit.edu	37	X	85969583	85969583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:85969583C>T	uc004eew.2	+	6	1134	c.964C>T	c.(964-966)CCC>TCC	p.P322S	DACH2_uc004eex.2_Missense_Mutation_p.P309S|DACH2_uc010nmq.2_Missense_Mutation_p.P188S|DACH2_uc011mra.1_Missense_Mutation_p.P155S|DACH2_uc010nmr.2_Missense_Mutation_p.P103S|DACH2_uc004eey.2_Missense_Mutation_p.P5S|DACH2_uc004eez.2_Missense_Mutation_p.P5S	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						GATGCCTCATCCCCTACTTCC	0.403													41	14					0	0	0.014410	0	0
PABPC5	140886	broad.mit.edu	37	X	90691564	90691564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:90691564C>T	uc004efg.2	+	2	1428	c.988C>T	c.(988-990)CGG>TGG	p.R330W	PABPC5_uc004eff.1_Missense_Mutation_p.R166W	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	330	RRM 4.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						GTCAATTAGTCGGGCCAAAGT	0.453													31	10					0	0	0.012213	0	0
LOC643486	643486	broad.mit.edu	37	X	95592766	95592766	+	RNA	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:95592766C>T	uc010nmx.2	-	1		c.136G>A				NR_003539				Homo sapiens cDNA FLJ42288 fis, clone TLIVE2006236.												0						TTATGCCATTCGAAAGCTGCT	0.353													12	5					0	0	0.010729	0	0
ZMAT1	84460	broad.mit.edu	37	X	101152859	101152859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:101152859C>T	uc011mrl.1	-	5	798	c.487G>A	c.(487-489)GGA>AGA	p.G163R	ZMAT1_uc004ein.2_5'UTR|ZMAT1_uc011mrm.1_5'UTR	NM_001011657	NP_001011657	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 1	Error:Variant_position_missing_in_A7MD47_after_alignment						nucleus	zinc ion binding			ovary(1)	1						GGTTGAAATCCTGATGGAGAT	0.413													23	11					0	0	0.002780	0	0
ZCCHC18	644353	broad.mit.edu	37	X	103359106	103359106	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:103359106C>T	uc011msh.1	+	3	1620	c.304C>T	c.(304-306)CAG>TAG	p.Q102*	MCART6_uc004elu.2_Intron|ZCCHC18_uc011msg.1_Intron	NM_001143978	NP_001137450	P0CG32	ZCC18_HUMAN	zinc finger, CCHC domain containing 18	102							nucleic acid binding|zinc ion binding				0						GCGTTTGCTTCAGGCGGCCAA	0.502													18	10					0	0	0.006122	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104999228	104999229	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:104999228_104999229AC>TT	uc004elz.1	+	10	2006_2007	c.1250_1251AC>TT	c.(1249-1251)GAC>GTT	p.D417V		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	417	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GATACTTTAGACTGTGACAATC	0.381													50	23					0	0	0.004672	0	0
PAK3	5063	broad.mit.edu	37	X	110390987	110390987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:110390987G>A	uc004epa.2	+	4	371	c.344G>A	c.(343-345)CGA>CAA	p.R115Q	PAK3_uc010npt.1_Missense_Mutation_p.R100Q|PAK3_uc010npu.1_Missense_Mutation_p.R100Q|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.R100Q|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.R136Q|PAK3_uc010npw.1_Missense_Mutation_p.R121Q	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	115	Autoregulatory region (By similarity).|Linker.|GTPase-binding (By similarity).				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						CAATGGGCACGATTACTCCAA	0.398										TSP Lung(19;0.15)			40	14					0	0	0.009718	0	0
HTR2C	3358	broad.mit.edu	37	X	114082605	114082605	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:114082605G>A	uc004epu.1	+	5	1117	c.389G>A	c.(388-390)TGG>TAG	p.W130*	HTR2C_uc010nqc.1_Nonsense_Mutation_p.W130*|HTR2C_uc004epv.1_Nonsense_Mutation_p.W130*	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	130	Helical; Name=3; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TGCCCCGTCTGGATTTCTTTA	0.418													51	23					0	0	0.014410	0	0
HTR2C	3358	broad.mit.edu	37	X	114141243	114141243	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:114141243C>T	uc004epu.1	+	6	1370	c.642C>T	c.(640-642)TTC>TTT	p.F214F	HTR2C_uc010nqc.1_Silent_p.F214F|HTR2C_uc004epv.1_Missense_Mutation_p.R183C	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	214	Helical; Name=5; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ACCCAAATTTCGTTCTTATTG	0.468													115	51					0	0	0.014410	0	0
PLS3	5358	broad.mit.edu	37	X	114864164	114864164	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:114864164T>A	uc004eqd.2	+	5	775	c.385T>A	c.(385-387)TTT>ATT	p.F129I	PLS3_uc010nqf.2_RNA|PLS3_uc010nqg.2_Intron|PLS3_uc011mtf.1_Missense_Mutation_p.F107I|PLS3_uc004eqe.2_Missense_Mutation_p.F129I|PLS3_uc011mtg.1_Missense_Mutation_p.F102I|PLS3_uc011mth.1_Missense_Mutation_p.F84I	NM_005032	NP_005023	P13797	PLST_HUMAN	plastin 3	129	Actin-binding 1.|CH 1.					cytoplasm	actin binding|calcium ion binding			lung(1)|breast(1)	2						AAAATATGCTTTTGTTAACTG	0.318													77	32					0	0	0.014410	0	0
KLHL13	90293	broad.mit.edu	37	X	117043777	117043777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:117043777G>A	uc004eql.2	-	5	915	c.853C>T	c.(853-855)CCA>TCA	p.P285S	KLHL13_uc004eqk.2_Missense_Mutation_p.P234S|KLHL13_uc011mtn.1_Missense_Mutation_p.P125S|KLHL13_uc011mto.1_Missense_Mutation_p.P279S|KLHL13_uc011mtp.1_Missense_Mutation_p.P287S|KLHL13_uc004eqm.2_Missense_Mutation_p.P234S|KLHL13_uc011mtq.1_Missense_Mutation_p.P269S	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	285	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GTCATCAGTGGAAATCGTATG	0.433													43	18					0	0	0.011902	0	0
KLHL13	90293	broad.mit.edu	37	X	117044002	117044002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:117044002C>T	uc004eql.2	-	5	690	c.628G>A	c.(628-630)GAA>AAA	p.E210K	KLHL13_uc004eqk.2_Missense_Mutation_p.E159K|KLHL13_uc011mtn.1_Missense_Mutation_p.E50K|KLHL13_uc011mto.1_Missense_Mutation_p.E204K|KLHL13_uc011mtp.1_Missense_Mutation_p.E212K|KLHL13_uc004eqm.2_Missense_Mutation_p.E159K|KLHL13_uc011mtq.1_Missense_Mutation_p.E194K	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	210	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TTATCCACTTCGGTTAGATTG	0.388													36	14					0	0	0.005524	0	0
GRIA3	2892	broad.mit.edu	37	X	122459933	122459934	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:122459933_122459934AC>TT	uc004etq.3	+	5	858_859	c.565_566AC>TT	c.(565-567)ACA>TTA	p.T189L	GRIA3_uc004etr.3_Missense_Mutation_p.T189L|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.T173L	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	189	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	CTGGCAAGTAACAGCAAGGTCT	0.426													11	15					0	0	0.004672	0	0
ODZ1	10178	broad.mit.edu	37	X	124097411	124097411	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:124097411C>T	uc004euj.2	-	1	256	c.192G>A	c.(190-192)AGG>AGA	p.R64R	ODZ1_uc011muj.1_Silent_p.R64R|ODZ1_uc010nqy.2_Silent_p.R64R	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	64	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTACTTCTTTCCTCTTTCTAC	0.358													97	50					0	0	0.014410	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130218372	130218372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:130218372G>A	uc004evz.2	+	5	1084	c.739G>A	c.(739-741)GAA>AAA	p.E247K	ARHGAP36_uc004ewa.2_Missense_Mutation_p.E235K|ARHGAP36_uc004ewb.2_Missense_Mutation_p.E216K|ARHGAP36_uc004ewc.2_Missense_Mutation_p.E111K	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	247	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CCAATTCATTGAAAAACATGG	0.478													16	11					0	0	0.004007	0	0
FRMD7	90167	broad.mit.edu	37	X	131220009	131220009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:131220009G>A	uc004ewn.2	-	6	614	c.436C>T	c.(436-438)CGG>TGG	p.R146W	FRMD7_uc011muy.1_Missense_Mutation_p.R131W	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	146	FERM.		R -> W (in NYS1).		regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GGTAAGTACCGAGTTTGTGCC	0.433													68	23					0	0	0.014410	0	0
USP26	83844	broad.mit.edu	37	X	132161263	132161263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:132161263G>A	uc010nrm.1	-	6	1456	c.986C>T	c.(985-987)CCA>CTA	p.P329L	USP26_uc011mvf.1_Missense_Mutation_p.P329L	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	329					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TTTACCCCATGGGAAACTCTG	0.388													24	13					0	0	0.002780	0	0
DDX26B	203522	broad.mit.edu	37	X	134711293	134711293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:134711293C>T	uc004eyw.3	+	14	2312	c.1949C>T	c.(1948-1950)CCC>CTC	p.P650L	DDX26B_uc004eyx.3_Missense_Mutation_p.P251L	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	650											0	Acute lymphoblastic leukemia(192;6.56e-05)					AAGGGACCACCCTCAGCCTCG	0.483													50	11					0	0	0.014410	0	0
MAP7D3	79649	broad.mit.edu	37	X	135302927	135302927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:135302927G>A	uc004ezt.2	-	16	2574	c.2483C>T	c.(2482-2484)TCA>TTA	p.S828L	MAP7D3_uc004ezs.2_Missense_Mutation_p.S792L|MAP7D3_uc011mwc.1_Missense_Mutation_p.S810L|MAP7D3_uc010nsa.1_Missense_Mutation_p.S786L	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	828						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					GACTCACCTTGAAACTACTTC	0.313													81	27					0	0	0.014410	0	0
BRS3	680	broad.mit.edu	37	X	135570517	135570517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:135570517C>T	uc004ezv.1	+	1	393	c.244C>T	c.(244-246)CCA>TCA	p.P82S		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	82	Cytoplasmic (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GCAAACAGTTCCAAATATTTT	0.408													46	17					0	0	0.014410	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290665	141290665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:141290665G>A	uc004fbu.1	-	3	1457	c.1109C>T	c.(1108-1110)TCC>TTC	p.S370F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	370						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCAGAAAAGGAGACGTTGCT	0.502										HNSCC(46;0.14)			51	14					0	0	0.014410	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290826	141290826	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:141290826C>T	uc004fbu.1	-	3	1296	c.948G>A	c.(946-948)GAG>GAA	p.E316E		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	316	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGGCTAAAAACTCTAGTACTT	0.463										HNSCC(46;0.14)			42	21					0	0	0.006230	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291347	141291347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:141291347C>T	uc004fbu.1	-	3	775	c.427G>A	c.(427-429)GAA>AAA	p.E143K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	143	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GCCACCTTTTCATCTAGTGTA	0.502										HNSCC(46;0.14)			40	68					0	0	0.007835	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718600	142718600	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:142718600A>T	uc004fbx.2	-	2	701	c.325T>A	c.(325-327)TTA>ATA	p.L109I	SLITRK4_uc004fby.2_Missense_Mutation_p.L109I	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	109	Extracellular (Potential).|LRR 3.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AACTGCTTTAATGCACTGAGC	0.418													46	11					0	0	0.014410	0	0
PASD1	139135	broad.mit.edu	37	X	150832597	150832597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:150832597C>T	uc004fev.3	+	11	1180	c.848C>T	c.(847-849)TCC>TTC	p.S283F		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	283						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGCCTTATCCTTGCAAGAC	0.473													40	11					0	0	0.009718	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900216	151900216	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:151900216G>A	uc010ntp.2	-	3	939	c.585C>T	c.(583-585)ATC>ATT	p.I195I	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.I195I	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	195	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTGGGCACGATCTGATTGT	0.577													48	78					0	0	0.014410	0	0
DNASE1L1	1774	broad.mit.edu	37	X	153633216	153633216	+	Silent	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrX:153633216G>A	uc004fks.1	-	4	455	c.264C>T	c.(262-264)CCC>CCT	p.P88P	DNASE1L1_uc004fkt.1_Silent_p.P88P|DNASE1L1_uc004fku.1_Silent_p.P88P|DNASE1L1_uc004fkv.1_Silent_p.P88P|DNASE1L1_uc004fkw.1_Silent_p.P88P	NM_006730	NP_006721	P49184	DNSL1_HUMAN	deoxyribonuclease I-like 1 precursor	88					DNA catabolic process	endoplasmic reticulum	DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCCCCAGCTGGGGGCTGCTCA	0.627													16	5					0	0	0.004990	0	0
SRY	6736	broad.mit.edu	37	Y	2655550	2655550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrY:2655550G>A	uc004fqg.1	-	1	243	c.95C>T	c.(94-96)TCT>TTT	p.S32F		NM_003140	NP_003131	Q05066	SRY_HUMAN	sex determining region Y	32				SSS->AAA: Abolishes its phosphorylation by PKA. Does not enhance its DNA-binding activity. Abolishes stimulation of transcription repression.	cell differentiation|male sex determination|positive regulation of transcription, DNA-dependent|sex differentiation	cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0						AAGGAAGGAAGAGCTTCTCCG	0.448									Swyer_syndrome				32	15					0	0	0.010818	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4968742	4968742	+	Silent	SNP	C	T	T			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrY:4968742C>T	uc004fqo.2	+	2	3857	c.3123C>T	c.(3121-3123)ACC>ACT	p.T1041T	PCDH11Y_uc010nwg.1_Silent_p.T1030T|PCDH11Y_uc004fql.1_Silent_p.T1030T|PCDH11Y_uc004fqm.1_Silent_p.T1030T|PCDH11Y_uc004fqn.1_Silent_p.T1041T|PCDH11Y_uc004fqp.1_Silent_p.T812T	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	1041	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CCGTACACACCAGACCGGTAG	0.388													49	9					0	0	0.014410	0	0
USP9Y	8287	broad.mit.edu	37	Y	14954236	14954236	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chrY:14954236T>A	uc004fst.1	+	38	7228	c.6283T>A	c.(6283-6285)TTT>ATT	p.F2095I	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	2095					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						TAATGTCCTTTTTAATGTATC	0.383													39	18					0	0	0.008740	0	0
SGPL1	8879	broad.mit.edu	37	10	72628160	72628160	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr10:72628160delC	uc001jrm.2	+	8	896	c.674delC	c.(673-675)GCCfs	p.A225fs	SGPL1_uc009xqk.2_5'Flank	NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	225	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	CGGGATCTGGCCTTTGAGAAG	0.443													17	98	---	---	---	---					
LLGL2	3993	broad.mit.edu	37	17	73539582	73539583	+	Splice_Site	INS	-	GT	GT	rs112645203		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:73539582_73539583insGT	uc002joh.2	+	2	229	c.75_splice	c.e2+1	p.K25_splice	LLGL2_uc002jog.1_Splice_Site_p.K25_splice|LLGL2_uc010dgf.1_Splice_Site_p.K25_splice|LLGL2_uc002joi.2_Splice_Site_p.K25_splice|LLGL2_uc010dgg.1_Splice_Site_p.K25_splice	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c						cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			AGTTTAACAAGgtaagttaggg	0.371													23	52	---	---	---	---					
FASN	2194	broad.mit.edu	37	17	80049118	80049118	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr17:80049118delG	uc002kdu.2	-	9	1589	c.1472delC	c.(1471-1473)CCGfs	p.P491fs	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	491	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GAACCAGAGCGGGCGCTCGCC	0.697													9	9	---	---	---	---					
CTAGE1	64693	broad.mit.edu	37	18	19995591	19995591	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr18:19995591delA	uc002ktv.1	-	1	2288	c.2184delT	c.(2182-2184)TTTfs	p.F728fs		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	728	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGTAAGGAAGAAAACCTCTCG	0.488													10	22	---	---	---	---					
DNAH7	56171	broad.mit.edu	37	2	196759929	196759936	+	Frame_Shift_Del	DEL	AACAAATC	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr2:196759929_196759936delAACAAATC	uc002utj.3	-	30	4761_4768	c.4660_4667delGATTTGTT	c.(4660-4668)GATTTGTTTfs	p.D1554fs		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1554_1556					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TACCCCAGGAAACAAATCCGAAGTAATT	0.312													9	34	---	---	---	---					
CECR2	27443	broad.mit.edu	37	22	18022246	18022246	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr22:18022246delT	uc010gqw.1	+	15	2474	c.2348delT	c.(2347-2349)CTCfs	p.L783fs	CECR2_uc010gqv.1_Frame_Shift_Del_p.L642fs|CECR2_uc002zml.2_Frame_Shift_Del_p.L642fs	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	825					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CCTCGCACTCTCGGTCACGTG	0.602													21	41	---	---	---	---					
LIMD1	8994	broad.mit.edu	37	3	45718420	45718420	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr3:45718420delG	uc003coq.2	+	8	1949	c.1900delG	c.(1900-1902)GGTfs	p.G634fs		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	634	LIM zinc-binding 3.|Necessary for nuclear localization.				cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		ACAGGACTGTGGTCTGGAGCT	0.557													79	147	---	---	---	---					
POLR2B	5431	broad.mit.edu	37	4	57860959	57860961	+	In_Frame_Del	DEL	ATC	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr4:57860959_57860961delATC	uc003hcl.1	+	5	546_548	c.503_505delATC	c.(502-507)GATCGT>GGT	p.168_169DR>G	POLR2B_uc011cae.1_In_Frame_Del_p.161_162DR>G|POLR2B_uc011caf.1_In_Frame_Del_p.93_94DR>G	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	168_169					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					GGCTTGACAGATCGTGATCTTTG	0.340													21	61	---	---	---	---					
C6	729	broad.mit.edu	37	5	41149487	41149523	+	Frame_Shift_Del	DEL	GATTATTTAAACATTTCTCAGCCAAAAACTTACAAGC	-	-	rs141740354		TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr5:41149487_41149523delGATTATTTAAACATTTCTCAGCCAAAAACTTACAAGC	uc003jmk.2	-	17	2653_2689	c.2443_2479delGCTTGTAAGTTTTTGGCTGAGAAATGTTTAAATAATC	c.(2443-2481)GCTTGTAAGTTTTTGGCTGAGAAATGTTTAAATAATCAGfs	p.A815fs	C6_uc003jml.1_Frame_Shift_Del_p.A815fs	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	815_827	C5b-binding domain.|Complement control factor I module 1.|Kazal-like 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding	p.K817R(1)		ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TGGAGTTGCTGATTATTTAAACATTTCTCAGCCAAAAACTTACAAGCGGGTGAAGTA	0.414													10	126	---	---	---	---					
TRRAP	8295	broad.mit.edu	37	7	98574287	98574311	+	Frame_Shift_Del	DEL	CGCTGATGTTGGAGCACCAGGCTTT	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:98574287_98574311delCGCTGATGTTGGAGCACCAGGCTTT	uc003upp.2	+	54	8329_8353	c.8120_8144delCGCTGATGTTGGAGCACCAGGCTTT	c.(8119-8145)ACGCTGATGTTGGAGCACCAGGCTTTTfs	p.T2707fs	TRRAP_uc011kis.1_Frame_Shift_Del_p.T2689fs|TRRAP_uc003upr.2_Frame_Shift_Del_p.T2406fs	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2707_2715	FAT.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TTCCGGTCCACGCTGATGTTGGAGCACCAGGCTTTTGAAAAGGGT	0.569													10	72	---	---	---	---					
MUC17	140453	broad.mit.edu	37	7	100682344	100682344	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr7:100682344delT	uc003uxp.1	+	3	7700	c.7647delT	c.(7645-7647)TCTfs	p.S2549fs	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2549	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|41.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGGTCACTTCTACTGAAATCA	0.478													133	237	---	---	---	---					
DLC1	10395	broad.mit.edu	37	8	12968281	12968281	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr8:12968281delA	uc003wwm.2	-	7	1916	c.1472delT	c.(1471-1473)TTGfs	p.L491fs	DLC1_uc003wwk.1_Frame_Shift_Del_p.L54fs|DLC1_uc003wwl.1_Frame_Shift_Del_p.L88fs|DLC1_uc011kxx.1_5'UTR	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	491	SAM.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						ATCTCTGTCCAAAAAATCATG	0.368													84	150	---	---	---	---					
FAM102A	399665	broad.mit.edu	37	9	130716156	130716157	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2GC-06A-11D-A197-08	TCGA-EE-A2GC-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	0d86996d-3894-4f64-b4aa-8ad2cc8875ae	ff11ae0e-c751-4025-8c51-d91be1e89172	g.chr9:130716156_130716157insA	uc004bsx.1	-	2	273_274	c.194_195insT	c.(193-195)TTCfs	p.F65fs		NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	65										ovary(1)	1						TCTTACACACGAAGGTGAACCT	0.634													10	32	---	---	---	---					
